1084 lines
65 KiB
HTML
1084 lines
65 KiB
HTML
<!DOCTYPE html>
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<meta charset="UTF-8">
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<title>/c/tools/</title>
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<base href="//www.ncbi.nlm.nih.gov/IEB/ToolBox/C_DOC/lxr/">
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<meta name="description" content="NCBI C Toolkit Cross Reference">
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<link rel="stylesheet" type="text/css" href="lxr.css">
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<body>
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<h2 class="warning" style="padding:10pt">WARNING: C Toolkit is deprecated, please use C++ Toolkit instead</h2>
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<div class="nav-menu">
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<a href="/">NCBI Home</a><br>
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<a href="/IEB/">IEB Home</a><br>
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<a href="//www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/INDEX.HTML">C Toolkit docs</a><br>
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<a href="/IEB/ToolBox/CPP_DOC/lxr/source">C++ Toolkit source browser</a><br>
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</div>
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<div class="nav-title">
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<h1 class="main">NCBI C Toolkit Cross Reference</h1>
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<h3 class="banner"><span class="banner"><a class="banner" href="/IEB/ToolBox/C_DOC/lxr/source/">c</a>/​<a class="banner" href="/IEB/ToolBox/C_DOC/lxr/source/tools/">tools</a>/</span></h3>
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<div><span class='modes-sel'>Source navigation</span><br><a class='modes' href="/IEB/ToolBox/C_DOC/lxr/ident">Identifier search</a><br><a class="modes" href="/IEB/ToolBox/C_DOC/lxr/search">General search</a><br></div>
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</div>
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<table class="dircontent">
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<thead>
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<tr class="dirheader">
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<th class="diricon"> </th>
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<th class="dirname">Name</th>
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<th class="dirsize">Size</th>
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<th class="dirtime">Date (UTC)</th>
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<th class="dirdesc">Description</th>
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</tr>
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</thead>
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<tbody>
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<tr class="dirrow1">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/../"><img src="/icons/back.gif" alt="folder"></a></td>
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<td class="dirname"><a class="dirfolder" href="/IEB/ToolBox/C_DOC/lxr/source/tools/../">Parent directory</a></td>
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<td class="dirsize">-</td>
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<td class="dirtime">2025-03-15 02:59:52 </td>
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<td class="dirdesc"> </td>
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</tr>
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<tr class="dirrow1">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/actutils.c"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/actutils.c">actutils.c</a></td>
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<td class="dirsize">107467 </td>
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<td class="dirtime">2008-10-22 17:19:22 </td>
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<td class="dirdesc">utility functions for alignments</td>
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</tr>
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<tr class="dirrow1">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/actutils.h"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/actutils.h">actutils.h</a></td>
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<td class="dirsize">9154 </td>
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<td class="dirtime">2008-05-02 18:02:39 </td>
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<td class="dirdesc">utility functions for alignments</td>
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</tr>
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<tr class="dirrow2">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalg0.c"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalg0.c">bandalg0.c</a></td>
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<td class="dirsize">11834 </td>
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<td class="dirtime">2003-05-30 17:25:35 </td>
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<td class="dirdesc"><p>File name: <a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalgn0.c">bandalgn0.c</a>
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Gennadiy Savchuk, Jinqhui Zhang, Tom Madden
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Contents: Functions to perform <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=global">global</a> linear alignments.</p></td>
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</tr>
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<tr class="dirrow2">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalg1.c"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalg1.c">bandalg1.c</a></td>
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<td class="dirsize">7188 </td>
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<td class="dirtime">2003-05-30 17:25:35 </td>
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<td class="dirdesc"><p>File name: <a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalgn1.c">bandalgn1.c</a>
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Gennadiy Savchuk, Jinqhui Zhang, Tom Madden
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Contents: Functions to perform <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=global">global</a> quadratic banded alignments.</p></td>
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</tr>
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<tr class="dirrow2">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalg2.c"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalg2.c">bandalg2.c</a></td>
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<td class="dirsize">15590 </td>
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<td class="dirtime">2003-05-30 17:25:35 </td>
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<td class="dirdesc"><p>File name:
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Gennadiy Savchuk, Jinqhui Zhang, Tom Madden
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Contents: Functions to perform both local and <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=global">global</a> banded alignments.</p></td>
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</tr>
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<tr class="dirrow1">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalg3.c"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalg3.c">bandalg3.c</a></td>
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<td class="dirsize">8317 </td>
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<td class="dirtime">2003-05-30 17:25:36 </td>
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<td class="dirdesc"><p>File name:
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Gennadiy Savchuk, Jinqhui Zhang, Tom Madden
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Contents: Functions to perform <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=global">global</a> banded alignment.</p></td>
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</tr>
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<tr class="dirrow1">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalg4.c"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalg4.c">bandalg4.c</a></td>
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<td class="dirsize">23091 </td>
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<td class="dirtime">2003-05-30 17:25:36 </td>
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<td class="dirdesc"><p>File name: <a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalgn.c">bandalgn.c</a>
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Gennadiy Savchuk, Jinqhui Zhang, Tom Madden
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Contents: Functions to perform <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=global">global</a> banded alignment.</p></td>
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</tr>
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<tr class="dirrow1">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalg5.c"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalg5.c">bandalg5.c</a></td>
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<td class="dirsize">9848 </td>
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<td class="dirtime">2003-05-30 17:25:36 </td>
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<td class="dirdesc"><p>File name: <a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalgn.c">bandalgn.c</a>
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Gennadiy Savchuk, Jinqhui Zhang, Tom Madden
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Contents: Functions to perform both local and <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=global">global</a> banded alignments.</p></td>
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</tr>
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<tr class="dirrow2">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalgn.c"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalgn.c">bandalgn.c</a></td>
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<td class="dirsize">35927 </td>
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<td class="dirtime">2003-05-30 17:25:36 </td>
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<td class="dirdesc"><p>File name:
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Gennadiy Savchuk, Jinqhui Zhang, Tom Madden
|
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Contents: Functions to perform both local and <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=global">global</a> banded alignments.</p></td>
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</tr>
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<tr class="dirrow2">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalgn.h"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bandalgn.h">bandalgn.h</a></td>
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<td class="dirsize">15396 </td>
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<td class="dirtime">2000-07-26 17:26:25 </td>
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<td class="dirdesc"><p>File name:
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Gennadiy Savchuk, Jinqhui Zhang, Tom Madden
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Contents: prototypes to perform a <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=global">global</a> gapped alignment on two sequences.</p></td>
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</tr>
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<tr class="dirrow2">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blast.c"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blast.c">blast.c</a></td>
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<td class="dirsize">410837 </td>
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<td class="dirtime">2008-01-25 21:15:22 </td>
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<td class="dirdesc"><p>File name:
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Tom Madden
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Contents: BLAST functions
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Detailed Contents:
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Functions that allocate and deallocate structures used by BLAST.</p></td>
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</tr>
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<tr class="dirrow1">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blast.h"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blast.h">blast.h</a></td>
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<td class="dirsize">34862 </td>
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<td class="dirtime">2005-12-29 19:56:06 </td>
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<td class="dirdesc"><p>File name:
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Tom Madden
|
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Contents: prototypes for "public" BLAST functions (ones that other utilitiles
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may safely call).</p></td>
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</tr>
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<tr class="dirrow1">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blast_dust.c"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blast_dust.c">blast_dust.c</a></td>
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<td class="dirsize">15343 </td>
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<td class="dirtime">2007-01-23 15:25:22 </td>
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<td class="dirdesc"><p>file
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A utility to find low complexity NA regions. This parallels functionality
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of <a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/dust.c">dust.c</a> from the C toolkit, but without using the structures generated
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from <a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/ASN.1">ASN.1</a> spec.</p></td>
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</tr>
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<tr class="dirrow1">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blast_dust.h"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blast_dust.h">blast_dust.h</a></td>
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<td class="dirsize">2173 </td>
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<td class="dirtime">2007-01-23 15:25:22 </td>
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<td class="dirdesc"><p>file
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DUST filtering functions. (shouldn't this be merged with blast_filter?)
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@todo FIXME: include reference?</p></td>
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</tr>
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<tr class="dirrow2">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastconcat.c"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastconcat.c">blastconcat.c</a></td>
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<td class="dirsize">41312 </td>
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<td class="dirtime">2007-05-07 13:30:54 </td>
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<td class="dirdesc"><p>File name:
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Karolina Maciag, Aleksandr Morgulis
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Contents: implementation of functions needed for query multiplexing
|
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functionality.</p></td>
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</tr>
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<tr class="dirrow2">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastconcat.h"><img src="/icons/c.gif" alt=''></a></td>
|
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastconcat.h">blastconcat.h</a></td>
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<td class="dirsize">2702 </td>
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<td class="dirtime">2004-04-20 14:55:47 </td>
|
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<td class="dirdesc"><p>File name:
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Karolina Maciag, Aleksandr Morgulis
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Contents: type declarations for query multiplexing code.</p></td>
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</tr>
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<tr class="dirrow2">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastconcatdef.h"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastconcatdef.h">blastconcatdef.h</a></td>
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<td class="dirsize">7520 </td>
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<td class="dirtime">2005-09-26 15:02:58 </td>
|
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<td class="dirdesc"><p>File name:
|
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Karolina Maciag, Aleksandr Morgulis
|
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Contents: type definitions and <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=function">function</a> prototypes for query
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multiplexing code.</p></td>
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</tr>
|
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<tr class="dirrow1">
|
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastdef.h"><img src="/icons/c.gif" alt=''></a></td>
|
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastdef.h">blastdef.h</a></td>
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<td class="dirsize">78000 </td>
|
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<td class="dirtime">2007-03-13 20:39:58 </td>
|
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<td class="dirdesc"><p>File name:
|
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Tom Madden
|
|
Contents: #defines and definitions for structures used by BLAST.</p></td>
|
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</tr>
|
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<tr class="dirrow1">
|
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastkar.c"><img src="/icons/c.gif" alt=''></a></td>
|
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastkar.c">blastkar.c</a></td>
|
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<td class="dirsize">162466 </td>
|
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<td class="dirtime">2006-12-14 17:08:19 </td>
|
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<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Tom Madden
|
|
Contents: Functions to calculate BLAST probabilities etc.</p></td>
|
|
</tr>
|
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<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastkar.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastkar.h">blastkar.h</a></td>
|
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<td class="dirsize">26514 </td>
|
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<td class="dirtime">2005-10-06 12:49:39 </td>
|
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<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Tom Madden
|
|
Contents: definitions and prototypes used by <a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastkar.c">blastkar.c</a> to calculate BLAST
|
|
statistics.</p></td>
|
|
</tr>
|
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<tr class="dirrow2">
|
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastool.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastool.c">blastool.c</a></td>
|
|
<td class="dirsize">214866 </td>
|
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<td class="dirtime">2007-03-15 20:39:17 </td>
|
|
<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Tom Madden
|
|
Contents: Utilities for BLAST</p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastpri.h"><img src="/icons/c.gif" alt=''></a></td>
|
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastpri.h">blastpri.h</a></td>
|
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<td class="dirsize">42554 </td>
|
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<td class="dirtime">2007-03-13 20:39:04 </td>
|
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<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Tom Madden
|
|
Contents: prototypes for "private" BLAST functions, these should not be called
|
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by outside utilities.</p></td>
|
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</tr>
|
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<tr class="dirrow2">
|
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastutl.c"><img src="/icons/c.gif" alt=''></a></td>
|
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blastutl.c">blastutl.c</a></td>
|
|
<td class="dirsize">383875 </td>
|
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<td class="dirtime">2010-12-10 18:47:12 </td>
|
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<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Tom Madden
|
|
Contents: Utilities for BLAST
|
|
$Revision: <a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/6.472">6.472</a> $</p></td>
|
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</tr>
|
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<tr class="dirrow1">
|
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blfmtutl.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blfmtutl.c">blfmtutl.c</a></td>
|
|
<td class="dirsize">45526 </td>
|
|
<td class="dirtime">2012-10-10 14:05:50 </td>
|
|
<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Tom Madden
|
|
Contents: Utilities for BLAST formatting</p></td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blfmtutl.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blfmtutl.h">blfmtutl.h</a></td>
|
|
<td class="dirsize">7807 </td>
|
|
<td class="dirtime">2006-04-26 12:42:36 </td>
|
|
<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Tom Madden
|
|
Contents: prototypes and defines for Blast formatting utilities</p></td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blstxml.asn"><img src="/icons/generic.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blstxml.asn">blstxml.asn</a></td>
|
|
<td class="dirsize">3561 </td>
|
|
<td class="dirtime">2008-08-26 22:25:36 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blstxml.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/blstxml.h">blstxml.h</a></td>
|
|
<td class="dirsize">7930 </td>
|
|
<td class="dirtime">2006-09-18 15:20:39 </td>
|
|
<td class="dirdesc"><p>Automatic header module from ASNTOOL</p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bxmlobj.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bxmlobj.c">bxmlobj.c</a></td>
|
|
<td class="dirsize">35747 </td>
|
|
<td class="dirtime">2006-09-18 15:20:39 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bxmlobj.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/bxmlobj.h">bxmlobj.h</a></td>
|
|
<td class="dirsize">5554 </td>
|
|
<td class="dirtime">2006-09-18 15:20:39 </td>
|
|
<td class="dirdesc"><p>ifndef <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=_bxmlobj_">_bxmlobj_</a></p></td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/csim.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/csim.c">csim.c</a></td>
|
|
<td class="dirsize">40175 </td>
|
|
<td class="dirtime">2003-05-30 17:25:36 </td>
|
|
<td class="dirdesc">functions for using the sim/sim2 algorithm</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/db_list.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/db_list.h">db_list.h</a></td>
|
|
<td class="dirsize">4118 </td>
|
|
<td class="dirtime">1997-08-25 18:53:00 </td>
|
|
<td class="dirdesc">functions used in the sim2 algorithm</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/db_slist.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/db_slist.c">db_slist.c</a></td>
|
|
<td class="dirsize">11499 </td>
|
|
<td class="dirtime">2003-05-30 17:25:36 </td>
|
|
<td class="dirdesc">Example of Skip List source code for C:</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/dotseq.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/dotseq.c">dotseq.c</a></td>
|
|
<td class="dirsize">56818 </td>
|
|
<td class="dirtime">2006-07-13 17:16:20 </td>
|
|
<td class="dirdesc">computes local alignments for dot <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=matrix">matrix</a></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/dotseq.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/dotseq.h">dotseq.h</a></td>
|
|
<td class="dirsize">7425 </td>
|
|
<td class="dirtime">2001-08-09 16:33:18 </td>
|
|
<td class="dirdesc">computes local alignments for dot <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=matrix">matrix</a></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/dust.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/dust.c">dust.c</a></td>
|
|
<td class="dirsize">17449 </td>
|
|
<td class="dirtime">2003-05-30 17:25:36 </td>
|
|
<td class="dirdesc">a utility to find low complexity NA regions</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/dust.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/dust.h">dust.h</a></td>
|
|
<td class="dirsize">4318 </td>
|
|
<td class="dirtime">1999-08-18 17:57:56 </td>
|
|
<td class="dirdesc">a utility to find low complexity NA regions</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/falign.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/falign.c">falign.c</a></td>
|
|
<td class="dirsize">73573 </td>
|
|
<td class="dirtime">2003-05-30 17:25:36 </td>
|
|
<td class="dirdesc">Part 1 of sim2: generate the K best <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=fragment">fragment</a> alignments.</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/g_any.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/g_any.c">g_any.c</a></td>
|
|
<td class="dirsize">12025 </td>
|
|
<td class="dirtime">2003-05-30 17:25:36 </td>
|
|
<td class="dirdesc">A PACKAGE FOR GLOBALLY ALIGNING TWO SEQUENCES WITHIN AN ARBITRARY REGION:</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/gapxdrop.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/gapxdrop.c">gapxdrop.c</a></td>
|
|
<td class="dirsize">91161 </td>
|
|
<td class="dirtime">2003-11-07 21:52:52 </td>
|
|
<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Gennadiy Savchuk, Jinqhui Zhang, Tom Madden
|
|
[From code originally supplied by Webb Miller's lab].
|
|
Contents: Functions to perform a gapped alignment on two sequences.</p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/gapxdrop.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/gapxdrop.h">gapxdrop.h</a></td>
|
|
<td class="dirsize">12562 </td>
|
|
<td class="dirtime">2003-02-28 22:57:24 </td>
|
|
<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Gennadiy Savchuk, Jinqhui Zhang, Tom Madden
|
|
Contents: prototypes to perform a gapped alignment on two sequences.</p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/impatool.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/impatool.c">impatool.c</a></td>
|
|
<td class="dirsize">24292 </td>
|
|
<td class="dirtime">2006-06-30 18:44:40 </td>
|
|
<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Alejandro Schaffer
|
|
Contents: utility routines for IMPALA.</p></td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/kappa.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/kappa.c">kappa.c</a></td>
|
|
<td class="dirsize">106485 </td>
|
|
<td class="dirtime">2013-11-04 15:42:10 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/list.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/list.h">list.h</a></td>
|
|
<td class="dirsize">4045 </td>
|
|
<td class="dirtime">2000-07-08 20:44:11 </td>
|
|
<td class="dirdesc">functions used in the sim2 algorithm</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/lnfac.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/lnfac.h">lnfac.h</a></td>
|
|
<td class="dirsize">143235 </td>
|
|
<td class="dirtime">1998-06-23 16:41:06 </td>
|
|
<td class="dirdesc"><p>ifdef WIN16
|
|
float</p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/lookup.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/lookup.c">lookup.c</a></td>
|
|
<td class="dirsize">45860 </td>
|
|
<td class="dirtime">2005-07-28 14:57:10 </td>
|
|
<td class="dirdesc">Functions to store "words" from a query and perform lookups against</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/lookup.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/lookup.h">lookup.h</a></td>
|
|
<td class="dirsize">19972 </td>
|
|
<td class="dirtime">2007-03-14 16:39:29 </td>
|
|
<td class="dirdesc">Functions that format traditional BLAST <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=output">output</a>.</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/mbalign.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/mbalign.c">mbalign.c</a></td>
|
|
<td class="dirsize">34605 </td>
|
|
<td class="dirtime">2006-02-02 17:57:34 </td>
|
|
<td class="dirdesc">Alignment functions for Mega Blast program</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/mbalign.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/mbalign.h">mbalign.h</a></td>
|
|
<td class="dirsize">2277 </td>
|
|
<td class="dirtime">2005-05-03 20:29:17 </td>
|
|
<td class="dirdesc"><p>ifndef __</p></td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/mblast.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/mblast.c">mblast.c</a></td>
|
|
<td class="dirsize">161261 </td>
|
|
<td class="dirtime">2006-09-21 13:42:37 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/mblast.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/mblast.h">mblast.h</a></td>
|
|
<td class="dirsize">10598 </td>
|
|
<td class="dirtime">2004-01-16 23:43:44 </td>
|
|
<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Ilya Dondoshansky
|
|
Contents: prototypes for "public" Mega BLAST functions (ones that other utilitiles
|
|
may safely call).</p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/motif.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/motif.c">motif.c</a></td>
|
|
<td class="dirsize">18963 </td>
|
|
<td class="dirtime">2007-05-07 13:30:54 </td>
|
|
<td class="dirdesc"><a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=sequence">sequence</a> motif <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=search">search</a> functions</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/motif.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/motif.h">motif.h</a></td>
|
|
<td class="dirsize">2781 </td>
|
|
<td class="dirtime">2001-08-08 23:18:57 </td>
|
|
<td class="dirdesc"><a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=sequence">sequence</a> motif <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=search">search</a> functions</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/ncbisam.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/ncbisam.c">ncbisam.c</a></td>
|
|
<td class="dirsize">83709 </td>
|
|
<td class="dirtime">2007-11-06 19:20:06 </td>
|
|
<td class="dirdesc">Main file for ISAM library</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/ncbisam.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/ncbisam.h">ncbisam.h</a></td>
|
|
<td class="dirsize">14197 </td>
|
|
<td class="dirtime">2006-05-10 20:47:14 </td>
|
|
<td class="dirdesc">External include file for ISAM library</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/ncbisami.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/ncbisami.h">ncbisami.h</a></td>
|
|
<td class="dirsize">7581 </td>
|
|
<td class="dirtime">2006-05-10 20:47:13 </td>
|
|
<td class="dirdesc">Internal include file for ISAM library</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/ncbisort.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/ncbisort.c">ncbisort.c</a></td>
|
|
<td class="dirsize">34345 </td>
|
|
<td class="dirtime">2023-11-08 21:26:17 </td>
|
|
<td class="dirdesc">Main file for SORTing library</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/ncbisort.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/ncbisort.h">ncbisort.h</a></td>
|
|
<td class="dirsize">8284 </td>
|
|
<td class="dirtime">2006-05-10 20:47:17 </td>
|
|
<td class="dirdesc">External include file for SORTing library</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/ncbisrti.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/ncbisrti.h">ncbisrti.h</a></td>
|
|
<td class="dirsize">6343 </td>
|
|
<td class="dirtime">2003-12-03 02:10:52 </td>
|
|
<td class="dirdesc">Internal include file for SORTing library</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/pattern1.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/pattern1.c">pattern1.c</a></td>
|
|
<td class="dirsize">64623 </td>
|
|
<td class="dirtime">2023-11-08 21:26:17 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/pobutil.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/pobutil.c">pobutil.c</a></td>
|
|
<td class="dirsize">52548 </td>
|
|
<td class="dirtime">2007-05-07 13:30:54 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/pobutil.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/pobutil.h">pobutil.h</a></td>
|
|
<td class="dirsize">6104 </td>
|
|
<td class="dirtime">1998-06-17 22:18:36 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/posit.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/posit.c">posit.c</a></td>
|
|
<td class="dirsize">238545 </td>
|
|
<td class="dirtime">2011-10-25 14:33:16 </td>
|
|
<td class="dirdesc"><p>PUBLIC DOMAIN NOTICE
|
|
National Center for Biotechnology Information
|
|
This software/database is a "United States Government Work" under the
|
|
terms of the United States Copyright Act.</p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/posit.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/posit.h">posit.h</a></td>
|
|
<td class="dirsize">15629 </td>
|
|
<td class="dirtime">2011-10-25 14:33:16 </td>
|
|
<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Alejandro Schaffer
|
|
Contents: header file for position-based BLAST.
|
|
$Revision: <a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/6.33">6.33</a> $</p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/posit2.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/posit2.c">posit2.c</a></td>
|
|
<td class="dirsize">16340 </td>
|
|
<td class="dirtime">2006-09-18 20:54:27 </td>
|
|
<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Alejandro Schaffer
|
|
Contents: utilities for makematrices.
|
|
$Revision: <a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/6.12">6.12</a> $</p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/profiles.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/profiles.h">profiles.h</a></td>
|
|
<td class="dirsize">5373 </td>
|
|
<td class="dirtime">2004-09-21 14:45:26 </td>
|
|
<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Alejandro Schaffer
|
|
Contents: utilities for IMPALA</p></td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/pseed3.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/pseed3.c">pseed3.c</a></td>
|
|
<td class="dirsize">74591 </td>
|
|
<td class="dirtime">2017-04-05 04:01:39 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/readdb.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/readdb.c">readdb.c</a></td>
|
|
<td class="dirsize">430556 </td>
|
|
<td class="dirtime">2023-11-08 21:26:17 </td>
|
|
<td class="dirdesc">Functions to rapidly read databases from files produced by <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=formatdb">formatdb</a>.</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/readdb.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/readdb.h">readdb.h</a></td>
|
|
<td class="dirsize">76837 </td>
|
|
<td class="dirtime">2009-01-15 15:20:35 </td>
|
|
<td class="dirdesc">Functions to rapidly read databases from files produced by <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=formatdb">formatdb</a>.</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/rpsutil.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/rpsutil.c">rpsutil.c</a></td>
|
|
<td class="dirsize">95423 </td>
|
|
<td class="dirtime">2019-12-16 14:59:41 </td>
|
|
<td class="dirdesc">Reversed PSI BLAST utilities file</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/rpsutil.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/rpsutil.h">rpsutil.h</a></td>
|
|
<td class="dirsize">14305 </td>
|
|
<td class="dirtime">2003-10-07 15:24:10 </td>
|
|
<td class="dirdesc">Reversed PSI BLAST utilities file</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/salign.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/salign.c">salign.c</a></td>
|
|
<td class="dirsize">56931 </td>
|
|
<td class="dirtime">2009-01-21 17:09:18 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/salign.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/salign.h">salign.h</a></td>
|
|
<td class="dirsize">1324 </td>
|
|
<td class="dirtime">2006-11-21 20:05:35 </td>
|
|
<td class="dirdesc"><p>Header file containing external functions of <a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/salign.c">salign.c</a></p></td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/salmedia.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/salmedia.h">salmedia.h</a></td>
|
|
<td class="dirsize">2127 </td>
|
|
<td class="dirtime">2006-07-13 17:16:20 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/salptool.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/salptool.c">salptool.c</a></td>
|
|
<td class="dirsize">48950 </td>
|
|
<td class="dirtime">2008-07-07 18:52:31 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/salptool.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/salptool.h">salptool.h</a></td>
|
|
<td class="dirsize">874 </td>
|
|
<td class="dirtime">2008-07-07 18:52:31 </td>
|
|
<td class="dirdesc"><p><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/salpedit.h">salpedit.h</a></p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/sec.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/sec.c">sec.c</a></td>
|
|
<td class="dirsize">13650 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">Part 2 of sim2 - refine the <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=fragment">fragment</a> alignments</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/sec.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/sec.h">sec.h</a></td>
|
|
<td class="dirsize">608 </td>
|
|
<td class="dirtime">1997-08-25 18:54:31 </td>
|
|
<td class="dirdesc"><p><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/sim_aln.c">sim_aln.c</a> modified from the <a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/sim_aln_old.c">sim_aln_old.c</a>. Input to CSIM will be <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Bioseq">Bioseq</a>
|
|
object instead of two <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=sequence">sequence</a> strings. CSIM is also modified
|
|
Jinghui Zhang </p></td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/seed.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/seed.h">seed.h</a></td>
|
|
<td class="dirsize">13994 </td>
|
|
<td class="dirtime">2008-01-09 19:04:04 </td>
|
|
<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Alejandro Schaffer
|
|
Contents: header file for PHI-BLAST and pseed3.</p></td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/seg.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/seg.c">seg.c</a></td>
|
|
<td class="dirsize">39042 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/seg.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/seg.h">seg.h</a></td>
|
|
<td class="dirsize">4022 </td>
|
|
<td class="dirtime">2002-03-27 14:41:53 </td>
|
|
<td class="dirdesc">low-complexity <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=filter">filter</a> 'seg'</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/sim2.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/sim2.c">sim2.c</a></td>
|
|
<td class="dirsize">4156 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/sim3.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/sim3.c">sim3.c</a></td>
|
|
<td class="dirsize">25505 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">compare two very similar sequences with affine gap penalties</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/sim4.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/sim4.c">sim4.c</a></td>
|
|
<td class="dirsize">87935 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">an algorithm to align a cDNA <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=sequence">sequence</a> with a genomic <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=sequence">sequence</a>.</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/simutil.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/simutil.c">simutil.c</a></td>
|
|
<td class="dirsize">34379 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">functions for using the sim/sim2 algorithm</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/simutil.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/simutil.h">simutil.h</a></td>
|
|
<td class="dirsize">19046 </td>
|
|
<td class="dirtime">1998-09-09 11:47:43 </td>
|
|
<td class="dirdesc">Utilities for sim and sim2 algorithm</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/slist.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/slist.c">slist.c</a></td>
|
|
<td class="dirsize">9344 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc"><p>PUBLIC DOMAIN NOTICE
|
|
National Center for Biotechnology Information
|
|
This software/database is a "United States Government Work" under the
|
|
terms of the United States Copyright Act.</p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/spidey.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/spidey.c">spidey.c</a></td>
|
|
<td class="dirsize">367239 </td>
|
|
<td class="dirtime">2016-09-02 14:57:38 </td>
|
|
<td class="dirdesc">mrna-to-genomic alignment algorithms and functions</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/spidey.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/spidey.h">spidey.h</a></td>
|
|
<td class="dirsize">22034 </td>
|
|
<td class="dirtime">2004-03-25 21:20:03 </td>
|
|
<td class="dirdesc">mrna-to-genomic alignment algorithms and functions</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/splutil.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/splutil.c">splutil.c</a></td>
|
|
<td class="dirsize">4726 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/splutil.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/splutil.h">splutil.h</a></td>
|
|
<td class="dirsize">1980 </td>
|
|
<td class="dirtime">2000-04-22 15:56:04 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/stsutil.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/stsutil.c">stsutil.c</a></td>
|
|
<td class="dirsize">36114 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">NCBI STS Search Tool utilities</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/stsutil.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/stsutil.h">stsutil.h</a></td>
|
|
<td class="dirsize">9360 </td>
|
|
<td class="dirtime">1997-08-25 18:54:52 </td>
|
|
<td class="dirdesc">Header file for NCBI STS Search Tool utilities</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/suggadj.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/suggadj.c">suggadj.c</a></td>
|
|
<td class="dirsize">51221 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/suggest.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/suggest.c">suggest.c</a></td>
|
|
<td class="dirsize">44651 </td>
|
|
<td class="dirtime">2009-04-10 17:22:14 </td>
|
|
<td class="dirdesc"><p>PUBLIC DOMAIN NOTICE
|
|
National Center for Biotechnology Information (NCBI)
|
|
This software/database is a "United States Government Work" under the
|
|
terms of the United States Copyright Act.</p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/suggest.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/suggest.h">suggest.h</a></td>
|
|
<td class="dirsize">7307 </td>
|
|
<td class="dirtime">2009-04-10 17:22:14 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/suggslp.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/suggslp.c">suggslp.c</a></td>
|
|
<td class="dirsize">27998 </td>
|
|
<td class="dirtime">2009-04-16 18:35:41 </td>
|
|
<td class="dirdesc">Implementation of Suggest standalone prediction <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=function">function</a>. Here it</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/suggslp.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/suggslp.h">suggslp.h</a></td>
|
|
<td class="dirsize">2541 </td>
|
|
<td class="dirtime">2009-04-16 18:35:41 </td>
|
|
<td class="dirdesc">Implementation of standalone Suggest prediction <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=function">function</a>.</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/taxblast.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/taxblast.c">taxblast.c</a></td>
|
|
<td class="dirsize">62939 </td>
|
|
<td class="dirtime">2015-07-06 19:25:47 </td>
|
|
<td class="dirdesc">Utilities and functions for Tax-Blast program</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/taxblast.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/taxblast.h">taxblast.h</a></td>
|
|
<td class="dirsize">3115 </td>
|
|
<td class="dirtime">2002-10-07 19:52:07 </td>
|
|
<td class="dirdesc">Header file for Tax-Blast program</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/terr.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/terr.h">terr.h</a></td>
|
|
<td class="dirsize">904 </td>
|
|
<td class="dirtime">1997-12-08 22:55:04 </td>
|
|
<td class="dirdesc"><p>ifndef <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=__MODULE_toasn3__">__MODULE_toasn3__</a></p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/tfuns.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/tfuns.c">tfuns.c</a></td>
|
|
<td class="dirsize">32630 </td>
|
|
<td class="dirtime">2015-08-17 17:15:09 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/tfuns.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/tfuns.h">tfuns.h</a></td>
|
|
<td class="dirsize">2316 </td>
|
|
<td class="dirtime">2007-10-10 16:10:17 </td>
|
|
<td class="dirdesc"><p>include <<a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/stdio.h">stdio.h</a>></p></td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/toasn3.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/toasn3.c">toasn3.c</a></td>
|
|
<td class="dirsize">188775 </td>
|
|
<td class="dirtime">2016-11-02 23:36:09 </td>
|
|
<td class="dirdesc"><p>converts a Seq-entry or elements of a <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Bioseq">Bioseq</a>-set to new Biosource style</p></td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/toasn3.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/toasn3.h">toasn3.h</a></td>
|
|
<td class="dirsize">9242 </td>
|
|
<td class="dirtime">2016-07-29 01:49:57 </td>
|
|
<td class="dirdesc"><p>ifndef <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=_TOASN3_">_TOASN3_</a></p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/toporg.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/toporg.c">toporg.c</a></td>
|
|
<td class="dirsize">203584 </td>
|
|
<td class="dirtime">2017-01-19 22:35:38 </td>
|
|
<td class="dirdesc"> </td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/toporg.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/toporg.h">toporg.h</a></td>
|
|
<td class="dirsize">4065 </td>
|
|
<td class="dirtime">2015-03-02 20:43:47 </td>
|
|
<td class="dirdesc"><p>ifndef <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=_TOPORG_">_TOPORG_</a></p></td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkbias.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkbias.c">urkbias.c</a></td>
|
|
<td class="dirsize">17622 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">codon bias</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkbias.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkbias.h">urkbias.h</a></td>
|
|
<td class="dirsize">3150 </td>
|
|
<td class="dirtime">1998-09-16 17:46:43 </td>
|
|
<td class="dirdesc">codon bias header</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkcnsrt.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkcnsrt.c">urkcnsrt.c</a></td>
|
|
<td class="dirsize">41098 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">consort</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkcnsrt.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkcnsrt.h">urkcnsrt.h</a></td>
|
|
<td class="dirsize">3640 </td>
|
|
<td class="dirtime">1998-10-13 17:16:37 </td>
|
|
<td class="dirdesc">consort header</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkdust.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkdust.c">urkdust.c</a></td>
|
|
<td class="dirsize">19164 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">urkdust</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkdust.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkdust.h">urkdust.h</a></td>
|
|
<td class="dirsize">3845 </td>
|
|
<td class="dirtime">1998-09-16 17:46:44 </td>
|
|
<td class="dirdesc">urkdust header</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkepi.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkepi.c">urkepi.c</a></td>
|
|
<td class="dirsize">30068 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">epi - low complexity</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkepi.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkepi.h">urkepi.h</a></td>
|
|
<td class="dirsize">3474 </td>
|
|
<td class="dirtime">1998-11-16 14:29:51 </td>
|
|
<td class="dirdesc">epi header</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkfltr.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkfltr.c">urkfltr.c</a></td>
|
|
<td class="dirsize">12033 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc"><a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=filter">filter</a></td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkfltr.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkfltr.h">urkfltr.h</a></td>
|
|
<td class="dirsize">3383 </td>
|
|
<td class="dirtime">1998-09-16 17:46:45 </td>
|
|
<td class="dirdesc"><a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=filter">filter</a> header</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkgraph.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkgraph.c">urkgraph.c</a></td>
|
|
<td class="dirsize">25680 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">graph utilities</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkgraph.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkgraph.h">urkgraph.h</a></td>
|
|
<td class="dirsize">5896 </td>
|
|
<td class="dirtime">1998-09-16 17:46:45 </td>
|
|
<td class="dirdesc">graph header</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkpcc.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkpcc.c">urkpcc.c</a></td>
|
|
<td class="dirsize">12855 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">coiled-coils</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkpcc.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkpcc.h">urkpcc.h</a></td>
|
|
<td class="dirsize">3424 </td>
|
|
<td class="dirtime">1998-11-16 14:29:50 </td>
|
|
<td class="dirdesc">coiled-coil header</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkptpf.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkptpf.c">urkptpf.c</a></td>
|
|
<td class="dirsize">63911 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">patterns and profiles</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkptpf.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkptpf.h">urkptpf.h</a></td>
|
|
<td class="dirsize">6102 </td>
|
|
<td class="dirtime">1999-07-13 13:07:05 </td>
|
|
<td class="dirdesc">patterns and profiles header</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urksigu.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urksigu.c">urksigu.c</a></td>
|
|
<td class="dirsize">5534 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">sigme utilities</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urksigu.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urksigu.h">urksigu.h</a></td>
|
|
<td class="dirsize">2603 </td>
|
|
<td class="dirtime">1998-11-24 15:40:54 </td>
|
|
<td class="dirdesc">sigme utilities header</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urktree.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urktree.c">urktree.c</a></td>
|
|
<td class="dirsize">34887 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">trees</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urktree.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urktree.h">urktree.h</a></td>
|
|
<td class="dirsize">6014 </td>
|
|
<td class="dirtime">1998-09-16 17:46:47 </td>
|
|
<td class="dirdesc">trees header</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkutil.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkutil.c">urkutil.c</a></td>
|
|
<td class="dirsize">3671 </td>
|
|
<td class="dirtime">2003-05-30 17:25:38 </td>
|
|
<td class="dirdesc">urk utilities</td>
|
|
</tr>
|
|
<tr class="dirrow1">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkutil.h"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/urkutil.h">urkutil.h</a></td>
|
|
<td class="dirsize">2210 </td>
|
|
<td class="dirtime">1999-01-27 15:08:42 </td>
|
|
<td class="dirdesc">urk utilities header</td>
|
|
</tr>
|
|
<tr class="dirrow2">
|
|
<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/vecscrn.c"><img src="/icons/c.gif" alt=''></a></td>
|
|
<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/vecscrn.c">vecscrn.c</a></td>
|
|
<td class="dirsize">32060 </td>
|
|
<td class="dirtime">2005-12-27 14:46:44 </td>
|
|
<td class="dirdesc"><p>File name:
|
|
<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Tom Madden
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Contents: functions for Vector screening.</p></td>
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</tr>
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<tr class="dirrow2">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/vecscrn.h"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/vecscrn.h">vecscrn.h</a></td>
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<td class="dirsize">8016 </td>
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<td class="dirtime">2000-07-08 20:44:12 </td>
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<td class="dirdesc"><p>File name:
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<a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=Author">Author</a>: Tom Madden
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Contents: functions for Vector screening.</p></td>
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</tr>
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<tr class="dirrow2">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/xmlblast.c"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/xmlblast.c">xmlblast.c</a></td>
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<td class="dirsize">55637 </td>
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<td class="dirtime">2007-05-07 13:30:54 </td>
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<td class="dirdesc">Functions to print simplified BLAST <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=output">output</a> (XML)</td>
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</tr>
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<tr class="dirrow1">
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<td class="diricon"><a class="" href="/IEB/ToolBox/C_DOC/lxr/source/tools/xmlblast.h"><img src="/icons/c.gif" alt=''></a></td>
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<td class="dirname"><a class="dirfile" href="/IEB/ToolBox/C_DOC/lxr/source/tools/xmlblast.h">xmlblast.h</a></td>
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<td class="dirsize">6930 </td>
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<td class="dirtime">2004-04-29 19:55:35 </td>
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<td class="dirdesc">Functions to print simplified BLAST <a class='' href="/IEB/ToolBox/C_DOC/lxr/ident?i=output">output</a> (XML)</td>
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</tr>
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