1044 lines
78 KiB
HTML
1044 lines
78 KiB
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<li class="navelem"><a class="el" href="dir_d44c64559bbebec7f509842c48db8b23.html">include</a></li><li class="navelem"><a class="el" href="dir_7b63dab485b2753ac9ee90fb2fccf90c.html">algo</a></li><li class="navelem"><a class="el" href="dir_2881ebf396fbe939877052135a01d267.html">blast</a></li><li class="navelem"><a class="el" href="dir_a7227333ca008076ef43af2400e728f7.html">core</a></li> </ul>
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<div class="title">ncbi_std.h File Reference</div> </div>
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</div><!--header-->
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<div class="contents">
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<p>Type and macro definitions from C toolkit that are not defined in C++ toolkit.
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<a href="#details">More...</a></p>
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<div class="textblock"><code>#include <stdio.h></code><br />
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<code>#include <stdlib.h></code><br />
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<code>#include <string.h></code><br />
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<code>#include <math.h></code><br />
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<code>#include <ctype.h></code><br />
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<code>#include <assert.h></code><br />
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<code>#include "<a class="el" href="blast__toolkit_8h_source.html">blast_toolkit.h</a>"</code><br />
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<code>#include <<a class="el" href="blast__export_8h_source.html">algo/blast/core/blast_export.h</a>></code><br />
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</div><div class="textblock"><div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
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<img id="dynsection-0-trigger" src="closed.png" alt="+"/> Include dependency graph for ncbi_std.h:</div>
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</div>
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<div id="dynsection-0-content" class="dyncontent" style="display:none;">
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<div class="center"><img src="img__incl/ncbi__std_8h__incl.png" border="0" usemap="#ainclude_2algo_2blast_2core_2ncbi__std_8h" alt=""/></div>
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<area shape="rect" href="lookup__wrap_8c.html" title="Wrapper for different flavors of lookup tables allowing a uniform interface in the code." alt="" coords="3078,689,3207,731"/>
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<area shape="rect" href="aalookup__unit__test_8cpp.html" title=" " alt="" coords="2597,957,2731,1013"/>
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<area shape="rect" href="aascan__unit__test_8cpp.html" title=" " alt="" coords="3403,957,3557,1013"/>
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<area shape="rect" href="makeprofiledb_8cpp.html" title="Command line tool to create RPS,COBALT & DELTA BLAST databases." alt="" coords="3485,607,3707,634"/>
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<area shape="rect" href="blast__types_8hpp.html" title="Definitions of special type used in BLAST." alt="" coords="1907,600,2045,641"/>
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<area shape="rect" href="query__data_8hpp.html" title="NOTE: This file contains work in progress and the APIs are likely to change, please do not rely on th..." alt="" coords="5525,310,5661,351"/>
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<area shape="rect" href="seqsrc__multiseq_8hpp.html" title="Implementation of the BlastSeqSrc interface for a vector of sequence locations." alt="" coords="1857,511,2023,552"/>
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</map>
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</div>
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</div>
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<p><a href="ncbi__std_8h_source.html">Go to the source code of this file.</a>
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<p><a href="/IEB/ToolBox/CPP_DOC/viewvc.cgi?p=include/algo/blast/core/ncbi_std.h">Go to the SVN repository for this file.</a></p></p>
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<table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
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Classes</h2></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structListNode.html">ListNode</a></td></tr>
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<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A generic linked list node structure. <a href="structListNode.html#details">More...</a><br /></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="define-members"></a>
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Macros</h2></td></tr>
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<tr class="memitem:a77e48a8fb427aed3e9fd3cd5915354ab"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a77e48a8fb427aed3e9fd3cd5915354ab">NCBI_INLINE</a>   inline</td></tr>
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<tr class="memdesc:a77e48a8fb427aed3e9fd3cd5915354ab"><td class="mdescLeft"> </td><td class="mdescRight">"inline" seems to work on our remaining in-house compilers (WorkShop, Compaq, ICC, MPW) <a href="ncbi__std_8h.html#a77e48a8fb427aed3e9fd3cd5915354ab">More...</a><br /></td></tr>
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<tr class="separator:a77e48a8fb427aed3e9fd3cd5915354ab"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:aa8cecfc5c5c054d2875c03e77b7be15d"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#aa8cecfc5c5c054d2875c03e77b7be15d">TRUE</a>   1</td></tr>
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<tr class="memdesc:aa8cecfc5c5c054d2875c03e77b7be15d"><td class="mdescLeft"> </td><td class="mdescRight">bool replacment for C indicating true. <a href="ncbi__std_8h.html#aa8cecfc5c5c054d2875c03e77b7be15d">More...</a><br /></td></tr>
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<tr class="separator:aa8cecfc5c5c054d2875c03e77b7be15d"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:aa93f0eb578d23995850d61f7d61c55c1"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#aa93f0eb578d23995850d61f7d61c55c1">FALSE</a>   0</td></tr>
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<tr class="memdesc:aa93f0eb578d23995850d61f7d61c55c1"><td class="mdescLeft"> </td><td class="mdescRight">bool replacment for C indicating false. <a href="ncbi__std_8h.html#aa93f0eb578d23995850d61f7d61c55c1">More...</a><br /></td></tr>
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<tr class="separator:aa93f0eb578d23995850d61f7d61c55c1"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:af343b20373ba49a92fce523e948f2ab3"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#af343b20373ba49a92fce523e948f2ab3">ASSERT</a>   <a class="el" href="srv__diag_8hpp.html#af576bf8ffa22a44e53018c67095ffbf0">assert</a></td></tr>
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<tr class="memdesc:af343b20373ba49a92fce523e948f2ab3"><td class="mdescLeft"> </td><td class="mdescRight">macro for assert. <a href="ncbi__std_8h.html#af343b20373ba49a92fce523e948f2ab3">More...</a><br /></td></tr>
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<tr class="separator:af343b20373ba49a92fce523e948f2ab3"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a3acffbd305ee72dcd4593c0d8af64a4f"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a3acffbd305ee72dcd4593c0d8af64a4f">MIN</a>(<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>, <a class="el" href="ncbi__localip_8c.html#a790d5baa17ec7aaf7bb49750a16e9c29">b</a>)   ((<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)>(<a class="el" href="ncbi__localip_8c.html#a790d5baa17ec7aaf7bb49750a16e9c29">b</a>)?(<a class="el" href="ncbi__localip_8c.html#a790d5baa17ec7aaf7bb49750a16e9c29">b</a>):(<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>))</td></tr>
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<tr class="memdesc:a3acffbd305ee72dcd4593c0d8af64a4f"><td class="mdescLeft"> </td><td class="mdescRight">returns smaller of a and b. <a href="ncbi__std_8h.html#a3acffbd305ee72dcd4593c0d8af64a4f">More...</a><br /></td></tr>
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<tr class="separator:a3acffbd305ee72dcd4593c0d8af64a4f"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:afa99ec4acc4ecb2dc3c2d05da15d0e3f"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#afa99ec4acc4ecb2dc3c2d05da15d0e3f">MAX</a>(<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>, <a class="el" href="ncbi__localip_8c.html#a790d5baa17ec7aaf7bb49750a16e9c29">b</a>)   ((<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)>=(<a class="el" href="ncbi__localip_8c.html#a790d5baa17ec7aaf7bb49750a16e9c29">b</a>)?(<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>):(<a class="el" href="ncbi__localip_8c.html#a790d5baa17ec7aaf7bb49750a16e9c29">b</a>))</td></tr>
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<tr class="memdesc:afa99ec4acc4ecb2dc3c2d05da15d0e3f"><td class="mdescLeft"> </td><td class="mdescRight">returns larger of a and b. <a href="ncbi__std_8h.html#afa99ec4acc4ecb2dc3c2d05da15d0e3f">More...</a><br /></td></tr>
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<tr class="separator:afa99ec4acc4ecb2dc3c2d05da15d0e3f"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ae2f08dc603ae93c402abd918ba4e23e1"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#ae2f08dc603ae93c402abd918ba4e23e1">ABS</a>(<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)   ((<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)>=0?(<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>):-(<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>))</td></tr>
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<tr class="memdesc:ae2f08dc603ae93c402abd918ba4e23e1"><td class="mdescLeft"> </td><td class="mdescRight">returns absolute value of a (|a|) <a href="ncbi__std_8h.html#ae2f08dc603ae93c402abd918ba4e23e1">More...</a><br /></td></tr>
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<tr class="separator:ae2f08dc603ae93c402abd918ba4e23e1"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a8c4a9e5e4622948245de4ec0b5d38329"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a8c4a9e5e4622948245de4ec0b5d38329">SIGN</a>(<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)   ((<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)>0?1:((<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)<0?-1:0))</td></tr>
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<tr class="memdesc:a8c4a9e5e4622948245de4ec0b5d38329"><td class="mdescLeft"> </td><td class="mdescRight">return +1 for a > 0, -1 for a < 0 <a href="ncbi__std_8h.html#a8c4a9e5e4622948245de4ec0b5d38329">More...</a><br /></td></tr>
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<tr class="separator:a8c4a9e5e4622948245de4ec0b5d38329"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:af338bbc0e9f35ea4955c32569d9f4c20"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#af338bbc0e9f35ea4955c32569d9f4c20">UINT4_MAX</a>   4294967295<a class="el" href="pcre2__jit__test_8c.html#affc9cbf86b78292bdb405361761c47f5">U</a></td></tr>
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<tr class="memdesc:af338bbc0e9f35ea4955c32569d9f4c20"><td class="mdescLeft"> </td><td class="mdescRight">largest number represented by unsigned int. <a href="ncbi__std_8h.html#af338bbc0e9f35ea4955c32569d9f4c20">More...</a><br /></td></tr>
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<tr class="separator:af338bbc0e9f35ea4955c32569d9f4c20"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a497ab6c8d50f09604029aa963308c642"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a497ab6c8d50f09604029aa963308c642">INT4_MAX</a>   2147483647</td></tr>
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<tr class="memdesc:a497ab6c8d50f09604029aa963308c642"><td class="mdescLeft"> </td><td class="mdescRight">largest nubmer represented by signed int <a href="ncbi__std_8h.html#a497ab6c8d50f09604029aa963308c642">More...</a><br /></td></tr>
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<tr class="separator:a497ab6c8d50f09604029aa963308c642"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:af5cf5b3418260d350ce9e65d3ed2b857"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#af5cf5b3418260d350ce9e65d3ed2b857">INT4_MIN</a>   (-2147483647-1)</td></tr>
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<tr class="memdesc:af5cf5b3418260d350ce9e65d3ed2b857"><td class="mdescLeft"> </td><td class="mdescRight">Smallest (most negative) number represented by signed int. <a href="ncbi__std_8h.html#af5cf5b3418260d350ce9e65d3ed2b857">More...</a><br /></td></tr>
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<tr class="separator:af5cf5b3418260d350ce9e65d3ed2b857"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a3ba1bf845247287a5b422dbf43e4759e"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a3ba1bf845247287a5b422dbf43e4759e">NCBIMATH_LN2</a>   0.69314718055994530941723212145818</td></tr>
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<tr class="memdesc:a3ba1bf845247287a5b422dbf43e4759e"><td class="mdescLeft"> </td><td class="mdescRight">natural log of 2. <a href="ncbi__std_8h.html#a3ba1bf845247287a5b422dbf43e4759e">More...</a><br /></td></tr>
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<tr class="separator:a3ba1bf845247287a5b422dbf43e4759e"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ac5a73a43dd440e692c97d0cb97835222"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#ac5a73a43dd440e692c97d0cb97835222">INT2_MAX</a>   32767</td></tr>
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<tr class="memdesc:ac5a73a43dd440e692c97d0cb97835222"><td class="mdescLeft"> </td><td class="mdescRight">largest number represented by signed (two byte) short <a href="ncbi__std_8h.html#ac5a73a43dd440e692c97d0cb97835222">More...</a><br /></td></tr>
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<tr class="separator:ac5a73a43dd440e692c97d0cb97835222"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:acb121621948e15398f6f61838729535d"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#acb121621948e15398f6f61838729535d">INT2_MIN</a>   (-32768)</td></tr>
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<tr class="memdesc:acb121621948e15398f6f61838729535d"><td class="mdescLeft"> </td><td class="mdescRight">smallest (most negative) number represented by signed (two byte) short <a href="ncbi__std_8h.html#acb121621948e15398f6f61838729535d">More...</a><br /></td></tr>
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<tr class="separator:acb121621948e15398f6f61838729535d"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a2e5738b4574e040bbe3370c5ca17164f"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a2e5738b4574e040bbe3370c5ca17164f">INT1_MAX</a>   127</td></tr>
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<tr class="memdesc:a2e5738b4574e040bbe3370c5ca17164f"><td class="mdescLeft"> </td><td class="mdescRight">largest number represented by signed short (one byte) <a href="ncbi__std_8h.html#a2e5738b4574e040bbe3370c5ca17164f">More...</a><br /></td></tr>
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<tr class="separator:a2e5738b4574e040bbe3370c5ca17164f"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a92576bcf8ddce22588799e1f2a472280"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a92576bcf8ddce22588799e1f2a472280">INT1_MIN</a>   (-128)</td></tr>
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<tr class="memdesc:a92576bcf8ddce22588799e1f2a472280"><td class="mdescLeft"> </td><td class="mdescRight">smallest (most negative) number represented by signed short (one byte) <a href="ncbi__std_8h.html#a92576bcf8ddce22588799e1f2a472280">More...</a><br /></td></tr>
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<tr class="separator:a92576bcf8ddce22588799e1f2a472280"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a04ce3e170f964b82055ba961d08c0ef8"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a04ce3e170f964b82055ba961d08c0ef8">DIM</a>(<a class="el" href="sljitNativePPC__common_8c.html#a70993d52766e31cb0157958a18aa499a">A</a>)   (sizeof(<a class="el" href="sljitNativePPC__common_8c.html#a70993d52766e31cb0157958a18aa499a">A</a>)/sizeof((<a class="el" href="sljitNativePPC__common_8c.html#a70993d52766e31cb0157958a18aa499a">A</a>)[0]))</td></tr>
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<tr class="memdesc:a04ce3e170f964b82055ba961d08c0ef8"><td class="mdescLeft"> </td><td class="mdescRight">dimension of an array. <a href="ncbi__std_8h.html#a04ce3e170f964b82055ba961d08c0ef8">More...</a><br /></td></tr>
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<tr class="separator:a04ce3e170f964b82055ba961d08c0ef8"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ae7a3d65abb978dde07ed7e92b1b34345"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#ae7a3d65abb978dde07ed7e92b1b34345">NULLB</a>   '\0'</td></tr>
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<tr class="memdesc:ae7a3d65abb978dde07ed7e92b1b34345"><td class="mdescLeft"> </td><td class="mdescRight">terminating byte of a char* string. <a href="ncbi__std_8h.html#ae7a3d65abb978dde07ed7e92b1b34345">More...</a><br /></td></tr>
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<tr class="separator:ae7a3d65abb978dde07ed7e92b1b34345"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:abf342df1a2f3ad640a7b5e8b807d0368"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#abf342df1a2f3ad640a7b5e8b807d0368">NCBI_CONST_INT8</a>(v)   v##LL</td></tr>
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<tr class="memdesc:abf342df1a2f3ad640a7b5e8b807d0368"><td class="mdescLeft"> </td><td class="mdescRight">64-bit integers <a href="ncbi__std_8h.html#abf342df1a2f3ad640a7b5e8b807d0368">More...</a><br /></td></tr>
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<tr class="separator:abf342df1a2f3ad640a7b5e8b807d0368"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ae43699a0c07dac2ac619751612e06e5c"><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#ae43699a0c07dac2ac619751612e06e5c">NCBI_CONST_UINT8</a>(v)   v##ULL</td></tr>
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<tr class="separator:ae43699a0c07dac2ac619751612e06e5c"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="typedef-members"></a>
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Typedefs</h2></td></tr>
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<tr class="memitem:a9f6121a7aa37a7e5487a28839b1f44a7"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__Portability.html#ga3d5f143aac289609ee1d4e4cf3d5b014">Uint1</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a9f6121a7aa37a7e5487a28839b1f44a7">Boolean</a></td></tr>
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<tr class="memdesc:a9f6121a7aa37a7e5487a28839b1f44a7"><td class="mdescLeft"> </td><td class="mdescRight">bool replacment for C <a href="ncbi__std_8h.html#a9f6121a7aa37a7e5487a28839b1f44a7">More...</a><br /></td></tr>
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<tr class="separator:a9f6121a7aa37a7e5487a28839b1f44a7"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a3786f70ab7091247a621d0d253967e13"><td class="memItemLeft" align="right" valign="top">typedef struct <a class="el" href="structListNode.html">ListNode</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a3786f70ab7091247a621d0d253967e13">ListNode</a></td></tr>
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<tr class="memdesc:a3786f70ab7091247a621d0d253967e13"><td class="mdescLeft"> </td><td class="mdescRight">A generic linked list node structure. <a href="ncbi__std_8h.html#a3786f70ab7091247a621d0d253967e13">More...</a><br /></td></tr>
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<tr class="separator:a3786f70ab7091247a621d0d253967e13"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
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Functions</h2></td></tr>
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<tr class="memitem:a4d7368c60fd6ece8b65fff641d1963b0"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a4d7368c60fd6ece8b65fff641d1963b0">BlastMemDup</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> void *<a class="el" href="introspection__html_8hpp.html#a52ba5809e303a6866b3d38ca85a4a3f0">orig</a>, size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
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<tr class="memdesc:a4d7368c60fd6ece8b65fff641d1963b0"><td class="mdescLeft"> </td><td class="mdescRight">Copies memory using memcpy and malloc. <a href="ncbi__std_8h.html#a4d7368c60fd6ece8b65fff641d1963b0">More...</a><br /></td></tr>
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<tr class="separator:a4d7368c60fd6ece8b65fff641d1963b0"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a0da3c3387a68d6ab305ec74d23e20bbe"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structListNode.html">ListNode</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a0da3c3387a68d6ab305ec74d23e20bbe">ListNodeNew</a> (<a class="el" href="structListNode.html">ListNode</a> *vnp)</td></tr>
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<tr class="memdesc:a0da3c3387a68d6ab305ec74d23e20bbe"><td class="mdescLeft"> </td><td class="mdescRight">Create a new list node. <a href="ncbi__std_8h.html#a0da3c3387a68d6ab305ec74d23e20bbe">More...</a><br /></td></tr>
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<tr class="separator:a0da3c3387a68d6ab305ec74d23e20bbe"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a43c64fed141d1aa009471c7b043bd0a7"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structListNode.html">ListNode</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a43c64fed141d1aa009471c7b043bd0a7">ListNodeAdd</a> (<a class="el" href="structListNode.html">ListNode</a> **<a class="el" href="ct__nlmzip__i_8h.html#a6d1197264c8235ebd5bda57ba423914e">head</a>)</td></tr>
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<tr class="memdesc:a43c64fed141d1aa009471c7b043bd0a7"><td class="mdescLeft"> </td><td class="mdescRight">Add a node to the list. <a href="ncbi__std_8h.html#a43c64fed141d1aa009471c7b043bd0a7">More...</a><br /></td></tr>
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<tr class="separator:a43c64fed141d1aa009471c7b043bd0a7"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ac52bd0ef0234329e277137a4c5eb9d86"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structListNode.html">ListNode</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#ac52bd0ef0234329e277137a4c5eb9d86">ListNodeAddPointer</a> (<a class="el" href="structListNode.html">ListNode</a> **<a class="el" href="ct__nlmzip__i_8h.html#a6d1197264c8235ebd5bda57ba423914e">head</a>, <a class="el" href="group__Portability.html#ga3d5f143aac289609ee1d4e4cf3d5b014">Uint1</a> choice, void *<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
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<tr class="memdesc:ac52bd0ef0234329e277137a4c5eb9d86"><td class="mdescLeft"> </td><td class="mdescRight">Add a node to the list with a given choice and data pointer. <a href="ncbi__std_8h.html#ac52bd0ef0234329e277137a4c5eb9d86">More...</a><br /></td></tr>
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<tr class="memitem:ae39885f45dab6585c9e0ba2fbb8bbde5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structListNode.html">ListNode</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#ae39885f45dab6585c9e0ba2fbb8bbde5">ListNodeFree</a> (<a class="el" href="structListNode.html">ListNode</a> *vnp)</td></tr>
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<tr class="memdesc:ae39885f45dab6585c9e0ba2fbb8bbde5"><td class="mdescLeft"> </td><td class="mdescRight">Free all list's nodes, does not attempt to free data. <a href="ncbi__std_8h.html#ae39885f45dab6585c9e0ba2fbb8bbde5">More...</a><br /></td></tr>
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<tr class="separator:ae39885f45dab6585c9e0ba2fbb8bbde5"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:adba585ef428fe1306a3c597b2968e4c8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structListNode.html">ListNode</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#adba585ef428fe1306a3c597b2968e4c8">ListNodeFreeData</a> (<a class="el" href="structListNode.html">ListNode</a> *vnp)</td></tr>
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<tr class="memdesc:adba585ef428fe1306a3c597b2968e4c8"><td class="mdescLeft"> </td><td class="mdescRight">Free nodes as well as data (vnp->ptr) assuming it is one contiguous chunk. <a href="ncbi__std_8h.html#adba585ef428fe1306a3c597b2968e4c8">More...</a><br /></td></tr>
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<tr class="memitem:a2df88245890c146ff6eef710634521fd"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structListNode.html">ListNode</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="ncbi__std_8h.html#a2df88245890c146ff6eef710634521fd">ListNodeCopyStr</a> (<a class="el" href="structListNode.html">ListNode</a> **<a class="el" href="ct__nlmzip__i_8h.html#a6d1197264c8235ebd5bda57ba423914e">head</a>, <a class="el" href="group__Portability.html#ga3d5f143aac289609ee1d4e4cf3d5b014">Uint1</a> choice, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *<a class="el" href="ftds14_2freetds_2odbc_2unittests_2stats_8c.html#a4b663c4af696ddbf3fc3e165d22a28a9">str</a>)</td></tr>
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<tr class="memdesc:a2df88245890c146ff6eef710634521fd"><td class="mdescLeft"> </td><td class="mdescRight">Add a node to the list with a provided choice, and attached data pointing to a provided string. <a href="ncbi__std_8h.html#a2df88245890c146ff6eef710634521fd">More...</a><br /></td></tr>
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</table>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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<div class="textblock"><p>Type and macro definitions from C toolkit that are not defined in C++ toolkit. </p>
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<p class="definition">Definition in file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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</div><h2 class="groupheader">Macro Definition Documentation</h2>
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<a id="ae2f08dc603ae93c402abd918ba4e23e1"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#ae2f08dc603ae93c402abd918ba4e23e1">◆ </a></span>ABS</h2>
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<td class="memname">#define ABS</td>
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<td>(</td>
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<td class="paramname"><a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a></td><td>)</td>
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<td>   ((<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)>=0?(<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>):-(<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>))</td>
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<p>returns absolute value of a (|a|) </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00122">122</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#af343b20373ba49a92fce523e948f2ab3">◆ </a></span>ASSERT</h2>
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<td class="memname">#define ASSERT   <a class="el" href="srv__diag_8hpp.html#af576bf8ffa22a44e53018c67095ffbf0">assert</a></td>
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<p>macro for assert. </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00107">107</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a04ce3e170f964b82055ba961d08c0ef8">◆ </a></span>DIM</h2>
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<td class="memname">#define DIM</td>
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<td>(</td>
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<td class="paramname"><a class="el" href="sljitNativePPC__common_8c.html#a70993d52766e31cb0157958a18aa499a">A</a></td><td>)</td>
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<td>   (sizeof(<a class="el" href="sljitNativePPC__common_8c.html#a70993d52766e31cb0157958a18aa499a">A</a>)/sizeof((<a class="el" href="sljitNativePPC__common_8c.html#a70993d52766e31cb0157958a18aa499a">A</a>)[0]))</td>
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<p>dimension of an array. </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00176">176</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#aa93f0eb578d23995850d61f7d61c55c1">◆ </a></span>FALSE</h2>
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<td class="memname">#define FALSE   0</td>
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<p>bool replacment for C indicating false. </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00101">101</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a2e5738b4574e040bbe3370c5ca17164f">◆ </a></span>INT1_MAX</h2>
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<td class="memname">#define INT1_MAX   127</td>
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<p>largest number represented by signed short (one byte) </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00166">166</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<a id="a92576bcf8ddce22588799e1f2a472280"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a92576bcf8ddce22588799e1f2a472280">◆ </a></span>INT1_MIN</h2>
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<td class="memname">#define INT1_MIN   (-128)</td>
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<p>smallest (most negative) number represented by signed short (one byte) </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00171">171</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#ac5a73a43dd440e692c97d0cb97835222">◆ </a></span>INT2_MAX</h2>
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<td class="memname">#define INT2_MAX   32767</td>
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<p>largest number represented by signed (two byte) short </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00156">156</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<a id="acb121621948e15398f6f61838729535d"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#acb121621948e15398f6f61838729535d">◆ </a></span>INT2_MIN</h2>
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<td class="memname">#define INT2_MIN   (-32768)</td>
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<p>smallest (most negative) number represented by signed (two byte) short </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00161">161</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a497ab6c8d50f09604029aa963308c642">◆ </a></span>INT4_MAX</h2>
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<td class="memname">#define INT4_MAX   2147483647</td>
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<p>largest nubmer represented by signed int </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00141">141</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#af5cf5b3418260d350ce9e65d3ed2b857">◆ </a></span>INT4_MIN</h2>
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<td class="memname">#define INT4_MIN   (-2147483647-1)</td>
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<p>Smallest (most negative) number represented by signed int. </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00146">146</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#afa99ec4acc4ecb2dc3c2d05da15d0e3f">◆ </a></span>MAX</h2>
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<td>)</td>
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<td></td><td>   ((<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)>=(<a class="el" href="ncbi__localip_8c.html#a790d5baa17ec7aaf7bb49750a16e9c29">b</a>)?(<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>):(<a class="el" href="ncbi__localip_8c.html#a790d5baa17ec7aaf7bb49750a16e9c29">b</a>))</td>
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<p>returns larger of a and b. </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00117">117</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a3acffbd305ee72dcd4593c0d8af64a4f">◆ </a></span>MIN</h2>
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<td class="paramtype"> </td>
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<td class="paramname"><a class="el" href="ncbi__localip_8c.html#a790d5baa17ec7aaf7bb49750a16e9c29">b</a> </td>
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<td></td>
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<td>)</td>
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<td></td><td>   ((<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)>(<a class="el" href="ncbi__localip_8c.html#a790d5baa17ec7aaf7bb49750a16e9c29">b</a>)?(<a class="el" href="ncbi__localip_8c.html#a790d5baa17ec7aaf7bb49750a16e9c29">b</a>):(<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>))</td>
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<p>returns smaller of a and b. </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00112">112</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<a id="abf342df1a2f3ad640a7b5e8b807d0368"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#abf342df1a2f3ad640a7b5e8b807d0368">◆ </a></span>NCBI_CONST_INT8</h2>
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<td class="memname">#define NCBI_CONST_INT8</td>
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<td class="paramname">v</td><td>)</td>
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<td>   v##LL</td>
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<p>64-bit integers </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00195">195</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<a id="ae43699a0c07dac2ac619751612e06e5c"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#ae43699a0c07dac2ac619751612e06e5c">◆ </a></span>NCBI_CONST_UINT8</h2>
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<td class="memname">#define NCBI_CONST_UINT8</td>
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<td class="paramname">v</td><td>)</td>
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<td>   v##ULL</td>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00196">196</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<a id="a77e48a8fb427aed3e9fd3cd5915354ab"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a77e48a8fb427aed3e9fd3cd5915354ab">◆ </a></span>NCBI_INLINE</h2>
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<td class="memname">#define NCBI_INLINE   inline</td>
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<p>"inline" seems to work on our remaining in-house compilers (WorkShop, Compaq, ICC, MPW) </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00081">81</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<a id="a3ba1bf845247287a5b422dbf43e4759e"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a3ba1bf845247287a5b422dbf43e4759e">◆ </a></span>NCBIMATH_LN2</h2>
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<td class="memname">#define NCBIMATH_LN2   0.69314718055994530941723212145818</td>
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<p>natural log of 2. </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00151">151</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<a id="ae7a3d65abb978dde07ed7e92b1b34345"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#ae7a3d65abb978dde07ed7e92b1b34345">◆ </a></span>NULLB</h2>
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<td class="memname">#define NULLB   '\0'</td>
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<p>terminating byte of a char* string. </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00181">181</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<a id="a8c4a9e5e4622948245de4ec0b5d38329"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a8c4a9e5e4622948245de4ec0b5d38329">◆ </a></span>SIGN</h2>
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<td class="memname">#define SIGN</td>
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<td>(</td>
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<td class="paramtype"> </td>
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<td class="paramname"><a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a></td><td>)</td>
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<td>   ((<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)>0?1:((<a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)<0?-1:0))</td>
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<p>return +1 for a > 0, -1 for a < 0 </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00127">127</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<a id="aa8cecfc5c5c054d2875c03e77b7be15d"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#aa8cecfc5c5c054d2875c03e77b7be15d">◆ </a></span>TRUE</h2>
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<td class="memname">#define TRUE   1</td>
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<p>bool replacment for C indicating true. </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00097">97</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<a id="af338bbc0e9f35ea4955c32569d9f4c20"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#af338bbc0e9f35ea4955c32569d9f4c20">◆ </a></span>UINT4_MAX</h2>
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<td class="memname">#define UINT4_MAX   4294967295<a class="el" href="pcre2__jit__test_8c.html#affc9cbf86b78292bdb405361761c47f5">U</a></td>
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<p>largest number represented by unsigned int. </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00136">136</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<h2 class="groupheader">Typedef Documentation</h2>
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<a id="a9f6121a7aa37a7e5487a28839b1f44a7"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a9f6121a7aa37a7e5487a28839b1f44a7">◆ </a></span>Boolean</h2>
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<td class="memname">typedef <a class="el" href="group__Portability.html#ga3d5f143aac289609ee1d4e4cf3d5b014">Uint1</a> <a class="el" href="ncbi__std_8h.html#a9f6121a7aa37a7e5487a28839b1f44a7">Boolean</a></td>
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<p>bool replacment for C </p>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8h_source.html#l00094">94</a> of file <a class="el" href="ncbi__std_8h_source.html">ncbi_std.h</a>.</p>
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<a id="a3786f70ab7091247a621d0d253967e13"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a3786f70ab7091247a621d0d253967e13">◆ </a></span>ListNode</h2>
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<td class="memname">typedef struct <a class="el" href="structListNode.html">ListNode</a> <a class="el" href="structListNode.html">ListNode</a></td>
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<p>A generic linked list node structure. </p>
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<h2 class="groupheader">Function Documentation</h2>
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<a id="a4d7368c60fd6ece8b65fff641d1963b0"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a4d7368c60fd6ece8b65fff641d1963b0">◆ </a></span>BlastMemDup()</h2>
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<td class="memname">void* BlastMemDup </td>
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<td>(</td>
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<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> void * </td>
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<td class="paramname"><em>orig</em>, </td>
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<p>Copies memory using memcpy and malloc. </p>
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<tr><td class="paramname">orig</td><td>memory to be copied [in] </td></tr>
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<dl class="section return"><dt>Returns</dt><dd>pointer to newly allocated memory. NULL if orig NULL, size is zero, or allocation fails. </dd></dl>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8c_source.html#l00035">35</a> of file <a class="el" href="ncbi__std_8c_source.html">ncbi_std.c</a>.</p>
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<p class="reference">References <a class="el" href="njn__matrix_8hpp_source.html#l00613">copy()</a>, <a class="el" href="zlib__cloudflare_2gzguts_8h.html#adacbf80ddc99f9a9e0f6aa2bbf1fb0e9">malloc()</a>, <a class="el" href="ctools_2ctransition_2ncbistd_8hpp_source.html#l00225">NULL</a>, <a class="el" href="introspection__html_8hpp_source.html#l00126">orig</a>, and <a class="el" href="namespacencbi_1_1grid_1_1netcache_1_1search_1_1fields.html#a0f3896dcec83a75496951b513af45a54">ncbi::grid::netcache::search::fields::size</a>.</p>
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<p class="reference">Referenced by <a class="el" href="blast__hits_8c_source.html#l00264">Blast_HSPClone()</a>, <a class="el" href="blast__setup_8c_source.html#l01065">Blast_SetPHIPatternInfo()</a>, <a class="el" href="blast__traceback_8c_source.html#l00259">Blast_TracebackFromHSPList()</a>, <a class="el" href="blast__query__info_8c_source.html#l00116">BlastQueryInfoDup()</a>, <a class="el" href="blast__options_8c_source.html#l00956">BlastScoringOptionsDup()</a>, <a class="el" href="blast__seqsrc_8c_source.html#l00138">BlastSeqSrcCopy()</a>, <a class="el" href="blast__util_8c_source.html#l00259">BlastSequenceBlkCopy()</a>, <a class="el" href="blast__filter_8c_source.html#l01350">BlastSetUp_MaskQuery()</a>, <a class="el" href="blasthits__unit__test_8cpp_source.html#l00647">BOOST_AUTO_TEST_CASE()</a>, <a class="el" href="blast__dynarray_8c_source.html#l00342">DynamicSGenCodeNodeArray_Append()</a>, <a class="el" href="blast__hits_8c_source.html#l00236">s_BlastHSPCopy()</a>, <a class="el" href="blast__stat_8c_source.html#l03238">s_GetNuclValuesArray()</a>, <a class="el" href="blast__setup_8c_source.html#l00137">s_PHIScoreBlkFill()</a>, <a class="el" href="blasthits__unit__test_8cpp_source.html#l00786">s_SetupSequencesForGappedReevaluateTest()</a>, <a class="el" href="blasthits__unit__test_8cpp_source.html#l00467">s_SetupSequencesForUngappedReevaluateNucl()</a>, <a class="el" href="blasthits__unit__test_8cpp_source.html#l00606">s_SetupSequencesForUngappedReevaluateTransl()</a>, <a class="el" href="pattern_8c_source.html#l00507">SPHIQueryInfoCopy()</a>, <a class="el" href="blast__options__local__priv_8cpp_source.html#l00304">CBlastOptionsLocal::x_Copy_CBlastDatabaseOptions()</a>, <a class="el" href="blast__options__local__priv_8cpp_source.html#l00325">CBlastOptionsLocal::x_Copy_CBlastEffectiveLengthsOptions()</a>, <a class="el" href="blast__options__local__priv_8cpp_source.html#l00237">CBlastOptionsLocal::x_Copy_CBlastExtensionOptions()</a>, <a class="el" href="blast__options__local__priv_8cpp_source.html#l00249">CBlastOptionsLocal::x_Copy_CBlastHitSavingOptions()</a>, <a class="el" href="blast__options__local__priv_8cpp_source.html#l00225">CBlastOptionsLocal::x_Copy_CBlastInitialWordOptions()</a>, <a class="el" href="blast__options__local__priv_8cpp_source.html#l00207">CBlastOptionsLocal::x_Copy_CLookupTableOptions()</a>, <a class="el" href="blast__options__local__priv_8cpp_source.html#l00292">CBlastOptionsLocal::x_Copy_CPSIBlastOptions()</a>, and <a class="el" href="blast__options__local__priv_8cpp_source.html#l00120">CBlastOptionsLocal::x_Copy_CQuerySetUpOptions()</a>.</p>
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<td class="memname"><a class="el" href="structListNode.html">ListNode</a>* ListNodeAdd </td>
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<p>Add a node to the list. </p>
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<dl class="section return"><dt>Returns</dt><dd>New node </dd></dl>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8c_source.html#l00077">77</a> of file <a class="el" href="ncbi__std_8c_source.html">ncbi_std.c</a>.</p>
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<p class="reference">References <a class="el" href="ct__nlmzip__i_8h_source.html#l00138">head</a>, <a class="el" href="ncbi__std_8c_source.html#l00055">ListNodeNew()</a>, and <a class="el" href="ctools_2ctransition_2ncbistd_8hpp_source.html#l00225">NULL</a>.</p>
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<p class="reference">Referenced by <a class="el" href="ncbi__std_8c_source.html#l00099">ListNodeAddPointer()</a>, and <a class="el" href="ncbi__std_8c_source.html#l00124">ListNodeCopyStr()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#ac52bd0ef0234329e277137a4c5eb9d86">◆ </a></span>ListNodeAddPointer()</h2>
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<td>(</td>
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<td class="paramtype"><a class="el" href="group__Portability.html#ga3d5f143aac289609ee1d4e4cf3d5b014">Uint1</a> </td>
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<p>Add a node to the list with a given choice and data pointer. </p>
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<table class="params">
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<tr><td class="paramname">head</td><td>Pointer to the start of the list, if *head is NULL will be Pointer to new node. [in] [out] </td></tr>
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<tr><td class="paramname">choice</td><td>Choice value for the new node. [in] </td></tr>
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<tr><td class="paramname">value</td><td>Data pointer for the new node. [in] </td></tr>
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</table>
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</dd>
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</dl>
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<dl class="section return"><dt>Returns</dt><dd>New node </dd></dl>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8c_source.html#l00099">99</a> of file <a class="el" href="ncbi__std_8c_source.html">ncbi_std.c</a>.</p>
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<p class="reference">References <a class="el" href="ncbi__std_8h_source.html#l00214">ListNode::choice</a>, <a class="el" href="ct__nlmzip__i_8h_source.html#l00138">head</a>, <a class="el" href="ncbi__std_8c_source.html#l00077">ListNodeAdd()</a>, <a class="el" href="ctools_2ctransition_2ncbistd_8hpp_source.html#l00225">NULL</a>, <a class="el" href="ncbi__std_8h_source.html#l00215">ListNode::ptr</a>, and <a class="el" href="pointer_8h_source.html#l01227">rapidjson::value</a>.</p>
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<p class="reference">Referenced by <a class="el" href="blast__stat_8c_source.html#l02952">BlastLoadMatrixValues()</a>.</p>
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</div>
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</div>
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<a id="a2df88245890c146ff6eef710634521fd"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a2df88245890c146ff6eef710634521fd">◆ </a></span>ListNodeCopyStr()</h2>
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<div class="memitem">
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<div class="memproto">
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<table class="memname">
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<td class="memname"><a class="el" href="structListNode.html">ListNode</a>* ListNodeCopyStr </td>
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<td>(</td>
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<td class="paramtype"><a class="el" href="structListNode.html">ListNode</a> ** </td>
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<td class="paramname"><em>head</em>, </td>
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</tr>
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<tr>
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<td class="paramkey"></td>
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<td></td>
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<td class="paramtype"><a class="el" href="group__Portability.html#ga3d5f143aac289609ee1d4e4cf3d5b014">Uint1</a> </td>
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<td class="paramname"><em>choice</em>, </td>
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</tr>
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<tr>
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<td class="paramkey"></td>
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<td></td>
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<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char * </td>
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<td class="paramname"><em>str</em> </td>
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</tr>
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<tr>
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<td></td>
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<td>)</td>
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<td></td><td></td>
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</tr>
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</table>
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</div><div class="memdoc">
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<p>Add a node to the list with a provided choice, and attached data pointing to a provided string. </p>
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<dl class="params"><dt>Parameters</dt><dd>
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<table class="params">
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<tr><td class="paramname">head</td><td>Pointer to the start of the list, if *head is NULL will be Pointer to new node. [in] [out] </td></tr>
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<tr><td class="paramname">choice</td><td>sets the "choice" field in <a class="el" href="structListNode.html" title="A generic linked list node structure.">ListNode</a> [in] </td></tr>
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<tr><td class="paramname">str</td><td>char* buffer to be copied [in] </td></tr>
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</table>
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</dd>
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</dl>
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<dl class="section return"><dt>Returns</dt><dd>newly allocated node </dd></dl>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8c_source.html#l00124">124</a> of file <a class="el" href="ncbi__std_8c_source.html">ncbi_std.c</a>.</p>
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<p class="reference">References <a class="el" href="ncbi__std_8h_source.html#l00214">ListNode::choice</a>, <a class="el" href="ct__nlmzip__i_8h_source.html#l00138">head</a>, <a class="el" href="ncbi__std_8c_source.html#l00077">ListNodeAdd()</a>, <a class="el" href="ctools_2ctransition_2ncbistd_8hpp_source.html#l00225">NULL</a>, <a class="el" href="ncbi__std_8h_source.html#l00215">ListNode::ptr</a>, <a class="el" href="ftds100_2freetds_2odbc_2unittests_2stats_8c_source.html#l00084">str()</a>, and <a class="el" href="ncbi__ansi__ext_8h_source.html#l00070">strdup</a>.</p>
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<p class="reference">Referenced by <a class="el" href="blast__stat_8c_source.html#l01151">BlastScoreBlkNucleotideMatrixRead()</a>, and <a class="el" href="blast__stat_8c_source.html#l01351">BlastScoreBlkProteinMatrixRead()</a>.</p>
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</div>
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</div>
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<a id="ae39885f45dab6585c9e0ba2fbb8bbde5"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#ae39885f45dab6585c9e0ba2fbb8bbde5">◆ </a></span>ListNodeFree()</h2>
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<div class="memitem">
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<div class="memproto">
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<table class="memname">
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<tr>
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<td class="memname"><a class="el" href="structListNode.html">ListNode</a>* ListNodeFree </td>
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<td>(</td>
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<td class="paramtype"><a class="el" href="structListNode.html">ListNode</a> * </td>
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<td class="paramname"><em>vnp</em></td><td>)</td>
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<td></td>
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</tr>
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</table>
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</div><div class="memdoc">
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<p>Free all list's nodes, does not attempt to free data. </p>
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<dl class="params"><dt>Parameters</dt><dd>
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<table class="params">
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<tr><td class="paramname">vnp</td><td>objects to be freed [in] </td></tr>
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</table>
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</dd>
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</dl>
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<dl class="section return"><dt>Returns</dt><dd>NULL </dd></dl>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8c_source.html#l00148">148</a> of file <a class="el" href="ncbi__std_8c_source.html">ncbi_std.c</a>.</p>
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<p class="reference">References <a class="el" href="ncbi__std_8h_source.html#l00216">ListNode::next</a>, <a class="el" href="ftds100_2freetds_2freetds_2dlist_8tmpl_8h_source.html#l00056">next()</a>, <a class="el" href="ctools_2ctransition_2ncbistd_8hpp_source.html#l00225">NULL</a>, and <a class="el" href="blast__def_8h_source.html#l00112">sfree</a>.</p>
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<p class="reference">Referenced by <a class="el" href="blast__stat_8c_source.html#l02929">BlastMatrixValuesDestruct()</a>.</p>
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</div>
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</div>
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<a id="adba585ef428fe1306a3c597b2968e4c8"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#adba585ef428fe1306a3c597b2968e4c8">◆ </a></span>ListNodeFreeData()</h2>
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<div class="memitem">
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<div class="memproto">
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<table class="memname">
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<tr>
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<td class="memname"><a class="el" href="structListNode.html">ListNode</a>* ListNodeFreeData </td>
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<td>(</td>
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<td class="paramtype"><a class="el" href="structListNode.html">ListNode</a> * </td>
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<td class="paramname"><em>vnp</em></td><td>)</td>
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<td></td>
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</tr>
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</table>
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</div><div class="memdoc">
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<p>Free nodes as well as data (vnp->ptr) assuming it is one contiguous chunk. </p>
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<dl class="params"><dt>Parameters</dt><dd>
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<table class="params">
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<tr><td class="paramname">vnp</td><td>objects to be freed [in] </td></tr>
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</table>
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</dd>
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</dl>
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<dl class="section return"><dt>Returns</dt><dd>NULL </dd></dl>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8c_source.html#l00169">169</a> of file <a class="el" href="ncbi__std_8c_source.html">ncbi_std.c</a>.</p>
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<p class="reference">References <a class="el" href="ncbi__std_8h_source.html#l00216">ListNode::next</a>, <a class="el" href="ftds100_2freetds_2freetds_2dlist_8tmpl_8h_source.html#l00056">next()</a>, <a class="el" href="ctools_2ctransition_2ncbistd_8hpp_source.html#l00225">NULL</a>, <a class="el" href="ncbi__std_8h_source.html#l00215">ListNode::ptr</a>, and <a class="el" href="blast__def_8h_source.html#l00112">sfree</a>.</p>
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<p class="reference">Referenced by <a class="el" href="blast__stat_8c_source.html#l00965">BlastScoreBlkFree()</a>.</p>
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</div>
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</div>
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<a id="a0da3c3387a68d6ab305ec74d23e20bbe"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a0da3c3387a68d6ab305ec74d23e20bbe">◆ </a></span>ListNodeNew()</h2>
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<div class="memitem">
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<div class="memproto">
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<table class="memname">
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<tr>
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<td class="memname"><a class="el" href="structListNode.html">ListNode</a>* ListNodeNew </td>
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<td>(</td>
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<td class="paramtype"><a class="el" href="structListNode.html">ListNode</a> * </td>
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<td class="paramname"><em>vnp</em></td><td>)</td>
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<td></td>
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</tr>
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</table>
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</div><div class="memdoc">
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<p>Create a new list node. </p>
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<dl class="params"><dt>Parameters</dt><dd>
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<table class="params">
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<tr><td class="paramname">vnp</td><td>Pointer to the start of the list, may be NULL [in] </td></tr>
|
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</table>
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</dd>
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</dl>
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<dl class="section return"><dt>Returns</dt><dd>newly allocated node </dd></dl>
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<p class="definition">Definition at line <a class="el" href="ncbi__std_8c_source.html#l00055">55</a> of file <a class="el" href="ncbi__std_8c_source.html">ncbi_std.c</a>.</p>
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<p class="reference">References <a class="el" href="zlib__cloudflare_2zutil_8c.html#a0659e28c2a1d3b0b2f8c3564c6645f9c">calloc()</a>, <a class="el" href="ncbi__std_8h_source.html#l00216">ListNode::next</a>, and <a class="el" href="ctools_2ctransition_2ncbistd_8hpp_source.html#l00225">NULL</a>.</p>
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<p class="reference">Referenced by <a class="el" href="ncbi__std_8c_source.html#l00077">ListNodeAdd()</a>.</p>
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</div>
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</div>
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</div><!-- contents -->
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<!-- start footer part -->
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<hr class="footer"/><address class="footer"><small>
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Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.0
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</small></address>
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<address style="align: right;"><small>Modified on Fri Sep 20 14:57:09 2024 by modify_doxy.py rev. 669887</small></address>
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</body>
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</html>
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