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<div id="projectname">NCBI C++ ToolKit
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<div class="header">
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<div class="summary">
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<a href="#pub-types">Public Types</a> |
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<a href="#pub-methods">Public Member Functions</a> |
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<a href="#pro-methods">Protected Member Functions</a> |
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<a href="#pro-attribs">Protected Attributes</a> |
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<a href="#pri-types">Private Types</a> |
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<a href="#pri-methods">Private Member Functions</a> |
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<a href="#friends">Friends</a> |
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<a href="classCGC__Sequence-members.html">List of all members</a> </div>
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<div class="headertitle">
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<div class="title">CGC_Sequence Class Reference</div> </div>
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</div><!--header-->
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<div class="contents">
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<p>
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<a class="el" href = "https://www.ncbi.nlm.nih.gov/toolkitbookgh/?term=CGC_Sequence">Search Toolkit Book for <i>CGC_Sequence</i></a>
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</p>
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<p><code>#include <<a class="el" href="GC__Sequence_8hpp_source.html">objects/genomecoll/GC_Sequence.hpp</a>></code></p>
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<div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
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<img id="dynsection-0-trigger" src="closed.png" alt="+"/> Inheritance diagram for CGC_Sequence:</div>
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<div id="dynsection-0-summary" class="dynsummary" style="display:block;">
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</div>
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<div id="dynsection-0-content" class="dyncontent" style="display:none;">
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<div class="center"><img src="img__inherit__graph/classCGC__Sequence__inherit__graph.png" border="0" usemap="#aCGC__Sequence_inherit__map" alt="Inheritance graph"/></div>
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<map name="aCGC__Sequence_inherit__map" id="aCGC__Sequence_inherit__map">
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<div id="dynsection-1" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
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<img id="dynsection-1-trigger" src="closed.png" alt="+"/> Collaboration diagram for CGC_Sequence:</div>
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<div id="dynsection-1-summary" class="dynsummary" style="display:block;">
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</div>
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<div id="dynsection-1-content" class="dyncontent" style="display:none;">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
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Public Types</h2></td></tr>
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<tr class="memitem:aafb4f2050e6254a6eda2f5cafc8c0770"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#aafb4f2050e6254a6eda2f5cafc8c0770">EChildrenSubset</a> { <a class="el" href="classCGC__Sequence.html#aafb4f2050e6254a6eda2f5cafc8c0770afacc32eaf20dca602ed26c780508c001">eScaffold</a>
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, <a class="el" href="classCGC__Sequence.html#aafb4f2050e6254a6eda2f5cafc8c0770a6df0babf6b019058863e8b38dece5b8e">eComponent</a>
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, <a class="el" href="classCGC__Sequence.html#aafb4f2050e6254a6eda2f5cafc8c0770a4790f6fb0a5c046fc7f1920eec759e5b">eAll</a>
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}</td></tr>
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<tr class="separator:aafb4f2050e6254a6eda2f5cafc8c0770"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a0d82fcbe388f97270be93e2c4b799dd2"><td class="memItemLeft" align="right" valign="top">typedef list< <a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a0d82fcbe388f97270be93e2c4b799dd2">TSequenceList</a></td></tr>
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<tr class="separator:a0d82fcbe388f97270be93e2c4b799dd2"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_types_classCGC__Sequence__Base"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCGC__Sequence__Base')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classCGC__Sequence__Base.html">CGC_Sequence_Base</a></td></tr>
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<tr class="memitem:ga859a0f0b77f41c7345b85591fc8e9069 inherit pub_types_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga859a0f0b77f41c7345b85591fc8e9069">EPatch_type</a> { <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga859a0f0b77f41c7345b85591fc8e9069a5092f89092b5382533d949a69d7ba451">ePatch_type_novel</a> = 0
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, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga859a0f0b77f41c7345b85591fc8e9069a2857326feca96036e496fa8294dec1eb">ePatch_type_other</a> = 255
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}</td></tr>
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<tr class="separator:ga859a0f0b77f41c7345b85591fc8e9069 inherit pub_types_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga8ce0cf5828495595850fd6e24c92e6c9 inherit pub_types_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">enum class  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga8ce0cf5828495595850fd6e24c92e6c9">E_memberIndex</a> { <br />
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  <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga8ce0cf5828495595850fd6e24c92e6c9ad2c4d82f7037e318e1aa6f58d06bd153">e__allMandatory</a> = 0
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, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga8ce0cf5828495595850fd6e24c92e6c9adc766ac4a1fc7336d130278f975f2b2f">e_seq_id</a>
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, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga8ce0cf5828495595850fd6e24c92e6c9af316fa1809c73fd6a5a172e3abc9603c">e_seq_id_synonyms</a>
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, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga8ce0cf5828495595850fd6e24c92e6c9acb6d5a0e3244a150f58402ea929e5b95">e_descr</a>
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, <br />
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  <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga8ce0cf5828495595850fd6e24c92e6c9afde1eb1b8698d107b7a5cbdb0e781e55">e_annot</a>
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, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga8ce0cf5828495595850fd6e24c92e6c9adcf811a32353be1e3d5591fa05fcd82f">e_sequences</a>
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, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga8ce0cf5828495595850fd6e24c92e6c9aa46e657e3c02d65d1f3ae7c7035ee66f">e_structure</a>
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, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga8ce0cf5828495595850fd6e24c92e6c9abd797b007773cd3daee040ac2da4f8d8">e_stats</a>
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, <br />
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  <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga8ce0cf5828495595850fd6e24c92e6c9addfb86e52c837cadc77a34eb5f9b5ff3">e_patch_type</a>
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, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gga8ce0cf5828495595850fd6e24c92e6c9acb519d04dfbfe72ad85dc1be070cbac8">e_roles</a>
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<br />
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}</td></tr>
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<tr class="separator:ga8ce0cf5828495595850fd6e24c92e6c9 inherit pub_types_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga6620c36f7cd7a482838ac7827003f871 inherit pub_types_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCSeq__id.html">CSeq_id</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga6620c36f7cd7a482838ac7827003f871">TSeq_id</a></td></tr>
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<tr class="separator:ga6620c36f7cd7a482838ac7827003f871 inherit pub_types_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga5452ad18860da8c421925d7ec1dd0aaa inherit pub_types_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">typedef list< <a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCGC__TypedSeqId.html">CGC_TypedSeqId</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga5452ad18860da8c421925d7ec1dd0aaa">TSeq_id_synonyms</a></td></tr>
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<tr class="separator:ga5452ad18860da8c421925d7ec1dd0aaa inherit pub_types_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga89280dfbbabb3f6277f71a629cd31950 inherit pub_types_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCSeq__descr.html">CSeq_descr</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga89280dfbbabb3f6277f71a629cd31950">TDescr</a></td></tr>
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<tr class="separator:ga89280dfbbabb3f6277f71a629cd31950 inherit pub_types_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga2f9e03e126834257e6173f0321c69730 inherit pub_types_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">typedef list< <a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCSeq__annot.html">CSeq_annot</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga2f9e03e126834257e6173f0321c69730">TAnnot</a></td></tr>
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<tr class="separator:ga2f9e03e126834257e6173f0321c69730 inherit pub_types_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga944f914dfb372dba2c053f539d683666 inherit pub_types_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">typedef list< <a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCGC__TaggedSequences.html">CGC_TaggedSequences</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga944f914dfb372dba2c053f539d683666">TSequences</a></td></tr>
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<tr class="separator:ga944f914dfb372dba2c053f539d683666 inherit pub_types_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga93c5799e5abe14063355e70656ee4e71 inherit pub_types_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCDelta__ext.html">CDelta_ext</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga93c5799e5abe14063355e70656ee4e71">TStructure</a></td></tr>
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<tr class="separator:ga93c5799e5abe14063355e70656ee4e71 inherit pub_types_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga54ae83e5a9c25ea80cb3ec634a2f156a inherit pub_types_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCGC__SequenceStats.html">CGC_SequenceStats</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga54ae83e5a9c25ea80cb3ec634a2f156a">TStats</a></td></tr>
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<tr class="separator:ga54ae83e5a9c25ea80cb3ec634a2f156a inherit pub_types_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga5e2d1bb7b4cd395c8215a170c9b2735b inherit pub_types_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga5e2d1bb7b4cd395c8215a170c9b2735b">TPatch_type</a></td></tr>
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<tr class="separator:ga5e2d1bb7b4cd395c8215a170c9b2735b inherit pub_types_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaff609a946f5ceb168e3bb14192f4c1bf inherit pub_types_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">typedef list< <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaff609a946f5ceb168e3bb14192f4c1bf">TRoles</a></td></tr>
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<tr class="separator:gaff609a946f5ceb168e3bb14192f4c1bf inherit pub_types_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga1c92ef7660d2505ede61a0d04a2dff0b inherit pub_types_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCSerialObject_1_1CMemberIndex.html">Tparent::CMemberIndex</a>< <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga8ce0cf5828495595850fd6e24c92e6c9">E_memberIndex</a>, 10 > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga1c92ef7660d2505ede61a0d04a2dff0b">TmemberIndex</a></td></tr>
|
||
<tr class="separator:ga1c92ef7660d2505ede61a0d04a2dff0b inherit pub_types_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_types_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCObject')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> { <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca2b8c59f649cc88eeb7eaeba939e2838d">eAllocFillNone</a> = 1
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca336d7ff658b673c2e8fe3aed9b155f04">eAllocFillZero</a>
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588ccab3631bf1c36b77f950d94372290deb76">eAllocFillPattern</a>
|
||
}</td></tr>
|
||
<tr class="memdesc:ga3cf5f3ac0aef32c4aab1fa66513588cc"><td class="mdescLeft"> </td><td class="mdescRight">Control filling of newly allocated memory. <a href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCObjectCounterLocker.html">CObjectCounterLocker</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">TLockerType</a></td></tr>
|
||
<tr class="memdesc:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Default locker type for <a class="el" href="classCRef.html" title="CRef –.">CRef</a>. <a href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">More...</a><br /></td></tr>
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||
<tr class="separator:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef atomic< <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">TCounter</a></td></tr>
|
||
<tr class="memdesc:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Counter type is CAtomiCounter. <a href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">More...</a><br /></td></tr>
|
||
<tr class="separator:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a></td></tr>
|
||
<tr class="memdesc:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Alias for value type of counter. <a href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
|
||
Public Member Functions</h2></td></tr>
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||
<tr class="memitem:aff5f03c8a7bbfb1d7d9e9fcb550e0b44"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#aff5f03c8a7bbfb1d7d9e9fcb550e0b44">CGC_Sequence</a> (void)</td></tr>
|
||
<tr class="separator:aff5f03c8a7bbfb1d7d9e9fcb550e0b44"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ac78905f368ac10dcfa39dbb21c17408c"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#ac78905f368ac10dcfa39dbb21c17408c">~CGC_Sequence</a> (void)</td></tr>
|
||
<tr class="separator:ac78905f368ac10dcfa39dbb21c17408c"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a265e63003e17de3aca9cfc33dfe9fac3"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__AssemblyUnit.html">CGC_AssemblyUnit</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a265e63003e17de3aca9cfc33dfe9fac3">GetAssemblyUnit</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a265e63003e17de3aca9cfc33dfe9fac3"><td class="mdescLeft"> </td><td class="mdescRight">Access the assembly unit the sequence belongs to. <a href="classCGC__Sequence.html#a265e63003e17de3aca9cfc33dfe9fac3">More...</a><br /></td></tr>
|
||
<tr class="separator:a265e63003e17de3aca9cfc33dfe9fac3"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a53e201063856d2afb72bb6879b67636d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a53e201063856d2afb72bb6879b67636d">GetFullAssembly</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a53e201063856d2afb72bb6879b67636d"><td class="mdescLeft"> </td><td class="mdescRight">Access the most specific full assembly the sequence belongs to This is needed because assemblies are packaged as sets of assemblies; knowing the unit is not always enough. <a href="classCGC__Sequence.html#a53e201063856d2afb72bb6879b67636d">More...</a><br /></td></tr>
|
||
<tr class="separator:a53e201063856d2afb72bb6879b67636d"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a1a222e4de7452cc6e3616bf96f268bde"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Replicon.html">CGC_Replicon</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a1a222e4de7452cc6e3616bf96f268bde">GetReplicon</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:a1a222e4de7452cc6e3616bf96f268bde"><td class="mdescLeft"> </td><td class="mdescRight">Access the replicon the sequence belongs to. <a href="classCGC__Sequence.html#a1a222e4de7452cc6e3616bf96f268bde">More...</a><br /></td></tr>
|
||
<tr class="separator:a1a222e4de7452cc6e3616bf96f268bde"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:aea29dd1fff1839f6080d1d660b773b4e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#aea29dd1fff1839f6080d1d660b773b4e">GetParent</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:aea29dd1fff1839f6080d1d660b773b4e"><td class="mdescLeft"> </td><td class="mdescRight">Access the parent sequence of this sequence. <a href="classCGC__Sequence.html#aea29dd1fff1839f6080d1d660b773b4e">More...</a><br /></td></tr>
|
||
<tr class="separator:aea29dd1fff1839f6080d1d660b773b4e"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:acd4fe32c6de2b0e8dedcd8bf8ef63824"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#acd4fe32c6de2b0e8dedcd8bf8ef63824">GetTopLevelParent</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:acd4fe32c6de2b0e8dedcd8bf8ef63824"><td class="mdescLeft"> </td><td class="mdescRight">Access the top-most parent sequence of this sequence. <a href="classCGC__Sequence.html#acd4fe32c6de2b0e8dedcd8bf8ef63824">More...</a><br /></td></tr>
|
||
<tr class="separator:acd4fe32c6de2b0e8dedcd8bf8ef63824"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ae2e7fa324ad80b518a2d74e7abcde822"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaed70b56b4ea98388e3d41c9ab02ba4b4">CGC_TaggedSequences::TState</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#ae2e7fa324ad80b518a2d74e7abcde822">GetParentRelation</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ae2e7fa324ad80b518a2d74e7abcde822"><td class="mdescLeft"> </td><td class="mdescRight">Access the relationship to the parent. <a href="classCGC__Sequence.html#ae2e7fa324ad80b518a2d74e7abcde822">More...</a><br /></td></tr>
|
||
<tr class="separator:ae2e7fa324ad80b518a2d74e7abcde822"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a3ea9812a06a31e39a4afb37e6fc67bb1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCSeq__id.html">CSeq_id</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a3ea9812a06a31e39a4afb37e6fc67bb1">GetSynonymSeq_id</a> (<a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga0d259c9903edd6672d64c7b5a1974714">CGC_TypedSeqId::E_Choice</a> <a class="el" href="structtype.html">type</a>, <a class="el" href="classCGC__SeqIdAlias.html#a712014b0ef42d6e76960aec370cf0a8e">CGC_SeqIdAlias::E_AliasTypes</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="separator:a3ea9812a06a31e39a4afb37e6fc67bb1"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a25bed09b4f435525d77f87cd874f1367"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCSeq__id.html">CSeq_id</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a25bed09b4f435525d77f87cd874f1367">GetSubmitterName</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:a25bed09b4f435525d77f87cd874f1367"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a6e5c88f0fc80f9d5961d86af401283ac"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a6e5c88f0fc80f9d5961d86af401283ac">HasRole</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> Role) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:a6e5c88f0fc80f9d5961d86af401283ac"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a44ebe0cc38e3a56cebfa439532c937b8"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a44ebe0cc38e3a56cebfa439532c937b8">GetChildren</a> (<a class="el" href="classCGC__Sequence.html#a0d82fcbe388f97270be93e2c4b799dd2">TSequenceList</a> &children, <a class="el" href="classCGC__Sequence.html#aafb4f2050e6254a6eda2f5cafc8c0770">EChildrenSubset</a> subset=<a class="el" href="classCGC__Sequence.html#aafb4f2050e6254a6eda2f5cafc8c0770a4790f6fb0a5c046fc7f1920eec759e5b">eAll</a>, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaed70b56b4ea98388e3d41c9ab02ba4b4">CGC_TaggedSequences::TState</a> <a class="el" href="classstate.html">state</a>=0, <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> level=0) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:a44ebe0cc38e3a56cebfa439532c937b8"><td class="mdescLeft"> </td><td class="mdescRight">Get sub-sequences. <a href="classCGC__Sequence.html#a44ebe0cc38e3a56cebfa439532c937b8">More...</a><br /></td></tr>
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<tr class="separator:a44ebe0cc38e3a56cebfa439532c937b8"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a1c455648c0b3b23e2e2b442cd46bb54d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a1c455648c0b3b23e2e2b442cd46bb54d">GetChrName</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="memdesc:a1c455648c0b3b23e2e2b442cd46bb54d"><td class="mdescLeft"> </td><td class="mdescRight">Get name of chromosome that this sequence belongs to, if any. <a href="classCGC__Sequence.html#a1c455648c0b3b23e2e2b442cd46bb54d">More...</a><br /></td></tr>
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<tr class="separator:a1c455648c0b3b23e2e2b442cd46bb54d"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:aa2e987a62eb618ac135c6a2758008356"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#aa2e987a62eb618ac135c6a2758008356">GetUnitDisplayName</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:aa2e987a62eb618ac135c6a2758008356"><td class="mdescLeft"> </td><td class="mdescRight">Get full display name of assmebly unit. <a href="classCGC__Sequence.html#aa2e987a62eb618ac135c6a2758008356">More...</a><br /></td></tr>
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<tr class="separator:aa2e987a62eb618ac135c6a2758008356"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ac1305cb10786aee328e36acffbc957a4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#ac1305cb10786aee328e36acffbc957a4">IsOrganelle</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ac1305cb10786aee328e36acffbc957a4"><td class="mdescLeft"> </td><td class="mdescRight">Is this aN organelle sequence? <a href="classCGC__Sequence.html#ac1305cb10786aee328e36acffbc957a4">More...</a><br /></td></tr>
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<tr class="separator:ac1305cb10786aee328e36acffbc957a4"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a26203e15d1ab3c3537b6fad2e5f707f2"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a26203e15d1ab3c3537b6fad2e5f707f2">CanGetLength</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:a26203e15d1ab3c3537b6fad2e5f707f2"><td class="mdescLeft"> </td><td class="mdescRight">Is the length statistic available? <a href="classCGC__Sequence.html#a26203e15d1ab3c3537b6fad2e5f707f2">More...</a><br /></td></tr>
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<tr class="separator:a26203e15d1ab3c3537b6fad2e5f707f2"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a4b1e29c1f89f4c109b9cb6b23ba0890c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__AppFramework.html#ga7576cbabf7b457b1a66d0a1d985fe176">TSeqPos</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a4b1e29c1f89f4c109b9cb6b23ba0890c">GetLength</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
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<tr class="memdesc:a4b1e29c1f89f4c109b9cb6b23ba0890c"><td class="mdescLeft"> </td><td class="mdescRight">return the length of this sequence. <a href="classCGC__Sequence.html#a4b1e29c1f89f4c109b9cb6b23ba0890c">More...</a><br /></td></tr>
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<tr class="separator:a4b1e29c1f89f4c109b9cb6b23ba0890c"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_methods_classCGC__Sequence__Base"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCGC__Sequence__Base')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCGC__Sequence__Base.html">CGC_Sequence_Base</a></td></tr>
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<tr class="memitem:ga213e63d3f46a1166deb9138ed6fcbff0 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga213e63d3f46a1166deb9138ed6fcbff0">CGC_Sequence_Base</a> (void)</td></tr>
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<tr class="memitem:gad44216b5267371e95d3ad2e61e18f37a inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gad44216b5267371e95d3ad2e61e18f37a">~CGC_Sequence_Base</a> (void)</td></tr>
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<tr class="separator:gad44216b5267371e95d3ad2e61e18f37a inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga7fb4d2c21e74de1e1257c55cf87dff13 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga7fb4d2c21e74de1e1257c55cf87dff13">DECLARE_INTERNAL_TYPE_INFO</a> ()</td></tr>
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<tr class="separator:ga7fb4d2c21e74de1e1257c55cf87dff13 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gadc0de5d8e4f96d0d82004709bfd85d73 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gadc0de5d8e4f96d0d82004709bfd85d73">IsSetSeq_id</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gadc0de5d8e4f96d0d82004709bfd85d73 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">identifiers are: Local / gpipe-satellite / genbank / refseq local is merely local name (or maybe with WGS accession??) others are accession/ver/gi <a href="group__dataspec__NCBI__GenomeCollection.html#gadc0de5d8e4f96d0d82004709bfd85d73">More...</a><br /></td></tr>
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<tr class="separator:gadc0de5d8e4f96d0d82004709bfd85d73 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga04202b9ff3ed53d881a89bd02b50f2f0 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga04202b9ff3ed53d881a89bd02b50f2f0">CanGetSeq_id</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga04202b9ff3ed53d881a89bd02b50f2f0 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetSeq_id method. <a href="group__dataspec__NCBI__GenomeCollection.html#ga04202b9ff3ed53d881a89bd02b50f2f0">More...</a><br /></td></tr>
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<tr class="separator:ga04202b9ff3ed53d881a89bd02b50f2f0 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaa7a9484a1f347d75f6dd8f455b02e73d inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaa7a9484a1f347d75f6dd8f455b02e73d">ResetSeq_id</a> (void)</td></tr>
|
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<tr class="memdesc:gaa7a9484a1f347d75f6dd8f455b02e73d inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset Seq_id data member. <a href="group__dataspec__NCBI__GenomeCollection.html#gaa7a9484a1f347d75f6dd8f455b02e73d">More...</a><br /></td></tr>
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<tr class="separator:gaa7a9484a1f347d75f6dd8f455b02e73d inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaffe42161c8d2d9f2604b647e32c7e662 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga6620c36f7cd7a482838ac7827003f871">TSeq_id</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaffe42161c8d2d9f2604b647e32c7e662">GetSeq_id</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaffe42161c8d2d9f2604b647e32c7e662 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the Seq_id member data. <a href="group__dataspec__NCBI__GenomeCollection.html#gaffe42161c8d2d9f2604b647e32c7e662">More...</a><br /></td></tr>
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<tr class="separator:gaffe42161c8d2d9f2604b647e32c7e662 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga4b4deddaf677a78368cc36e1a55f01ba inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga4b4deddaf677a78368cc36e1a55f01ba">SetSeq_id</a> (<a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga6620c36f7cd7a482838ac7827003f871">TSeq_id</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
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||
<tr class="memdesc:ga4b4deddaf677a78368cc36e1a55f01ba inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Seq_id data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga4b4deddaf677a78368cc36e1a55f01ba">More...</a><br /></td></tr>
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<tr class="separator:ga4b4deddaf677a78368cc36e1a55f01ba inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga55563d7e29747bb9f651b56535af27c9 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga6620c36f7cd7a482838ac7827003f871">TSeq_id</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga55563d7e29747bb9f651b56535af27c9">SetSeq_id</a> (void)</td></tr>
|
||
<tr class="memdesc:ga55563d7e29747bb9f651b56535af27c9 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Seq_id data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga55563d7e29747bb9f651b56535af27c9">More...</a><br /></td></tr>
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<tr class="separator:ga55563d7e29747bb9f651b56535af27c9 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaecea9c8c1782a4f96770da2ee578b540 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaecea9c8c1782a4f96770da2ee578b540">IsSetSeq_id_synonyms</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaecea9c8c1782a4f96770da2ee578b540 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Other known identifiers: Local / gpipe-satellite / genbank / refseq <a class="el" href="structCheck.html">Check</a> if a value has been assigned to Seq_id_synonyms data member. <a href="group__dataspec__NCBI__GenomeCollection.html#gaecea9c8c1782a4f96770da2ee578b540">More...</a><br /></td></tr>
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<tr class="separator:gaecea9c8c1782a4f96770da2ee578b540 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga30d7e2c151dfb02c8cc5d0f08e788020 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga30d7e2c151dfb02c8cc5d0f08e788020">CanGetSeq_id_synonyms</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga30d7e2c151dfb02c8cc5d0f08e788020 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetSeq_id_synonyms method. <a href="group__dataspec__NCBI__GenomeCollection.html#ga30d7e2c151dfb02c8cc5d0f08e788020">More...</a><br /></td></tr>
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<tr class="separator:ga30d7e2c151dfb02c8cc5d0f08e788020 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaae404ba436b6eb4fe52b05da7b7759ee inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaae404ba436b6eb4fe52b05da7b7759ee">ResetSeq_id_synonyms</a> (void)</td></tr>
|
||
<tr class="memdesc:gaae404ba436b6eb4fe52b05da7b7759ee inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset Seq_id_synonyms data member. <a href="group__dataspec__NCBI__GenomeCollection.html#gaae404ba436b6eb4fe52b05da7b7759ee">More...</a><br /></td></tr>
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<tr class="separator:gaae404ba436b6eb4fe52b05da7b7759ee inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga8d8f12b1aaba50b0265f19b387f67c20 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga5452ad18860da8c421925d7ec1dd0aaa">TSeq_id_synonyms</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga8d8f12b1aaba50b0265f19b387f67c20">GetSeq_id_synonyms</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="memdesc:ga8d8f12b1aaba50b0265f19b387f67c20 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the Seq_id_synonyms member data. <a href="group__dataspec__NCBI__GenomeCollection.html#ga8d8f12b1aaba50b0265f19b387f67c20">More...</a><br /></td></tr>
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<tr class="separator:ga8d8f12b1aaba50b0265f19b387f67c20 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga52cfec219471d7bb362462f4f17def93 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga5452ad18860da8c421925d7ec1dd0aaa">TSeq_id_synonyms</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga52cfec219471d7bb362462f4f17def93">SetSeq_id_synonyms</a> (void)</td></tr>
|
||
<tr class="memdesc:ga52cfec219471d7bb362462f4f17def93 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Seq_id_synonyms data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga52cfec219471d7bb362462f4f17def93">More...</a><br /></td></tr>
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<tr class="separator:ga52cfec219471d7bb362462f4f17def93 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga2427d206d1d0eb1e1c3f486f3a2664b6 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga2427d206d1d0eb1e1c3f486f3a2664b6">IsSetDescr</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga2427d206d1d0eb1e1c3f486f3a2664b6 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Various attributes assigned at this level: biosrc, comments, publications... <a href="group__dataspec__NCBI__GenomeCollection.html#ga2427d206d1d0eb1e1c3f486f3a2664b6">More...</a><br /></td></tr>
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<tr class="separator:ga2427d206d1d0eb1e1c3f486f3a2664b6 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaf3d248bf647fdf323e8670cc445cf426 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaf3d248bf647fdf323e8670cc445cf426">CanGetDescr</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaf3d248bf647fdf323e8670cc445cf426 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetDescr method. <a href="group__dataspec__NCBI__GenomeCollection.html#gaf3d248bf647fdf323e8670cc445cf426">More...</a><br /></td></tr>
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<tr class="separator:gaf3d248bf647fdf323e8670cc445cf426 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaf198d04b2435791047617458b94c6655 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaf198d04b2435791047617458b94c6655">ResetDescr</a> (void)</td></tr>
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||
<tr class="memdesc:gaf198d04b2435791047617458b94c6655 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset Descr data member. <a href="group__dataspec__NCBI__GenomeCollection.html#gaf198d04b2435791047617458b94c6655">More...</a><br /></td></tr>
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<tr class="separator:gaf198d04b2435791047617458b94c6655 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga0e0cbb8ff0ef35ad51852d24e400b966 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga89280dfbbabb3f6277f71a629cd31950">TDescr</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga0e0cbb8ff0ef35ad51852d24e400b966">GetDescr</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga0e0cbb8ff0ef35ad51852d24e400b966 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the Descr member data. <a href="group__dataspec__NCBI__GenomeCollection.html#ga0e0cbb8ff0ef35ad51852d24e400b966">More...</a><br /></td></tr>
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<tr class="separator:ga0e0cbb8ff0ef35ad51852d24e400b966 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga8d2148417f1f81eb84d1a782e67d63b1 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga8d2148417f1f81eb84d1a782e67d63b1">SetDescr</a> (<a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga89280dfbbabb3f6277f71a629cd31950">TDescr</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
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<tr class="memdesc:ga8d2148417f1f81eb84d1a782e67d63b1 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Descr data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga8d2148417f1f81eb84d1a782e67d63b1">More...</a><br /></td></tr>
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<tr class="separator:ga8d2148417f1f81eb84d1a782e67d63b1 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga50b4098244a1e8f93661cdd36a52be4d inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga89280dfbbabb3f6277f71a629cd31950">TDescr</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga50b4098244a1e8f93661cdd36a52be4d">SetDescr</a> (void)</td></tr>
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||
<tr class="memdesc:ga50b4098244a1e8f93661cdd36a52be4d inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Descr data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga50b4098244a1e8f93661cdd36a52be4d">More...</a><br /></td></tr>
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<tr class="separator:ga50b4098244a1e8f93661cdd36a52be4d inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga7c8672a590dbe80e162b06b5fb14ac86 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga7c8672a590dbe80e162b06b5fb14ac86">IsSetAnnot</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga7c8672a590dbe80e162b06b5fb14ac86 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Feature annotation; Contains Pseudo Autosomal regions on chromosomes and scaffolds in the following format: Id = <ID of PAR (ex:"PAR#1")> Desc (set of Annot-descr) Name: "pseudo autosomal region" Region (seq-loc): int (seq-interval) Id: <GI of chromosome> From: <start-position of region> To : <end-position of region> Data: locs (set of seq-loc): List of int (seq-interval): Id: GI of scaffold From/to: position on scaffold that belongs to this PAR region. <a href="group__dataspec__NCBI__GenomeCollection.html#ga7c8672a590dbe80e162b06b5fb14ac86">More...</a><br /></td></tr>
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<tr class="separator:ga7c8672a590dbe80e162b06b5fb14ac86 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga2d1d2bd29b538bf05694226aa6eaea15 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga2d1d2bd29b538bf05694226aa6eaea15">CanGetAnnot</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga2d1d2bd29b538bf05694226aa6eaea15 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetAnnot method. <a href="group__dataspec__NCBI__GenomeCollection.html#ga2d1d2bd29b538bf05694226aa6eaea15">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2d1d2bd29b538bf05694226aa6eaea15 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga82319aabe45bbfc2ca1a6d45be4469a4 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga82319aabe45bbfc2ca1a6d45be4469a4">ResetAnnot</a> (void)</td></tr>
|
||
<tr class="memdesc:ga82319aabe45bbfc2ca1a6d45be4469a4 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset Annot data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga82319aabe45bbfc2ca1a6d45be4469a4">More...</a><br /></td></tr>
|
||
<tr class="separator:ga82319aabe45bbfc2ca1a6d45be4469a4 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga9038a612251e5a1a0116526c2b624377 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga2f9e03e126834257e6173f0321c69730">TAnnot</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga9038a612251e5a1a0116526c2b624377">GetAnnot</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="memdesc:ga9038a612251e5a1a0116526c2b624377 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the Annot member data. <a href="group__dataspec__NCBI__GenomeCollection.html#ga9038a612251e5a1a0116526c2b624377">More...</a><br /></td></tr>
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||
<tr class="separator:ga9038a612251e5a1a0116526c2b624377 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga63ec2171e14302a4b2e013c8703f7fcc inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga2f9e03e126834257e6173f0321c69730">TAnnot</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga63ec2171e14302a4b2e013c8703f7fcc">SetAnnot</a> (void)</td></tr>
|
||
<tr class="memdesc:ga63ec2171e14302a4b2e013c8703f7fcc inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Annot data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga63ec2171e14302a4b2e013c8703f7fcc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga63ec2171e14302a4b2e013c8703f7fcc inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga9df4a4da14e741184a3270e991a5fd8e inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga9df4a4da14e741184a3270e991a5fd8e">IsSetSequences</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga9df4a4da14e741184a3270e991a5fd8e inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">placed: populated both on chromosome and scaffold levels unlocalized: populated on chromosome level <a class="el" href="structCheck.html">Check</a> if a value has been assigned to Sequences data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga9df4a4da14e741184a3270e991a5fd8e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9df4a4da14e741184a3270e991a5fd8e inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga01e4319ffb1adc720662e2f88fa297c8 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga01e4319ffb1adc720662e2f88fa297c8">CanGetSequences</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="memdesc:ga01e4319ffb1adc720662e2f88fa297c8 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetSequences method. <a href="group__dataspec__NCBI__GenomeCollection.html#ga01e4319ffb1adc720662e2f88fa297c8">More...</a><br /></td></tr>
|
||
<tr class="separator:ga01e4319ffb1adc720662e2f88fa297c8 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga05d8250b1894ea62146385e056ce8d61 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga05d8250b1894ea62146385e056ce8d61">ResetSequences</a> (void)</td></tr>
|
||
<tr class="memdesc:ga05d8250b1894ea62146385e056ce8d61 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset Sequences data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga05d8250b1894ea62146385e056ce8d61">More...</a><br /></td></tr>
|
||
<tr class="separator:ga05d8250b1894ea62146385e056ce8d61 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gac0226e2a0ef5d4c3fc94de91f4426bdb inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga944f914dfb372dba2c053f539d683666">TSequences</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gac0226e2a0ef5d4c3fc94de91f4426bdb">GetSequences</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gac0226e2a0ef5d4c3fc94de91f4426bdb inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the Sequences member data. <a href="group__dataspec__NCBI__GenomeCollection.html#gac0226e2a0ef5d4c3fc94de91f4426bdb">More...</a><br /></td></tr>
|
||
<tr class="separator:gac0226e2a0ef5d4c3fc94de91f4426bdb inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga733b0bbd9d5f65c8c6e12453a29e0f87 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga944f914dfb372dba2c053f539d683666">TSequences</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga733b0bbd9d5f65c8c6e12453a29e0f87">SetSequences</a> (void)</td></tr>
|
||
<tr class="memdesc:ga733b0bbd9d5f65c8c6e12453a29e0f87 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Sequences data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga733b0bbd9d5f65c8c6e12453a29e0f87">More...</a><br /></td></tr>
|
||
<tr class="separator:ga733b0bbd9d5f65c8c6e12453a29e0f87 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga84c572087492d4f42951a6adbcadb2d2 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga84c572087492d4f42951a6adbcadb2d2">IsSetStructure</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga84c572087492d4f42951a6adbcadb2d2 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">locations of ordered scaffolds/components <a class="el" href="structCheck.html">Check</a> if a value has been assigned to Structure data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga84c572087492d4f42951a6adbcadb2d2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga84c572087492d4f42951a6adbcadb2d2 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gacc568f5f2364262f5670344246e96ff7 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gacc568f5f2364262f5670344246e96ff7">CanGetStructure</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gacc568f5f2364262f5670344246e96ff7 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetStructure method. <a href="group__dataspec__NCBI__GenomeCollection.html#gacc568f5f2364262f5670344246e96ff7">More...</a><br /></td></tr>
|
||
<tr class="separator:gacc568f5f2364262f5670344246e96ff7 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga33a93fb39f8ca8eebfb755e161396a9e inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga33a93fb39f8ca8eebfb755e161396a9e">ResetStructure</a> (void)</td></tr>
|
||
<tr class="memdesc:ga33a93fb39f8ca8eebfb755e161396a9e inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset Structure data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga33a93fb39f8ca8eebfb755e161396a9e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga33a93fb39f8ca8eebfb755e161396a9e inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga299eb6776317468fd63c88bb01a774ed inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga93c5799e5abe14063355e70656ee4e71">TStructure</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga299eb6776317468fd63c88bb01a774ed">GetStructure</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga299eb6776317468fd63c88bb01a774ed inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the Structure member data. <a href="group__dataspec__NCBI__GenomeCollection.html#ga299eb6776317468fd63c88bb01a774ed">More...</a><br /></td></tr>
|
||
<tr class="separator:ga299eb6776317468fd63c88bb01a774ed inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaf13352a7bf1d52a79eac73ee057fbe60 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaf13352a7bf1d52a79eac73ee057fbe60">SetStructure</a> (<a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga93c5799e5abe14063355e70656ee4e71">TStructure</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="memdesc:gaf13352a7bf1d52a79eac73ee057fbe60 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Structure data member. <a href="group__dataspec__NCBI__GenomeCollection.html#gaf13352a7bf1d52a79eac73ee057fbe60">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf13352a7bf1d52a79eac73ee057fbe60 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga6b10faeddf03315fcb3c15a679366734 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga93c5799e5abe14063355e70656ee4e71">TStructure</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga6b10faeddf03315fcb3c15a679366734">SetStructure</a> (void)</td></tr>
|
||
<tr class="memdesc:ga6b10faeddf03315fcb3c15a679366734 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Structure data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga6b10faeddf03315fcb3c15a679366734">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6b10faeddf03315fcb3c15a679366734 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gace98524f2ea874384cb3434f703afc02 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gace98524f2ea874384cb3434f703afc02">IsSetStats</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gace98524f2ea874384cb3434f703afc02 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">statistics <a class="el" href="structCheck.html">Check</a> if a value has been assigned to Stats data member. <a href="group__dataspec__NCBI__GenomeCollection.html#gace98524f2ea874384cb3434f703afc02">More...</a><br /></td></tr>
|
||
<tr class="separator:gace98524f2ea874384cb3434f703afc02 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga45c146bd79d01828f7ea7cc80559cb53 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga45c146bd79d01828f7ea7cc80559cb53">CanGetStats</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga45c146bd79d01828f7ea7cc80559cb53 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetStats method. <a href="group__dataspec__NCBI__GenomeCollection.html#ga45c146bd79d01828f7ea7cc80559cb53">More...</a><br /></td></tr>
|
||
<tr class="separator:ga45c146bd79d01828f7ea7cc80559cb53 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga0979b3c839b4b84a0c20bf6a7d3c857d inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga0979b3c839b4b84a0c20bf6a7d3c857d">ResetStats</a> (void)</td></tr>
|
||
<tr class="memdesc:ga0979b3c839b4b84a0c20bf6a7d3c857d inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset Stats data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga0979b3c839b4b84a0c20bf6a7d3c857d">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0979b3c839b4b84a0c20bf6a7d3c857d inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga0db242d75319b0021196d5267f7132bc inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga54ae83e5a9c25ea80cb3ec634a2f156a">TStats</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga0db242d75319b0021196d5267f7132bc">GetStats</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga0db242d75319b0021196d5267f7132bc inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the Stats member data. <a href="group__dataspec__NCBI__GenomeCollection.html#ga0db242d75319b0021196d5267f7132bc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0db242d75319b0021196d5267f7132bc inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga33b3d3197f5176380dbf405e4c3c4959 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga33b3d3197f5176380dbf405e4c3c4959">SetStats</a> (<a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga54ae83e5a9c25ea80cb3ec634a2f156a">TStats</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="memdesc:ga33b3d3197f5176380dbf405e4c3c4959 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Stats data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga33b3d3197f5176380dbf405e4c3c4959">More...</a><br /></td></tr>
|
||
<tr class="separator:ga33b3d3197f5176380dbf405e4c3c4959 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaf1c6aaafeb9e776c7f3d908dd05983ba inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga54ae83e5a9c25ea80cb3ec634a2f156a">TStats</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaf1c6aaafeb9e776c7f3d908dd05983ba">SetStats</a> (void)</td></tr>
|
||
<tr class="memdesc:gaf1c6aaafeb9e776c7f3d908dd05983ba inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Stats data member. <a href="group__dataspec__NCBI__GenomeCollection.html#gaf1c6aaafeb9e776c7f3d908dd05983ba">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf1c6aaafeb9e776c7f3d908dd05983ba inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga65df279e8e8b1bcc191e2ab3b57fbcb0 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga65df279e8e8b1bcc191e2ab3b57fbcb0">IsSetPatch_type</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="memdesc:ga65df279e8e8b1bcc191e2ab3b57fbcb0 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if a value has been assigned to Patch_type data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga65df279e8e8b1bcc191e2ab3b57fbcb0">More...</a><br /></td></tr>
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<tr class="separator:ga65df279e8e8b1bcc191e2ab3b57fbcb0 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gabba0ac66afb1164857a47bba476061e5 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gabba0ac66afb1164857a47bba476061e5">CanGetPatch_type</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gabba0ac66afb1164857a47bba476061e5 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetPatch_type method. <a href="group__dataspec__NCBI__GenomeCollection.html#gabba0ac66afb1164857a47bba476061e5">More...</a><br /></td></tr>
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<tr class="separator:gabba0ac66afb1164857a47bba476061e5 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gac9ce9627a3aa96d16d174c7cc763678e inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gac9ce9627a3aa96d16d174c7cc763678e">ResetPatch_type</a> (void)</td></tr>
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<tr class="memdesc:gac9ce9627a3aa96d16d174c7cc763678e inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset Patch_type data member. <a href="group__dataspec__NCBI__GenomeCollection.html#gac9ce9627a3aa96d16d174c7cc763678e">More...</a><br /></td></tr>
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||
<tr class="separator:gac9ce9627a3aa96d16d174c7cc763678e inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaeee57044b3bd5a717150dc136d3b6b5e inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga5e2d1bb7b4cd395c8215a170c9b2735b">TPatch_type</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaeee57044b3bd5a717150dc136d3b6b5e">GetPatch_type</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaeee57044b3bd5a717150dc136d3b6b5e inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the Patch_type member data. <a href="group__dataspec__NCBI__GenomeCollection.html#gaeee57044b3bd5a717150dc136d3b6b5e">More...</a><br /></td></tr>
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||
<tr class="separator:gaeee57044b3bd5a717150dc136d3b6b5e inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga69172062c0f3e7aa74c827c7b9ad7fc8 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga69172062c0f3e7aa74c827c7b9ad7fc8">SetPatch_type</a> (<a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga5e2d1bb7b4cd395c8215a170c9b2735b">TPatch_type</a> <a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
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||
<tr class="memdesc:ga69172062c0f3e7aa74c827c7b9ad7fc8 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Patch_type data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga69172062c0f3e7aa74c827c7b9ad7fc8">More...</a><br /></td></tr>
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||
<tr class="separator:ga69172062c0f3e7aa74c827c7b9ad7fc8 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga0c25e01122d177686b1ce2531ea7eb38 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga5e2d1bb7b4cd395c8215a170c9b2735b">TPatch_type</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga0c25e01122d177686b1ce2531ea7eb38">SetPatch_type</a> (void)</td></tr>
|
||
<tr class="memdesc:ga0c25e01122d177686b1ce2531ea7eb38 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Patch_type data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga0c25e01122d177686b1ce2531ea7eb38">More...</a><br /></td></tr>
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<tr class="separator:ga0c25e01122d177686b1ce2531ea7eb38 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gad711c3f553aa8f6b8574085b4559a2bf inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gad711c3f553aa8f6b8574085b4559a2bf">IsSetRoles</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="memdesc:gad711c3f553aa8f6b8574085b4559a2bf inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">sequence-role: what role(s) does this sequence have in the assembly <a class="el" href="structCheck.html">Check</a> if a value has been assigned to Roles data member. <a href="group__dataspec__NCBI__GenomeCollection.html#gad711c3f553aa8f6b8574085b4559a2bf">More...</a><br /></td></tr>
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||
<tr class="separator:gad711c3f553aa8f6b8574085b4559a2bf inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga92a1a537f48aa087171127eb4710be3b inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga92a1a537f48aa087171127eb4710be3b">CanGetRoles</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="memdesc:ga92a1a537f48aa087171127eb4710be3b inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetRoles method. <a href="group__dataspec__NCBI__GenomeCollection.html#ga92a1a537f48aa087171127eb4710be3b">More...</a><br /></td></tr>
|
||
<tr class="separator:ga92a1a537f48aa087171127eb4710be3b inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga553f01a049fd9157337b7eb9888b81d3 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga553f01a049fd9157337b7eb9888b81d3">ResetRoles</a> (void)</td></tr>
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||
<tr class="memdesc:ga553f01a049fd9157337b7eb9888b81d3 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset Roles data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga553f01a049fd9157337b7eb9888b81d3">More...</a><br /></td></tr>
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||
<tr class="separator:ga553f01a049fd9157337b7eb9888b81d3 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga2437489bdfa93f40bb4f1e589e437514 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaff609a946f5ceb168e3bb14192f4c1bf">TRoles</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga2437489bdfa93f40bb4f1e589e437514">GetRoles</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="memdesc:ga2437489bdfa93f40bb4f1e589e437514 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Get the Roles member data. <a href="group__dataspec__NCBI__GenomeCollection.html#ga2437489bdfa93f40bb4f1e589e437514">More...</a><br /></td></tr>
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||
<tr class="separator:ga2437489bdfa93f40bb4f1e589e437514 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga62fbeb693836bf2e9b10133d3b14e21b inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaff609a946f5ceb168e3bb14192f4c1bf">TRoles</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga62fbeb693836bf2e9b10133d3b14e21b">SetRoles</a> (void)</td></tr>
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||
<tr class="memdesc:ga62fbeb693836bf2e9b10133d3b14e21b inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Assign a value to Roles data member. <a href="group__dataspec__NCBI__GenomeCollection.html#ga62fbeb693836bf2e9b10133d3b14e21b">More...</a><br /></td></tr>
|
||
<tr class="separator:ga62fbeb693836bf2e9b10133d3b14e21b inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga2c150eec4f6fb9cb01189f9184b56cc1 inherit pub_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga2c150eec4f6fb9cb01189f9184b56cc1">Reset</a> (void)</td></tr>
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||
<tr class="memdesc:ga2c150eec4f6fb9cb01189f9184b56cc1 inherit pub_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Reset the whole object. <a href="group__dataspec__NCBI__GenomeCollection.html#ga2c150eec4f6fb9cb01189f9184b56cc1">More...</a><br /></td></tr>
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<tr class="separator:ga2c150eec4f6fb9cb01189f9184b56cc1 inherit pub_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_methods_classCSerialObject"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCSerialObject')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCSerialObject.html">CSerialObject</a></td></tr>
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<tr class="memitem:ga8575b1015c4a4f3336b6e1c0a4324b71 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga8575b1015c4a4f3336b6e1c0a4324b71">CSerialObject</a> (void)</td></tr>
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<tr class="separator:ga8575b1015c4a4f3336b6e1c0a4324b71 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaf278b96157abad20b5d944fb83d32fb1 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gaf278b96157abad20b5d944fb83d32fb1">~CSerialObject</a> (void)</td></tr>
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<tr class="separator:gaf278b96157abad20b5d944fb83d32fb1 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gacb5d8a2e6878e58aeaeaf342081f0b7f inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCTypeInfo.html">CTypeInfo</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gacb5d8a2e6878e58aeaeaf342081f0b7f">GetThisTypeInfo</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> =0</td></tr>
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<tr class="separator:gacb5d8a2e6878e58aeaeaf342081f0b7f inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga6c7f903717f7a272091acf5124cfd903 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga6c7f903717f7a272091acf5124cfd903">Assign</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSerialObject.html">CSerialObject</a> &source, <a class="el" href="group__GenClassSupport.html#ga059327d78b8d9e780d720f141674f241">ESerialRecursionMode</a> how=<a class="el" href="group__GenClassSupport.html#gga059327d78b8d9e780d720f141674f241abe759672df31c77b76afeea2cd4c0db7">eRecursive</a>)</td></tr>
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<tr class="memdesc:ga6c7f903717f7a272091acf5124cfd903 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight">Set object to copy of another one. <a href="group__GenClassSupport.html#ga6c7f903717f7a272091acf5124cfd903">More...</a><br /></td></tr>
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<tr class="separator:ga6c7f903717f7a272091acf5124cfd903 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gae694abd95a4753598c398540f3467d99 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gae694abd95a4753598c398540f3467d99">Equals</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSerialObject.html">CSerialObject</a> &object, <a class="el" href="group__GenClassSupport.html#ga059327d78b8d9e780d720f141674f241">ESerialRecursionMode</a> how=<a class="el" href="group__GenClassSupport.html#gga059327d78b8d9e780d720f141674f241abe759672df31c77b76afeea2cd4c0db7">eRecursive</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gae694abd95a4753598c398540f3467d99 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if both objects contain the same values. <a href="group__GenClassSupport.html#gae694abd95a4753598c398540f3467d99">More...</a><br /></td></tr>
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<tr class="separator:gae694abd95a4753598c398540f3467d99 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga0daf4906b8f2e6382118c4a018491761 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga0daf4906b8f2e6382118c4a018491761">DebugDump</a> (<a class="el" href="classCDebugDumpContext.html">CDebugDumpContext</a> ddc, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="memdesc:ga0daf4906b8f2e6382118c4a018491761 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight">Define method for dumping debug information. <a href="group__GenClassSupport.html#ga0daf4906b8f2e6382118c4a018491761">More...</a><br /></td></tr>
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<tr class="separator:ga0daf4906b8f2e6382118c4a018491761 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga7382b4cd30306d9444f85abd912ff61e inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga7382b4cd30306d9444f85abd912ff61e">ThrowUnassigned</a> (<a class="el" href="group__GenClassSupport.html#ga4045c609bd35431331d0055309404111">TMemberIndex</a> index) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ga7382b4cd30306d9444f85abd912ff61e inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gab5506012856f3627d88368a24e1eb254 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gab5506012856f3627d88368a24e1eb254">ThrowUnassigned</a> (<a class="el" href="group__GenClassSupport.html#ga4045c609bd35431331d0055309404111">TMemberIndex</a> index, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *<a class="el" href="dbapi__sample__base_8hpp.html#a8334353b550f5c3b6d2ea57d716ab2e2">file_name</a>, <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> file_line) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:gab5506012856f3627d88368a24e1eb254 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga937551d0a9c61c7ff537ac19ec37904d inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga937551d0a9c61c7ff537ac19ec37904d">HasNamespaceName</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga937551d0a9c61c7ff537ac19ec37904d inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object data type has namespace name. <a href="group__GenClassSupport.html#ga937551d0a9c61c7ff537ac19ec37904d">More...</a><br /></td></tr>
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||
<tr class="separator:ga937551d0a9c61c7ff537ac19ec37904d inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga901688404844d3c9be43320e1d51c485 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga901688404844d3c9be43320e1d51c485">GetNamespaceName</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga901688404844d3c9be43320e1d51c485 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight">Get namespace name. <a href="group__GenClassSupport.html#ga901688404844d3c9be43320e1d51c485">More...</a><br /></td></tr>
|
||
<tr class="separator:ga901688404844d3c9be43320e1d51c485 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gacfc7e87713da36496323f5477db80219 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gacfc7e87713da36496323f5477db80219">HasNamespacePrefix</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gacfc7e87713da36496323f5477db80219 inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if data type has namespace prefix. <a href="group__GenClassSupport.html#gacfc7e87713da36496323f5477db80219">More...</a><br /></td></tr>
|
||
<tr class="separator:gacfc7e87713da36496323f5477db80219 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gae8fa62abf96f3ed3cec903dce6a6a33a inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gae8fa62abf96f3ed3cec903dce6a6a33a">GetNamespacePrefix</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gae8fa62abf96f3ed3cec903dce6a6a33a inherit pub_methods_classCSerialObject"><td class="mdescLeft"> </td><td class="mdescRight">Get namespace prefix. <a href="group__GenClassSupport.html#gae8fa62abf96f3ed3cec903dce6a6a33a">More...</a><br /></td></tr>
|
||
<tr class="separator:gae8fa62abf96f3ed3cec903dce6a6a33a inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pub_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCObject')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
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||
<tr class="memitem:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">CObject</a> (void)</td></tr>
|
||
<tr class="memdesc:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">More...</a><br /></td></tr>
|
||
<tr class="separator:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">CObject</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src)</td></tr>
|
||
<tr class="memdesc:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">More...</a><br /></td></tr>
|
||
<tr class="separator:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">~CObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCObject.html">CObject</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src) <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">More...</a><br /></td></tr>
|
||
<tr class="separator:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">CanBeDeleted</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object can be deleted. <a href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">More...</a><br /></td></tr>
|
||
<tr class="separator:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">IsAllocatedInPool</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is allocated in memory pool (not system heap) <a href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">Referenced</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced. <a href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">ReferencedOnlyOnce</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced only once. <a href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">More...</a><br /></td></tr>
|
||
<tr class="separator:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">AddReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Add reference to object. <a href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">RemoveReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference to object. <a href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">More...</a><br /></td></tr>
|
||
<tr class="separator:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">ReleaseReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference without deleting object. <a href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">DoNotDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as not allocated in heap – do not delete this object. <a href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">More...</a><br /></td></tr>
|
||
<tr class="separator:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">DoDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as allocated in heap – object can be deleted. <a href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator for memory allocation. <a href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">operator new[]</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new[] operator for 'array' memory allocation. <a href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">More...</a><br /></td></tr>
|
||
<tr class="separator:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">operator delete</a> (void *ptr)</td></tr>
|
||
<tr class="memdesc:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator for memory deallocation. <a href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">More...</a><br /></td></tr>
|
||
<tr class="separator:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">operator delete[]</a> (void *ptr)</td></tr>
|
||
<tr class="memdesc:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete[] operator for memory deallocation. <a href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, void *place)</td></tr>
|
||
<tr class="memdesc:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator. <a href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">More...</a><br /></td></tr>
|
||
<tr class="separator:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">operator delete</a> (void *ptr, void *place)</td></tr>
|
||
<tr class="memdesc:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">More...</a><br /></td></tr>
|
||
<tr class="separator:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
|
||
<tr class="memdesc:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator using memory pool. <a href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">More...</a><br /></td></tr>
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||
<tr class="separator:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">operator delete</a> (void *ptr, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
|
||
<tr class="memdesc:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pub_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
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||
<tr class="memitem:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ae8723856215191ef748f19ff73e8ba4e">CDebugDumpable</a> (void)</td></tr>
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<tr class="separator:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#acdeaaedfabb4cc4a64108dbb854f4b51">~CDebugDumpable</a> (void)</td></tr>
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<tr class="separator:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a4ff9ec248a38f17b7d8deb3f78318a37">DebugDumpText</a> (ostream &<a class="el" href="events__unit__test_8cpp.html#ac3c18c078fe416626b6c1dcc3e780245">out</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#aa0101dfdc0ae0cbd0cb1609c96f96229">DebugDumpFormat</a> (<a class="el" href="classCDebugDumpFormatter.html">CDebugDumpFormatter</a> &ddf, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a19047c92521e5f3ad2a14bab26a49b51">DumpToConsole</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
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||
Protected Member Functions</h2></td></tr>
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||
<tr class="memitem:a5dbbcd4cac77172282cd7e84b3f1a5d4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__AppFramework.html#ga7576cbabf7b457b1a66d0a1d985fe176">TSeqPos</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a5dbbcd4cac77172282cd7e84b3f1a5d4">x_GetLength</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:a5dbbcd4cac77172282cd7e84b3f1a5d4"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a5859114b1201a0469482e5bed4cb5512"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a5859114b1201a0469482e5bed4cb5512">x_GetChildren</a> (<a class="el" href="classCGC__Sequence.html#a0d82fcbe388f97270be93e2c4b799dd2">TSequenceList</a> &children, <a class="el" href="classCGC__Sequence.html#aafb4f2050e6254a6eda2f5cafc8c0770">EChildrenSubset</a> subset, <a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaed70b56b4ea98388e3d41c9ab02ba4b4">CGC_TaggedSequences::TState</a> <a class="el" href="classstate.html">state</a>, <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> level) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:a5859114b1201a0469482e5bed4cb5512"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pro_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classCObject')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
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||
<tr class="memitem:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">DeleteThis</a> (void)</td></tr>
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||
<tr class="memdesc:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Virtual method "deleting" this object. <a href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
|
||
Protected Attributes</h2></td></tr>
|
||
<tr class="memitem:af3a4310bbf5e065ef58ba729afacb1a3"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#af3a4310bbf5e065ef58ba729afacb1a3">m_Assembly</a></td></tr>
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<tr class="separator:af3a4310bbf5e065ef58ba729afacb1a3"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:a1d65918d78a005c52c83b24faea72206"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCGC__AssemblyUnit.html">CGC_AssemblyUnit</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a1d65918d78a005c52c83b24faea72206">m_AssemblyUnit</a></td></tr>
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<tr class="separator:a1d65918d78a005c52c83b24faea72206"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a0776b301e19a38f480a6fa2e180a3d27"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCGC__Replicon.html">CGC_Replicon</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a0776b301e19a38f480a6fa2e180a3d27">m_Replicon</a></td></tr>
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<tr class="separator:a0776b301e19a38f480a6fa2e180a3d27"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a0d7bde39d4e5336f98b1aee569c29bab"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a0d7bde39d4e5336f98b1aee569c29bab">m_ParentSequence</a></td></tr>
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<tr class="separator:a0d7bde39d4e5336f98b1aee569c29bab"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:afb0849d62a020c7d7e7de1ab6cd86f73"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaed70b56b4ea98388e3d41c9ab02ba4b4">CGC_TaggedSequences::TState</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#afb0849d62a020c7d7e7de1ab6cd86f73">m_ParentRel</a></td></tr>
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<tr class="separator:afb0849d62a020c7d7e7de1ab6cd86f73"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a3771c7052d65c98513c50301b7640241"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__AppFramework.html#ga7576cbabf7b457b1a66d0a1d985fe176">TSeqPos</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a3771c7052d65c98513c50301b7640241">m_SeqLength</a></td></tr>
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<tr class="separator:a3771c7052d65c98513c50301b7640241"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a4f2131576e3d824e56949c7697cafe09"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a4f2131576e3d824e56949c7697cafe09">m_SeqLengthRetrieved</a></td></tr>
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||
<tr class="separator:a4f2131576e3d824e56949c7697cafe09"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-types"></a>
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||
Private Types</h2></td></tr>
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||
<tr class="memitem:a4be007fc0d63749bbbcb5e6e9c8e1454"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCGC__Sequence__Base.html">CGC_Sequence_Base</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a4be007fc0d63749bbbcb5e6e9c8e1454">Tparent</a></td></tr>
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<tr class="separator:a4be007fc0d63749bbbcb5e6e9c8e1454"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
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Private Member Functions</h2></td></tr>
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||
<tr class="memitem:a5e4d55e85802cc77b31ea9f7fbd562e7"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a5e4d55e85802cc77b31ea9f7fbd562e7">CGC_Sequence</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
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<tr class="separator:a5e4d55e85802cc77b31ea9f7fbd562e7"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a3cd826101b3d1894c7b60a88a5aaafbd"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a3cd826101b3d1894c7b60a88a5aaafbd">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
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<tr class="separator:a3cd826101b3d1894c7b60a88a5aaafbd"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="friends"></a>
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Friends</h2></td></tr>
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<tr class="memitem:a74fee55b4b138a2262c7910bb79a9957"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a74fee55b4b138a2262c7910bb79a9957">CGC_Assembly</a></td></tr>
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<tr class="separator:a74fee55b4b138a2262c7910bb79a9957"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a9edda60340a687b14203e329f3250a47"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="classCGC__Sequence.html#a9edda60340a687b14203e329f3250a47">CGC_Replicon</a></td></tr>
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<tr class="separator:a9edda60340a687b14203e329f3250a47"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
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Additional Inherited Members</h2></td></tr>
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||
<tr class="inherit_header pub_static_methods_classCGC__Sequence__Base"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCGC__Sequence__Base')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCGC__Sequence__Base.html">CGC_Sequence_Base</a></td></tr>
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<tr class="memitem:ga8f01641356f2af3920213d8efc1c1b7d inherit pub_static_methods_classCGC__Sequence__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> NCBI_NS_NCBI::CEnumeratedTypeValues *<a class="el" href="group__GenClassSupport.html#gaab9bc228ca2014a5451d4a8d47bee150">ENUM_METHOD_NAME</a>() </td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga8f01641356f2af3920213d8efc1c1b7d">EPatch_type</a> (void)</td></tr>
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<tr class="memdesc:ga8f01641356f2af3920213d8efc1c1b7d inherit pub_static_methods_classCGC__Sequence__Base"><td class="mdescLeft"> </td><td class="mdescRight">Access to EPatch_type's attributes (values, names) as defined in spec. <a href="group__dataspec__NCBI__GenomeCollection.html#ga8f01641356f2af3920213d8efc1c1b7d">More...</a><br /></td></tr>
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<tr class="separator:ga8f01641356f2af3920213d8efc1c1b7d inherit pub_static_methods_classCGC__Sequence__Base"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_static_methods_classCSerialObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCSerialObject')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCSerialObject.html">CSerialObject</a></td></tr>
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<tr class="memitem:gab2a92c7a5b5900317294b85e854db07e inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gab2a92c7a5b5900317294b85e854db07e">SetVerifyDataThread</a> (<a class="el" href="group__GenClassSupport.html#ga58e0144d240fc7ad45518d4c3ba735e1">ESerialVerifyData</a> <a class="el" href="ftds14_2freetds_2dblib_2unittests_2t0002_8c.html#a80ddcf418c95fb872f5eeccb9908b4c7">verify</a>)</td></tr>
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<tr class="separator:gab2a92c7a5b5900317294b85e854db07e inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga2e3bead397d7ec0fffde866cd890267e inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga2e3bead397d7ec0fffde866cd890267e">SetVerifyDataGlobal</a> (<a class="el" href="group__GenClassSupport.html#ga58e0144d240fc7ad45518d4c3ba735e1">ESerialVerifyData</a> <a class="el" href="ftds14_2freetds_2dblib_2unittests_2t0002_8c.html#a80ddcf418c95fb872f5eeccb9908b4c7">verify</a>)</td></tr>
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<tr class="separator:ga2e3bead397d7ec0fffde866cd890267e inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gada3dbb83951d0bed9bde06c6c4ede9e2 inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gada3dbb83951d0bed9bde06c6c4ede9e2">UnassignedString</a> (void)</td></tr>
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<tr class="memitem:ga123d82fb69550b6418ad5d69e752873a inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__STL.html#ga88e22aab83a29bae20f5354e89b041e3">CStringUTF8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga123d82fb69550b6418ad5d69e752873a">UnassignedStringUTF8</a> (void)</td></tr>
|
||
<tr class="separator:ga123d82fb69550b6418ad5d69e752873a inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga1d897c6ce0f541df2487600cedd9f40a inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> char </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga1d897c6ce0f541df2487600cedd9f40a">UnassignedByte</a> (void)</td></tr>
|
||
<tr class="separator:ga1d897c6ce0f541df2487600cedd9f40a inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCObject')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">ThrowNullPointerException</a> (void)</td></tr>
|
||
<tr class="memdesc:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define method to throw null pointer exception. <a href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">More...</a><br /></td></tr>
|
||
<tr class="separator:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae042a181e665dd40945c1c1a7a6bc5d1">ThrowNullPointerException</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> type_info &<a class="el" href="structtype.html">type</a>)</td></tr>
|
||
<tr class="separator:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga4b6f1beef2a1f37c68f7f3b1aac471d8">GetAllocFillMode</a> (void)</td></tr>
|
||
<tr class="separator:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga42eceef165a83cc081837a373ab6dd67">SetAllocFillMode</a> (<a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> <a class="el" href="mdb__load_8c.html#a1ea5d0cb93f22f7d0fdf804bd68c3326">mode</a>)</td></tr>
|
||
<tr class="separator:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">SetAllocFillMode</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="memdesc:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Set mode from configuration parameter value. <a href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">More...</a><br /></td></tr>
|
||
<tr class="separator:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pub_static_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
|
||
<tr class="memitem:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ab6ba54280c562230f65733cca0560c83">EnableDebugDump</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> on)</td></tr>
|
||
<tr class="separator:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_attribs_classCSerialObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_attribs_classCSerialObject')"><img src="closed.png" alt="-"/> Static Public Attributes inherited from <a class="el" href="classCSerialObject.html">CSerialObject</a></td></tr>
|
||
<tr class="memitem:gacf732f6a9f64037d0cad32a72f7522ea inherit pub_static_attribs_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gacf732f6a9f64037d0cad32a72f7522ea">ms_UnassignedStr</a> = "<*unassigned*>"</td></tr>
|
||
<tr class="separator:gacf732f6a9f64037d0cad32a72f7522ea inherit pub_static_attribs_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga6baaf827f8d2e4f98be84d91d511a716 inherit pub_static_attribs_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char </td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga6baaf827f8d2e4f98be84d91d511a716">ms_UnassignedByte</a> = char(0xcd)</td></tr>
|
||
<tr class="separator:ga6baaf827f8d2e4f98be84d91d511a716 inherit pub_static_attribs_classCSerialObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_attribs_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_attribs_classCObject')"><img src="closed.png" alt="-"/> Static Public Attributes inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">eCounterBitsCanBeDeleted</a> = 1 << 0</td></tr>
|
||
<tr class="memdesc:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define possible object states. <a href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">eCounterBitsInPlainHeap</a> = 1 << 1</td></tr>
|
||
<tr class="memdesc:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Heap signature was found. <a href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">More...</a><br /></td></tr>
|
||
<tr class="separator:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">eCounterBitsPlaceMask</a></td></tr>
|
||
<tr class="memdesc:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mask for 'in heap' state flags. <a href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">More...</a><br /></td></tr>
|
||
<tr class="separator:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">eCounterStep</a> = 1 << 2</td></tr>
|
||
<tr class="memdesc:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Skip over the "in heap" bits. <a href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">eCounterValid</a> = <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>(1) << (sizeof(<a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>) * 8 - 2)</td></tr>
|
||
<tr class="memdesc:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Minimal value for valid objects (reference counter is zero) Must be a single bit value. <a href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">More...</a><br /></td></tr>
|
||
<tr class="separator:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">eCounterStateMask</a></td></tr>
|
||
<tr class="memdesc:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Valid object, and object in heap. <a href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">More...</a><br /></td></tr>
|
||
<tr class="separator:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table>
|
||
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
|
||
<div class="textblock">
|
||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8hpp_source.html#l00062">62</a> of file <a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a>.</p>
|
||
</div><h2 class="groupheader">Member Typedef Documentation</h2>
|
||
<a id="a4be007fc0d63749bbbcb5e6e9c8e1454"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a4be007fc0d63749bbbcb5e6e9c8e1454">◆ </a></span>Tparent</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
<tr>
|
||
<td class="mlabels-left">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">typedef <a class="el" href="classCGC__Sequence__Base.html">CGC_Sequence_Base</a> <a class="el" href="classCGC__Sequence.html#a4be007fc0d63749bbbcb5e6e9c8e1454">CGC_Sequence::Tparent</a></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8hpp_source.html#l00064">64</a> of file <a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a0d82fcbe388f97270be93e2c4b799dd2"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a0d82fcbe388f97270be93e2c4b799dd2">◆ </a></span>TSequenceList</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">typedef list< <a class="el" href="classCConstRef.html">CConstRef</a><<a class="el" href="classCGC__Sequence.html">CGC_Sequence</a>> > <a class="el" href="classCGC__Sequence.html#a0d82fcbe388f97270be93e2c4b799dd2">CGC_Sequence::TSequenceList</a></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8hpp_source.html#l00098">98</a> of file <a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<h2 class="groupheader">Member Enumeration Documentation</h2>
|
||
<a id="aafb4f2050e6254a6eda2f5cafc8c0770"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#aafb4f2050e6254a6eda2f5cafc8c0770">◆ </a></span>EChildrenSubset</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">enum <a class="el" href="classCGC__Sequence.html#aafb4f2050e6254a6eda2f5cafc8c0770">CGC_Sequence::EChildrenSubset</a></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
<table class="fieldtable">
|
||
<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="aafb4f2050e6254a6eda2f5cafc8c0770afacc32eaf20dca602ed26c780508c001"></a>eScaffold </td><td class="fielddoc"></td></tr>
|
||
<tr><td class="fieldname"><a id="aafb4f2050e6254a6eda2f5cafc8c0770a6df0babf6b019058863e8b38dece5b8e"></a>eComponent </td><td class="fielddoc"></td></tr>
|
||
<tr><td class="fieldname"><a id="aafb4f2050e6254a6eda2f5cafc8c0770a4790f6fb0a5c046fc7f1920eec759e5b"></a>eAll </td><td class="fielddoc"></td></tr>
|
||
</table>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8hpp_source.html#l00099">99</a> of file <a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
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<h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<a id="aff5f03c8a7bbfb1d7d9e9fcb550e0b44"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#aff5f03c8a7bbfb1d7d9e9fcb550e0b44">◆ </a></span>CGC_Sequence() <span class="overload">[1/2]</span></h2>
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<td class="memname">CGC_Sequence::CGC_Sequence </td>
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<td>(</td>
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<td class="paramtype">void </td>
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00056">56</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
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<a id="ac78905f368ac10dcfa39dbb21c17408c"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#ac78905f368ac10dcfa39dbb21c17408c">◆ </a></span>~CGC_Sequence()</h2>
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<td class="memname">CGC_Sequence::~CGC_Sequence </td>
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<td>(</td>
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<td class="paramtype">void </td>
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<td class="paramname"></td><td>)</td>
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<td></td>
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00069">69</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
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<a id="a5e4d55e85802cc77b31ea9f7fbd562e7"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a5e4d55e85802cc77b31ea9f7fbd562e7">◆ </a></span>CGC_Sequence() <span class="overload">[2/2]</span></h2>
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<td class="memname">CGC_Sequence::CGC_Sequence </td>
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<td>(</td>
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<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> & </td>
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<td class="paramname"><em>value</em></td><td>)</td>
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<td></td>
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<span class="mlabels"><span class="mlabel">private</span></span> </td>
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<h2 class="groupheader">Member Function Documentation</h2>
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<a id="a26203e15d1ab3c3537b6fad2e5f707f2"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a26203e15d1ab3c3537b6fad2e5f707f2">◆ </a></span>CanGetLength()</h2>
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<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CGC_Sequence::CanGetLength </td>
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<td>(</td>
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<td class="paramtype">void </td>
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<td class="paramname"></td><td>)</td>
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<td> const</td>
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<p>Is the length statistic available? </p>
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00283">283</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
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||
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||
<p class="reference">References <a class="el" href="GC__Sequence_8cpp_source.html#l00297">x_GetLength()</a>.</p>
|
||
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||
<p class="reference">Referenced by <a class="el" href="gc__assembly__parser_8cpp_source.html#l00328">CGC_Assembly_Parser::x_AddBioseq()</a>, and <a class="el" href="seq__loc__mapper_8cpp_source.html#l00740">CSeq_loc_Mapper::x_AddVirtualBioseq()</a>.</p>
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||
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||
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<a id="a265e63003e17de3aca9cfc33dfe9fac3"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a265e63003e17de3aca9cfc33dfe9fac3">◆ </a></span>GetAssemblyUnit()</h2>
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<td class="memname"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__AssemblyUnit.html">CGC_AssemblyUnit</a> > CGC_Sequence::GetAssemblyUnit </td>
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||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
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||
<td> const</td>
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||
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<p>Access the assembly unit the sequence belongs to. </p>
|
||
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||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00074">74</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
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||
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||
<p class="reference">References <a class="el" href="GC__Sequence_8hpp_source.html#l00131">m_AssemblyUnit</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="table__data__gcassembly_8cpp_source.html#l00194">CTableDataGCAssembly::GetStringValue()</a>, and <a class="el" href="GC__Sequence_8cpp_source.html#l00272">GetUnitDisplayName()</a>.</p>
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||
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||
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||
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||
<a id="a44ebe0cc38e3a56cebfa439532c937b8"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a44ebe0cc38e3a56cebfa439532c937b8">◆ </a></span>GetChildren()</h2>
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<td class="memname">void CGC_Sequence::GetChildren </td>
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||
<td>(</td>
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||
<td class="paramtype"><a class="el" href="classCGC__Sequence.html#a0d82fcbe388f97270be93e2c4b799dd2">TSequenceList</a> & </td>
|
||
<td class="paramname"><em>children</em>, </td>
|
||
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|
||
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|
||
<td class="paramkey"></td>
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||
<td></td>
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||
<td class="paramtype"><a class="el" href="classCGC__Sequence.html#aafb4f2050e6254a6eda2f5cafc8c0770">EChildrenSubset</a> </td>
|
||
<td class="paramname"><em>subset</em> = <code><a class="el" href="classCGC__Sequence.html#aafb4f2050e6254a6eda2f5cafc8c0770a4790f6fb0a5c046fc7f1920eec759e5b">eAll</a></code>, </td>
|
||
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|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
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||
<td class="paramtype"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaed70b56b4ea98388e3d41c9ab02ba4b4">CGC_TaggedSequences::TState</a> </td>
|
||
<td class="paramname"><em>state</em> = <code>0</code>, </td>
|
||
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|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td>
|
||
<td class="paramname"><em>level</em> = <code>0</code> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td> const</td>
|
||
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|
||
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||
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|
||
|
||
<p>Get sub-sequences. </p>
|
||
<dl class="params"><dt>Parameters</dt><dd>
|
||
<table class="params">
|
||
<tr><td class="paramname">subset</td><td>subset of children to get; default is all children </td></tr>
|
||
<tr><td class="paramname">stats</td><td>get only children with this state; default is all children </td></tr>
|
||
<tr><td class="paramname">lebel</td><td>get children up to this level; default is all levels </td></tr>
|
||
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|
||
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|
||
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|
||
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||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00204">204</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Sequence_8cpp_source.html#l00212">x_GetChildren()</a>.</p>
|
||
|
||
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|
||
</div>
|
||
<a id="a1c455648c0b3b23e2e2b442cd46bb54d"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a1c455648c0b3b23e2e2b442cd46bb54d">◆ </a></span>GetChrName()</h2>
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||
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||
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||
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<td class="memname"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> CGC_Sequence::GetChrName </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
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||
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||
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||
|
||
<p>Get name of chromosome that this sequence belongs to, if any. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00261">261</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Sequence_8cpp_source.html#l00084">GetReplicon()</a>, and <a class="el" href="GC__Sequence_8cpp_source.html#l00101">GetTopLevelParent()</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Sequence_8cpp_source.html#l00278">IsOrganelle()</a>.</p>
|
||
|
||
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|
||
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|
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<a id="a53e201063856d2afb72bb6879b67636d"></a>
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||
<h2 class="memtitle"><span class="permalink"><a href="#a53e201063856d2afb72bb6879b67636d">◆ </a></span>GetFullAssembly()</h2>
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<td class="memname"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Assembly.html">CGC_Assembly</a> > CGC_Sequence::GetFullAssembly </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
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|
||
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||
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|
||
|
||
<p>Access the most specific full assembly the sequence belongs to This is needed because assemblies are packaged as sets of assemblies; knowing the unit is not always enough. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00079">79</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Sequence_8hpp_source.html#l00130">m_Assembly</a>.</p>
|
||
|
||
</div>
|
||
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|
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<a id="a4b1e29c1f89f4c109b9cb6b23ba0890c"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a4b1e29c1f89f4c109b9cb6b23ba0890c">◆ </a></span>GetLength()</h2>
|
||
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||
<td class="memname"><a class="el" href="group__AppFramework.html#ga7576cbabf7b457b1a66d0a1d985fe176">TSeqPos</a> CGC_Sequence::GetLength </td>
|
||
<td>(</td>
|
||
<td class="paramtype">void </td>
|
||
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|
||
<td> const</td>
|
||
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|
||
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|
||
|
||
<p>return the length of this sequence. </p>
|
||
<p>if not available throws <a class="el" href="classCUnassignedMember.html" title="Thrown on an attempt to write unassigned data member.">CUnassignedMember</a> exception. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00288">288</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="ns__types_8hpp_source.html#l00055">eGet</a>, <a class="el" href="ncbiexpt_8hpp_source.html#l00704">NCBI_THROW</a>, <a class="el" href="token2_8c_source.html#l00020">result</a>, and <a class="el" href="GC__Sequence_8cpp_source.html#l00297">x_GetLength()</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="gc__assembly__parser_8cpp_source.html#l00328">CGC_Assembly_Parser::x_AddBioseq()</a>, and <a class="el" href="seq__loc__mapper_8cpp_source.html#l00740">CSeq_loc_Mapper::x_AddVirtualBioseq()</a>.</p>
|
||
|
||
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|
||
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|
||
<a id="aea29dd1fff1839f6080d1d660b773b4e"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#aea29dd1fff1839f6080d1d660b773b4e">◆ </a></span>GetParent()</h2>
|
||
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||
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|
||
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|
||
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|
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<td class="memname"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> > CGC_Sequence::GetParent </td>
|
||
<td>(</td>
|
||
<td class="paramtype">void </td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
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|
||
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|
||
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|
||
|
||
<p>Access the parent sequence of this sequence. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00089">89</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Sequence_8hpp_source.html#l00133">m_ParentSequence</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="table__data__gcassembly_8cpp_source.html#l00361">CTableDataGCAssembly::GetObjectValue()</a>, <a class="el" href="table__data__gcassembly_8cpp_source.html#l00194">CTableDataGCAssembly::GetStringValue()</a>, <a class="el" href="id__mapper_8cpp_source.html#l01169">CGencollIdMapper::x_CanSeqMeetSpec()</a>, and <a class="el" href="id__mapper_8cpp_source.html#l00634">CGencollIdMapper::x_FillGpipeTopRole()</a>.</p>
|
||
|
||
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|
||
<a id="ae2e7fa324ad80b518a2d74e7abcde822"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#ae2e7fa324ad80b518a2d74e7abcde822">◆ </a></span>GetParentRelation()</h2>
|
||
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||
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|
||
<div class="memproto">
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||
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|
||
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|
||
<td class="memname"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaed70b56b4ea98388e3d41c9ab02ba4b4">CGC_TaggedSequences::TState</a> CGC_Sequence::GetParentRelation </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
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|
||
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|
||
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|
||
|
||
<p>Access the relationship to the parent. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00095">95</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Sequence_8hpp_source.html#l00134">m_ParentRel</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="table__data__gcassembly_8cpp_source.html#l00194">CTableDataGCAssembly::GetStringValue()</a>, and <a class="el" href="id__mapper_8cpp_source.html#l00634">CGencollIdMapper::x_FillGpipeTopRole()</a>.</p>
|
||
|
||
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|
||
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|
||
<a id="a1a222e4de7452cc6e3616bf96f268bde"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a1a222e4de7452cc6e3616bf96f268bde">◆ </a></span>GetReplicon()</h2>
|
||
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||
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|
||
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||
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|
||
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<td class="memname"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Replicon.html">CGC_Replicon</a> > CGC_Sequence::GetReplicon </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
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|
||
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|
||
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|
||
|
||
<p>Access the replicon the sequence belongs to. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00084">84</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Sequence_8hpp_source.html#l00132">m_Replicon</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Assembly_8cpp_source.html#l00511">CGC_Assembly::CreateIndex()</a>, <a class="el" href="GC__Sequence_8cpp_source.html#l00261">GetChrName()</a>, and <a class="el" href="table__data__gcassembly_8cpp_source.html#l00194">CTableDataGCAssembly::GetStringValue()</a>.</p>
|
||
|
||
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|
||
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|
||
<a id="a25bed09b4f435525d77f87cd874f1367"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a25bed09b4f435525d77f87cd874f1367">◆ </a></span>GetSubmitterName()</h2>
|
||
|
||
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|
||
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|
||
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<td class="memname"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCSeq__id.html">CSeq_id</a> > CGC_Sequence::GetSubmitterName </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
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||
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|
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00169">169</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="corelib_2ncbistr_8hpp_source.html#l05347">NStr::EqualNocase()</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00558">CGC_Sequence_Base::GetSeq_id_synonyms()</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00546">CGC_Sequence_Base::IsSetSeq_id_synonyms()</a>, and <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="id__mapper_8cpp_source.html#l00354">CGencollIdMapper::x_Init()</a>.</p>
|
||
|
||
</div>
|
||
</div>
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<a id="a3ea9812a06a31e39a4afb37e6fc67bb1"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a3ea9812a06a31e39a4afb37e6fc67bb1">◆ </a></span>GetSynonymSeq_id()</h2>
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<div class="memitem">
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||
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||
<td class="memname"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCSeq__id.html">CSeq_id</a> > CGC_Sequence::GetSynonymSeq_id </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#ga0d259c9903edd6672d64c7b5a1974714">CGC_TypedSeqId::E_Choice</a> </td>
|
||
<td class="paramname"><em>type</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="classCGC__SeqIdAlias.html#a712014b0ef42d6e76960aec370cf0a8e">CGC_SeqIdAlias::E_AliasTypes</a> </td>
|
||
<td class="paramname"><em>alias_type</em> </td>
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||
</tr>
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<tr>
|
||
<td></td>
|
||
<td>)</td>
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<td></td><td> const</td>
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00109">109</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__TypedSeqId___8hpp_source.html#l00093">CGC_TypedSeqId_Base::e_External</a>, <a class="el" href="GC__TypedSeqId___8hpp_source.html#l00090">CGC_TypedSeqId_Base::e_Genbank</a>, <a class="el" href="GC__SeqIdAlias_8hpp_source.html#l00063">CGC_SeqIdAlias::e_Gi</a>, <a class="el" href="GC__SeqIdAlias_8hpp_source.html#l00062">CGC_SeqIdAlias::e_Gpipe</a>, <a class="el" href="GC__SeqIdAlias_8hpp_source.html#l00059">CGC_SeqIdAlias::e_None</a>, <a class="el" href="GC__TypedSeqId___8hpp_source.html#l00092">CGC_TypedSeqId_Base::e_Private</a>, <a class="el" href="GC__SeqIdAlias_8hpp_source.html#l00061">CGC_SeqIdAlias::e_Public</a>, <a class="el" href="GC__TypedSeqId___8hpp_source.html#l00091">CGC_TypedSeqId_Base::e_Refseq</a>, <a class="el" href="group__GenClassSupport.html#ggae820720c5bbb78691337c9dfa21adf60a64c3acc11ffdb1be30ea339290bd1508">eUnknown</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00558">CGC_Sequence_Base::GetSeq_id_synonyms()</a>, <a class="el" href="ncbiobj_8hpp_source.html#l01401">CConstRef< C, Locker >::IsNull()</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00546">CGC_Sequence_Base::IsSetSeq_id_synonyms()</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, and <a class="el" href="ncbiexpt_8hpp_source.html#l00704">NCBI_THROW</a>.</p>
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||
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||
<p class="reference">Referenced by <a class="el" href="table__data__gcassembly_8cpp_source.html#l00361">CTableDataGCAssembly::GetObjectValue()</a>, <a class="el" href="table__data__gcassembly_8cpp_source.html#l00194">CTableDataGCAssembly::GetStringValue()</a>, and <a class="el" href="id__mapper_8cpp_source.html#l00634">CGencollIdMapper::x_FillGpipeTopRole()</a>.</p>
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<a id="acd4fe32c6de2b0e8dedcd8bf8ef63824"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#acd4fe32c6de2b0e8dedcd8bf8ef63824">◆ </a></span>GetTopLevelParent()</h2>
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<td class="memname"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> > CGC_Sequence::GetTopLevelParent </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
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||
<td> const</td>
|
||
</tr>
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||
</div><div class="memdoc">
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||
|
||
<p>Access the top-most parent sequence of this sequence. </p>
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||
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||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00101">101</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Sequence_8cpp_source.html#l00261">GetChrName()</a>.</p>
|
||
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||
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|
||
</div>
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<a id="aa2e987a62eb618ac135c6a2758008356"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#aa2e987a62eb618ac135c6a2758008356">◆ </a></span>GetUnitDisplayName()</h2>
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<td class="memname"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> CGC_Sequence::GetUnitDisplayName </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
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||
<td> const</td>
|
||
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||
</div><div class="memdoc">
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<p>Get full display name of assmebly unit. </p>
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||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00272">272</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Sequence_8cpp_source.html#l00074">GetAssemblyUnit()</a>.</p>
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||
|
||
</div>
|
||
</div>
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<a id="a6e5c88f0fc80f9d5961d86af401283ac"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a6e5c88f0fc80f9d5961d86af401283ac">◆ </a></span>HasRole()</h2>
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<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CGC_Sequence::HasRole </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td>
|
||
<td class="paramname"><em>Role</em></td><td>)</td>
|
||
<td> const</td>
|
||
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</div><div class="memdoc">
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00191">191</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Sequence___8hpp_source.html#l00737">CGC_Sequence_Base::CanGetRoles()</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00743">CGC_Sequence_Base::GetRoles()</a>, and <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>.</p>
|
||
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||
<p class="reference">Referenced by <a class="el" href="id__mapper_8cpp_source.html#l01169">CGencollIdMapper::x_CanSeqMeetSpec()</a>, <a class="el" href="id__mapper_8cpp_source.html#l00634">CGencollIdMapper::x_FillGpipeTopRole()</a>, <a class="el" href="GC__Sequence_8cpp_source.html#l00297">x_GetLength()</a>, <a class="el" href="id__mapper_8cpp_source.html#l01255">CGencollIdMapper::x_MakeSpecForSeq()</a>, <a class="el" href="id__mapper_8cpp_source.html#l00555">CGencollIdMapper::x_RecursiveSeqFix()</a>, and <a class="el" href="id__mapper_8cpp_source.html#l00517">CGencollIdMapper::x_StripPseudoSeq()</a>.</p>
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||
|
||
</div>
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||
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<a id="ac1305cb10786aee328e36acffbc957a4"></a>
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||
<h2 class="memtitle"><span class="permalink"><a href="#ac1305cb10786aee328e36acffbc957a4">◆ </a></span>IsOrganelle()</h2>
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<div class="memitem">
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<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CGC_Sequence::IsOrganelle </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
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||
</table>
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||
</div><div class="memdoc">
|
||
|
||
<p>Is this aN organelle sequence? </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00278">278</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Sequence_8cpp_source.html#l00261">GetChrName()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a3cd826101b3d1894c7b60a88a5aaafbd"></a>
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||
<h2 class="memtitle"><span class="permalink"><a href="#a3cd826101b3d1894c7b60a88a5aaafbd">◆ </a></span>operator=()</h2>
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<div class="memitem">
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||
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<td class="memname"><a class="el" href="classCGC__Sequence.html">CGC_Sequence</a>& CGC_Sequence::operator= </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCGC__Sequence.html">CGC_Sequence</a> & </td>
|
||
<td class="paramname"><em>value</em></td><td>)</td>
|
||
<td></td>
|
||
</tr>
|
||
</table>
|
||
</td>
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||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
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</table>
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||
</div><div class="memdoc">
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||
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</div>
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<a id="a5859114b1201a0469482e5bed4cb5512"></a>
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||
<h2 class="memtitle"><span class="permalink"><a href="#a5859114b1201a0469482e5bed4cb5512">◆ </a></span>x_GetChildren()</h2>
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<td class="memname">void CGC_Sequence::x_GetChildren </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Sequence.html#a0d82fcbe388f97270be93e2c4b799dd2">TSequenceList</a> & </td>
|
||
<td class="paramname"><em>children</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="classCGC__Sequence.html#aafb4f2050e6254a6eda2f5cafc8c0770">EChildrenSubset</a> </td>
|
||
<td class="paramname"><em>subset</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaed70b56b4ea98388e3d41c9ab02ba4b4">CGC_TaggedSequences::TState</a> </td>
|
||
<td class="paramname"><em>state</em>, </td>
|
||
</tr>
|
||
<tr>
|
||
<td class="paramkey"></td>
|
||
<td></td>
|
||
<td class="paramtype"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td>
|
||
<td class="paramname"><em>level</em> </td>
|
||
</tr>
|
||
<tr>
|
||
<td></td>
|
||
<td>)</td>
|
||
<td></td><td> const</td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">protected</span></span> </td>
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||
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||
</div><div class="memdoc">
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00212">212</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__Sequence_8hpp_source.html#l00102">eAll</a>, <a class="el" href="GC__Sequence_8hpp_source.html#l00101">eComponent</a>, <a class="el" href="GC__SequenceRole___8hpp_source.html#l00070">eGC_SequenceRole_component</a>, <a class="el" href="GC__SequenceRole___8hpp_source.html#l00069">eGC_SequenceRole_scaffold</a>, <a class="el" href="GC__Sequence_8hpp_source.html#l00100">eScaffold</a>, <a class="el" href="group__GenClassSupport.html#ggae820720c5bbb78691337c9dfa21adf60a64c3acc11ffdb1be30ea339290bd1508">eUnknown</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00629">CGC_Sequence_Base::GetSequences()</a>, <a class="el" href="njn__function_8hpp_source.html#l00105">max()</a>, <a class="el" href="ncbiexpt_8hpp_source.html#l00704">NCBI_THROW</a>, and <a class="el" href="ncbi__server__info_8c_source.html#l00103">tag</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Sequence_8cpp_source.html#l00204">GetChildren()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<a id="a5dbbcd4cac77172282cd7e84b3f1a5d4"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a5dbbcd4cac77172282cd7e84b3f1a5d4">◆ </a></span>x_GetLength()</h2>
|
||
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||
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|
||
<div class="memproto">
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||
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|
||
<tr>
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<td class="mlabels-left">
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||
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|
||
<td class="memname"><a class="el" href="group__AppFramework.html#ga7576cbabf7b457b1a66d0a1d985fe176">TSeqPos</a> CGC_Sequence::x_GetLength </td>
|
||
<td>(</td>
|
||
<td class="paramname"></td><td>)</td>
|
||
<td> const</td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">protected</span></span> </td>
|
||
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|
||
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|
||
</div><div class="memdoc">
|
||
|
||
<p class="definition">Definition at line <a class="el" href="GC__Sequence_8cpp_source.html#l00297">297</a> of file <a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a>.</p>
|
||
|
||
<p class="reference">References <a class="el" href="GC__SequenceStats___8hpp_source.html#l00338">CGC_SequenceStats_Base::CanGetAll_scaf()</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00669">CGC_Sequence_Base::CanGetStats()</a>, <a class="el" href="GC__SequenceRole___8hpp_source.html#l00068">eGC_SequenceRole_chromosome</a>, <a class="el" href="GC__Scaf__stats___8hpp_source.html#l00086">CGC_Scaf_stats_Base::eStats_category_total_length</a>, <a class="el" href="GC__Sequence___8hpp_source.html#l00675">CGC_Sequence_Base::GetStats()</a>, <a class="el" href="GC__Sequence_8cpp_source.html#l00191">HasRole()</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00815">ITERATE</a>, <a class="el" href="GC__Sequence_8hpp_source.html#l00137">m_SeqLength</a>, and <a class="el" href="GC__Sequence_8hpp_source.html#l00138">m_SeqLengthRetrieved</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="GC__Sequence_8cpp_source.html#l00283">CanGetLength()</a>, and <a class="el" href="GC__Sequence_8cpp_source.html#l00288">GetLength()</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<h2 class="groupheader">Friends And Related Function Documentation</h2>
|
||
<a id="a74fee55b4b138a2262c7910bb79a9957"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a74fee55b4b138a2262c7910bb79a9957">◆ </a></span>CGC_Assembly</h2>
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||
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||
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||
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<td class="mlabels-left">
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<table class="memname">
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||
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|
||
<td class="memname">friend class <a class="el" href="classCGC__Assembly.html">CGC_Assembly</a></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">friend</span></span> </td>
|
||
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|
||
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|
||
</div><div class="memdoc">
|
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|
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8hpp_source.html#l00065">65</a> of file <a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a>.</p>
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||
|
||
</div>
|
||
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|
||
<a id="a9edda60340a687b14203e329f3250a47"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a9edda60340a687b14203e329f3250a47">◆ </a></span>CGC_Replicon</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="mlabels">
|
||
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|
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<td class="mlabels-left">
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||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">friend class <a class="el" href="classCGC__Replicon.html">CGC_Replicon</a></td>
|
||
</tr>
|
||
</table>
|
||
</td>
|
||
<td class="mlabels-right">
|
||
<span class="mlabels"><span class="mlabel">friend</span></span> </td>
|
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|
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||
</div><div class="memdoc">
|
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|
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8hpp_source.html#l00066">66</a> of file <a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a>.</p>
|
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<h2 class="groupheader">Member Data Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#af3a4310bbf5e065ef58ba729afacb1a3">◆ </a></span>m_Assembly</h2>
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<td class="memname"><a class="el" href="classCGC__Assembly.html">CGC_Assembly</a>* CGC_Sequence::m_Assembly</td>
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8hpp_source.html#l00130">130</a> of file <a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="GC__Sequence_8cpp_source.html#l00079">GetFullAssembly()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00623">CGC_Assembly::x_Index()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a1d65918d78a005c52c83b24faea72206">◆ </a></span>m_AssemblyUnit</h2>
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<td class="memname"><a class="el" href="classCGC__AssemblyUnit.html">CGC_AssemblyUnit</a>* CGC_Sequence::m_AssemblyUnit</td>
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8hpp_source.html#l00131">131</a> of file <a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="GC__Sequence_8cpp_source.html#l00074">GetAssemblyUnit()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00662">CGC_Assembly::x_Index()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#afb0849d62a020c7d7e7de1ab6cd86f73">◆ </a></span>m_ParentRel</h2>
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<td class="memname"><a class="el" href="group__dataspec__NCBI__GenomeCollection.html#gaed70b56b4ea98388e3d41c9ab02ba4b4">CGC_TaggedSequences::TState</a> CGC_Sequence::m_ParentRel</td>
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8hpp_source.html#l00134">134</a> of file <a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="GC__Sequence_8cpp_source.html#l00095">GetParentRelation()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00638">CGC_Assembly::x_Index()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a0d7bde39d4e5336f98b1aee569c29bab">◆ </a></span>m_ParentSequence</h2>
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<td class="memname"><a class="el" href="classCGC__Sequence.html">CGC_Sequence</a>* CGC_Sequence::m_ParentSequence</td>
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8hpp_source.html#l00133">133</a> of file <a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="GC__Sequence_8cpp_source.html#l00089">GetParent()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00693">CGC_Assembly::x_Index()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a0776b301e19a38f480a6fa2e180a3d27">◆ </a></span>m_Replicon</h2>
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<td class="memname"><a class="el" href="classCGC__Replicon.html">CGC_Replicon</a>* CGC_Sequence::m_Replicon</td>
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8hpp_source.html#l00132">132</a> of file <a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="GC__Sequence_8cpp_source.html#l00084">GetReplicon()</a>, and <a class="el" href="GC__Assembly_8cpp_source.html#l00678">CGC_Assembly::x_Index()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a3771c7052d65c98513c50301b7640241">◆ </a></span>m_SeqLength</h2>
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<td class="memname"><a class="el" href="group__AppFramework.html#ga7576cbabf7b457b1a66d0a1d985fe176">TSeqPos</a> CGC_Sequence::m_SeqLength</td>
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<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">protected</span></span> </td>
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8hpp_source.html#l00137">137</a> of file <a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="GC__Sequence_8cpp_source.html#l00297">x_GetLength()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a4f2131576e3d824e56949c7697cafe09">◆ </a></span>m_SeqLengthRetrieved</h2>
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<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CGC_Sequence::m_SeqLengthRetrieved</td>
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<p class="definition">Definition at line <a class="el" href="GC__Sequence_8hpp_source.html#l00138">138</a> of file <a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="GC__Sequence_8cpp_source.html#l00297">x_GetLength()</a>.</p>
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<hr/>The documentation for this class was generated from the following files:<ul>
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<li>include/objects/genomecoll/<a class="el" href="GC__Sequence_8hpp_source.html">GC_Sequence.hpp</a></li>
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<li>src/objects/genomecoll/<a class="el" href="GC__Sequence_8cpp_source.html">GC_Sequence.cpp</a></li>
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<address style="align: right;"><small>Modified on Fri Sep 20 14:57:49 2024 by modify_doxy.py rev. 669887</small></address>
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