1389 lines
224 KiB
HTML
1389 lines
224 KiB
HTML
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<meta name="generator" content="Doxygen 1.9.0"/>
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<title>NCBI C++ ToolKit: CBlastOptions Class Reference</title>
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<table cellspacing="0" cellpadding="0">
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<tbody>
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<tr style="height: 56px;">
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<td id="projectalign" style="padding-left: 0.5em;">
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<div id="projectname">NCBI C++ ToolKit
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</div>
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</td>
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</tr>
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/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */
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initMenu('',true,true,'/toolkit/','Search');
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/* @license-end */</script>
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</div><!-- top -->
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<div class="header">
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<div class="summary">
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<a href="#pub-types">Public Types</a> |
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<a href="#pub-methods">Public Member Functions</a> |
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<a href="#pri-methods">Private Member Functions</a> |
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<a href="#pri-attribs">Private Attributes</a> |
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<a href="#friends">Friends</a> |
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<a href="classCBlastOptions-members.html">List of all members</a> </div>
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<div class="headertitle">
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<div class="title">CBlastOptions Class Reference<div class="ingroups"><a class="el" href="group__ALGO.html">ALGORITHMS</a> » <a class="el" href="group__AlgoBlast.html">BLAST (Basic Local Alignment Search Tool)</a></div></div> </div>
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</div><!--header-->
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<div class="contents">
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<p>
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<a class="el" href = "https://www.ncbi.nlm.nih.gov/toolkitbookgh/?term=CBlastOptions">Search Toolkit Book for <i>CBlastOptions</i></a>
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</p>
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<p>Encapsulates ALL the BLAST algorithm's options.
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<a href="classCBlastOptions.html#details">More...</a></p>
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<p><code>#include <<a class="el" href="blast__options_8hpp_source.html">algo/blast/api/blast_options.hpp</a>></code></p>
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<div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
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<img id="dynsection-0-trigger" src="closed.png" alt="+"/> Inheritance diagram for CBlastOptions:</div>
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<div id="dynsection-0-summary" class="dynsummary" style="display:block;">
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</div>
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<div id="dynsection-0-content" class="dyncontent" style="display:none;">
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<div class="center"><img src="img__inherit__graph/classCBlastOptions__inherit__graph.png" border="0" usemap="#aCBlastOptions_inherit__map" alt="Inheritance graph"/></div>
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<map name="aCBlastOptions_inherit__map" id="aCBlastOptions_inherit__map">
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<area shape="rect" title="Encapsulates ALL the BLAST algorithm's options." alt="" coords="17,155,123,181"/>
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<area shape="rect" href="classCObject.html" title="CObject –." alt="" coords="35,80,105,107"/>
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<area shape="rect" href="classCDebugDumpable.html" title=" " alt="" coords="5,5,135,32"/>
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</map>
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<center><span class="legend">[<a href="graph_legend.html">legend</a>]</span></center></div>
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<div id="dynsection-1" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
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<img id="dynsection-1-trigger" src="closed.png" alt="+"/> Collaboration diagram for CBlastOptions:</div>
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<div id="dynsection-1-summary" class="dynsummary" style="display:block;">
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</div>
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<div id="dynsection-1-content" class="dyncontent" style="display:none;">
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<div class="center"><img src="img__coll__graph/classCBlastOptions__coll__graph.png" border="0" usemap="#aCBlastOptions_coll__map" alt="Collaboration graph"/></div>
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<map name="aCBlastOptions_coll__map" id="aCBlastOptions_coll__map">
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<area shape="rect" title="Encapsulates ALL the BLAST algorithm's options." alt="" coords="2000,339,2107,365"/>
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<area shape="rect" href="classCObject.html" title="CObject –." alt="" coords="941,505,1011,532"/>
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<area shape="rect" href="classCBlastOptionsRemote.html" title="Encapsulates all blast input parameters." alt="" coords="1623,215,1777,241"/>
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<area shape="rect" href="classCBlastOptionsLocal.html" title="Encapsulates all blast input parameters." alt="" coords="1631,505,1769,532"/>
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<area shape="rect" href="classCBlastScoringOptions.html" title="Wrapper class for BlastScoringOptions ." alt="" coords="1262,387,1413,413"/>
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<area shape="rect" href="classCQuerySetUpOptions.html" title="Wrapper class for QuerySetUpOptions ." alt="" coords="1263,437,1412,464"/>
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<area shape="rect" href="classCBlastEffectiveLengthsOptions.html" title="Wrapper class for BlastEffectiveLengthsOptions ." alt="" coords="1235,539,1440,565"/>
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<area shape="rect" href="classCBlastInitialWordOptions.html" title="Wrapper class for BlastInitialWordOptions ." alt="" coords="1253,640,1422,667"/>
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<area shape="rect" href="classCBlastExtensionOptions.html" title="Wrapper class for BlastExtensionOptions ." alt="" coords="1255,712,1420,739"/>
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<area shape="rect" href="classCLookupTableOptions.html" title="Wrapper class for LookupTableOptions ." alt="" coords="1262,791,1413,817"/>
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<area shape="rect" href="classCBlastHitSavingOptions.html" title="Wrapper class for BlastHitSavingOptions ." alt="" coords="1255,336,1419,363"/>
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<area shape="rect" href="classCBlastDatabaseOptions.html" title="Wrapper class for BlastDatabaseOptions ." alt="" coords="1256,589,1419,616"/>
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<area shape="rect" href="classCPSIBlastOptions.html" title="Wrapper class for PSIBlastOptions ." alt="" coords="1273,869,1402,896"/>
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<area shape="rect" title=" " alt="" coords="169,5,258,32"/>
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<area shape="rect" href="classpair__base__member.html" title="Template used for empty base class optimization." alt="" coords="124,57,303,98"/>
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<area shape="rect" title=" " alt="" coords="5,64,57,91"/>
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<area shape="rect" href="structSWindowMaskerOptions.html" title="Filtering options for organism-specific filtering with Window Masker." alt="" coords="130,377,297,404"/>
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<area shape="rect" href="structSRepeatFilterOptions.html" title="Filtering options for organsim specific repeats filtering." alt="" coords="140,428,287,455"/>
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<area shape="rect" href="structSDustOptions.html" title="Options for dust algorithm, applies only to nucl." alt="" coords="161,479,265,505"/>
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<area shape="rect" href="structSSegOptions.html" title="Options for SEG algorithm, applies only to protein-protein comparisons." alt="" coords="164,276,263,303"/>
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<area shape="rect" href="structSReadQualityOptions.html" title="Filtering options for mapping next-generation sequences." alt="" coords="139,327,287,353"/>
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<area shape="rect" href="structBlastExtensionOptions.html" title="Options used for gapped extension These include: a." alt="" coords="899,825,1053,852"/>
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<area shape="rect" href="structLookupTableOptions.html" title="Options needed to construct a lookup table Also needed: query sequence and query length." alt="" coords="905,904,1047,931"/>
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<area shape="rect" href="structPSIBlastOptions.html" title="Options used in protein BLAST only (PSI, PHI, RPS and translated BLAST) Some of these possibly should..." alt="" coords="917,955,1035,981"/>
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</map>
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<center><span class="legend">[<a href="graph_legend.html">legend</a>]</span></center></div>
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<table class="memberdecls">
|
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
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Public Types</h2></td></tr>
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<tr class="memitem:a92083ed20564d2c4e2f589744ea1c8ab"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8ab">EAPILocality</a> { <a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8aba1fe87d323d4d1756e83255e6ba75c098">eLocal</a>
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||
, <a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8aba87884dabc48ea44edfb5da005c3d6bc5">eRemote</a>
|
||
, <a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8aba6ac525e31d6dac0e666ebcd2e068f42b">eBoth</a>
|
||
}</td></tr>
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||
<tr class="memdesc:a92083ed20564d2c4e2f589744ea1c8ab"><td class="mdescLeft"> </td><td class="mdescRight">Enumerates the possible contexts in which objects of this type can be used. <a href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8ab">More...</a><br /></td></tr>
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<tr class="separator:a92083ed20564d2c4e2f589744ea1c8ab"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a1dcc3f6e5ae8a1e44ef4c658071bb828"><td class="memItemLeft" align="right" valign="top">typedef ncbi::objects::CBlast4_parameters </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#a1dcc3f6e5ae8a1e44ef4c658071bb828">TBlast4Opts</a></td></tr>
|
||
<tr class="memdesc:a1dcc3f6e5ae8a1e44ef4c658071bb828"><td class="mdescLeft"> </td><td class="mdescRight">This returns a list of parameters for remote searches. <a href="classCBlastOptions.html#a1dcc3f6e5ae8a1e44ef4c658071bb828">More...</a><br /></td></tr>
|
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<tr class="separator:a1dcc3f6e5ae8a1e44ef4c658071bb828"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_types_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCObject')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> { <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca2b8c59f649cc88eeb7eaeba939e2838d">eAllocFillNone</a> = 1
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca336d7ff658b673c2e8fe3aed9b155f04">eAllocFillZero</a>
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588ccab3631bf1c36b77f950d94372290deb76">eAllocFillPattern</a>
|
||
}</td></tr>
|
||
<tr class="memdesc:ga3cf5f3ac0aef32c4aab1fa66513588cc"><td class="mdescLeft"> </td><td class="mdescRight">Control filling of newly allocated memory. <a href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">More...</a><br /></td></tr>
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||
<tr class="separator:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCObjectCounterLocker.html">CObjectCounterLocker</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">TLockerType</a></td></tr>
|
||
<tr class="memdesc:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Default locker type for <a class="el" href="classCRef.html" title="CRef –.">CRef</a>. <a href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">More...</a><br /></td></tr>
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<tr class="separator:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef atomic< <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">TCounter</a></td></tr>
|
||
<tr class="memdesc:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Counter type is CAtomiCounter. <a href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">More...</a><br /></td></tr>
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||
<tr class="separator:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a></td></tr>
|
||
<tr class="memdesc:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Alias for value type of counter. <a href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
|
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Public Member Functions</h2></td></tr>
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||
<tr class="memitem:ga05fbe04f8bf66c56c015c02378d2c76e"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga05fbe04f8bf66c56c015c02378d2c76e">CBlastOptions</a> (<a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8ab">EAPILocality</a> locality=<a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8aba1fe87d323d4d1756e83255e6ba75c098">eLocal</a>)</td></tr>
|
||
<tr class="memdesc:ga05fbe04f8bf66c56c015c02378d2c76e"><td class="mdescLeft"> </td><td class="mdescRight">Constructor which allows specification of local or remote version of the options (might change in the future) <a href="group__AlgoBlast.html#ga05fbe04f8bf66c56c015c02378d2c76e">More...</a><br /></td></tr>
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||
<tr class="separator:ga05fbe04f8bf66c56c015c02378d2c76e"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gacdc32939d1c5fdec14f579c5024cbf6a"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gacdc32939d1c5fdec14f579c5024cbf6a">~CBlastOptions</a> ()</td></tr>
|
||
<tr class="memdesc:gacdc32939d1c5fdec14f579c5024cbf6a"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="group__AlgoBlast.html#gacdc32939d1c5fdec14f579c5024cbf6a">More...</a><br /></td></tr>
|
||
<tr class="separator:gacdc32939d1c5fdec14f579c5024cbf6a"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga8fa55d62e61bfd4615d9a61765f281f1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCBlastOptions.html">CBlastOptions</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8fa55d62e61bfd4615d9a61765f281f1">Clone</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga8fa55d62e61bfd4615d9a61765f281f1"><td class="mdescLeft"> </td><td class="mdescRight">Explicit deep copy of the Blast options object. <a href="group__AlgoBlast.html#ga8fa55d62e61bfd4615d9a61765f281f1">More...</a><br /></td></tr>
|
||
<tr class="separator:ga8fa55d62e61bfd4615d9a61765f281f1"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2b4dd7783b27fad7d93bd32c6b0fafd9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8ab">EAPILocality</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2b4dd7783b27fad7d93bd32c6b0fafd9">GetLocality</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga2b4dd7783b27fad7d93bd32c6b0fafd9"><td class="mdescLeft"> </td><td class="mdescRight">Return the locality used when the object was created. <a href="group__AlgoBlast.html#ga2b4dd7783b27fad7d93bd32c6b0fafd9">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2b4dd7783b27fad7d93bd32c6b0fafd9"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga7fa1f76306ed5c40089532ba4a249a31"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7fa1f76306ed5c40089532ba4a249a31">Validate</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga7fa1f76306ed5c40089532ba4a249a31"><td class="mdescLeft"> </td><td class="mdescRight">Validate the options. <a href="group__AlgoBlast.html#ga7fa1f76306ed5c40089532ba4a249a31">More...</a><br /></td></tr>
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<tr class="separator:ga7fa1f76306ed5c40089532ba4a249a31"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga8e5969e20bc8f5a8a288412ac8eae359"><td class="memItemLeft" align="right" valign="top"><a class="el" href="blast__types_8hpp.html#ae1c0ad647974cd781398aef388b3cf05">EProgram</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8e5969e20bc8f5a8a288412ac8eae359">GetProgram</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga8e5969e20bc8f5a8a288412ac8eae359"><td class="mdescLeft"> </td><td class="mdescRight">Accessors/Mutators for individual options. <a href="group__AlgoBlast.html#ga8e5969e20bc8f5a8a288412ac8eae359">More...</a><br /></td></tr>
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<tr class="separator:ga8e5969e20bc8f5a8a288412ac8eae359"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga65cb6ed1299435b012663e20642d2ae2"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga65cb6ed1299435b012663e20642d2ae2">SetProgram</a> (<a class="el" href="blast__types_8hpp.html#ae1c0ad647974cd781398aef388b3cf05">EProgram</a> p)</td></tr>
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<tr class="memdesc:ga65cb6ed1299435b012663e20642d2ae2"><td class="mdescLeft"> </td><td class="mdescRight">Sets the task this object is best suited for. <a href="group__AlgoBlast.html#ga65cb6ed1299435b012663e20642d2ae2">More...</a><br /></td></tr>
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<tr class="separator:ga65cb6ed1299435b012663e20642d2ae2"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga77eaacea06972fe91f289976a1d7a62f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="blast__program_8h.html#add583be8b053f8ed33e23e66131b5174">EBlastProgramType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga77eaacea06972fe91f289976a1d7a62f">GetProgramType</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga77eaacea06972fe91f289976a1d7a62f"><td class="mdescLeft"> </td><td class="mdescRight">Returns the CORE BLAST notion of program type. <a href="group__AlgoBlast.html#ga77eaacea06972fe91f289976a1d7a62f">More...</a><br /></td></tr>
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<tr class="separator:ga77eaacea06972fe91f289976a1d7a62f"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga6931042b9d7c3880099c1b477287c057"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6931042b9d7c3880099c1b477287c057">IsIterativeSearch</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ga6931042b9d7c3880099c1b477287c057"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga9c9a2286d8eafd13f440a7233a43cf07"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9c9a2286d8eafd13f440a7233a43cf07">GetWordThreshold</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga9c9a2286d8eafd13f440a7233a43cf07"><td class="mdescLeft"> </td><td class="mdescRight">Returns WordThreshold. <a href="group__AlgoBlast.html#ga9c9a2286d8eafd13f440a7233a43cf07">More...</a><br /></td></tr>
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<tr class="separator:ga9c9a2286d8eafd13f440a7233a43cf07"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga5b3dba6385786a82e13322ef864f26be"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5b3dba6385786a82e13322ef864f26be">SetWordThreshold</a> (double w)</td></tr>
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<tr class="memdesc:ga5b3dba6385786a82e13322ef864f26be"><td class="mdescLeft"> </td><td class="mdescRight">Sets WordThreshold. <a href="group__AlgoBlast.html#ga5b3dba6385786a82e13322ef864f26be">More...</a><br /></td></tr>
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<tr class="separator:ga5b3dba6385786a82e13322ef864f26be"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gac92f5937a6953f4cb86dbc3b66055911"><td class="memItemLeft" align="right" valign="top"><a class="el" href="blast__options_8h.html#aefc60e8ecc9d20fd4134c93270eaba10">ELookupTableType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gac92f5937a6953f4cb86dbc3b66055911">GetLookupTableType</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:gac92f5937a6953f4cb86dbc3b66055911"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaf7a2732924b92f2059b58cc9438cd0e9"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf7a2732924b92f2059b58cc9438cd0e9">SetLookupTableType</a> (<a class="el" href="blast__options_8h.html#aefc60e8ecc9d20fd4134c93270eaba10">ELookupTableType</a> <a class="el" href="structtype.html">type</a>)</td></tr>
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<tr class="separator:gaf7a2732924b92f2059b58cc9438cd0e9"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaf44eb981b90fa0857ded5a28f18b941f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf44eb981b90fa0857ded5a28f18b941f">GetWordSize</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:gaf44eb981b90fa0857ded5a28f18b941f"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga8c4346363c3f4cb27b8a096a4b537fd6"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8c4346363c3f4cb27b8a096a4b537fd6">SetWordSize</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> ws)</td></tr>
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<tr class="separator:ga8c4346363c3f4cb27b8a096a4b537fd6"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaf8d7216da92b180b01fc7b5b78198316"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Portability.html#ga7b0b4ab610750dd0972e12d57827a00f">Uint4</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf8d7216da92b180b01fc7b5b78198316">GetLookupTableStride</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:gaf8d7216da92b180b01fc7b5b78198316"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaef56629971fa1b9ad6515f5982e5ea58"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaef56629971fa1b9ad6515f5982e5ea58">SetLookupTableStride</a> (<a class="el" href="group__Portability.html#ga7b0b4ab610750dd0972e12d57827a00f">Uint4</a> <a class="el" href="table2asn__context_8hpp.html#a4a166b59119c660536919d528607e787a3a6d0284e743dc4a9b86f97d6dd1a3bf">val</a>)</td></tr>
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<tr class="separator:gaef56629971fa1b9ad6515f5982e5ea58"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga630490a715b479ebad9ce1e8fd857d78"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga630490a715b479ebad9ce1e8fd857d78">GetLookupDbFilter</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ga630490a715b479ebad9ce1e8fd857d78"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga12b7340238bdcf02610d42257b137dc4"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga12b7340238bdcf02610d42257b137dc4">SetLookupDbFilter</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> <a class="el" href="table2asn__context_8hpp.html#a4a166b59119c660536919d528607e787a3a6d0284e743dc4a9b86f97d6dd1a3bf">val</a>)</td></tr>
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<tr class="separator:ga12b7340238bdcf02610d42257b137dc4"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaf646cfc1cde3cae7351fea388064d565"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Portability.html#ga3d5f143aac289609ee1d4e4cf3d5b014">Uint1</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf646cfc1cde3cae7351fea388064d565">GetMaxDbWordCount</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaf646cfc1cde3cae7351fea388064d565"><td class="mdescLeft"> </td><td class="mdescRight">Get maximum word count for lookup table word masking by database frequency. <a href="group__AlgoBlast.html#gaf646cfc1cde3cae7351fea388064d565">More...</a><br /></td></tr>
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<tr class="separator:gaf646cfc1cde3cae7351fea388064d565"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gae62cb7c91a76e04e97fea61d3d559bf1"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae62cb7c91a76e04e97fea61d3d559bf1">SetMaxDbWordCount</a> (<a class="el" href="group__Portability.html#ga3d5f143aac289609ee1d4e4cf3d5b014">Uint1</a> num)</td></tr>
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<tr class="memdesc:gae62cb7c91a76e04e97fea61d3d559bf1"><td class="mdescLeft"> </td><td class="mdescRight">Set maximum word count for lookup table word masking by database frequency. <a href="group__AlgoBlast.html#gae62cb7c91a76e04e97fea61d3d559bf1">More...</a><br /></td></tr>
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<tr class="separator:gae62cb7c91a76e04e97fea61d3d559bf1"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gab4ac68b10e79b8d4c3b488be557a41e8"><td class="memItemLeft" align="right" valign="top">unsigned char </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab4ac68b10e79b8d4c3b488be557a41e8">GetMBTemplateLength</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gab4ac68b10e79b8d4c3b488be557a41e8"><td class="mdescLeft"> </td><td class="mdescRight">Megablast only lookup table options. <a href="group__AlgoBlast.html#gab4ac68b10e79b8d4c3b488be557a41e8">More...</a><br /></td></tr>
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<tr class="separator:gab4ac68b10e79b8d4c3b488be557a41e8"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gab5ca8fe66b8164a8d14a191eb9964e36"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab5ca8fe66b8164a8d14a191eb9964e36">SetMBTemplateLength</a> (unsigned char <a class="el" href="ftds14_2freetds_2tds_2iconv_8c.html#a96bbf959016e4411c9e6b9812a8be60a">len</a>)</td></tr>
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<tr class="separator:gab5ca8fe66b8164a8d14a191eb9964e36"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga2185f1e23438f1711e66ec3e66b9fcee"><td class="memItemLeft" align="right" valign="top">unsigned char </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2185f1e23438f1711e66ec3e66b9fcee">GetMBTemplateType</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ga2185f1e23438f1711e66ec3e66b9fcee"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaabd2d09818a7f37a9b8b4a8fdeb7ef4d"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaabd2d09818a7f37a9b8b4a8fdeb7ef4d">SetMBTemplateType</a> (unsigned char <a class="el" href="structtype.html">type</a>)</td></tr>
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<tr class="separator:gaabd2d09818a7f37a9b8b4a8fdeb7ef4d"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga2131af6424ef4dc7418b36eb162beba6"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2131af6424ef4dc7418b36eb162beba6">ClearFilterOptions</a> ()</td></tr>
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<tr class="separator:ga2131af6424ef4dc7418b36eb162beba6"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga9a239b37a828bacb2a9a6b3611c6518c"><td class="memItemLeft" align="right" valign="top">char * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9a239b37a828bacb2a9a6b3611c6518c">GetFilterString</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga9a239b37a828bacb2a9a6b3611c6518c"><td class="mdescLeft"> </td><td class="mdescRight">Return the filtering string used. <a href="group__AlgoBlast.html#ga9a239b37a828bacb2a9a6b3611c6518c">More...</a><br /></td></tr>
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<tr class="separator:ga9a239b37a828bacb2a9a6b3611c6518c"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga9a594e2e4d2622854932d8650815b6b7"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9a594e2e4d2622854932d8650815b6b7">SetFilterString</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *<a class="el" href="dbapi_2driver_2ftds14_2freetds_2utils_2des_8c.html#ab5682fc514f083a7cb16235b1ffd1f5f">f</a>, <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> clear=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
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<tr class="separator:ga9a594e2e4d2622854932d8650815b6b7"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga8f007037154f5885b91f38efd9f6242b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8f007037154f5885b91f38efd9f6242b">GetMaskAtHash</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gac9dfcdd822b25490562061a9d1b3605b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gac9dfcdd822b25490562061a9d1b3605b">SetMaskAtHash</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> <a class="el" href="table2asn__context_8hpp.html#a4a166b59119c660536919d528607e787a3a6d0284e743dc4a9b86f97d6dd1a3bf">val</a>=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
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<tr class="separator:gac9dfcdd822b25490562061a9d1b3605b"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga823a8fb7cd6d9552847fa112eb238c8f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga823a8fb7cd6d9552847fa112eb238c8f">GetDustFiltering</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ga823a8fb7cd6d9552847fa112eb238c8f"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gad18c054b0a2a7ca30caf9515d579db36"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad18c054b0a2a7ca30caf9515d579db36">SetDustFiltering</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> <a class="el" href="table2asn__context_8hpp.html#a4a166b59119c660536919d528607e787a3a6d0284e743dc4a9b86f97d6dd1a3bf">val</a>=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
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<tr class="memitem:ga200ab94d47f0258d04cd286957394f59"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga200ab94d47f0258d04cd286957394f59">GetDustFilteringLevel</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gacf8ad023d8a72354575afb7d32e69d40"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gacf8ad023d8a72354575afb7d32e69d40">SetDustFilteringLevel</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> m)</td></tr>
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<tr class="memitem:gae8848391d2715ed59acf96ed9bca080b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae8848391d2715ed59acf96ed9bca080b">GetDustFilteringWindow</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga686b4c911fec45e912243804facc3a29"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga686b4c911fec45e912243804facc3a29">SetDustFilteringWindow</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> m)</td></tr>
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<tr class="memitem:gab490a44942675a2f6413138ade99d5d5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab490a44942675a2f6413138ade99d5d5">GetDustFilteringLinker</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga391b40ec17d25610c65a19ef2a01b1d8"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga391b40ec17d25610c65a19ef2a01b1d8">SetDustFilteringLinker</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> m)</td></tr>
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<tr class="memitem:gace3c6d64c70595c6ad1e226d5238fcc5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gace3c6d64c70595c6ad1e226d5238fcc5">GetSegFiltering</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gad2e97ad5b32d006c71c30dd92c69fbd8"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad2e97ad5b32d006c71c30dd92c69fbd8">SetSegFiltering</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> <a class="el" href="table2asn__context_8hpp.html#a4a166b59119c660536919d528607e787a3a6d0284e743dc4a9b86f97d6dd1a3bf">val</a>=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
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<tr class="memitem:gaab98670c90fcbeccb90ae605510d7896"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaab98670c90fcbeccb90ae605510d7896">GetSegFilteringWindow</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gad47fb0500c1ce6eeff72c70f5e07e503"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad47fb0500c1ce6eeff72c70f5e07e503">SetSegFilteringWindow</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> m)</td></tr>
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<tr class="memitem:ga084ce8e42995e7f2c145ce250672208e"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga084ce8e42995e7f2c145ce250672208e">GetSegFilteringLocut</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga9886b906da3421e61cebfa1a6b3bee78"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9886b906da3421e61cebfa1a6b3bee78">SetSegFilteringLocut</a> (double m)</td></tr>
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<tr class="memitem:ga7c01ece6937699b70f8c7e50915a26bc"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7c01ece6937699b70f8c7e50915a26bc">GetSegFilteringHicut</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga40186eea5751201914bad1b5058b088c"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga40186eea5751201914bad1b5058b088c">SetSegFilteringHicut</a> (double m)</td></tr>
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<tr class="memitem:gace0ca805421c028d2c32b7e8f8cae159"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gace0ca805421c028d2c32b7e8f8cae159">GetRepeatFiltering</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gace0ca805421c028d2c32b7e8f8cae159"><td class="mdescLeft"> </td><td class="mdescRight">Returns true if repeat filtering is on. <a href="group__AlgoBlast.html#gace0ca805421c028d2c32b7e8f8cae159">More...</a><br /></td></tr>
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<tr class="separator:gace0ca805421c028d2c32b7e8f8cae159"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gafa8e78e913e1d0dc184e37df8a4d3d65"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gafa8e78e913e1d0dc184e37df8a4d3d65">SetRepeatFiltering</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> <a class="el" href="table2asn__context_8hpp.html#a4a166b59119c660536919d528607e787a3a6d0284e743dc4a9b86f97d6dd1a3bf">val</a>=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
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<tr class="memdesc:gafa8e78e913e1d0dc184e37df8a4d3d65"><td class="mdescLeft"> </td><td class="mdescRight">Turns on repeat filtering using the default repeat database, namely kDefaultRepeatFilterDb. <a href="group__AlgoBlast.html#gafa8e78e913e1d0dc184e37df8a4d3d65">More...</a><br /></td></tr>
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<tr class="separator:gafa8e78e913e1d0dc184e37df8a4d3d65"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gae03f18da467992741f4d93161dd2c810"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae03f18da467992741f4d93161dd2c810">GetRepeatFilteringDB</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gae03f18da467992741f4d93161dd2c810"><td class="mdescLeft"> </td><td class="mdescRight">Returns the name of the repeat filtering database to use. <a href="group__AlgoBlast.html#gae03f18da467992741f4d93161dd2c810">More...</a><br /></td></tr>
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<tr class="memitem:ga571cf6fec1a1472bcded993bca7cdca8"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga571cf6fec1a1472bcded993bca7cdca8">SetRepeatFilteringDB</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *db)</td></tr>
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<tr class="memdesc:ga571cf6fec1a1472bcded993bca7cdca8"><td class="mdescLeft"> </td><td class="mdescRight">Sets the repeat filtering database to use. <a href="group__AlgoBlast.html#ga571cf6fec1a1472bcded993bca7cdca8">More...</a><br /></td></tr>
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<tr class="separator:ga571cf6fec1a1472bcded993bca7cdca8"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga0ca5264bc138163c637bdb5cecdc1e4d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga0ca5264bc138163c637bdb5cecdc1e4d">GetWindowMaskerTaxId</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga0ca5264bc138163c637bdb5cecdc1e4d"><td class="mdescLeft"> </td><td class="mdescRight">Returns the tax id used for the windowmasker database to use, if set via SetWindowMaskerTaxId (otherwise, returns 0) <a href="group__AlgoBlast.html#ga0ca5264bc138163c637bdb5cecdc1e4d">More...</a><br /></td></tr>
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<tr class="memitem:ga2d2109e797cc9993c1c23d1a40e36f70"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2d2109e797cc9993c1c23d1a40e36f70">SetWindowMaskerTaxId</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> taxid)</td></tr>
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<tr class="memdesc:ga2d2109e797cc9993c1c23d1a40e36f70"><td class="mdescLeft"> </td><td class="mdescRight">Sets the tax id to select an appropriate windowmasker database Conversion algorithm from tax id to database name is specific to NCBI, will not work outside NCBI. <a href="group__AlgoBlast.html#ga2d2109e797cc9993c1c23d1a40e36f70">More...</a><br /></td></tr>
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<tr class="separator:ga2d2109e797cc9993c1c23d1a40e36f70"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gac13c3161020fda8948ff14969a102c8f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gac13c3161020fda8948ff14969a102c8f">GetWindowMaskerDatabase</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gac13c3161020fda8948ff14969a102c8f"><td class="mdescLeft"> </td><td class="mdescRight">Return the name of the windowmasker database to use. <a href="group__AlgoBlast.html#gac13c3161020fda8948ff14969a102c8f">More...</a><br /></td></tr>
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<tr class="memitem:ga596b4ab44b9153fe22a0959455610d86"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga596b4ab44b9153fe22a0959455610d86">SetWindowMaskerDatabase</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *db)</td></tr>
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<tr class="memdesc:ga596b4ab44b9153fe22a0959455610d86"><td class="mdescLeft"> </td><td class="mdescRight">Sets the windowmasker database to use. <a href="group__AlgoBlast.html#ga596b4ab44b9153fe22a0959455610d86">More...</a><br /></td></tr>
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<tr class="memitem:gad49268266591412d01c5372cbf4b35c1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad49268266591412d01c5372cbf4b35c1">GetReadQualityFiltering</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gad49268266591412d01c5372cbf4b35c1"><td class="mdescLeft"> </td><td class="mdescRight">Returns true if next-generation read quality filtering is turned on. <a href="group__AlgoBlast.html#gad49268266591412d01c5372cbf4b35c1">More...</a><br /></td></tr>
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<tr class="memitem:ga5628308de0cfa56e195aaae634b8413e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5628308de0cfa56e195aaae634b8413e">SetReadQualityFiltering</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> <a class="el" href="table2asn__context_8hpp.html#a4a166b59119c660536919d528607e787a3a6d0284e743dc4a9b86f97d6dd1a3bf">val</a>=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
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<tr class="memdesc:ga5628308de0cfa56e195aaae634b8413e"><td class="mdescLeft"> </td><td class="mdescRight">Turn on/off next-generation read quality filtering with deafult parameters. <a href="group__AlgoBlast.html#ga5628308de0cfa56e195aaae634b8413e">More...</a><br /></td></tr>
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<tr class="separator:ga5628308de0cfa56e195aaae634b8413e"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaeb5bc51ab686ca4b9e0a28f977d48513"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaeb5bc51ab686ca4b9e0a28f977d48513">GetReadMaxFractionAmbiguous</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaeb5bc51ab686ca4b9e0a28f977d48513"><td class="mdescLeft"> </td><td class="mdescRight">Get maximum fraction of ambiguous bases for next-generation read quality filtering. <a href="group__AlgoBlast.html#gaeb5bc51ab686ca4b9e0a28f977d48513">More...</a><br /></td></tr>
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<tr class="separator:gaeb5bc51ab686ca4b9e0a28f977d48513"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga350ffb85d143557a2485ed501b2b6e6b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga350ffb85d143557a2485ed501b2b6e6b">SetReadMaxFractionAmbiguous</a> (double <a class="el" href="table2asn__context_8hpp.html#a4a166b59119c660536919d528607e787a3a6d0284e743dc4a9b86f97d6dd1a3bf">val</a>)</td></tr>
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<tr class="memdesc:ga350ffb85d143557a2485ed501b2b6e6b"><td class="mdescLeft"> </td><td class="mdescRight">Set maximum fraction of ambiguous bases for next-generation read quality filtering. <a href="group__AlgoBlast.html#ga350ffb85d143557a2485ed501b2b6e6b">More...</a><br /></td></tr>
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<tr class="separator:ga350ffb85d143557a2485ed501b2b6e6b"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gac00e140d80527b34d77cd12426d7f82d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gac00e140d80527b34d77cd12426d7f82d">GetReadMinDimerEntropy</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gac00e140d80527b34d77cd12426d7f82d"><td class="mdescLeft"> </td><td class="mdescRight">Get minimum dimer entropy for next-generation read quality filtering. <a href="group__AlgoBlast.html#gac00e140d80527b34d77cd12426d7f82d">More...</a><br /></td></tr>
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<tr class="memitem:gaa8c37debb61cd33b44c1c08bfe026f2e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa8c37debb61cd33b44c1c08bfe026f2e">SetReadMinDimerEntropy</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="table2asn__context_8hpp.html#a4a166b59119c660536919d528607e787a3a6d0284e743dc4a9b86f97d6dd1a3bf">val</a>)</td></tr>
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<tr class="memdesc:gaa8c37debb61cd33b44c1c08bfe026f2e"><td class="mdescLeft"> </td><td class="mdescRight">Set minimum dimer entropy for next-generation read quality filtering. <a href="group__AlgoBlast.html#gaa8c37debb61cd33b44c1c08bfe026f2e">More...</a><br /></td></tr>
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<tr class="memitem:ga47432178ba88239285673aa557e7820b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__Seqloc.html#ga2d4d48fde1d3f62563eac193a3b5afae">objects::ENa_strand</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga47432178ba88239285673aa557e7820b">GetStrandOption</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga10d0e861fb8efbd55d0eac4f27d633d8"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga10d0e861fb8efbd55d0eac4f27d633d8">SetStrandOption</a> (<a class="el" href="group__dataspec__NCBI__Seqloc.html#ga2d4d48fde1d3f62563eac193a3b5afae">objects::ENa_strand</a> s)</td></tr>
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<tr class="memitem:ga91bad43c92f2f00c079bad7ac70f27f3"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga91bad43c92f2f00c079bad7ac70f27f3">GetQueryGeneticCode</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga43a4db9ea4acda8b4aa804d8731aaae4"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga43a4db9ea4acda8b4aa804d8731aaae4">SetQueryGeneticCode</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> gc)</td></tr>
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<tr class="memitem:gad65477a8af87de51746db8ffc865102a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad65477a8af87de51746db8ffc865102a">GetWindowSize</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga1731f4c10fc103c01a61576642418e9c"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga1731f4c10fc103c01a61576642418e9c">SetWindowSize</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> w)</td></tr>
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<tr class="memitem:ga53692fa75161289338aa8d3230f1d497"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga53692fa75161289338aa8d3230f1d497">GetOffDiagonalRange</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga6e40c76ffe2a07e481a1fe70b6160b15"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6e40c76ffe2a07e481a1fe70b6160b15">SetOffDiagonalRange</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="njn__localmaxstatutil_8hpp.html#a528746e9ddcc245107c2546995139b42">r</a>)</td></tr>
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<tr class="memitem:gaaefed60b82816b8d47e91fde8decbbb0"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaaefed60b82816b8d47e91fde8decbbb0">GetXDropoff</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gaba75f9b0c9af50ef58721f9dc43c133e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaba75f9b0c9af50ef58721f9dc43c133e">SetXDropoff</a> (double x)</td></tr>
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<tr class="memitem:gacaadb90776e04ba9160da08f0339161c"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gacaadb90776e04ba9160da08f0339161c">GetGapXDropoff</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga8b4cb3bf3139e931d8690dfa0ccf2f7f"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8b4cb3bf3139e931d8690dfa0ccf2f7f">SetGapXDropoff</a> (double x)</td></tr>
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<tr class="memitem:gab77643ff13276a49294349114af9067e"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab77643ff13276a49294349114af9067e">GetGapXDropoffFinal</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga6f38e2838dff993e63a9609936d12c63"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6f38e2838dff993e63a9609936d12c63">SetGapXDropoffFinal</a> (double x)</td></tr>
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<tr class="memitem:gab7055b531cbc362ac8255cbf384a5fe1"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab7055b531cbc362ac8255cbf384a5fe1">GetGapTrigger</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gab2249fe97599c07a0532fbc45035bab4"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab2249fe97599c07a0532fbc45035bab4">SetGapTrigger</a> (double <a class="el" href="thrddgri_8c.html#ac0814c7f6d26f2f867552032d5314c9c">g</a>)</td></tr>
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<tr class="memitem:ga2a5238a7ee9d88fe9fe0b10d74f107f5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="blast__options_8h.html#a27ac4a8b1adf9fcebfd3c1c17003be7e">EBlastPrelimGapExt</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2a5238a7ee9d88fe9fe0b10d74f107f5">GetGapExtnAlgorithm</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga28e2a3c83591589c68e64263adb68638"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga28e2a3c83591589c68e64263adb68638">SetGapExtnAlgorithm</a> (<a class="el" href="blast__options_8h.html#a27ac4a8b1adf9fcebfd3c1c17003be7e">EBlastPrelimGapExt</a> <a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)</td></tr>
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<tr class="memitem:gaa745d029d6836b07a3295859c93a14dc"><td class="memItemLeft" align="right" valign="top"><a class="el" href="blast__options_8h.html#ab1a1b3bc1009296f1aa84a645cb0cede">EBlastTbackExt</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa745d029d6836b07a3295859c93a14dc">GetGapTracebackAlgorithm</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga582c59dcef8631e5676e74bba8c5a1fa"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga582c59dcef8631e5676e74bba8c5a1fa">SetGapTracebackAlgorithm</a> (<a class="el" href="blast__options_8h.html#ab1a1b3bc1009296f1aa84a645cb0cede">EBlastTbackExt</a> <a class="el" href="ncbi__localip_8c.html#a0ea8a85723620c90be9fd2a693f12a59">a</a>)</td></tr>
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<tr class="memitem:gab431e9bac580700adc9cd4b50064d411"><td class="memItemLeft" align="right" valign="top"><a class="el" href="composition__constants_8h.html#a13a00fe8dcff838754d4d76347612fbd">ECompoAdjustModes</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab431e9bac580700adc9cd4b50064d411">GetCompositionBasedStats</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga094648b2dddbae728de84b18ae627ec3"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga094648b2dddbae728de84b18ae627ec3">SetCompositionBasedStats</a> (<a class="el" href="composition__constants_8h.html#a13a00fe8dcff838754d4d76347612fbd">ECompoAdjustModes</a> <a class="el" href="mdb__load_8c.html#a1ea5d0cb93f22f7d0fdf804bd68c3326">mode</a>)</td></tr>
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<tr class="memitem:gab0477677b5025e2e50c584a335d915df"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab0477677b5025e2e50c584a335d915df">GetSmithWatermanMode</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gae3a3e8714564b6c23f7a0f89800d4caa"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae3a3e8714564b6c23f7a0f89800d4caa">SetSmithWatermanMode</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> m=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
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<tr class="memitem:ga017925e649bbaba24776a11d21dab1ef"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga017925e649bbaba24776a11d21dab1ef">GetUnifiedP</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga62b2de75e8c7d0c965fb1ddabf913250"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga62b2de75e8c7d0c965fb1ddabf913250">SetUnifiedP</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> u=0)</td></tr>
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<tr class="memitem:gaa54f8ab4cd2076dd71e6e294a5aaa3a0"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa54f8ab4cd2076dd71e6e294a5aaa3a0">GetMaxMismatches</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gadf4f811ec32e842ff098c99af5b95e3a"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gadf4f811ec32e842ff098c99af5b95e3a">SetMaxMismatches</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> m)</td></tr>
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<tr class="memitem:ga60bbe168373afba76bf66ce43c14df7c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga60bbe168373afba76bf66ce43c14df7c">GetMismatchWindow</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gaf47cc9f3b7772bee8306f59367d005b4"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf47cc9f3b7772bee8306f59367d005b4">SetMismatchWindow</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> w)</td></tr>
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<tr class="memitem:gadb503b71202cac3deba37f5a7b5c34ae"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gadb503b71202cac3deba37f5a7b5c34ae">GetChaining</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gabbd33a6e37fcd6ab891904f7b8d5d2b2"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gabbd33a6e37fcd6ab891904f7b8d5d2b2">SetChaining</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> ch)</td></tr>
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<tr class="memitem:ga5a319413f959aacafe22dc2506ced4f3"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5a319413f959aacafe22dc2506ced4f3">GetHitlistSize</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga426ed44d0f789af58519a4f71bd7e170"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga426ed44d0f789af58519a4f71bd7e170">SetHitlistSize</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> s)</td></tr>
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<tr class="memitem:ga8cb170ffa2afc1f7dfd8a21474fbefd7"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8cb170ffa2afc1f7dfd8a21474fbefd7">GetMaxNumHspPerSequence</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gafe0262531a141296e1c2a3e80a13c36a"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gafe0262531a141296e1c2a3e80a13c36a">SetMaxNumHspPerSequence</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> m)</td></tr>
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<tr class="memitem:ga0f5c2600cb339a9b4c02062f86b4dcee"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga0f5c2600cb339a9b4c02062f86b4dcee">GetMaxHspsPerSubject</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gaf1a16770da1ba484cabb2240b4241b71"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf1a16770da1ba484cabb2240b4241b71">SetMaxHspsPerSubject</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> m)</td></tr>
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<tr class="memitem:gadd276b9d1d4f7173a2fa751fde7dc7db"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gadd276b9d1d4f7173a2fa751fde7dc7db">GetCullingLimit</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gaf4a101408c7e4c23a7e258809f661c27"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf4a101408c7e4c23a7e258809f661c27">SetCullingLimit</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> s)</td></tr>
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<tr class="memitem:gaf63fe0baf7c783d76036b823483ce6a1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf63fe0baf7c783d76036b823483ce6a1">GetSubjectBestHit</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga68250a310aada683c85c74872c44cf58"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga68250a310aada683c85c74872c44cf58">SetSubjectBestHit</a> ()</td></tr>
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<tr class="memitem:ga465e3a2e6d9b5882003495a8702ada35"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga465e3a2e6d9b5882003495a8702ada35">GetBestHitOverhang</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga896bb6372369880c0de1177446fdf4f8"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga896bb6372369880c0de1177446fdf4f8">SetBestHitOverhang</a> (double overhang)</td></tr>
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<tr class="memitem:gae1db40bf89798c279727c26c57395743"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae1db40bf89798c279727c26c57395743">GetBestHitScoreEdge</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gace182a5a5b0d9d5e9f5b7e0fb251db51"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gace182a5a5b0d9d5e9f5b7e0fb251db51">SetBestHitScoreEdge</a> (double score_edge)</td></tr>
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<tr class="memitem:ga18d8cea8df11fc6971d0dfaee12419be"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga18d8cea8df11fc6971d0dfaee12419be">GetEvalueThreshold</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga2be138173e63df815c709cdf00c7eddc"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2be138173e63df815c709cdf00c7eddc">SetEvalueThreshold</a> (double eval)</td></tr>
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<tr class="memitem:ga58d77cc53ac82733f04873385d0a4b06"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga58d77cc53ac82733f04873385d0a4b06">GetCutoffScore</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gade696cf6f6ea8ffbe278dc87702e7b2b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gade696cf6f6ea8ffbe278dc87702e7b2b">SetCutoffScore</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> s)</td></tr>
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<tr class="memitem:ga539718912339bad21b4d766eab2bccef"><td class="memItemLeft" align="right" valign="top">vector< double > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga539718912339bad21b4d766eab2bccef">GetCutoffScoreCoeffs</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga6b7da9292e181de92820b16a0f41c5e0"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6b7da9292e181de92820b16a0f41c5e0">SetCutoffScoreCoeffs</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> vector< double > &c)</td></tr>
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<tr class="memitem:gaf0795f9e683a4e177b90978e005854bf"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf0795f9e683a4e177b90978e005854bf">GetPercentIdentity</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga8e9c786e547ae2f53b5fe472178dec1f"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8e9c786e547ae2f53b5fe472178dec1f">SetPercentIdentity</a> (double p)</td></tr>
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<tr class="memitem:ga3b23a1dabe4ff11f99eec4876deda719"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3b23a1dabe4ff11f99eec4876deda719">GetMaxEditDistance</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gaebdea246b71e4b240b363df04ef2a8fa"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaebdea246b71e4b240b363df04ef2a8fa">SetMaxEditDistance</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> e)</td></tr>
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<tr class="memitem:ga5b5326a6efaa7d7d86ac4bf202da40c1"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5b5326a6efaa7d7d86ac4bf202da40c1">GetQueryCovHspPerc</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga30d1831e93f1c34ca5c1819c562bcd14"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga30d1831e93f1c34ca5c1819c562bcd14">SetQueryCovHspPerc</a> (double p)</td></tr>
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<tr class="memitem:ga4e2170cbf4f482f6d400c5edf488ba5b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga4e2170cbf4f482f6d400c5edf488ba5b">GetMinDiagSeparation</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga9fb672c5f3ff65b5bffdbd9c1e0efcae"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9fb672c5f3ff65b5bffdbd9c1e0efcae">SetMinDiagSeparation</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> d)</td></tr>
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<tr class="memitem:gaa2d20197d4991a9db2714d0d938b3871"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa2d20197d4991a9db2714d0d938b3871">GetSumStatisticsMode</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaa2d20197d4991a9db2714d0d938b3871"><td class="mdescLeft"> </td><td class="mdescRight">Sum statistics options. <a href="group__AlgoBlast.html#gaa2d20197d4991a9db2714d0d938b3871">More...</a><br /></td></tr>
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<tr class="separator:gaa2d20197d4991a9db2714d0d938b3871"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga61af4c6298916bd0523c649c8a62fd0b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga61af4c6298916bd0523c649c8a62fd0b">SetSumStatisticsMode</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> m=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
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<tr class="memitem:ga8908f5f0daab87e43563fab51521ea71"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8908f5f0daab87e43563fab51521ea71">GetLongestIntronLength</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga8908f5f0daab87e43563fab51521ea71"><td class="mdescLeft"> </td><td class="mdescRight">for linking HSPs with uneven gaps <a href="group__AlgoBlast.html#ga8908f5f0daab87e43563fab51521ea71">More...</a><br /></td></tr>
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<tr class="separator:ga8908f5f0daab87e43563fab51521ea71"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaea88db5d05143cfd51cec19690ecc5cc"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaea88db5d05143cfd51cec19690ecc5cc">SetLongestIntronLength</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="sljitNativeS390X_8c.html#a8e411d1b14ee546fc1cbc533c50831f9">l</a>)</td></tr>
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<tr class="memdesc:gaea88db5d05143cfd51cec19690ecc5cc"><td class="mdescLeft"> </td><td class="mdescRight">for linking HSPs with uneven gaps <a href="group__AlgoBlast.html#gaea88db5d05143cfd51cec19690ecc5cc">More...</a><br /></td></tr>
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<tr class="separator:gaea88db5d05143cfd51cec19690ecc5cc"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gafadf2532f2f7184186e84b1423562af9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gafadf2532f2f7184186e84b1423562af9">GetGappedMode</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gafadf2532f2f7184186e84b1423562af9"><td class="mdescLeft"> </td><td class="mdescRight">Returns true if gapped BLAST is set, false otherwise. <a href="group__AlgoBlast.html#gafadf2532f2f7184186e84b1423562af9">More...</a><br /></td></tr>
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<tr class="memitem:gae667a65742217c326c2af68bee06116a"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae667a65742217c326c2af68bee06116a">SetGappedMode</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> m=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
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<tr class="memitem:gaeab604df3bfe4d138178791062aa7b60"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaeab604df3bfe4d138178791062aa7b60">GetMaskLevel</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaeab604df3bfe4d138178791062aa7b60"><td class="mdescLeft"> </td><td class="mdescRight">Masklevel filtering option -RMH-. <a href="group__AlgoBlast.html#gaeab604df3bfe4d138178791062aa7b60">More...</a><br /></td></tr>
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<tr class="memitem:ga7f237ab6bc737adf66c146a062b52dba"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7f237ab6bc737adf66c146a062b52dba">SetMaskLevel</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> s)</td></tr>
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<tr class="memitem:ga89fcd68a420607508de7c72f79fbd5d1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga89fcd68a420607508de7c72f79fbd5d1">GetComplexityAdjMode</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga89fcd68a420607508de7c72f79fbd5d1"><td class="mdescLeft"> </td><td class="mdescRight">Returns true if cross_match-like complexity adjusted. <a href="group__AlgoBlast.html#ga89fcd68a420607508de7c72f79fbd5d1">More...</a><br /></td></tr>
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<tr class="memitem:ga4fb2db4507f258e5cb36c6d2fe0c1622"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga4fb2db4507f258e5cb36c6d2fe0c1622">SetComplexityAdjMode</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> m=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
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<tr class="memitem:gab46f137eff8825fbf0aef7b1c6d86215"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab46f137eff8825fbf0aef7b1c6d86215">GetLowScorePerc</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gab46f137eff8825fbf0aef7b1c6d86215"><td class="mdescLeft"> </td><td class="mdescRight">Sets a low score to drop ungapped alignments if hit list is full. <a href="group__AlgoBlast.html#gab46f137eff8825fbf0aef7b1c6d86215">More...</a><br /></td></tr>
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<tr class="memitem:ga644c18da92b726188f2f0da94438fda4"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga644c18da92b726188f2f0da94438fda4">SetLowScorePerc</a> (double p=0.0)</td></tr>
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<tr class="memitem:gad508d53eb28fd66933568d84f3979df2"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad508d53eb28fd66933568d84f3979df2">GetPaired</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga3c5c95c150cf10d1c49219962f91b6fe"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3c5c95c150cf10d1c49219962f91b6fe">SetPaired</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> p)</td></tr>
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<tr class="memitem:ga5e207fc033ff4b3dadf00604ff0ad4d5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5e207fc033ff4b3dadf00604ff0ad4d5">GetSpliceAlignments</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga5e207fc033ff4b3dadf00604ff0ad4d5"><td class="mdescLeft"> </td><td class="mdescRight">Splice HSPs for each query (for mappring RNA-Seq reads to a genome) <a href="group__AlgoBlast.html#ga5e207fc033ff4b3dadf00604ff0ad4d5">More...</a><br /></td></tr>
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<tr class="memitem:ga8b01b82cd5a7f3429e487ec3820a00ad"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8b01b82cd5a7f3429e487ec3820a00ad">SetSpliceAlignments</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> s)</td></tr>
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<tr class="memitem:gae78dde17fd94febb066d8fda85dbdfa9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae78dde17fd94febb066d8fda85dbdfa9">GetMatrixName</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga71626de7fd3660755d1bfe62655d10b1"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga71626de7fd3660755d1bfe62655d10b1">SetMatrixName</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *matrix)</td></tr>
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<tr class="memitem:gab17f4ad1afdfb1be6d1b3ec965e7c0d6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab17f4ad1afdfb1be6d1b3ec965e7c0d6">GetMatchReward</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gafee56f7b1433f920f9c850761cd520c8"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gafee56f7b1433f920f9c850761cd520c8">SetMatchReward</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="njn__localmaxstatutil_8hpp.html#a528746e9ddcc245107c2546995139b42">r</a>)</td></tr>
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<tr class="memitem:gaa1c03df04906708eefe3d1fdb9b06f67"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa1c03df04906708eefe3d1fdb9b06f67">GetMismatchPenalty</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga6d4ffa198d74f53c6d20e287c972ebe1"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6d4ffa198d74f53c6d20e287c972ebe1">SetMismatchPenalty</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> p)</td></tr>
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<tr class="memitem:gad11a3970fef6f1c85a82a1d19cc6bbff"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad11a3970fef6f1c85a82a1d19cc6bbff">GetGapOpeningCost</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga40d2f63e2d941d9651b1e4dd77f8f6e4"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga40d2f63e2d941d9651b1e4dd77f8f6e4">SetGapOpeningCost</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="thrddgri_8c.html#ac0814c7f6d26f2f867552032d5314c9c">g</a>)</td></tr>
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<tr class="memitem:ga6d1ddad9c8c034785a9c53085ed6f87d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6d1ddad9c8c034785a9c53085ed6f87d">GetGapExtensionCost</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga5d959dc3ccab7810497c7f6a4002a9c8"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5d959dc3ccab7810497c7f6a4002a9c8">SetGapExtensionCost</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> e)</td></tr>
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<tr class="memitem:ga2fea63025e8ded12ff53039308dde156"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2fea63025e8ded12ff53039308dde156">GetFrameShiftPenalty</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga548bf45356a8b0162315cf972bf1f97f"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga548bf45356a8b0162315cf972bf1f97f">SetFrameShiftPenalty</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> p)</td></tr>
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<tr class="memitem:ga8c0e5b301eac899fbc2eebf291ca2a79"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8c0e5b301eac899fbc2eebf291ca2a79">GetOutOfFrameMode</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga348fb3cdb5f1a2546285bc96f3600350"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga348fb3cdb5f1a2546285bc96f3600350">SetOutOfFrameMode</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> m=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
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<tr class="memitem:ga8e806ed2815758b229df393c540ef98e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Portability.html#gac9cc73bc670c02eb6146e38650740642">Int8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8e806ed2815758b229df393c540ef98e">GetDbLength</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga71db7a04b2b128c6ca8046a605e478d5"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga71db7a04b2b128c6ca8046a605e478d5">SetDbLength</a> (<a class="el" href="group__Portability.html#gac9cc73bc670c02eb6146e38650740642">Int8</a> <a class="el" href="sljitNativeS390X_8c.html#a8e411d1b14ee546fc1cbc533c50831f9">l</a>)</td></tr>
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<tr class="memitem:ga9a64c98125af45bfef04b741d2fbe528"><td class="memItemLeft" align="right" valign="top">unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9a64c98125af45bfef04b741d2fbe528">GetDbSeqNum</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga5c217039c92ff835aeb16cf45321a477"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5c217039c92ff835aeb16cf45321a477">SetDbSeqNum</a> (unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="lex_8newick_8cpp.html#aeab71244afb687f16d8c4f5ee9d6ef0e">n</a>)</td></tr>
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<tr class="memitem:gae68d67436a23b792e89cebb6aafa4d09"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Portability.html#gac9cc73bc670c02eb6146e38650740642">Int8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae68d67436a23b792e89cebb6aafa4d09">GetEffectiveSearchSpace</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga4d978114d55bc4059601e95cd89f9f62"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga4d978114d55bc4059601e95cd89f9f62">SetEffectiveSearchSpace</a> (<a class="el" href="group__Portability.html#gac9cc73bc670c02eb6146e38650740642">Int8</a> eff)</td></tr>
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<tr class="memitem:gaf505208c18257333ba957310e3aff69a"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf505208c18257333ba957310e3aff69a">SetEffectiveSearchSpace</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> vector< <a class="el" href="group__Portability.html#gac9cc73bc670c02eb6146e38650740642">Int8</a> > &eff)</td></tr>
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<tr class="memitem:ga06286c07e981dda678362359dac827b1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga06286c07e981dda678362359dac827b1">GetDbGeneticCode</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gab346f92a09c757c1d30d8dccb214a06e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab346f92a09c757c1d30d8dccb214a06e">SetDbGeneticCode</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> gc)</td></tr>
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<tr class="memitem:ga3303bc496d4f06f7596ab1030747bc8b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3303bc496d4f06f7596ab1030747bc8b">GetPHIPattern</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga00def6ffa44a90ab6ba55a52a2de7990"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga00def6ffa44a90ab6ba55a52a2de7990">SetPHIPattern</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *pattern, <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> is_dna)</td></tr>
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<tr class="memitem:gaaef03f3cc48f9fda770de9fab521448a"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaaef03f3cc48f9fda770de9fab521448a">GetInclusionThreshold</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga091555cb738eafdf1c5e595c6e1a225c"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga091555cb738eafdf1c5e595c6e1a225c">SetInclusionThreshold</a> (double u)</td></tr>
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<tr class="memitem:ga7d8a47541736ff55f1bafe2f9f5d7e0c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7d8a47541736ff55f1bafe2f9f5d7e0c">GetPseudoCount</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga152ccf718d3dfd455569170709513e7f"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga152ccf718d3dfd455569170709513e7f">SetPseudoCount</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> u)</td></tr>
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<tr class="memitem:gab84402f7633b7e8d041d933c51577cd3"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab84402f7633b7e8d041d933c51577cd3">GetIgnoreMsaMaster</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga59dc396d063f16fbb5417206577d719f"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga59dc396d063f16fbb5417206577d719f">SetIgnoreMsaMaster</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> <a class="el" href="table2asn__context_8hpp.html#a4a166b59119c660536919d528607e787a3a6d0284e743dc4a9b86f97d6dd1a3bf">val</a>)</td></tr>
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<tr class="memitem:ga43c0b01ea6332ddb06ada0ba2ed2c3f6"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga43c0b01ea6332ddb06ada0ba2ed2c3f6">GetDomainInclusionThreshold</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga3648573acb8ac00f535560b89acdbdca"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3648573acb8ac00f535560b89acdbdca">SetDomainInclusionThreshold</a> (double <a class="el" href="introspection__html_8hpp.html#a69350d8d4fccfd888dd9ff4a1c92ae60">th</a>)</td></tr>
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<tr class="memitem:gae3c9f23851ec3be2d2088dd36a007bb8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae3c9f23851ec3be2d2088dd36a007bb8">GetUseIndex</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gaa7608a555c5b8567e7788f4595b8316e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa7608a555c5b8567e7788f4595b8316e">GetForceIndex</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gaeb08809dff7b63b8e02b7fba946e28e6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaeb08809dff7b63b8e02b7fba946e28e6">GetIsOldStyleMBIndex</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gabbdf40756c5cb7eaad7b19647dcad0f2"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gabbdf40756c5cb7eaad7b19647dcad0f2">GetMBIndexLoaded</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga3b8df263af7768cf320d7a729dde773b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3b8df263af7768cf320d7a729dde773b">GetIndexName</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gadd782b43d1e406be191ac2557d88fe2b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gadd782b43d1e406be191ac2557d88fe2b">SetMBIndexLoaded</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> index_loaded=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
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<tr class="memitem:ga673f0280763f8793ba82cbe995a4c537"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga673f0280763f8793ba82cbe995a4c537">SetUseIndex</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> use_index=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &index_name="", <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> force_index=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a65e9886d74aaee76545e83dd09011727">false</a>, <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> old_style_index=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a65e9886d74aaee76545e83dd09011727">false</a>)</td></tr>
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<tr class="memitem:ga0a1f56458b99d8be94c282fbad4e99d0"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga0a1f56458b99d8be94c282fbad4e99d0">DebugDump</a> (<a class="el" href="classCDebugDumpContext.html">CDebugDumpContext</a> ddc, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga0a1f56458b99d8be94c282fbad4e99d0"><td class="mdescLeft"> </td><td class="mdescRight">Allows to dump a snapshot of the object. <a href="group__AlgoBlast.html#ga0a1f56458b99d8be94c282fbad4e99d0">More...</a><br /></td></tr>
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<tr class="separator:ga0a1f56458b99d8be94c282fbad4e99d0"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gae6dc7757832fd5935168548a2267bda8"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae6dc7757832fd5935168548a2267bda8">DoneDefaults</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gae694140c2221cfd11e1e31492b94d671"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCBlastOptions.html#a1dcc3f6e5ae8a1e44ef4c658071bb828">TBlast4Opts</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae694140c2221cfd11e1e31492b94d671">GetBlast4AlgoOpts</a> ()</td></tr>
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<tr class="memitem:ga39610b21d454a6b417fd525a79957380"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga39610b21d454a6b417fd525a79957380">operator==</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBlastOptions.html">CBlastOptions</a> &rhs) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gaa4106a01160214b4717998dc50c673a0"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa4106a01160214b4717998dc50c673a0">operator!=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBlastOptions.html">CBlastOptions</a> &rhs) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:a82654cbf415eac3a990fcabb9f3e2527"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#a82654cbf415eac3a990fcabb9f3e2527">SetRemoteProgramAndService_Blast3</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &p, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &s)</td></tr>
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<tr class="memdesc:a82654cbf415eac3a990fcabb9f3e2527"><td class="mdescLeft"> </td><td class="mdescRight">Set the program and service name for remote blast. <a href="classCBlastOptions.html#a82654cbf415eac3a990fcabb9f3e2527">More...</a><br /></td></tr>
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<tr class="separator:a82654cbf415eac3a990fcabb9f3e2527"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a9a2021dcd26de155f0a31298d9727bab"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#a9a2021dcd26de155f0a31298d9727bab">GetRemoteProgramAndService_Blast3</a> (<a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &p, <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &s) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:a9a2021dcd26de155f0a31298d9727bab"><td class="mdescLeft"> </td><td class="mdescRight">Get the program and service name for remote blast. <a href="classCBlastOptions.html#a9a2021dcd26de155f0a31298d9727bab">More...</a><br /></td></tr>
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<tr class="memitem:ga28195f971c3b0547b8def477ff69e723"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBlastOptionsMemento.html">CBlastOptionsMemento</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga28195f971c3b0547b8def477ff69e723">CreateSnapshot</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga28195f971c3b0547b8def477ff69e723"><td class="mdescLeft"> </td><td class="mdescRight">Create a snapshot of the state of this object for internal use of its data structures (BLAST C++ APIs only) <a href="group__AlgoBlast.html#ga28195f971c3b0547b8def477ff69e723">More...</a><br /></td></tr>
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<tr class="separator:ga28195f971c3b0547b8def477ff69e723"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gab3263c74d12782c131c8843598ab7be6"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab3263c74d12782c131c8843598ab7be6">SetDefaultsMode</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> dmode)</td></tr>
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<tr class="memdesc:gab3263c74d12782c131c8843598ab7be6"><td class="mdescLeft"> </td><td class="mdescRight">If this is true, remote options will ignore "Set" calls. <a href="group__AlgoBlast.html#gab3263c74d12782c131c8843598ab7be6">More...</a><br /></td></tr>
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<tr class="memitem:ga7cd21e6de2e6437d9b0b2cd63b6fc72c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7cd21e6de2e6437d9b0b2cd63b6fc72c">GetDefaultsMode</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="inherit_header pub_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCObject')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
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<tr class="memitem:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">CObject</a> (void)</td></tr>
|
||
<tr class="memdesc:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">More...</a><br /></td></tr>
|
||
<tr class="separator:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">CObject</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src)</td></tr>
|
||
<tr class="memdesc:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">More...</a><br /></td></tr>
|
||
<tr class="separator:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">~CObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCObject.html">CObject</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src) <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">More...</a><br /></td></tr>
|
||
<tr class="separator:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">CanBeDeleted</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object can be deleted. <a href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">More...</a><br /></td></tr>
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||
<tr class="separator:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">IsAllocatedInPool</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is allocated in memory pool (not system heap) <a href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">Referenced</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced. <a href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">ReferencedOnlyOnce</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced only once. <a href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">More...</a><br /></td></tr>
|
||
<tr class="separator:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">AddReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Add reference to object. <a href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">RemoveReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference to object. <a href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">More...</a><br /></td></tr>
|
||
<tr class="separator:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">ReleaseReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference without deleting object. <a href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">DoNotDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as not allocated in heap – do not delete this object. <a href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">More...</a><br /></td></tr>
|
||
<tr class="separator:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">DoDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as allocated in heap – object can be deleted. <a href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator for memory allocation. <a href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">operator new[]</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new[] operator for 'array' memory allocation. <a href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">More...</a><br /></td></tr>
|
||
<tr class="separator:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">operator delete</a> (void *ptr)</td></tr>
|
||
<tr class="memdesc:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator for memory deallocation. <a href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">More...</a><br /></td></tr>
|
||
<tr class="separator:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">operator delete[]</a> (void *ptr)</td></tr>
|
||
<tr class="memdesc:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete[] operator for memory deallocation. <a href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, void *place)</td></tr>
|
||
<tr class="memdesc:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator. <a href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">More...</a><br /></td></tr>
|
||
<tr class="separator:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">operator delete</a> (void *ptr, void *place)</td></tr>
|
||
<tr class="memdesc:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">More...</a><br /></td></tr>
|
||
<tr class="separator:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
|
||
<tr class="memdesc:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator using memory pool. <a href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">operator delete</a> (void *ptr, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
|
||
<tr class="memdesc:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
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||
<tr class="memitem:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ae8723856215191ef748f19ff73e8ba4e">CDebugDumpable</a> (void)</td></tr>
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||
<tr class="separator:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#acdeaaedfabb4cc4a64108dbb854f4b51">~CDebugDumpable</a> (void)</td></tr>
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||
<tr class="separator:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a4ff9ec248a38f17b7d8deb3f78318a37">DebugDumpText</a> (ostream &<a class="el" href="events__unit__test_8cpp.html#ac3c18c078fe416626b6c1dcc3e780245">out</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#aa0101dfdc0ae0cbd0cb1609c96f96229">DebugDumpFormat</a> (<a class="el" href="classCDebugDumpFormatter.html">CDebugDumpFormatter</a> &ddf, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a19047c92521e5f3ad2a14bab26a49b51">DumpToConsole</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
|
||
Private Member Functions</h2></td></tr>
|
||
<tr class="memitem:aa7f3c44104718cbf0a1cd2f21371bca2"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#aa7f3c44104718cbf0a1cd2f21371bca2">CBlastOptions</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBlastOptions.html">CBlastOptions</a> &bo)</td></tr>
|
||
<tr class="memdesc:aa7f3c44104718cbf0a1cd2f21371bca2"><td class="mdescLeft"> </td><td class="mdescRight">Prohibit copy c-tor. <a href="classCBlastOptions.html#aa7f3c44104718cbf0a1cd2f21371bca2">More...</a><br /></td></tr>
|
||
<tr class="separator:aa7f3c44104718cbf0a1cd2f21371bca2"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:a57526d5f3c22d5b16d95de4cf089afa0"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCBlastOptions.html">CBlastOptions</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#a57526d5f3c22d5b16d95de4cf089afa0">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBlastOptions.html">CBlastOptions</a> &bo)</td></tr>
|
||
<tr class="memdesc:a57526d5f3c22d5b16d95de4cf089afa0"><td class="mdescLeft"> </td><td class="mdescRight">Prohibit assignment operator. <a href="classCBlastOptions.html#a57526d5f3c22d5b16d95de4cf089afa0">More...</a><br /></td></tr>
|
||
<tr class="separator:a57526d5f3c22d5b16d95de4cf089afa0"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga78cd2a705d94e1039a1636337c93a211"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga78cd2a705d94e1039a1636337c93a211">x_Throwx</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &<a class="el" href="sljitNativeS390X_8c.html#aeb7583755c758ce530cb8093cb094346">msg</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga78cd2a705d94e1039a1636337c93a211"><td class="mdescLeft"> </td><td class="mdescRight">Auxiliary to throw CBlastExceptions. <a href="group__AlgoBlast.html#ga78cd2a705d94e1039a1636337c93a211">More...</a><br /></td></tr>
|
||
<tr class="separator:ga78cd2a705d94e1039a1636337c93a211"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaab2808cc9563dadd783694992f9263c6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structQuerySetUpOptions.html">QuerySetUpOptions</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaab2808cc9563dadd783694992f9263c6">GetQueryOpts</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gaab2808cc9563dadd783694992f9263c6"><td class="mdescLeft"> </td><td class="mdescRight">Returns <a class="el" href="structQuerySetUpOptions.html" title="Options required for setting up the query sequence.">QuerySetUpOptions</a> for eLocal objects, NULL for eRemote. <a href="group__AlgoBlast.html#gaab2808cc9563dadd783694992f9263c6">More...</a><br /></td></tr>
|
||
<tr class="separator:gaab2808cc9563dadd783694992f9263c6"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga0d2a9f3af6ff148e884f85d5034c83f9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structLookupTableOptions.html">LookupTableOptions</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga0d2a9f3af6ff148e884f85d5034c83f9">GetLutOpts</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga0d2a9f3af6ff148e884f85d5034c83f9"><td class="mdescLeft"> </td><td class="mdescRight">Returns <a class="el" href="structLookupTableOptions.html" title="Options needed to construct a lookup table Also needed: query sequence and query length.">LookupTableOptions</a> for eLocal objects, NULL for eRemote. <a href="group__AlgoBlast.html#ga0d2a9f3af6ff148e884f85d5034c83f9">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0d2a9f3af6ff148e884f85d5034c83f9"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga41a34af18f5335b80b9dfb3e18791a84"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structBlastInitialWordOptions.html">BlastInitialWordOptions</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga41a34af18f5335b80b9dfb3e18791a84">GetInitWordOpts</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga41a34af18f5335b80b9dfb3e18791a84"><td class="mdescLeft"> </td><td class="mdescRight">Returns <a class="el" href="structBlastInitialWordOptions.html" title="Options needed for initial word finding and processing.">BlastInitialWordOptions</a> for eLocal objects, NULL for eRemote. <a href="group__AlgoBlast.html#ga41a34af18f5335b80b9dfb3e18791a84">More...</a><br /></td></tr>
|
||
<tr class="separator:ga41a34af18f5335b80b9dfb3e18791a84"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga39cd1fee3a8b686486951e242b31773f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structBlastExtensionOptions.html">BlastExtensionOptions</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga39cd1fee3a8b686486951e242b31773f">GetExtnOpts</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga39cd1fee3a8b686486951e242b31773f"><td class="mdescLeft"> </td><td class="mdescRight">Returns <a class="el" href="structBlastExtensionOptions.html" title="Options used for gapped extension These include: a.">BlastExtensionOptions</a> for eLocal objects, NULL for eRemote. <a href="group__AlgoBlast.html#ga39cd1fee3a8b686486951e242b31773f">More...</a><br /></td></tr>
|
||
<tr class="separator:ga39cd1fee3a8b686486951e242b31773f"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga00e0b446463f359143cdf1be91a277ad"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structBlastHitSavingOptions.html">BlastHitSavingOptions</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga00e0b446463f359143cdf1be91a277ad">GetHitSaveOpts</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga00e0b446463f359143cdf1be91a277ad"><td class="mdescLeft"> </td><td class="mdescRight">Returns <a class="el" href="structBlastHitSavingOptions.html" title="Options used when evaluating and saving hits These include: a.">BlastHitSavingOptions</a> for eLocal objects, NULL for eRemote. <a href="group__AlgoBlast.html#ga00e0b446463f359143cdf1be91a277ad">More...</a><br /></td></tr>
|
||
<tr class="separator:ga00e0b446463f359143cdf1be91a277ad"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gac046bc57b642938aa874fa6eff0e5b38"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structPSIBlastOptions.html">PSIBlastOptions</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gac046bc57b642938aa874fa6eff0e5b38">GetPSIBlastOpts</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gac046bc57b642938aa874fa6eff0e5b38"><td class="mdescLeft"> </td><td class="mdescRight">Returns <a class="el" href="structPSIBlastOptions.html" title="Options used in protein BLAST only (PSI, PHI, RPS and translated BLAST) Some of these possibly should...">PSIBlastOptions</a> for eLocal objects, NULL for eRemote. <a href="group__AlgoBlast.html#gac046bc57b642938aa874fa6eff0e5b38">More...</a><br /></td></tr>
|
||
<tr class="separator:gac046bc57b642938aa874fa6eff0e5b38"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gabb28e06eb4c7dfb39c7bff185653556b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structBlastDatabaseOptions.html">BlastDatabaseOptions</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gabb28e06eb4c7dfb39c7bff185653556b">GetDbOpts</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gabb28e06eb4c7dfb39c7bff185653556b"><td class="mdescLeft"> </td><td class="mdescRight">Returns <a class="el" href="structBlastDatabaseOptions.html" title="Options used to create the ReadDBFILE structure Include database name and various information for res...">BlastDatabaseOptions</a> for eLocal objects, NULL for eRemote. <a href="group__AlgoBlast.html#gabb28e06eb4c7dfb39c7bff185653556b">More...</a><br /></td></tr>
|
||
<tr class="separator:gabb28e06eb4c7dfb39c7bff185653556b"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga9f7117c446b3119ce26e0c1cf5da038e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structBlastScoringOptions.html">BlastScoringOptions</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9f7117c446b3119ce26e0c1cf5da038e">GetScoringOpts</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga9f7117c446b3119ce26e0c1cf5da038e"><td class="mdescLeft"> </td><td class="mdescRight">Returns <a class="el" href="structBlastScoringOptions.html" title="Scoring options block Used to produce the BlastScoreBlk structure This structure may be needed for lo...">BlastScoringOptions</a> for eLocal objects, NULL for eRemote. <a href="group__AlgoBlast.html#ga9f7117c446b3119ce26e0c1cf5da038e">More...</a><br /></td></tr>
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||
<tr class="separator:ga9f7117c446b3119ce26e0c1cf5da038e"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga7228000f62d898396a2b63b6efab4966"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structBlastEffectiveLengthsOptions.html">BlastEffectiveLengthsOptions</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7228000f62d898396a2b63b6efab4966">GetEffLenOpts</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga7228000f62d898396a2b63b6efab4966"><td class="mdescLeft"> </td><td class="mdescRight">Returns <a class="el" href="structBlastEffectiveLengthsOptions.html" title="Options for setting up effective lengths and search spaces.">BlastEffectiveLengthsOptions</a> for eLocal objects, NULL for eRemote. <a href="group__AlgoBlast.html#ga7228000f62d898396a2b63b6efab4966">More...</a><br /></td></tr>
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||
<tr class="separator:ga7228000f62d898396a2b63b6efab4966"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga96d8f7673a6cd1c6ccbd79618a41622f"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga96d8f7673a6cd1c6ccbd79618a41622f">x_DoDeepCopy</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBlastOptions.html">CBlastOptions</a> &opts)</td></tr>
|
||
<tr class="memdesc:ga96d8f7673a6cd1c6ccbd79618a41622f"><td class="mdescLeft"> </td><td class="mdescRight">Perform a "deep copy" of Blast options. <a href="group__AlgoBlast.html#ga96d8f7673a6cd1c6ccbd79618a41622f">More...</a><br /></td></tr>
|
||
<tr class="separator:ga96d8f7673a6cd1c6ccbd79618a41622f"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
|
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Private Attributes</h2></td></tr>
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||
<tr class="memitem:a2c38d6bc3d502b3c3db0d1045e8398de"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCBlastOptionsLocal.html">CBlastOptionsLocal</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#a2c38d6bc3d502b3c3db0d1045e8398de">m_Local</a></td></tr>
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<tr class="separator:a2c38d6bc3d502b3c3db0d1045e8398de"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:aecc2b04e5dbfd47f94ef22cd90da0a8b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCBlastOptionsRemote.html">CBlastOptionsRemote</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#aecc2b04e5dbfd47f94ef22cd90da0a8b">m_Remote</a></td></tr>
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<tr class="separator:aecc2b04e5dbfd47f94ef22cd90da0a8b"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ad973180fbc099bfa02aa29c5f3723e5b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#ad973180fbc099bfa02aa29c5f3723e5b">m_ProgramName</a></td></tr>
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||
<tr class="memdesc:ad973180fbc099bfa02aa29c5f3723e5b"><td class="mdescLeft"> </td><td class="mdescRight">Program Name for Blast3. <a href="classCBlastOptions.html#ad973180fbc099bfa02aa29c5f3723e5b">More...</a><br /></td></tr>
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||
<tr class="separator:ad973180fbc099bfa02aa29c5f3723e5b"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ad729b723fa99f28e47616644c65a9486"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#ad729b723fa99f28e47616644c65a9486">m_ServiceName</a></td></tr>
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||
<tr class="memdesc:ad729b723fa99f28e47616644c65a9486"><td class="mdescLeft"> </td><td class="mdescRight">Service Name for Blast3. <a href="classCBlastOptions.html#ad729b723fa99f28e47616644c65a9486">More...</a><br /></td></tr>
|
||
<tr class="separator:ad729b723fa99f28e47616644c65a9486"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a3a78455ff397868a5d1365867bc7815d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#a3a78455ff397868a5d1365867bc7815d">m_DefaultsMode</a></td></tr>
|
||
<tr class="memdesc:a3a78455ff397868a5d1365867bc7815d"><td class="mdescLeft"> </td><td class="mdescRight">Defaults mode (remote options will ignore Set ops). <a href="classCBlastOptions.html#a3a78455ff397868a5d1365867bc7815d">More...</a><br /></td></tr>
|
||
<tr class="separator:a3a78455ff397868a5d1365867bc7815d"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a69b04eff99c9c18dbb91a9e60873930b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCAutomaticGenCodeSingleton.html">CAutomaticGenCodeSingleton</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#a69b04eff99c9c18dbb91a9e60873930b">m_GenCodeSingletonVar</a></td></tr>
|
||
<tr class="memdesc:a69b04eff99c9c18dbb91a9e60873930b"><td class="mdescLeft"> </td><td class="mdescRight">This field is add. <a href="classCBlastOptions.html#a69b04eff99c9c18dbb91a9e60873930b">More...</a><br /></td></tr>
|
||
<tr class="separator:a69b04eff99c9c18dbb91a9e60873930b"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="friends"></a>
|
||
Friends</h2></td></tr>
|
||
<tr class="memitem:a2fe81b140a37f09b6d9a2d710645842f"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#a2fe81b140a37f09b6d9a2d710645842f">CBl2Seq</a></td></tr>
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<tr class="separator:a2fe81b140a37f09b6d9a2d710645842f"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ab13a51326377d880976091fba913088e"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#ab13a51326377d880976091fba913088e">CDbBlast</a></td></tr>
|
||
<tr class="separator:ab13a51326377d880976091fba913088e"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a3e73ae80df56bb10168f2f0dbc0d1db7"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#a3e73ae80df56bb10168f2f0dbc0d1db7">CDbBlastTraceback</a></td></tr>
|
||
<tr class="separator:a3e73ae80df56bb10168f2f0dbc0d1db7"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ad2d25aaa438023d1eed65e87989ed197"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#ad2d25aaa438023d1eed65e87989ed197">CDbBlastPrelim</a></td></tr>
|
||
<tr class="separator:ad2d25aaa438023d1eed65e87989ed197"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ae377a1c4a4862e8c4c61e3df546f1e25"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#ae377a1c4a4862e8c4c61e3df546f1e25">CEffectiveSearchSpacesMemento</a></td></tr>
|
||
<tr class="separator:ae377a1c4a4862e8c4c61e3df546f1e25"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:adc51ed8f47f0bb3efc62dfc64d6ecd34"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#adc51ed8f47f0bb3efc62dfc64d6ecd34">::CBlastTabularFormatThread</a></td></tr>
|
||
<tr class="separator:adc51ed8f47f0bb3efc62dfc64d6ecd34"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a633b62bd87d3e370903206491d67b6b5"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#a633b62bd87d3e370903206491d67b6b5">::CTracebackTestFixture</a></td></tr>
|
||
<tr class="separator:a633b62bd87d3e370903206491d67b6b5"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ac1cf59a01738a2d09e18207e00969221"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#ac1cf59a01738a2d09e18207e00969221">::CBlastSetupTestFixture</a></td></tr>
|
||
<tr class="separator:ac1cf59a01738a2d09e18207e00969221"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:a66ea4a5e307aa240bc9024d5aaa8f6e5"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#a66ea4a5e307aa240bc9024d5aaa8f6e5">::CUniformSearchTest</a></td></tr>
|
||
<tr class="separator:a66ea4a5e307aa240bc9024d5aaa8f6e5"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:a3875c7933b1dd464df76c0d2f70293e6"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="classCBlastOptions.html#a3875c7933b1dd464df76c0d2f70293e6">::CTracebackSearchTestFixture</a></td></tr>
|
||
<tr class="separator:a3875c7933b1dd464df76c0d2f70293e6"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
|
||
Additional Inherited Members</h2></td></tr>
|
||
<tr class="inherit_header pub_static_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCObject')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">ThrowNullPointerException</a> (void)</td></tr>
|
||
<tr class="memdesc:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define method to throw null pointer exception. <a href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">More...</a><br /></td></tr>
|
||
<tr class="separator:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae042a181e665dd40945c1c1a7a6bc5d1">ThrowNullPointerException</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> type_info &<a class="el" href="structtype.html">type</a>)</td></tr>
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||
<tr class="separator:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga4b6f1beef2a1f37c68f7f3b1aac471d8">GetAllocFillMode</a> (void)</td></tr>
|
||
<tr class="separator:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga42eceef165a83cc081837a373ab6dd67">SetAllocFillMode</a> (<a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> <a class="el" href="mdb__load_8c.html#a1ea5d0cb93f22f7d0fdf804bd68c3326">mode</a>)</td></tr>
|
||
<tr class="separator:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">SetAllocFillMode</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="memdesc:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Set mode from configuration parameter value. <a href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">More...</a><br /></td></tr>
|
||
<tr class="separator:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pub_static_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
|
||
<tr class="memitem:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ab6ba54280c562230f65733cca0560c83">EnableDebugDump</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> on)</td></tr>
|
||
<tr class="separator:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_attribs_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_attribs_classCObject')"><img src="closed.png" alt="-"/> Static Public Attributes inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">eCounterBitsCanBeDeleted</a> = 1 << 0</td></tr>
|
||
<tr class="memdesc:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define possible object states. <a href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">eCounterBitsInPlainHeap</a> = 1 << 1</td></tr>
|
||
<tr class="memdesc:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Heap signature was found. <a href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">More...</a><br /></td></tr>
|
||
<tr class="separator:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">eCounterBitsPlaceMask</a></td></tr>
|
||
<tr class="memdesc:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mask for 'in heap' state flags. <a href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">More...</a><br /></td></tr>
|
||
<tr class="separator:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">eCounterStep</a> = 1 << 2</td></tr>
|
||
<tr class="memdesc:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Skip over the "in heap" bits. <a href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">eCounterValid</a> = <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>(1) << (sizeof(<a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>) * 8 - 2)</td></tr>
|
||
<tr class="memdesc:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Minimal value for valid objects (reference counter is zero) Must be a single bit value. <a href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">More...</a><br /></td></tr>
|
||
<tr class="separator:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">eCounterStateMask</a></td></tr>
|
||
<tr class="memdesc:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Valid object, and object in heap. <a href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">More...</a><br /></td></tr>
|
||
<tr class="separator:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pro_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classCObject')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">DeleteThis</a> (void)</td></tr>
|
||
<tr class="memdesc:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Virtual method "deleting" this object. <a href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table>
|
||
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
|
||
<div class="textblock"><p>Encapsulates ALL the BLAST algorithm's options. </p>
|
||
<p>To ensure that the default options are set properly, it is recommended that this object is not created directly by the calling code, instead, it should be obtained from calling <a class="el" href="classCBlastOptionsHandle.html" title="Handle to the options to the BLAST algorithm.">CBlastOptionsHandle</a>::[GS]etOptions(). </p><dl class="section note"><dt>Note</dt><dd>This class provides accessors and mutators for all BLAST options without preventing the caller from setting inconsistent options. </dd></dl>
|
||
<dl class="section see"><dt>See also</dt><dd><a class="el" href="blast_opts_cookbook.html">C++ BLAST Options Cookbook</a> </dd></dl>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00084">84</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
|
||
</div><h2 class="groupheader">Member Typedef Documentation</h2>
|
||
<a id="a1dcc3f6e5ae8a1e44ef4c658071bb828"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a1dcc3f6e5ae8a1e44ef4c658071bb828">◆ </a></span>TBlast4Opts</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
|
||
<td class="memname">typedef ncbi::objects::CBlast4_parameters <a class="el" href="classCBlastOptions.html#a1dcc3f6e5ae8a1e44ef4c658071bb828">CBlastOptions::TBlast4Opts</a></td>
|
||
</tr>
|
||
</table>
|
||
</div><div class="memdoc">
|
||
|
||
<p>This returns a list of parameters for remote searches. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00482">482</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
|
||
|
||
</div>
|
||
</div>
|
||
<h2 class="groupheader">Member Enumeration Documentation</h2>
|
||
<a id="a92083ed20564d2c4e2f589744ea1c8ab"></a>
|
||
<h2 class="memtitle"><span class="permalink"><a href="#a92083ed20564d2c4e2f589744ea1c8ab">◆ </a></span>EAPILocality</h2>
|
||
|
||
<div class="memitem">
|
||
<div class="memproto">
|
||
<table class="memname">
|
||
<tr>
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||
<td class="memname">enum <a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8ab">CBlastOptions::EAPILocality</a></td>
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<p>Enumerates the possible contexts in which objects of this type can be used. </p>
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<table class="fieldtable">
|
||
<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="a92083ed20564d2c4e2f589744ea1c8aba1fe87d323d4d1756e83255e6ba75c098"></a>eLocal </td><td class="fielddoc"><p>To be used for running BLAST locally. </p>
|
||
<dl class="section see"><dt>See also</dt><dd><a class="el" href="classCBl2Seq.html" title="Runs the BLAST algorithm between 2 sequences.">CBl2Seq</a>, <a class="el" href="classCLocalBlast.html" title="Class to perform a BLAST search on local BLAST databases Note that PHI-BLAST can be run using this cl...">CLocalBlast</a> </dd></dl>
|
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</td></tr>
|
||
<tr><td class="fieldname"><a id="a92083ed20564d2c4e2f589744ea1c8aba87884dabc48ea44edfb5da005c3d6bc5"></a>eRemote </td><td class="fielddoc"><p>To be used when running BLAST remotely. </p>
|
||
<dl class="section see"><dt>See also</dt><dd><a class="el" href="classCRemoteBlast.html" title="API for Remote Blast Requests.">CRemoteBlast</a> </dd></dl>
|
||
</td></tr>
|
||
<tr><td class="fieldname"><a id="a92083ed20564d2c4e2f589744ea1c8aba6ac525e31d6dac0e666ebcd2e068f42b"></a>eBoth </td><td class="fielddoc"></td></tr>
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||
<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00089">89</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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|
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<h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<a id="aa7f3c44104718cbf0a1cd2f21371bca2"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#aa7f3c44104718cbf0a1cd2f21371bca2">◆ </a></span>CBlastOptions()</h2>
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<td class="memname">CBlastOptions::CBlastOptions </td>
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<td>(</td>
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<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBlastOptions.html">CBlastOptions</a> & </td>
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||
<td class="paramname"><em>bo</em></td><td>)</td>
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<td></td>
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||
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<span class="mlabels"><span class="mlabel">private</span></span> </td>
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<p>Prohibit copy c-tor. </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<a id="a9a2021dcd26de155f0a31298d9727bab"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a9a2021dcd26de155f0a31298d9727bab">◆ </a></span>GetRemoteProgramAndService_Blast3()</h2>
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<td class="memname">virtual void CBlastOptions::GetRemoteProgramAndService_Blast3 </td>
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<td>(</td>
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<td class="paramtype"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> & </td>
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||
<td class="paramname"><em>p</em>, </td>
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||
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||
<td class="paramkey"></td>
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<td></td>
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||
<td class="paramtype"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> & </td>
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<td class="paramname"><em>s</em> </td>
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<tr>
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<td></td>
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<td>)</td>
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<td></td><td> const</td>
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<td class="mlabels-right">
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<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">virtual</span></span> </td>
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||
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<p>Get the program and service name for remote blast. </p>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00498">498</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
|
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||
<p class="reference">References <a class="el" href="test__assert__impl_8h_source.html#l00173">_ASSERT</a>, <a class="el" href="blast__options_8hpp_source.html#l00525">m_ProgramName</a>, <a class="el" href="blast__options_8hpp_source.html#l00522">m_Remote</a>, and <a class="el" href="blast__options_8hpp_source.html#l00528">m_ServiceName</a>.</p>
|
||
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||
<p class="reference">Referenced by <a class="el" href="search__strategy__unit__test_8cpp_source.html#l00507">BOOST_AUTO_TEST_CASE()</a>, <a class="el" href="remote__blast_8cpp_source.html#l00826">CRemoteBlast::x_Init()</a>, and <a class="el" href="search__strategy_8cpp_source.html#l00371">CExportStrategy::x_Process_BlastOptions()</a>.</p>
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||
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||
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<a id="a57526d5f3c22d5b16d95de4cf089afa0"></a>
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||
<h2 class="memtitle"><span class="permalink"><a href="#a57526d5f3c22d5b16d95de4cf089afa0">◆ </a></span>operator=()</h2>
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<td class="memname"><a class="el" href="classCBlastOptions.html">CBlastOptions</a>& CBlastOptions::operator= </td>
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<td>(</td>
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||
<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBlastOptions.html">CBlastOptions</a> & </td>
|
||
<td class="paramname"><em>bo</em></td><td>)</td>
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||
<td></td>
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||
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||
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||
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||
<p>Prohibit assignment operator. </p>
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||
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||
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<a id="a82654cbf415eac3a990fcabb9f3e2527"></a>
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||
<h2 class="memtitle"><span class="permalink"><a href="#a82654cbf415eac3a990fcabb9f3e2527">◆ </a></span>SetRemoteProgramAndService_Blast3()</h2>
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||
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||
<td class="memname">void CBlastOptions::SetRemoteProgramAndService_Blast3 </td>
|
||
<td>(</td>
|
||
<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> & </td>
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||
<td class="paramname"><em>p</em>, </td>
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||
<td class="paramkey"></td>
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<td></td>
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<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> & </td>
|
||
<td class="paramname"><em>s</em> </td>
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||
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<td>)</td>
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<p>Set the program and service name for remote blast. </p>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00491">491</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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||
<p class="reference">References <a class="el" href="blast__options_8hpp_source.html#l00525">m_ProgramName</a>, and <a class="el" href="blast__options_8hpp_source.html#l00528">m_ServiceName</a>.</p>
|
||
|
||
<p class="reference">Referenced by <a class="el" href="blast__nucl__options_8cpp_source.html#l00070">CBlastNucleotideOptionsHandle::SetTraditionalBlastnDefaults()</a>, <a class="el" href="blast__nucl__options_8cpp_source.html#l00115">CBlastNucleotideOptionsHandle::SetTraditionalMegablastDefaults()</a>, and <a class="el" href="blast__nucl__options_8cpp_source.html#l00093">CBlastNucleotideOptionsHandle::SetVecScreenDefaults()</a>.</p>
|
||
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||
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||
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|
||
<h2 class="groupheader">Friends And Related Function Documentation</h2>
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<a id="ac1cf59a01738a2d09e18207e00969221"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#ac1cf59a01738a2d09e18207e00969221">◆ </a></span>::CBlastSetupTestFixture</h2>
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<td class="memname">friend class ::<a class="el" href="classCBlastSetupTestFixture.html">CBlastSetupTestFixture</a></td>
|
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|
||
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|
||
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00576">576</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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||
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<a id="adc51ed8f47f0bb3efc62dfc64d6ecd34"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#adc51ed8f47f0bb3efc62dfc64d6ecd34">◆ </a></span>::CBlastTabularFormatThread</h2>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00572">572</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a3875c7933b1dd464df76c0d2f70293e6">◆ </a></span>::CTracebackSearchTestFixture</h2>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00578">578</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a633b62bd87d3e370903206491d67b6b5">◆ </a></span>::CTracebackTestFixture</h2>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00575">575</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a66ea4a5e307aa240bc9024d5aaa8f6e5">◆ </a></span>::CUniformSearchTest</h2>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00577">577</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a2fe81b140a37f09b6d9a2d710645842f">◆ </a></span>CBl2Seq</h2>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00564">564</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#ab13a51326377d880976091fba913088e">◆ </a></span>CDbBlast</h2>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00565">565</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#ad2d25aaa438023d1eed65e87989ed197">◆ </a></span>CDbBlastPrelim</h2>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00567">567</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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<a id="a3e73ae80df56bb10168f2f0dbc0d1db7"></a>
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||
<h2 class="memtitle"><span class="permalink"><a href="#a3e73ae80df56bb10168f2f0dbc0d1db7">◆ </a></span>CDbBlastTraceback</h2>
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<td class="memname">friend class CDbBlastTraceback</td>
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<td class="mlabels-right">
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<span class="mlabels"><span class="mlabel">friend</span></span> </td>
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</div><div class="memdoc">
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00566">566</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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</div>
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</div>
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<a id="ae377a1c4a4862e8c4c61e3df546f1e25"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#ae377a1c4a4862e8c4c61e3df546f1e25">◆ </a></span>CEffectiveSearchSpacesMemento</h2>
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<div class="memitem">
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<div class="memproto">
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<table class="mlabels">
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<td class="mlabels-left">
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<table class="memname">
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<tr>
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<td class="memname">friend class <a class="el" href="classCEffectiveSearchSpacesMemento.html">CEffectiveSearchSpacesMemento</a></td>
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</tr>
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||
</table>
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</td>
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<td class="mlabels-right">
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<span class="mlabels"><span class="mlabel">friend</span></span> </td>
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</tr>
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</table>
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</div><div class="memdoc">
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00568">568</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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</div>
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</div>
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<h2 class="groupheader">Member Data Documentation</h2>
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||
<a id="a3a78455ff397868a5d1365867bc7815d"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a3a78455ff397868a5d1365867bc7815d">◆ </a></span>m_DefaultsMode</h2>
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<div class="memitem">
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<div class="memproto">
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<table class="mlabels">
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<td class="mlabels-left">
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<table class="memname">
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<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CBlastOptions::m_DefaultsMode</td>
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||
</tr>
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</table>
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||
</td>
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<td class="mlabels-right">
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||
<span class="mlabels"><span class="mlabel">private</span></span> </td>
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||
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</div><div class="memdoc">
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<p>Defaults mode (remote options will ignore Set ops). </p>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00531">531</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="blast__options__cxx_8cpp_source.html#l02721">x_DoDeepCopy()</a>.</p>
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||
</div>
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</div>
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<a id="a69b04eff99c9c18dbb91a9e60873930b"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a69b04eff99c9c18dbb91a9e60873930b">◆ </a></span>m_GenCodeSingletonVar</h2>
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||
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||
<div class="memitem">
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||
<div class="memproto">
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||
<table class="mlabels">
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<td class="mlabels-left">
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<table class="memname">
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<td class="memname"><a class="el" href="classCAutomaticGenCodeSingleton.html">CAutomaticGenCodeSingleton</a> CBlastOptions::m_GenCodeSingletonVar</td>
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</tr>
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</table>
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||
</td>
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||
<td class="mlabels-right">
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<span class="mlabels"><span class="mlabel">private</span></span> </td>
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</table>
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</div><div class="memdoc">
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<p>This field is add. </p>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00562">562</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="blast__options__cxx_8cpp_source.html#l02411">SetDbGeneticCode()</a>, and <a class="el" href="blast__options__cxx_8cpp_source.html#l01478">SetQueryGeneticCode()</a>.</p>
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||
</div>
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</div>
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<a id="a2c38d6bc3d502b3c3db0d1045e8398de"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a2c38d6bc3d502b3c3db0d1045e8398de">◆ </a></span>m_Local</h2>
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||
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||
<div class="memitem">
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||
<div class="memproto">
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<table class="mlabels">
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<tr>
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<td class="mlabels-left">
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<table class="memname">
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<tr>
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<td class="memname"><a class="el" href="classCBlastOptionsLocal.html">CBlastOptionsLocal</a>* CBlastOptions::m_Local</td>
|
||
</tr>
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||
</table>
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||
</td>
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||
<td class="mlabels-right">
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<span class="mlabels"><span class="mlabel">private</span></span> </td>
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</table>
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</div><div class="memdoc">
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00521">521</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="blast__options__cxx_8cpp_source.html#l00299">CBlastOptions()</a>, <a class="el" href="blast__memento__priv_8hpp_source.html#l00112">CEffectiveSearchSpacesMemento::CEffectiveSearchSpacesMemento()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00797">CreateSnapshot()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02534">DebugDump()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01868">GetBestHitOverhang()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01887">GetBestHitScoreEdge()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01750">GetChaining()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02117">GetComplexityAdjMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01645">GetCompositionBasedStats()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01829">GetCullingLimit()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01925">GetCutoffScore()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01944">GetCutoffScoreCoeffs()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02402">GetDbGeneticCode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02332">GetDbLength()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02682">GetDbOpts()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02351">GetDbSeqNum()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02513">GetDomainInclusionThreshold()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01153">GetDustFiltering()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01172">GetDustFilteringLevel()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01210">GetDustFilteringLinker()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01191">GetDustFilteringWindow()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02370">GetEffectiveSearchSpace()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02694">GetEffLenOpts()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01906">GetEvalueThreshold()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02664">GetExtnOpts()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01034">GetFilterString()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02583">GetForceIndex()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02293">GetFrameShiftPenalty()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02274">GetGapExtensionCost()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01606">GetGapExtnAlgorithm()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02255">GetGapOpeningCost()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02075">GetGappedMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01625">GetGapTracebackAlgorithm()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01587">GetGapTrigger()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01549">GetGapXDropoff()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01568">GetGapXDropoffFinal()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01772">GetHitlistSize()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02670">GetHitSaveOpts()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02493">GetIgnoreMsaMaster()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02455">GetInclusionThreshold()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02610">GetIndexName()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02658">GetInitWordOpts()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02592">GetIsOldStyleMBIndex()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00334">GetLocality()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02055">GetLongestIntronLength()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00947">GetLookupDbFilter()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00932">GetLookupTableStride()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00895">GetLookupTableType()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02138">GetLowScorePerc()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02652">GetLutOpts()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01133">GetMaskAtHash()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02095">GetMaskLevel()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02217">GetMatchReward()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02198">GetMatrixName()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00963">GetMaxDbWordCount()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01980">GetMaxEditDistance()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01810">GetMaxHspsPerSubject()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01706">GetMaxMismatches()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01791">GetMaxNumHspPerSequence()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02601">GetMBIndexLoaded()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00982">GetMBTemplateLength()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01001">GetMBTemplateType()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02019">GetMinDiagSeparation()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02236">GetMismatchPenalty()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01728">GetMismatchWindow()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01510">GetOffDiagonalRange()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02312">GetOutOfFrameMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02155">GetPaired()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01961">GetPercentIdentity()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02423">GetPHIPattern()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00833">GetProgram()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00842">GetProgramType()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02474">GetPseudoCount()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02676">GetPSIBlastOpts()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01999">GetQueryCovHspPerc()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01470">GetQueryGeneticCode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02646">GetQueryOpts()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01411">GetReadMaxFractionAmbiguous()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01431">GetReadMinDimerEntropy()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01391">GetReadQualityFiltering()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01305">GetRepeatFiltering()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01324">GetRepeatFilteringDB()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02688">GetScoringOpts()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01229">GetSegFiltering()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01286">GetSegFilteringHicut()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01267">GetSegFilteringLocut()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01248">GetSegFilteringWindow()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01665">GetSmithWatermanMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02176">GetSpliceAlignments()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01451">GetStrandOption()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01848">GetSubjectBestHit()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02036">GetSumStatisticsMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01685">GetUnifiedP()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02574">GetUseIndex()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01367">GetWindowMaskerDatabase()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01343">GetWindowMaskerTaxId()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01491">GetWindowSize()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00914">GetWordSize()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00875">GetWordThreshold()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01529">GetXDropoff()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00808">operator==()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01876">SetBestHitOverhang()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01895">SetBestHitScoreEdge()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01760">SetChaining()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02127">SetComplexityAdjMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01654">SetCompositionBasedStats()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01837">SetCullingLimit()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01933">SetCutoffScore()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01952">SetCutoffScoreCoeffs()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02411">SetDbGeneticCode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02340">SetDbLength()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02359">SetDbSeqNum()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02522">SetDomainInclusionThreshold()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01161">SetDustFiltering()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01180">SetDustFilteringLevel()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01218">SetDustFilteringLinker()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01199">SetDustFilteringWindow()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02378">SetEffectiveSearchSpace()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01914">SetEvalueThreshold()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01042">SetFilterString()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02301">SetFrameShiftPenalty()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02282">SetGapExtensionCost()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01614">SetGapExtnAlgorithm()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02263">SetGapOpeningCost()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02083">SetGappedMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01634">SetGapTracebackAlgorithm()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01595">SetGapTrigger()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01557">SetGapXDropoff()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01576">SetGapXDropoffFinal()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01780">SetHitlistSize()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02501">SetIgnoreMsaMaster()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02463">SetInclusionThreshold()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02063">SetLongestIntronLength()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00955">SetLookupDbFilter()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00939">SetLookupTableStride()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00903">SetLookupTableType()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02147">SetLowScorePerc()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01142">SetMaskAtHash()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02105">SetMaskLevel()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02225">SetMatchReward()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02206">SetMatrixName()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00971">SetMaxDbWordCount()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01988">SetMaxEditDistance()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01818">SetMaxHspsPerSubject()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01716">SetMaxMismatches()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01799">SetMaxNumHspPerSequence()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02636">SetMBIndexLoaded()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00990">SetMBTemplateLength()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01009">SetMBTemplateType()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02027">SetMinDiagSeparation()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02244">SetMismatchPenalty()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01738">SetMismatchWindow()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01518">SetOffDiagonalRange()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02320">SetOutOfFrameMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02164">SetPaired()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01969">SetPercentIdentity()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02431">SetPHIPattern()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00851">SetProgram()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02482">SetPseudoCount()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02007">SetQueryCovHspPerc()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01478">SetQueryGeneticCode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01421">SetReadMaxFractionAmbiguous()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01441">SetReadMinDimerEntropy()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01401">SetReadQualityFiltering()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01313">SetRepeatFiltering()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01332">SetRepeatFilteringDB()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01237">SetSegFiltering()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01294">SetSegFilteringHicut()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01275">SetSegFilteringLocut()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01256">SetSegFilteringWindow()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01674">SetSmithWatermanMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02185">SetSpliceAlignments()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01459">SetStrandOption()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01856">SetSubjectBestHit()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02044">SetSumStatisticsMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01695">SetUnifiedP()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02619">SetUseIndex()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01376">SetWindowMaskerDatabase()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01352">SetWindowMaskerTaxId()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01499">SetWindowSize()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00922">SetWordSize()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00884">SetWordThreshold()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01537">SetXDropoff()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00825">Validate()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02721">x_DoDeepCopy()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00315">~CBlastOptions()</a>, and <a class="el" href="blast__memento__priv_8hpp_source.html#l00132">CEffectiveSearchSpacesMemento::~CEffectiveSearchSpacesMemento()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#ad973180fbc099bfa02aa29c5f3723e5b">◆ </a></span>m_ProgramName</h2>
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<td class="memname"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> CBlastOptions::m_ProgramName</td>
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<span class="mlabels"><span class="mlabel">private</span></span> </td>
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<p>Program Name for Blast3. </p>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00525">525</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="blast__options_8hpp_source.html#l00498">GetRemoteProgramAndService_Blast3()</a>, <a class="el" href="blast__options_8hpp_source.html#l00491">SetRemoteProgramAndService_Blast3()</a>, and <a class="el" href="blast__options__cxx_8cpp_source.html#l02721">x_DoDeepCopy()</a>.</p>
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<a id="aecc2b04e5dbfd47f94ef22cd90da0a8b"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#aecc2b04e5dbfd47f94ef22cd90da0a8b">◆ </a></span>m_Remote</h2>
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<td class="memname"><a class="el" href="classCBlastOptionsRemote.html">CBlastOptionsRemote</a>* CBlastOptions::m_Remote</td>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00522">522</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="blast__options__cxx_8cpp_source.html#l00299">CBlastOptions()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02542">DoneDefaults()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02563">GetBlast4AlgoOpts()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02712">GetDefaultsMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00334">GetLocality()</a>, <a class="el" href="blast__options_8hpp_source.html#l00498">GetRemoteProgramAndService_Blast3()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01876">SetBestHitOverhang()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01895">SetBestHitScoreEdge()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02127">SetComplexityAdjMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01654">SetCompositionBasedStats()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01837">SetCullingLimit()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01933">SetCutoffScore()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02411">SetDbGeneticCode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02340">SetDbLength()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02359">SetDbSeqNum()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02705">SetDefaultsMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02522">SetDomainInclusionThreshold()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01161">SetDustFiltering()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01180">SetDustFilteringLevel()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01218">SetDustFilteringLinker()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01199">SetDustFilteringWindow()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02378">SetEffectiveSearchSpace()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01914">SetEvalueThreshold()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01042">SetFilterString()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02301">SetFrameShiftPenalty()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02282">SetGapExtensionCost()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01614">SetGapExtnAlgorithm()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02263">SetGapOpeningCost()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02083">SetGappedMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01634">SetGapTracebackAlgorithm()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01595">SetGapTrigger()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01557">SetGapXDropoff()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01576">SetGapXDropoffFinal()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01780">SetHitlistSize()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02501">SetIgnoreMsaMaster()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02463">SetInclusionThreshold()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02063">SetLongestIntronLength()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00903">SetLookupTableType()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01142">SetMaskAtHash()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02105">SetMaskLevel()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02225">SetMatchReward()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02206">SetMatrixName()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01988">SetMaxEditDistance()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01818">SetMaxHspsPerSubject()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01799">SetMaxNumHspPerSequence()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00990">SetMBTemplateLength()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01009">SetMBTemplateType()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02244">SetMismatchPenalty()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02320">SetOutOfFrameMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01969">SetPercentIdentity()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02431">SetPHIPattern()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00851">SetProgram()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02482">SetPseudoCount()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02007">SetQueryCovHspPerc()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01478">SetQueryGeneticCode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01313">SetRepeatFiltering()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01332">SetRepeatFilteringDB()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01237">SetSegFiltering()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01294">SetSegFilteringHicut()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01275">SetSegFilteringLocut()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01256">SetSegFilteringWindow()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01674">SetSmithWatermanMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01459">SetStrandOption()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01856">SetSubjectBestHit()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02044">SetSumStatisticsMode()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01695">SetUnifiedP()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02619">SetUseIndex()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01376">SetWindowMaskerDatabase()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01352">SetWindowMaskerTaxId()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01499">SetWindowSize()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00922">SetWordSize()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l00884">SetWordThreshold()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l01537">SetXDropoff()</a>, <a class="el" href="blast__options__cxx_8cpp_source.html#l02721">x_DoDeepCopy()</a>, and <a class="el" href="blast__options__cxx_8cpp_source.html#l00315">~CBlastOptions()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#ad729b723fa99f28e47616644c65a9486">◆ </a></span>m_ServiceName</h2>
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<td class="memname"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> CBlastOptions::m_ServiceName</td>
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<p>Service Name for Blast3. </p>
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<p class="definition">Definition at line <a class="el" href="blast__options_8hpp_source.html#l00528">528</a> of file <a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a>.</p>
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<p class="reference">Referenced by <a class="el" href="blast__options_8hpp_source.html#l00498">GetRemoteProgramAndService_Blast3()</a>, <a class="el" href="blast__options_8hpp_source.html#l00491">SetRemoteProgramAndService_Blast3()</a>, and <a class="el" href="blast__options__cxx_8cpp_source.html#l02721">x_DoDeepCopy()</a>.</p>
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<hr/>The documentation for this class was generated from the following files:<ul>
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<li>include/algo/blast/api/<a class="el" href="blast__options_8hpp_source.html">blast_options.hpp</a></li>
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<li>src/algo/blast/api/<a class="el" href="blast__options__cxx_8cpp_source.html">blast_options_cxx.cpp</a></li>
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Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.0
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</small></address>
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<address style="align: right;"><small>Modified on Fri Sep 20 14:57:55 2024 by modify_doxy.py rev. 669887</small></address>
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