93 lines
54 KiB
HTML
93 lines
54 KiB
HTML
<!DOCTYPE html>
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/*# sourceURL=/css/ampshared.css*/</style><meta property="og:locale" content="en_US"><meta property="og:type" content="article"><meta property="og:title" content="Try Out a Development Version of NCBI’s Publicly Available Annotation Tool, EGAPx - NCBI Insights"><meta property="og:description" content="Latest release now available Are you generating genomes for vertebrates, arthropods, or plants, and looking for a way to generate high-quality genome annotation? NCBI is working on a public version of the NCBI Eukaryotic Genome Annotation Pipeline (EGAPx), and the latest developmental release is now available for testing and feedback. What’s new? Improved Gene Annotation: … Continue reading Try Out a Development Version of NCBI’s Publicly Available Annotation Tool, EGAPx →"><meta property="og:url" content="https://ncbiinsights.ncbi.nlm.nih.gov/2024/11/20/development-version-egapx/"><meta property="og:site_name" content="NCBI Insights"><meta property="article:publisher" content="https://www.facebook.com/ncbi.nlm"><meta property="article:published_time" content="2024-11-20T14:45:49+00:00"><meta property="og:image" content="https://ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2024/11/EGAPx_Release-e1731950009661.png"><meta property="og:image:width" content="1100"><meta property="og:image:height" content="575"><meta property="og:image:type" content="image/png"><meta name="author" content="NCBI Staff"><meta name="twitter:card" content="summary_large_image"><meta name="twitter:creator" content="@NCBI"><meta name="twitter:site" content="@NCBI"><meta name="twitter:label1" content="Written by"><meta name="twitter:data1" 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<h1 class="amp-wp-title">Try Out a Development Version of NCBI’s Publicly Available Annotation Tool, EGAPx</h1>
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<time datetime="2024-11-20T14:45:49+00:00">
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4 months ago </time>
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<amp-img width="1024" height="535" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2024/11/EGAPx_Release-e1731950009661.png?fit=1024%2C535&ssl=1" class="attachment-large size-large wp-post-image amp-wp-enforced-sizes i-amphtml-layout-intrinsic i-amphtml-layout-size-defined" alt="Lines of ATGC in the background. Text in banner says: EGAPx NCBI's publicly available annotation tool. Latest release now available." data-hero-candidate="" layout="intrinsic" data-hero i-amphtml-ssr i-amphtml-layout="intrinsic"><i-amphtml-sizer slot="i-amphtml-svc" class="i-amphtml-sizer"><img alt="" aria-hidden="true" class="i-amphtml-intrinsic-sizer" role="presentation" src="data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjUzNSIgd2lkdGg9IjEwMjQiIHhtbG5zPSJodHRwOi8vd3d3LnczLm9yZy8yMDAwL3N2ZyIgdmVyc2lvbj0iMS4xIi8+"></i-amphtml-sizer><img class="i-amphtml-fill-content i-amphtml-replaced-content" decoding="async" loading="lazy" alt="Lines of ATGC in the background. Text in banner says: EGAPx NCBI's publicly available annotation tool. Latest release now available." src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2024/11/EGAPx_Release-e1731950009661.png?fit=1024%2C535&ssl=1"></amp-img> </figure>
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<h3><i><span data-contrast="none">Latest release now available</span></i><span data-ccp-props='{"134233117":true,"134233118":true,"201341983":0,"335559740":240}'> </span></h3>
|
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<p><span data-contrast="auto">Are you generating genomes for vertebrates, arthropods, or plants, and looking for a way to generate high-quality genome annotation? NCBI is working on a public version of the <a href="https://www.ncbi.nlm.nih.gov/refseq/annotation_euk/process/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=egapx-development-20241120">NCBI Eukaryotic Genome Annotation Pipeline</a> (EGAPx), and the latest developmental release is now available for testing and feedback. </span></p>
|
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<h5><b><span data-contrast="auto">What’s new?</span></b><span data-ccp-props='{"201341983":0,"335557856":16777215,"335559738":150,"335559739":0,"335559740":240}'> </span></h5>
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<ul>
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<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"multilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><b>Improved Gene Annotation</b>: Classifies and names genes using orthology and well-supported proteins. </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"multilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><b>Automated Setup</b>: Supply the species and RNA-seq data, and the process will automatically configure with the proper parameters and input data. </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"multilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><b>Expanded Species and Data Integration</b>: Broader support for plant and vertebrate species with better integration of functional and structural data outputs. </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="2" data-list-defn-props='{"335552541":1,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"multilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><b>Performance and Usability Enhancements</b>: Faster processing, better error handling, and improved support for large genomic sequences. </span></li>
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</ul>
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<h5><b><span data-contrast="auto">Available on GitHub</span></b><span data-ccp-props='{"134233117":true,"134233118":true,"201341983":0,"335557856":16777215,"335559740":240}'> </span></h5>
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||
<p><span data-contrast="auto">EGAPx is available on </span><a href="https://github.com/ncbi/egapx"><span data-contrast="none">GitHub</span></a><span data-contrast="auto">. We want to hear from you! Please open issues in GitHub for any problems you may encounter. If you’d like to be an early tester as we refine the output and workflow for submitting EGAPx annotation to GenBank, please contact us at </span><a href="mailto:cgr@nlm.nih.gov"><span data-contrast="none">cgr@nlm.nih.gov</span></a><span data-contrast="auto">. </span><span data-ccp-props='{"201341983":0,"335557856":16777215,"335559738":150,"335559739":0,"335559740":240}'> </span></p>
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<h5><b><span data-contrast="none">Stay up to date </span></b><span data-ccp-props='{"201341983":0,"335557856":16777215,"335559738":150,"335559739":0,"335559740":240}'> </span></h5>
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||
<p><span data-contrast="none">EGAPx is part of the </span><a href="https://www.ncbi.nlm.nih.gov/datasets/cgr?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=egapx-development-20241120"><span data-contrast="none">NIH Comparative Genomics Resource (CGR)</span></a><span data-contrast="none">. CGR facilitates reliable comparative genomics analyses for all eukaryotic organisms through an NCBI Toolkit and community collaboration. </span><span data-ccp-props='{"134233117":true,"134233118":true,"201341983":0,"335557856":16777215,"335559740":240}'> </span></p>
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||
<p><a href="https://public.govdelivery.com/accounts/USNLMOCPL/subscriber/new?topic_id=USNLMOCPL_50%22"><span data-contrast="none">Join our mailing list</span></a><span data-contrast="none"> to keep up to date with EGAPx and other CGR news. </span><span data-ccp-props='{"134233117":true,"134233118":true,"201341983":0,"335557856":16777215,"335559740":240}'> </span></p>
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<h5><b><span data-contrast="none">Questions?</span></b><span data-ccp-props='{"134233117":true,"134233118":true,"201341983":0,"335557856":16777215,"335559740":240}'> </span></h5>
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<p><span data-contrast="none">If you have questions or would like to provide feedback, please reach out to us at </span><a href="mailto:info@ncbi.nlm.nih.gov"><span data-contrast="none">info@ncbi.nlm.nih.gov</span></a><span data-contrast="none">. </span><span data-ccp-props="{}"> </span></p>
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