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/*# sourceURL=/css/ampshared.css*/</style><meta property="og:locale" content="en_US"><meta property="og:type" content="article"><meta property="og:title" content="Access and Download Sequence Data and Metadata Using NCBI Datasets - NCBI Insights"><meta property="og:description" content="Goodbye Assembly and Genome, hello NCBI Datasets! Exciting news! NCBI has streamlined and modernized how you access and download genome, taxonomy, and gene information with NCBI Datasets. As previously announced, NCBI Datasets is replacing the legacy Genome and Assembly resources providing you a single entry point to genome datasets. Effective today, the legacy pages are … Continue reading Access and Download Sequence Data and Metadata Using NCBI Datasets →"><meta property="og:url" content="https://ncbiinsights.ncbi.nlm.nih.gov/2024/08/13/access-download-sequence-data-metadata-ncbi-datasets/"><meta property="og:site_name" content="NCBI Insights"><meta property="article:publisher" content="https://www.facebook.com/ncbi.nlm"><meta property="article:published_time" content="2024-08-13T13:01:14+00:00"><meta property="og:image" content="https://ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2024/08/NCBI_Datasets-1-e1723061667686.png"><meta property="og:image:width" content="1100"><meta property="og:image:height" content="575"><meta property="og:image:type" content="image/png"><meta name="author" content="NCBI Staff"><meta name="twitter:card" content="summary_large_image"><meta name="twitter:creator" content="@NCBI"><meta name="twitter:site" content="@NCBI"><meta name="twitter:label1" content="Written by"><meta 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<h1 class="amp-wp-title">Access and Download Sequence Data and Metadata Using NCBI Datasets</h1>
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<amp-img width="1024" height="535" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2024/08/NCBI_Datasets-1-e1723061667686.png?fit=1024%2C535&amp;ssl=1" class="attachment-large size-large wp-post-image amp-wp-enforced-sizes i-amphtml-layout-intrinsic i-amphtml-layout-size-defined" alt="Laptop and tablet screens showing the NCBI Datasets webpage. Text says: NCBI Datasets One-stop shop for genome, taxonomy, and gene information" data-hero-candidate="" layout="intrinsic" data-hero i-amphtml-ssr i-amphtml-layout="intrinsic"><i-amphtml-sizer slot="i-amphtml-svc" class="i-amphtml-sizer"><img alt="" aria-hidden="true" class="i-amphtml-intrinsic-sizer" role="presentation" src="data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjUzNSIgd2lkdGg9IjEwMjQiIHhtbG5zPSJodHRwOi8vd3d3LnczLm9yZy8yMDAwL3N2ZyIgdmVyc2lvbj0iMS4xIi8+"></i-amphtml-sizer><img class="i-amphtml-fill-content i-amphtml-replaced-content" decoding="async" loading="lazy" alt="Laptop and tablet screens showing the NCBI Datasets webpage. Text says: NCBI Datasets One-stop shop for genome, taxonomy, and gene information" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2024/08/NCBI_Datasets-1-e1723061667686.png?fit=1024%2C535&amp;ssl=1"></amp-img> </figure>
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<h3><em>Goodbye Assembly and Genome, hello NCBI Datasets!</em></h3>
<p>Exciting news! NCBI has streamlined and modernized how you access and download genome, taxonomy, and gene information with <a href="https://www.ncbi.nlm.nih.gov/datasets?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_term=datasets-+hello-goodbye-20240813">NCBI Datasets</a>. As <a href="https://ncbiinsights.ncbi.nlm.nih.gov/2023/07/11/ncbi-datasets-genome-assembly-pages/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_term=datasets-+hello-goodbye-20240813">previously announced</a>, NCBI Datasets is replacing the legacy Genome and Assembly resources providing you a single entry point to genome datasets. Effective today, the legacy pages are retired and no longer available.</p>
<p>Please note there will be no changes to how you programmatically access the databases using <a href="https://www.ncbi.nlm.nih.gov/books/NBK25501/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_term=datasets-+hello-goodbye-20240813">E-Utilities</a> or <a href="https://www.ncbi.nlm.nih.gov/books/NBK179288/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_term=datasets-+hello-goodbye-20240813">EDirect</a>. </p>
<h5>Features &amp; Benefits of NCBI Datasets</h5>
<ol>
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><strong>Comprehensive Data</strong>: Access assembled genome sequences, annotations, and metadata, including transcripts and proteins from a single webpage</span></li>
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><strong>Tabular Displays</strong>: Easy and intuitive filtering and download options (no need to understand complex Entrez queries).</span></li>
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><strong>Smart Searching</strong>: Easily retrieve data using organism names, assembly, WGS, or BioProject accessions.</span></li>
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><strong>Robust Support for Searching by Taxon Name</strong>: e.g., Salmonella, Mammals, Mus musculus — this is the best way to start your search!</span></li>
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><strong>Scalable</strong><strong> Data Retrieval</strong>: Request data for multiple genomes and file types in a single request, simplifying and expediting the download of large datasets.</span></li>
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><strong>Well-Documented Metadata</strong>: Metadata is sourced from multiple databases, and metadata schemas are thoroughly documented.</span></li>
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><strong>Interoperable metadata formats</strong>: Metadata formats are machine-readable and easily converted to human-readable forms.</span></li>
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f"><strong>Taxonomy-Focused Portal</strong>: Access genes, genomes, and other NCBI resources through a taxonomy-focused portal.</span></li>
</ol>
<h5>Stay up to date</h5>
<p>NCBI Datasets is part of the <a href="https://www.ncbi.nlm.nih.gov/comparative-genomics-resource?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_term=datasets-+hello-goodbye-20240813">NIH Comparative Genomics Resource (CGR). </a>CGR facilitates reliable comparative genomics analysesfor all eukaryotic organisms through an NCBI Toolkit and community collaboration.</p>
<p><a href="https://public.govdelivery.com/accounts/USNLMOCPL/subscriber/new?topic_id=USNLMOCPL_50%22">Join our mailing list</a> to keep up to date with NCBI Datasets and other CGR news.</p>
<h5>We want to hear from you!</h5>
<p>We are very excited about these enhancements and welcome your feedback as we continue to improve and transition to our new record pages! Feel free toemail usat <a href="info@ncbi.nlm.nih.gov">info@ncbi.nlm.nih.gov</a> with questions or feedback.</p>
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