237 lines
14 KiB
HTML
237 lines
14 KiB
HTML
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
|
<html xmlns="http://www.w3.org/1999/xhtml" lang="en">
|
|
<head>
|
|
<meta http-equiv="X-UA-Compatible" content="IE=8;" />
|
|
<meta name="twitter:card" content="summary_large_image">
|
|
<meta name="twitter:site" content="@NLM_NIH">
|
|
<meta name="twitter:title" content="NLM Launches MAGPIE Web Tool. NLM Technical Bulletin. 2019 May–Jun">
|
|
<meta name="twitter:description" content=" The NLM Technical Bulletin is your source to stay informed about NLM products and services.">
|
|
<meta name="twitter:image" content="https://www.nlm.nih.gov/pubs/techbull/images/nlm_tech_bulletin_graphic_twitter.jpg">
|
|
<meta property="og:url" content="https://www.nlm.nih.gov/pubs/techbull/tb.html" />
|
|
<meta property="og:type" content="article" />
|
|
<meta property="og:title" content="NLM Launches MAGPIE Web Tool. NLM Technical Bulletin. 2019 May–Jun" />
|
|
<meta property="og:description" content="The NLM Technical Bulletin is your source to stay informed about NLM products and services." />
|
|
<meta property="og:image" content="https://www.nlm.nih.gov/pubs/techbull/images/nlm_tech_bulletin_graphic_facebook.jpg" />
|
|
<link type="text/css" href="/pubs/techbull/styles/reset.css" rel="stylesheet" />
|
|
|
|
<link type="text/css" href="/pubs/techbull/styles/technicalBulletin.css" rel="stylesheet" />
|
|
<!--Call jQuery-->
|
|
<script src="//assets.nlm.nih.gov/jquery/jquery-latest.min.js"></script>
|
|
<script src="//assets.nlm.nih.gov/jquery/jquery-migrate-latest.min.js"></script>
|
|
<script src="/pubs/techbull/scripts/techbull.js" type="text/javascript" language="javascript"></script>
|
|
<!--[if lte IE 8]>
|
|
<script type="text/javascript" src="/scripts/PIE.js"></script>
|
|
<![endif]-->
|
|
<link type="text/css" href="/pubs/techbull/styles/print.css" rel="stylesheet" media="print"/>
|
|
<title>NLM Launches MAGPIE Web Tool. NLM Technical Bulletin. 2019 May–Jun</title>
|
|
<link rel="schema.DC" href="http://purl.org/dc/elements/1.1/" title="The Dublin Core metadata Element Set" />
|
|
<meta name="DC.Title" content="NLM Launches MAGPIE Web Tool" />
|
|
|
|
<meta name="DC.Publisher" content="U.S. National Library of Medicine" />
|
|
<meta name="DC.Date.Issued" content="2019-05-17" />
|
|
<meta name="DC.Date.Modified" content="2019-05-28" />
|
|
<meta name="NLMDC.Date.LastReviewed" content="2019-05-28" />
|
|
<meta name="NLM.Contact.Email" content="nlmtechbull@mail.nlm.nih.gov" />
|
|
<meta name="DC.Type" content="Newsletters" />
|
|
<meta name="NLM.Permanence.Level" content="Permanent: Stable Content" />
|
|
<meta name="DC.Rights" content="Public Domain" />
|
|
<meta name="DC.Language" content="eng" />
|
|
|
|
|
|
<meta name="DC.Subject.Keyword" content="Systematized Nomenclature of Medicine Clinical Terms" />
|
|
<meta name="DC.Subject.Keyword" content="MAGPIE" />
|
|
<!-- Google Tag Manager -->
|
|
<script>(function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start': new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='//www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-MT6MLL');</script>
|
|
<!-- End Google Tag Manager -->
|
|
</head>
|
|
<body>
|
|
<!-- Google Tag Manager -->
|
|
<noscript><iframe src="//www.googletagmanager.com/ns.html?id=GTM-MT6MLL" height="0" width="0" style="display:none;visibility:hidden" title="googletagmanager"></iframe></noscript>
|
|
<!-- End Google Tag Manager -->
|
|
<div class="skipnavigation"><a title="Skip the navigation on this page" href="#skipnav" class="skipnavigation">Skip Navigation Bar</a></div>
|
|
|
|
<div>
|
|
|
|
<div class="header">
|
|
<img src="/pubs/techbull/images/tb_logo_113.jpg" alt="National Library of Medicine Technical Bulletin" title="National Library of Medicine Technical Bulletin" /><img src="/pubs/techbull/images/nlm_masthead_113.jpg" alt="National Library of Medicine Technical Bulletin" title="National Library of Medicine Technical Bulletin" usemap="#nlm_masthead_113" />
|
|
</div>
|
|
|
|
<div class="search_box">
|
|
<form method="get" action="//vsearch.nlm.nih.gov/vivisimo/cgi-bin/query-meta" target="_self" name="searchForm" class="searchForm">
|
|
<label class="displaynone" for="search">Search</label>
|
|
<input name="query" id="search" type="text" class="search-input inactive" size="50" onfocus="this.value=''" value="Search here for NLM Technical Bulletin articles" aria-label="Search NLM Technical Bulletin">
|
|
<input type="hidden" name="v:project" value="technical-bulletin">
|
|
</form>
|
|
</div>
|
|
|
|
</div>
|
|
|
|
<div id="nav">
|
|
<!--Open drop-->
|
|
<ul class="topnav">
|
|
<li class="currentissue"><a href="//www.nlm.nih.gov/pubs/techbull/current_issue.html">Current Issue</a> <img class="separator" src="/pubs/techbull/images/whitelinetransparentbackground.gif " alt=""/></li>
|
|
<li class="archive"><a href="//www.nlm.nih.gov/pubs/techbull/back_issues.html">Previous Issues</a> <img class="separator" src="/pubs/techbull/images/whitelinetransparentbackground.gif " alt=""/></li>
|
|
<li class="about"><a href="//www.nlm.nih.gov/pubs/techbull/about.html">About</a> <img class="separator" src="/pubs/techbull/images/whitelinetransparentbackground.gif " alt=""/></li>
|
|
<li class="staycurrent"><a href="//www.nlm.nih.gov/pubs/techbull/stay_current.html">Stay Current <img class="emaillogo" src="/pubs/techbull/images/email_20px.gif" alt="E-Mail Sign Up" style="margin-top: -4px;"/> <img class="rsslogo" src="/pubs/techbull/images/rss_20px.gif" alt="RSS Feed" style="margin-top: -4px;"/></a></li>
|
|
</ul>
|
|
<!--Close drop-->
|
|
</div>
|
|
<div class="body">
|
|
<a id="skipnav" name="skipnav"></a>
|
|
<div class="syndicate">
|
|
<p class="tableOfContents"><strong>Table of Contents: <a href="/pubs/techbull/mj19/mj19_issue_cover.html">2019 MAY–JUNE No. 428</a></strong></p>
|
|
<p class="prevnext"><span class="buttons">
|
|
<span class="previous"><a href="mj19_mla_ppt.html">Previous</a></span> <span class="next"><a href="mj19_medline_publisher_portal.html">Next</a></span>
|
|
|
|
</span></p>
|
|
<hr class="hr1" />
|
|
<h1 class="articleH1">NLM Launches MAGPIE Web Tool</h1>
|
|
<p class="tbyearmonth">Fung K.-W. NLM Launches MAGPIE Web Tool. NLM Tech Bull. 2019 May-Jun;(428):e3.</p>
|
|
<div class="articleactions">2019 May 28 <span class="status">[posted]</span>
|
|
|
|
|
|
|
|
</div>
|
|
<div class="articleParagraph">
|
|
|
|
|
|
<p>On May 28, 2019, the National Library of Medicine (NLM) launched the new web tool <a href="https://magpie.nlm.nih.gov/"><strong>MAGPIE (Map Assisted Generation of Procedure and Intervention Encoding)</strong></a>. MAGPIE is an interactive tool to help users (e.g., professional coders, researchers, clinicians) find <a href="https://www.nlm.nih.gov/healthit/snomedct/">SNOMED CT</a> and <a href="https://www.cms.gov/Medicare/Coding/ICD10/2019-ICD-10-PCS.html">ICD-10-PCS</a> codes for medical procedures and interventions. MAGPIE is an NLM research tool and is developed primarily for the 2018 version of ICD-10-PCS.</p>
|
|
|
|
<p>SNOMED CT is the designated clinical terminology in the U.S. for clinical problems and procedures in the electronic health record. The SNOMED CT United States (US) Edition is the official source of SNOMED CT for use in U.S. healthcare systems and can be accessed <a href="https://www.nlm.nih.gov/healthit/snomedct/us_edition.html">here</a>. ICD-10-PCS is required under the <a href="https://www.hhs.gov/hipaa/index.html">Health Insurance Portability and Accountability Act (HIPAA)</a> for procedures and interventions in hospital inpatient health settings.</p>
|
|
|
|
<p>In addition to the ICD-10-PCS coding resources (i.e., index, tables and definitions), MAGPIE also uses the <a href="https://www.nlm.nih.gov/research/umls/">Unified Medical Language System (UMLS)</a>, the General Equivalence Maps (GEM) from ICD-9-CM to ICD-10-PCS, and the ICD-9-CM Procedures index (re-purposed for ICD-10-PCS coding) to facilitate code searching. MAGPIE combines lexical and map-assisted searching strategies to look for SNOMED CT, ICD-9-CM, and ICD-10-PCS codes sequentially. Lexical matching makes use of the rich index terms in the re-purposed ICD-9-CM procedure index, synonyms in the UMLS, and the ICD-10-PCS index. Map-assisted searching relies on inter-terminology mappings from the GEM and UMLS.</p>
|
|
|
|
<p>MAGPIE <a href="https://magpie.nlm.nih.gov/demo#?tab=instructions">search sequence and search methods</a> (see <a href="#fig1">Figure 1</a>):</p>
|
|
|
|
<p>
|
|
<ul>
|
|
<li>MAGPIE first finds the best matching SNOMED CT and ICD-9-CM codes, and suggests a list of ICD-10-PCS tables based on these codes and their mappings. Users can refine the search by changing the SNOMED CT and ICD-9-CM codes.</li>
|
|
<li>Next, users pick the ICD-10-PCS table to display, which will open to pre-selected codes suggested by GEM and filtered by keywords from the search phrase (e.g., open, laparoscopic, left, right).</li>
|
|
<li>Users then pick the ICD-10-PCS codes from the table.</li>
|
|
<li>If a combination of codes is suggested by GEM, users will be shown the additional clusters of codes that may be relevant. Where appropriate, MAGPIE will prompt users for refinement of the SNOMED CT code based on the chosen ICD-10-PCS codes.</li>
|
|
</ul>
|
|
</p>
|
|
|
|
<a name="fig1"></a>
|
|
<div class="figure"><br />
|
|
<img src="/pubs/techbull/mj19/graphics/magpie_web_tool_launch_fig1.png" alt="diagram of overall schema of MAGPIE search sequence and search methods." title="Overall schema of MAGPIE search sequence and search methods." /><br />
|
|
<strong>Figure 1: Overall schema of MAGPIE search sequence and search methods.</strong></div>
|
|
|
|
<p><strong>Example of MAGPIE Search Sequence and Search Methods</strong></p>
|
|
|
|
<p>
|
|
<ol>
|
|
<li>Type in "cesarean section" (see <i>Step 1</i> in <a href="#fig2">Figure 2</a>).
|
|
<li>SNOMED CT and ICD-9-CM codes are suggested by default and these codes can be changed if necessary (see <i>Step 2</i> and <i>Step 3</i> in <a href="#fig2">Figure 2</a>).</li>
|
|
</p>
|
|
|
|
<a name="fig2"></a>
|
|
<div class="figure"><br />
|
|
<img src="/pubs/techbull/mj19/graphics/magpie_web_tool_launch_fig2.png" alt="screenshot of MAGPIE search steps 1-3." title="MAGPIE search steps 1-3: Map Assisted Generation of Procedure and Intervention Encoding." /><br />
|
|
<strong>Figure 2: MAGPIE search steps 1-3: Map Assisted Generation of Procedure and Intervention Encoding.</strong></div>
|
|
|
|
<p>
|
|
<li>Candidate ICD-10-PCS tables are displayed. ICD-10-PCS codes are pre-populated and filtered in the table view. Highlights prompt users to narrow down selections (see <a href="#fig3">Figure 3</a>).</li>
|
|
</p>
|
|
|
|
<a name="fig3"></a>
|
|
<div class="figure"><br />
|
|
<img src="/pubs/techbull/mj19/graphics/magpie_web_tool_launch_fig3.png" alt="screenshot of MAGPIE search steps 4-5." title="MAGPIE search steps 4-5: Candidate PCS Tables." /><br />
|
|
<strong>Figure 3: MAGPIE search steps 4-5: Candidate PCS Tables.</strong></div>
|
|
|
|
<p>
|
|
<li>Where appropriate, user is prompted to refine SNOMED CT code based on ICD-10-PCS codes selected (see <a href="#fig4">Figure 4</a>).</li>
|
|
</p>
|
|
|
|
<a name="fig4"></a>
|
|
<div class="figure"><br />
|
|
<img src="/pubs/techbull/mj19/graphics/magpie_web_tool_launch_fig4.png" alt="screenshot of MAGPIE search steps 6-7." title="MAGPIE search steps 6-7: SNOMED CT Refinement prompt." /><br />
|
|
<strong>Figure 4: MAGPIE search steps 6-7: PCS Procedures and SNOMED CT Refinement prompt.</strong></div>
|
|
|
|
<p>
|
|
<li>Final SNOMED CT and ICD-10-PCS codes are displayed in Results panel (see <a href="#fig5">Figure 5</a>).</li>
|
|
</ol>
|
|
</p>
|
|
|
|
<a name="fig5"></a>
|
|
<div class="figure"><br />
|
|
<img src="/pubs/techbull/mj19/graphics/magpie_web_tool_launch_fig5.png" alt="alt tag goes here." title="Results panel for MAGPIE report." /><br />
|
|
<strong>Figure 5: Results panel for MAGPIE report.</strong></div>
|
|
|
|
<p>MAGPIE is developed in collaboration with the SNOMED CT to ICD-10-PCS Mapping Project Group under <a href="https://www.snomed.org/">SNOMED International</a>. MAGPIE is made available as an NLM research tool and has not been tested in any real life production environment. We welcome <a href="https://support.nlm.nih.gov/?category=lister_hill&from=null">feedback</a> on its usability and suggestions for improvement. Any future development will depend on the level of public interest and availability of resources.</p>
|
|
</div>
|
|
<p class="articleParagraph">
|
|
|
|
|
|
|
|
By
|
|
|
|
|
|
Kin-Wah Fung<br />
|
|
Lister Hill National Center for Biomedical Communications<br />
|
|
|
|
|
|
|
|
|
|
</p>
|
|
</div>
|
|
<div class="footer">
|
|
<p class="footerLeft"><span class="footerissn"><strong>ISSN 2161-2986 (Online)</strong> Content not copyrighted; freely reproducible.</span><br/>
|
|
<a href="/">National Library of Medicine</a> 8600 Rockville Pike, Bethesda, MD 20894
|
|
<br/>
|
|
<a href="//www.nlm.nih.gov/socialmedia/index.html">Connect with NLM</a>,
|
|
<a href="//www.nlm.nih.gov/web_policies.html">Web Policies</a>,
|
|
<a href="//www.nlm.nih.gov/careers/jobopenings.html">Careers</a>,
|
|
<a href="//www.nlm.nih.gov/accessibility.html">Accessibility</a>,
|
|
<a href="//www.usa.gov/" id="anch_34">USA.gov</a>,
|
|
<a href="//www.hhs.gov/vulnerability-disclosure-policy/index.html">HHS Vulnerability Disclosure</a>
|
|
<br/>
|
|
|
|
<a href="//www.nih.gov/">NIH</a>,
|
|
<a href="https://www.hhs.gov/">HHS</a>,
|
|
<a href="//www.nih.gov/institutes-nih/nih-office-director/office-communications-public-liaison/freedom-information-act-office">FOIA</a>,
|
|
<a class="supportLink" href="//support.nlm.nih.gov?from=" target="_blank">NLM Support Center</a>
|
|
|
|
</p>
|
|
|
|
<p class="footerRight">
|
|
<strong>Last updated:</strong> 28 May 2019</p>
|
|
</div>
|
|
</div>
|
|
<map id="nlm_masthead_113" name="nlm_masthead_113">
|
|
<area shape="rect" alt="NLM Technical Bulletin" coords="1,15,396,45" href="//www.nlm.nih.gov/pubs/techbull/tb.html" title="NLM Technical Bulletin" />
|
|
<area shape="rect" alt="National Library of Medicine" coords="0,47,203,62" href="//www.nlm.nih.gov/" title="National Library of Medicine" />
|
|
<area shape="rect" coords="207,47,396,62" href="//www.nih.gov/" alt="National Institutes of Health" title="" />
|
|
</map>
|
|
<!--*****************************Content end*******************************-->
|
|
<script src="/scripts/support.js"></script>
|
|
<script src="/core/nlm-notifyExternal/1.0/nlm-notifyExternal.min.js"></script>
|
|
</body>
|
|
</html>
|
|
|