555 lines
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555 lines
26 KiB
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<td colspan="5"><span class="issueDateMenu" >2011 MARCH–APRIL</span> <span class="issueNum">No. 379</span>
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<div class="actions">March 25, 2011 <span class="status">[posted]</span>
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<br />
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April 20, 2011
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<span class="status">
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[<a href="#note">Editor's note added</a>]
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</span>
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</div>
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<h1>My NCBI Redesign</h1>
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<p class="editorsnote"><a name="note"></a><em>[Editor's note: These changes were implemented in PubMed on April 20, 2011.]</em>
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</p>
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<p>
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The National Center for Biotechnology Information (NCBI) is pleased to announce that an improved user interface will be released for <a href="//www.ncbi.nlm.nih.gov/sites/myncbi/">My NCBI</a>. The new interface will eliminate complexities and provide a streamlined interface, robust performance, and intuitive navigation. The most visually significant enhancement is that all functions are viewed directly from the My NCBI homepage, where they are made readily accessible for set up and customization.
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</p>
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<p>
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The following are highlights of the new My NCBI interface.
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</p>
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<h2>My NCBI Homepage</h2>
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<p>
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The My NCBI homepage has been streamlined. It is easier to use and all stored data can be viewed at a glance. Additionally, you can now access your stored data quickly and, in most cases, set up and edits are only one click away (see <a href="#fig1">Figure 1</a>).
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</p>
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<div class="figure" style="width: 625px;"> <a name="fig1" id="fig1"><img src="graphics/myncbi_fig1_short.png" alt="Screen capture of New My NCBI Homepage." title="Screen capture of New My NCBI Homepage" width="623" height="601" /><br /> <strong>Figure 1: New My NCBI homepage.</strong></a> </div>
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<p>
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The homepage display can be customized by dragging and dropping each function window to the top, middle, or bottom of the page. Each function window can also be minimized or removed from the homepage display (click the link "Customize this Page" at the top of the page). To see the display customizer in action, click <a href="http://www.youtube.com/watch?v=ks46w3mNAQE">NCBI YouTube</a>.
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</p>
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<p>
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Set up display preferences for NCBI databases, such as display format, number of records per page, filters and highlighting color, among other choices, by clicking the link "NCBI Site Preferences" (top right corner of the My NCBI homepage). This is also where you can change your password and e-mail address.
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</p>
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<p>
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NCBI databases can now be searched directly from the My NCBI homepage. In the "Search NCBI databases" window, select a database from the drop-down menu, enter your search terms and click Search. Alternatively, to go directly to a database homepage, simply select the database from the drop-down menu and click "Search."
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</p>
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<p>
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The new homepage includes the blue NCBI header that includes a drop-down menu of resources organized by topic as well as the NCBI Footer, with links to popular NCBI resources.
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</p>
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<h2>Saved Searches</h2>
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<p>
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The Saved Searches feature facilitates saving search queries for NCBI databases, and provides automatic e-mail updates for saved searches, which can be set up on a daily, weekly, or monthly basis. In the Saved Searches window (see <a href="#fig2">Figure 2</a>) you can now easily:
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</p>
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<ul>
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<li>View a list of all saved searches grouped by database.</li>
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<li>Click on the search name to see the results directly in the source database.</li>
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<li>Create, change, or delete scheduled e-mail alerts by clicking the gear icon <img src="graphics/gear1.png"
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alt="image of a gear"
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title="image of a gear" width="16" height="15" /> next to a search name.</li>
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<li>Check for new search results by clicking on the number in the "What's New" column (<strong>A</strong> in <a href="#fig2">Figure 2</a>)</li>
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<li>View when a saved search was last searched (<strong>B</strong> in <a href="#fig2">Figure 2</a>).</li>
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</ul>
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<div class="figure" style="width: 455px;"> <a name="fig2" id="fig2"><img src="graphics/myncbi_fig2.png" alt="Screen capture of Saved Searches window." title="Screen capture of Saved Searches window" width="453" height="355" /><br /> <strong>Figure 2: Saved Searches window.</strong></a> </div>
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<p>
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Use the "Manage Saved Searches" link (<strong>C</strong> in <a href="#fig2">Figure 2</a>) to sort or delete multiple saved searches at once.
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</p>
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<h2>Collections</h2>
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<p>
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The Collections feature allows search results and records from any NCBI database to be saved in My NCBI. From the Collections window (see <a href="#fig3">Figure 3</a>) you can:</p>
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<ul>
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<li>View a list of all collections, the collection type, and the number of items stored for each collection.</li>
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<li>View all the items available for a collection directly in the source database by clicking on a Collection Name link.</li>
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<li>Save collections to a CSV or text file, or delete items in a collection by clicking the gear icon <img src="graphics/gear1.png"
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alt="image of a gear"
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title="image of a gear" width="16" height="15" /> next to a collection name.</li>
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<li>Change a collection privacy status — from private to public (to share with others) or vice versa (<strong>A</strong> in <a href="#fig3">Figure 3</a>).</li>
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</ul>
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<div class="figure" style="width: 457px;"> <a name="fig3" id="fig3"><img src="graphics/myncbi_fig3.png" alt="Screen capture of Collections window." title="Screen capture of Collections window" width="455" height="296" /><br /> <strong>Figure 3: Collections window.</strong></a> </div>
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<p>
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Use the link "Manage Collections" to sort, merge, or delete collections (<strong>B</strong> in <a href="#fig3">Figure 3</a>).
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</p>
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<h2>My Bibliography</h2>
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<p>
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My Bibliography provides a centralized place where citations are easily stored, accessed, exported as a file, and made public to share with others. In the My Bibliography window (see <a href="#fig4">Figure 4</a>) you can:
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</p>
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<ul>
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<li>View most recently added citations. Click on a citation title link to see the complete record in PubMed<span class="registered">®</span>.</li>
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<li>View the total number of citations available in My Bibliography, which is a link to the complete list.</li>
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<li>Click "settings" to change a My Bibliography privacy status from private to public (to share it with others ) or vice versa. On the settings page you can also grant access to other persons (delegates) to view and manage your My Bibliography collection (<strong>A</strong> in <a href="#fig4">Figure 4</a>).</li>
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</ul>
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<div class="figure" style="width: 409px;"> <a name="fig4" id="fig4"><img src="graphics/myncbi_fig4.png" alt="Screen capture of Collections window." title="Screen capture of Collections window" width="407" height="449" /><br /> <strong>Figure 4: My Bibliography window.</strong></a> </div>
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<p>
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Click the link "Manage My Bibliography" (<strong>B</strong> in <a href="#fig4">Figure 4</a>) to go to the My Bibliography page (see <a href="#fig5">Figure 5</a>). From the My Bibliography page you can:
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</p>
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<ul>
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<li>Add citations manually for publications not found in PubMed. My Bibliography has multiple templates with fields pertinent to journal articles, books/chapters, meeting abstracts, presentations, patents, and non-standard citations. Click the Add citation button: <img src="graphics/add_cite17.png"
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alt="image of add citation button"
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title="image of add citation button" width="68" height="17" />.</li>
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<li>Sort citations by date, author, or title by clicking "Display Settings."</li>
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<li>View all information related to a citation in PubMed by clicking on each article title link, or select multiple citations and then click "View."</li>
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<li>View your citations without links and item numbers by clicking "Display Settings" and selecting Print.</li>
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<li>Move a citation from My Bibliography to Other Citations (a separate bibliography located in Collections); select the citations and click "Move."</li>
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<li>Delete citations by selecting the citations and click "Delete."</li>
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<li>Download citations from My Bibliography. Select the citations and click the Download button: <img src="graphics/download17.png"
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alt="image of download button"
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title="image of download button" width="62" height="17" />. All citations will be downloaded in the MEDLINE format.</li>
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<li>Suggest individual citations to others. Select the citations, click "Suggest" and then enter the recipient's name and e-mail address. Multiple recipients can be added to receive citations using the "Suggest" feature.</li>
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<li>Recipients of suggested citations can add these directly to their My Bibliography.</li>
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</ul>
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<div class="figure" style="width: 609px;"> <a name="fig5" id="fig5"><img src="graphics/myncbi_fig5.png" alt="Screen capture of My Bibliography page." title="Screen capture of My Bibliography page" width="607" height="239" /><br /> <strong>Figure 5: My Bibliography page.</strong></a> </div>
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<p>
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"Display Settings" offers more options for My NCBI accounts associated with <a href="//era.nih.gov/commons/faq_commons.cfm#I1">eRA Commons</a> accounts. The association is indicated by the eRA icon (see <a href="#fig6">Figure 6</a>). The additional settings available are: </p>
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<!--
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For eRA Commons users, "Display Settings" offers other options. These options are available for My NCBI accounts associated with eRA Commons accounts. The association is indicated by the eRA (see <a href="#fig6">Figure 6</a>) including:-->
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<ul>
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<li>Award view</li>
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<li>Sort by Public Access Compliance</li>
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<li>Group by Award</li>
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</ul>
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<br /><br />
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<p>Award view allows eRA Commons users to see whether their publications comply with the NIH Public Access Policy, to start the compliance process for journal articles, and to associate their publications to NIH extramural awards. <!--The eRA icon <img src="graphics/era17.png"
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alt="image of download button"
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title="image of download button" width="17" height="17" /> is visible for any My NCBI account that has been associated with an eRA Commons account (see <a href="#fig6">Figure 6</a>).-->
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</p>
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<div class="figure" style="width: 448px;"> <a name="fig6" id="fig6"><img src="graphics/myncbi_fig6b.png" alt="Screen capture of Award view." title="Screen capture of Award view" width="446" height="246" /><br /> <strong>Figure 6: Award view with eRA icon.</strong></a> </div>
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<p>
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Select Award view and click on the Apply button; on the resulting screen each citation is marked indicating its compliance status:
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</p>
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<ul>
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<li>A red dot indicates that an article is non-compliant.</li>
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<li>A yellow dot means that the citation has been submitted to the NIH Manuscript Submission system and is considered in process.</li>
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<li>A green dot indicates that the citation is compliant with the NIH Public Access Policy. The PubMed Central ID (PMCID) number displays in this status.</li>
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<li>A question mark indicates that compliance with the NIH Public Access Policy cannot be determined without additional information. Click on the question mark icon or the "Edit Status" link to enter supporting information for the citation.</li>
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<li>Articles that were accepted for publication prior to April 7, 2008 are not covered by the NIH Public Access Policy. These citations will be marked as N/A for Not Applicable (this status is also automatically applied to citation types that are not journal articles, e.g., book chapters, patents, presentations).</li>
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</ul>
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<br /><br />
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<p>
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To address Public Access Compliance, activate the pop-up wizard (see <a href="#fig7">Figure 7</a>) by clicking either a red dot or a question mark icon. The wizard helps you begin a manuscript submission, link to a previously-submitted manuscript, or determine if a citation is exempt from the policy. In addition, you can associate awards to your publications through the wizard. See <a href="//www.nlm.nih.gov/pubs/techbull/jf10/jf10_myncbi_redesign.html"><em>My NCBI: Managing Compliance with the NIH Public Access Policy Using My Bibliography</em></a> for additional information.</p>
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<div class="figure" style="width: 514px;"> <a name="fig7" id="fig7"><img src="graphics/myncbi_fig7.png" alt="Screen capture of Award view." title="Screen capture of Award view" width="512" height="493" /><br /> <strong>Figure 7: NIH Public Access compliance pop-up wizard.</strong></a> </div>
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<p>
|
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To associate multiple citations with NIH awards, select the citations to associate to NIH awards and click the Assign Awards to Citations button: <img src="graphics/assign_award20.png"
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alt="image of download button"
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title="image of download button" width="211" height="20" />. Choose the pertinent award ID from the list presented (see <a href="#fig8">Figure 8</a>).
|
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</p>
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<div class="figure" style="width: 622px;"> <a name="fig8" id="fig8"><img src="graphics/myncbi_fig8a.png" alt="Screen capture of Award view." title="Screen capture of Award view" width="620" height="454" /><br /> <strong>Figure 8: Assign Awards window.
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</strong></a> </div>
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<h2>Filters</h2>
|
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<p>
|
|
NCBI databases search results can be limited to smaller groups of data using filters. In the Filters window (see <a href="#fig9">Figure 9</a>) you can quickly:
|
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</p>
|
|
|
|
|
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<ul>
|
|
<li>View a list of all active filters according to each database by using the drop-down menu "Filters for."</li>
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<li>Deactivate filter selections by unchecking the box next to a filter name.</li>
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<li>Change or delete custom filters by clicking the gear icon <img src="graphics/gear1.png"
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alt="image of a gear"
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title="image of a ge" width="16" height="15" />.</li>
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</ul>
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<div class="figure" style="width: 330px;"> <a name="fig9" id="fig9"><img src="graphics/myncbi_fig9.png" alt="Screen capture of Filters window." title="Screen capture of Filters window" width="328" height="302" /><br /> <strong>Figure 9: Filters window.</strong></a> </div>
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<p>
|
|
Click the link "Manage Filters" (<strong>A</strong> in <a href="#fig9">Figure 9</a>) to set up filters for any NCBI database. In the Filters window (see <a href="#fig10">Figure 10</a>), browse a list of filters divided into four categories: </p>
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|
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<ul>
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|
<li>"Popular" lists commonly requested filters for each NCBI database.</li>
|
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<li>"LinkOut" filters group records that have links to resources provided by outside organizations.</li>
|
|
<li>"Properties" filters group records according to specific criteria for each database, such as languages, gender, age groups, publication type for PubMed; biosource, molecule type, RefSeq for Nucleotide among many others.</li>
|
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<li>"Links" filters group records that have links to other NCBI databases.</li>
|
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</ul>
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<p>
|
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To select and activate a filter, select the checkbox next to a filter name. In addition, you can search for filter names and descriptions using the "Search with Terms" search box, and can create custom filters by clicking the "Create custom filter" button: <img src="graphics/create_custom_filter17.png"
|
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alt="image of create custom filter button"
|
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title="image of create custom filter button" width="141" height="17" />.
|
|
</p>
|
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|
|
<div class="figure" style="width: 622px;"> <a name="fig10" id="fig10"><img src="graphics/myncbi_fig10a.png" alt="Screen capture of Filters page." title="Screen capture of Filters page" width="620" height="440" /><br /> <strong>Figure 10: Filters page.</strong></a> </div>
|
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|
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<p>
|
|
For details regarding setting up filters in My NCBI please see My NCBI <a href="//www.ncbi.nlm.nih.gov/books/NBK3843/">Help</a>.
|
|
</p>
|
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<h2>Recent Activity</h2>
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|
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<p>
|
|
Recent Activity provides a history of queries searched and records retrieved in NCBI databases for the last six months. In the Recent Activity window (see <a href="#fig11">Figure 11</a>):
|
|
</p>
|
|
|
|
|
|
<ul>
|
|
<li>View a list of recent queries searched and records retrieved in NCBI databases. Click on the search or record link to see the results directly in the source database.</li>
|
|
<li>Click the link "Turn Off" to stop recording searches and records in Recent Activity.</li>
|
|
<li>Click the link "Clear" to delete Recent Activity history.</li>
|
|
</ul>
|
|
|
|
|
|
<div class="figure" style="width: 456px;"> <a name="fig11" id="fig11"><img src="graphics/myncbi_fig11.png" alt="Screen capture of Recent Activity window." title="Screen capture of Recent Activity window" width="454" height="443" /><br /> <strong>Figure 11: Recent Activity window.</strong></a> </div>
|
|
|
|
<p>
|
|
Click the link "See All Recent Activity" (<strong>A</strong> in <a href="#fig11">Figure 11</a>) to sort data by date or database, to save recent activity searches to Saved Searches, to copy records to Collections, or to delete individual searches or records (see <a href="#fig12">Figure 12</a>).
|
|
</p>
|
|
|
|
<div class="figure" style="width: 622px;"> <a name="fig12" id="fig12"><img src="graphics/myncbi_fig12a.png" alt="Screen capture of Recent Activity window." title="Screen capture of Recent Activity window" width="620" height="332" /><br /> <strong>Figure 12: Recent Activity page.</strong></a> </div>
|
|
|
|
<p>
|
|
For detailed information about My NCBI, please see My NCBI <a href="//www.ncbi.nlm.nih.gov/books/NBK3843/">Help</a>.
|
|
</p>
|
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<p class="authors">
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By
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Lidia Hutcherson<br />
|
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National Center for Biotechnology Information<br />
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</p>
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<img src="../new_tb_graphics/black_pixel.gif" width="450" height="1" alt="" />
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<!--************************CHANGE CITATION INFORMATION BELOW*****************************-->
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<p class="citation">Hutcherson L. My NCBI Redesign. NLM Tech Bull. 2011 Mar-Apr;(379):e9.</p>
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