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620 lines
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<TITLE>Technical Notes. NLM Technical Bulletin. Jan-Feb 2001</TITLE>
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<meta name="DC.Subject.IssueNum" content="318" />
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<meta name="DC.Subject.Keyword" content="Book" />
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<meta name="DC.Subject.Keyword" content="Health Services and Technology Assessment Research Database" />
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<meta name="DC.Subject.Keyword" content="Health Services Research" />
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<meta name="DC.Subject.Keyword" content="Indexing" />
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<tr><td width="30"> </td><td width="470">
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<h3><a name = "pubmed">PubMed Status</a></h3>
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<p><table border="0" width="215" align="right">
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<tr><td width="215" align="center">
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<table border="1" width="200" cellpadding="5" align="right">
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<tr><td>
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<center><font size="4" face="helvetica, arial"><strong>Technical Notes</strong></font></center><br />
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<font size="2" face="helvetica, arial">
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<a href = "#pubmed" class="TEXT">PubMed Status</a> -
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<font size="1" face="helvetica, arial"><em>[Editor's Note added on February 20, 2001.]</em></font><br /><br />
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<a href = "#locator" class="TEXT">2001 MeSH in LocatorPlus</a><br /><br />
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<a href = "#license" class="TEXT">Revision to NLM's License Agreement to Lease NLM Databases in Machine-Readable Form</a><br /><br />
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<a href = "#update" class="TEXT">PubMed Status Update</a><br /><br />
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<a href = "#edat" class="TEXT">Small Number of PubMed Citations Receive New Entrez Date (EDAT)</a><br /><br />
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<a href = "#gateway" class="TEXT">New Version of the NLM Gateway Released</a><br /><br />
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<a href = "#mesh" class="TEXT">Expanded Access to MeSH</a><br /><br />
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<a href = "#resume" class="TEXT">MEDLINE Updates Resume in PubMed</a><br /><br />
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<a href = "#aids" class="TEXT">The XIII International AIDS Conference Meeting Abstracts Available in the NLM Gateway</a><br /><br />
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</td></tr></table>
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<font size="2"><strong>January 18, 2001</strong> [posted]<br />
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<strong>February 20, 2001</strong> [<a href="#note">Editor's Note added</a>]</font><br />
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<p>
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Effective Tuesday, January 16, 2001, the National Center for Biotechnology and Information (NCBI) temporarily stopped the daily updating of PubMed with new publisher-supplied and in-process citations as they work on making the necessary changes to reload MEDLINE data following 2000-to-2001 year-end maintenance. We expect this interruption to last until about January 26, 2001, if all goes well, or later, if we encounter problems. An article describing PubMed changes happening as part of this reload will soon be available in the <a href="/pubs/techbull/jf01/jf01_pubmed_2001.html"><em>NLM Technical Bulletin</em></a>. We predict that the system will be replaced and publicly searchable before the end of January. Then daily updates with publisher-supplied and in-process citations will resume. Also, the newly indexed MEDLINE citations from the beginning of the 2001 indexing year will be added and weekly updates for these indexed citations will resume according to the published <a href="http://www.nlm.nih.gov/pubs/techbull/nd00/nd00_medline_update.html">update schedule</a>. For searches limited to MeSH headings, users will then start retrieving newly indexed citations whether using the PubMed query box or the current awareness Cubby feature.
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</p>
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<p>
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<em>[<a name = "note">Editors Note</a>: Please see the Technical Note <a href = "#update">PubMed Status Update</a> in this issue of the NLM Technical Bulletin for the most current information.]</em>
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/> <font size="2">
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<a href = "/pubs/techbull/jf01/jf01_technote.html">top of page</a></font> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/></center><br /><br />
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<h3><a name = "locator">2001 MeSH in LocatorPlus</a></h3>
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<font size="2"><strong>February 01, 2001</strong> [posted]</font>
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<p>
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As of December 18, 2000, MeSH subject authority records in LocatorPlus, the online public access catalog module of NLM's Voyager integrated library system, were changed to reflect 2001 MeSH. These changes are also reflected in the LocatorPlus records accessed via the NLM Gateway.
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</p>
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<p>
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Use MeSH 2001 when searching for books, journals, audiovisuals, or other resources by MeSH subject in LocatorPlus or in the NLM Gateway.
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</p>
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<p>
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MeSH 2001 is the subject authority, or controlled vocabulary, for headings in LocatorPlus in the following fields:
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</p>
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<table border="0" width="500">
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<tr>
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<td width="100"><strong>MARC21 field</strong></td>
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<td width="400"><strong>contains</strong></td>
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</tr>
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<tr>
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<td width="100">650</td>
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<td width="400">main headings or main headings and topical subheadings
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</td>
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</tr>
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<tr>
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<td width="100">651</td>
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<td width="400">geographic qualifiers</td>
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</tr>
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<tr>
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<td width="100">655</td>
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<td width="400">Publication Types</td>
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</tr>
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</table>
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<p>
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For more information on how to search for fields in NLM LocatorPlus, see http://www.nlm.nih.gov/services/lpfields.html#heading.
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</p>
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<!-- Link removed 05-14-2019 because it no longer worked. No known direct replacement.-->
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<p>
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In the <em>2001 Medical Subject Headings Annotated Alphabetic List</em>, users are advised to annotate the printed tool as follows:
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</p>
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<ul>
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<li>
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In the list headed "Publication Types - Genre Terms"identified as "Generally Used for Cataloging" (p. I-28), add the genre term "Evaluation Studies". This term will be included in the list in the next edition of the <em>Medical Subject Headings Annotated Alphabetic List</em>.<br /><br /></li>
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<li>In the section headed "Publication Types - Scope Notes", add the new Publication Type "Validation Studies" with the scope note "Used by Special Data Producers Only". Catalogers do not use this Publication Type at this time. This term will be correctly annotated in the next edition of the <em>Medical Subject Headings Annotated Alphabetic List</em>.</li>
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</ul>
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<p>
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For more information on how NLM catalogers apply MeSH, see <a href="/tsd/cataloging/catmesh.html">http://www.nlm.nih.gov/tsd/cataloging/catmesh.html</a>.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/> <font size="2">
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<a href = "/pubs/techbull/jf01/jf01_technote.html">top of page</a></font> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/></center><br /><br />
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<h3><a name = "license">Revision to NLM's License Agreement to Lease NLM Databases in Machine-Readable Form</a></h3>
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<font size="2"><strong>February 01, 2001</strong> [posted]</font>
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<p>
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The National Library of Medicine's <a href="/databases/license/license_agr.html">License Agreement to Lease NLM Databases in Machine-Readable Form</a> has been revised. A sentence has been added at the end of section E3. The section now reads:<br /><br />
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<strong>E. RESTRICTIONS ON USE, DUPLICATION, AND REDISTRIBUTION OF MACHINE-READABLE DATA</strong><br />
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3. The Licensee shall inform its users that the duplication, resale, or redistribution of data obtained under this Agreement must conform to fair use guidelines and U.S. and international copyright law. Any duplication, resale, or redistribution by the Licensee or its users who provide information services or products from NLM databases obtained directly or indirectly from the Licensee must also conform to NLM's quality assurance requirements listed in Paragraphs D.2.a. through D.2.o., copyright constraints listed in Paragraph F., and usage reports listed in Paragraph J. Written approval from NLM is required before a non-U.S. licensee duplicates, resells, or
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redistributes NLM data (except cataloging records) to others.
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</p>
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<p>
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Per Section M of the License, the modification is binding upon publication in the <em>NLM Technical Bulletin</em>.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/> <font size="2">
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<a href = "/pubs/techbull/jf01/jf01_technote.html">top of page</a></font> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/></center><br /><br />
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<h3><a name = "update">PubMed Status Update</a></h3>
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<font size="2"><strong>February 16, 2001</strong> [posted]</font>
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<p>
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On November 7, 2000, NLM temporarily stopped adding fully indexed citations to PubMed and on January 16, 2001, the Library stopped the daily updating of PubMed with new publisher-supplied and in-process citations. These actions were taken to accommodate both NLM's internal maintenance cycle known as Year-End Processing (YEP) and the replacement of our system that manages the data entry, indexing, and quality control of journal citations. Although we expected these interruptions to last only through January 26, 2001, the updating of publisher-supplied, in-process and fully indexed citations to PubMed was delayed past this date.
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</p>
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<p>
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On February 2, 2001, the MEDLINE data were reloaded into PubMed. This reload included MEDLINE citations through the end of the 2000 indexing year which were updated to reflect changes to 2001 MeSH. Also, the 2001 MeSH vocabulary was incorporated into PubMed's MeSH Browser and MeSH translation table.
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</p>
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<p>On February 7, 2001, we resumed loading new citations into PubMed with a small number (approximately 2,000) of publisher-supplied citations. On February 13, 2001 we loaded another 11,000 publisher-supplied citations into PubMed. We loaded the remaining backlog of publisher-supplied citations and resumed our regular <a href="http://www.nlm.nih.gov/pubs/techbull/nd00/nd00_medline_update.html">update schedule</a> for these citations on February 15, 2001.</p>
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<p>
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The newly indexed MEDLINE citations from the beginning of the 2001indexing year and the backlog of in-process citations will be added to PubMed soon and updates for these citations will resume according to the published update schedule. </p>
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<p>
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Please see the <a href="http://www.nlm.nih.gov/pubs/techbull/jf01/jf01_pubmed_2001.html">Changes to PubMed for 2001</a> article in this issue of the <em>NLM Technical Bulletin</em> for a description of the changes happening as part of the reload and NLM's new Data Creation and Maintenance System (DCMS).
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</p>
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<p>
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The MEDLINE reload data were sent to licensees the week of February 5, 2001. The MEDLINE in-process citations and newly indexed citations since the beginning of the 2001 indexing year will be made available for licensees to ftp as soon as NLM has successfully added the data to PubMed. Licensees are reminded that NLM sends them e-mail notifications regarding data distribution issues and schedules. These notifications are also posted on NLM's Web site for licensees at <a href="/bsd/licensee.html">http://www.nlm.nih.gov/bsd/licensee.html</a>.
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</p>
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<p>
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We appreciate your patience and understanding as NLM navigates through this major reinvention initiative. This is the final leg of our migration from the old, mainframe MEDLINE computer applications to more modern information technology architecture. It has been a long journey and this most recent year-end cycle took longer than usual as we juggled transition issues. As NLM's own 2001 system has been delayed, users should expect similar delays in the delivery of products from other vendors as they make their own adjustments.
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<p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/> <font size="2">
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<a href = "/pubs/techbull/jf01/jf01_technote.html">top of page</a></font> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/></center><br /><br />
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<h3><a name = "edat">Small Number of PubMed Citations Receive New Entrez Date</a></h3>
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<font size="2"><strong>February 21, 2001</strong> [posted]</font>
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<p>
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All PubMed citations have an EDAT (Entrez Date) field to indicate the date the citation first entered PubMed. It was recently discovered that approximately 4,000 PubMed citations did not have an EDAT value. A record without an EDAT cannot be retrieved by a search. In order to correct this as quickly as possible, these records were assigned a new EDAT value of 2001/02/07.
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</p>
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<p>
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Approximately 3,000 of these citations stand out because they are MEDLINE citations and their MHDA (the date the citation was indexed with MeSH Terms and elevated to MEDLINE status) is now older than the EDAT.
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</p>
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<dl>
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<dd>Example:<br /><br /></dd>
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<dd>PMID- 10819728</dd>
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<dd>EDAT- 2001/02/07 11:00</dd>
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<dd>MHDA- 2000/05/20 9:00</dd>
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</dl>
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<p>
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This may result in citations with this EDAT (2001/02/07) being retrieved a second time by a Cubby stored search, or by a search that includes a date range or limit.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/> <font size="2">
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<a href = "/pubs/techbull/jf01/jf01_technote.html">top of page</a></font> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/></center><br /><br />
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<h3><a name = "gateway">New Version of the NLM Gateway Released</a></h3>
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<font size="2"><strong>February 21, 2001</strong> [posted]</font>
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<p>
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A new version of the NLM Gateway was released on February 2, 2001. Changes include the following:
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</p>
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<ul>
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<li> A new collection, "HSR Meetings," was added to the NLM Gateway in the Meeting Abstracts
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category. The HSR Meetings collection includes the meeting abstracts from the former HealthSTAR database. </li>
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<li>A new collection, "DIRLINE," was added to the NLM Gateway in the Consumer Health category.
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The DIRLINE collection is a directory of health-related organizations. The <a href="/pubs/factsheets/dirlinfs.html">DIRLINE fact sheet</a> provides
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additional information on this resource. </li>
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<li>Two new field qualifiers were added for searching. You may now search by Unique Identifier ([UI])
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and by Substance Name ([NM]). The NLM Gateway <a href="http://gateway.nlm.nih.gov/gw/Cmd?Help.x#Fields">Help</a> provides information on searching by fields.</li>
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<li>The search box was added to the Locker, Preferences, and Login pages. </li>
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</ul>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/> <font size="2">
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<a href = "/pubs/techbull/jf01/jf01_technote.html">top of page</a></font> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/></center><br /><br />
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<h3><a name = "mesh">Expanded Access to MeSH</a></h3>
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<font size="2"><strong>February 21, 2001</strong> [posted]</font>
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<p>
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The MeSH Section continues to provide access via the MeSH Browser for two years of the MeSH vocabulary: the current year (default) and an alternate year accessible by a link on the MeSH Browser Home Page.</p>
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<p>
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The access will follow a rotation as successive years of MeSH are created. Old MeSH (the previous year's vocabulary) will be available until October. New MeSH (the next year's vocabulary) will be available from October through December, after which it will become Current MeSH.
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</p>
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<table border="0" width="500">
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<tr>
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<td width="134"><strong>MeSH Browser File</strong></td>
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<td width="133"><strong>January-September</strong></td>
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<td width="133"><strong>October-December</strong></td>
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</tr>
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<tr>
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<td width="134">Primary </td>
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<td width="133">Current MeSH [2001]</td>
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<td width="133">Current MeSH [2001]</td>
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</tr>
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<tr>
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<td width="134">Alternate </td>
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<td width="133">Old MeSH [2000]</td>
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<td width="133">New MeSH [2002] </td>
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</tr>
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</table>
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<br />
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/> <font size="2">
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<a href = "/pubs/techbull/jf01/jf01_technote.html">top of page</a></font> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/></center><br /><br />
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<h3><a name = "resume">MEDLINE Updates Resume in PubMed</a></h3>
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<font size="2"><strong>February 28, 2001</strong> [posted]</font>
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<p>
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We have resumed updating PubMed with MEDLINE citations. On February 28, over 120,000 indexed (MEDLINE) citations were loaded in PubMed. MEDLINE citations will return to a weekly <a href="/pubs/techbull/nd00/nd00_medline_update.html">update schedule</a> in PubMed.
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</p>
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<p>
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We, again, apologize for the delay in the resumption of updates, and thank you for your patience as we continue with the transition to our new organization of databases (<a href="/pubs/techbull/mj00/mj00_buckets.html">http://www.nlm.nih.gov/pubs/techbull/mj00/mj00_buckets.html</a>).
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/> <font size="2">
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<a href = "/pubs/techbull/jf01/jf01_technote.html">top of page</a></font> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/></center><br /><br />
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<p>
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**************<br />
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<h2>INDEX TERMS</h2>
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Terms will not be published on this page but will be incorporated into the <em>NLM Technical Bulletin</em> Index.<br />
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<h3>Tech Note: PubMed Status</h3>
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<strong>Index Term 1:</strong> PubMed/2001 Update.
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</p>
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<p>
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**************<br />
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<h3>Tech Note: The XIII International AIDS Conference Meeting Abstracts Available in
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the NLM Gateway</h3>
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<strong>Index Term 1:</strong> International Conference on AIDS/Thirteenth, meeting abstracts added to NLM Gateway.<br />
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<strong>Index Term 2:</strong> NLM Gateway/International Conference on AIDS, Thirteenth, meeting abstracts added.<br />
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<strong>Index Term 3:</strong> NLM Gateway/Meeting Abstracts Category/AIDS Meetings/International Conference on AIDS, Thirteenth, meeting abstracts added.<br />
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<strong>Index Term 4:</strong> AIDSLINE/International Conference on Aids/Thirteenth, meeting abstracts not added to AIDSLINE.<br />
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<strong>Index Term 5:</strong> AIDSLINE/Database to be dismantled.<br />
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<strong>Index Term 6:</strong> PubMed/AIDSLINE unique journal citations to be added to PubMed.<br />
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<strong>Index Term 7:</strong> NLM Gateway/AIDS Meetings (with MeSH) Category/International Conference on AIDS Meeting Abstracts to be added.<br />
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<strong>Index Term 8:</strong> Specialized Information Service Web site/International Conference on AIDS, Thirteenth, meeting abstracts searchable.
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</p>
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<p>
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**************<br />
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<h3>Tech Note: 2001 MeSH in LocatorPlus</h3>
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<strong>Index Term 1:</strong> LocatorPlus/MeSH subject authority records reflect 2001 MeSH.<br />
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<strong>Index Term 2:</strong> NLM Gateway/LocatorPlus records reflect 2001 MeSH.<br />
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<strong>Index Term 3:</strong> Publications/Medical Subject Headings - Annotated Alphabetic List/Annotate 2001 printed tool as recommended.<br />
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<strong>Index Term 4:</strong> LocatorPlus/MARC21 field/MeSH 2001 is the subject authority.<br />
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<strong>Index Term 5:</strong> MeSH/LocatorPlus/MARC21 field/MeSH 2001 is the subject authority.
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</p>
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<p>
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**************<br />
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<h3>Tech Note: Revision to NLM's License Agreement to Lease NLM Databases in
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Machine-Readable Form</h3>
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<strong>Index Term 1:</strong> License Agreement to Lease NLM Data/Revision to NLM's License Agreement to Lease NLM Databases in Machine-Readable Form/Section E3 revised.
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</p>
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<p>
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**************<br />
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<h3>Tech Note: New Version of the NLM Gateway Released</h3>
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<strong>Index Term 1:</strong> NLM Gateway/New Features/HSR Meetings.<br />
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<strong>Index Term 2:</strong> NLM Gateway/New Features/DIRLINE.<br />
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<strong>Index Term 3:</strong> NLM Gateway/New Features/Unique Identifier ([UI]).<br />
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<strong>Index Term 4:</strong> NLM Gateway/New Features/Substance Name ([NM]).<br />
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<strong>Index Term 5:</strong> Health Services Research Meetings/New Version of the NLM Gateway Released.<br />
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<strong>Index Term 6:</strong> DIRLINE/New Version of the NLM Gateway Released.<br />
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<strong>Index Term 7:</strong> Unique Identifier ([UI])/New Version of the NLM Gateway Released.<br />
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<strong>Index Term 8:</strong> Substance Name ([NM])/New Version of the NLM Gateway Released.<br />
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</p>
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<p>
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**************<br />
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<h3>Tech Note: Expanded Access to MeSH</h3>
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<strong>Index Term 1:</strong> MeSH (Medical Subject Headings)/Expanded Access.<br />
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<strong>Index Term 2:</strong> MeSH Browser/Expanded Access to MeSH.
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</p>
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<p>
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**************<br />
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<h3>Tech Note: Small Number of PubMed Citations Receive New Entrez Date (EDAT)</h3>
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<strong>Index Term 1:</strong> PubMed/Small Number of PubMed Citations Receive New Entrez Date (EDAT).<br />
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</p>
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-->
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<!--
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<h3><a name = "aids">The XIII International AIDS Conference Meeting Abstracts Available in the NLM Gateway</a></h3>
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<font size="2"><strong>January xx, 2001</strong> [posted]</font>
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<p>
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The 5155 meeting abstracts from the XIII International Conference on AIDS held in Durban, South Africa from July 9-14, 2000, are now available in the Meeting Abstracts Category. Currently the Meeting Abstracts Category has two collections; AIDS Meetings, which contains conferences that are not indexed with NLM MeSH terms, and AIDS Meetings (with MeSH), which contains meeting abstracts from AIDSLINE that are indexed with MeSH terms through 2000. The XIII International AIDS Conference meeting abstracts are in the AIDS Meetings collection as they do not include MeSH indexing.
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</p>
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<p>
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The XIII International AIDS Conference meeting abstracts will not be added to AIDSLINE. The 6th through the 12th International AIDS Conferences and some other HIV/AIDS-related conferences are still available in AIDSLINE (as well as the NLM Gateway) and can still be searched via Internet Grateful Med (IGM). However, as part of the NLM data conversion and <a href="/pubs/techbull/mj00/mj00_buckets.html">reorganization</a> AIDSLINE will soon be completely dismantled (see the article, <a href="http://www.nlm.nih.gov/pubs/techbull/jf01/jf01_igm_phaseout.html">Internet Grateful Med to Be Retired; Reminder of NLM Gateway Availability</a> in the January-February 2001 issue of the <em>NLM Technical Bulletin</em>). The unique journal citations will go into PubMed's MEDLINE and all of the meeting abstracts will then be added to the AIDS Meetings (with MeSH) collection in the NLM Gateway. Any future AIDS-related meeting abstracts will be added to the AIDS Meetings collection when they become available. MeSH terms will no longer be assigned to AIDS-realted meeting abstracts.
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</p>
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<p>
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The XIII International AIDS Conference meeting abstracts are also searchable for an extended period of time, from the NLM Specialized Information Service (SIS) web site at <a href="http://www.iac2000.org">http://www.iac2000.org</a>.
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</p>
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<center><img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/> <font size="2">
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<a href = "/pubs/techbull/jf01/jf01_technote.html">top of page</a></font> <img src="/pubs/techbull/new_tb_graphics/black_pixel.gif" width="50" height="1" alt="Black line"/></center><br /><br />
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<h3><a name = "mesh">MeSH® Files 2001 and Pharmacological Action Lists for 2001 Available for Downloading</a></h3>
|
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<font size="2"><strong>December 1, 2001</strong> [posted]</font>
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<p>
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The 2001 MeSH in ASCII Format, the 2001 MeSH Trees in ASCII format and the Pharmacological Action Lists for 2001 are now available for downloading at <a href = "http://www.nlm.nih.gov/mesh/filelist.html">http://www.nlm.nih.gov/mesh/filelist.html</a>.
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The 2001 MeSH tools may also be ordered from NTIS in printed format. See the Technical Note in this issue, titled <a href = "/pubs/techbull/so00/so00_technote.html#tools">MeSH® Tools 2001 - Available for Purchase</a>.
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</p>
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***************
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<p>
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Use of the legacy ELHILL Unit Record Format for data distribution has been phased out as part of NLM's widespread reinvention activities. NLM databases will now be distributed to licensees in <a href="/news/medlinedata.html">XML format</a> using a DTD to define the XML structure. There are no fees to lease NLM databases in 2001. See <a href="/databases/leased.html">http://www.nlm.nih.gov/databases/leased.html</a> for information about leasing NLM databases.
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</p>
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-->
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