77 lines
5.3 KiB
Text
77 lines
5.3 KiB
Text
#URL https://www.ncbi.nlm.nih.gov/snp/rs270/download/frequency
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#NCBI Reference SNP (rs) Report ALPHA rs270
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#Current Build 156
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#Released October 14, 2022
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#Organism Homo sapiens
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#Position chr8:19956165 (GRCh38.p14)
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#Alleles C>A
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#Variation Type SNV (Single Nucleotide Variation)
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#Publications 2 citations
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#
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#Frequency Data Table
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#################
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#Study Population Group Samplesize Ref Allele Alt Allele BioProject ID BioSample ID
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TopMed Global Study-wide 264690 C=0.864970 A=0.135030 PRJNA400167
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Allele Frequency Aggregator Total Global 212106 C=0.847553 A=0.152447 PRJNA507278 SAMN10492705
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Allele Frequency Aggregator European Sub 181838 C=0.843718 A=0.156282 SAMN10492695
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Allele Frequency Aggregator African Sub 9742 C=0.9078 A=0.0922 SAMN10492703
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Allele Frequency Aggregator Other Sub 7032 C=0.8518 A=0.1482 SAMN11605645
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Allele Frequency Aggregator Latin American 2 Sub 6902 C=0.8379 A=0.1621 SAMN10492700
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Allele Frequency Aggregator South Asian Sub 5044 C=0.8755 A=0.1245 SAMN10492702
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Allele Frequency Aggregator Latin American 1 Sub 844 C=0.827 A=0.173 SAMN10492699
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Allele Frequency Aggregator Asian Sub 704 C=0.881 A=0.119 SAMN10492704
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gnomAD - Genomes Global Study-wide 140178 C=0.857553 A=0.142447 PRJNA398795 SAMN07488253
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gnomAD - Genomes European Sub 75890 C=0.83103 A=0.16897 SAMN10181265
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gnomAD - Genomes African Sub 42028 C=0.90799 A=0.09201 SAMN07488254
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gnomAD - Genomes American Sub 13652 C=0.84039 A=0.15961 SAMN07488255
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gnomAD - Genomes Ashkenazi Jewish Sub 3324 C=0.8968 A=0.1032 SAMN07488252
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gnomAD - Genomes East Asian Sub 3132 C=0.8611 A=0.1389 SAMN07488251
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gnomAD - Genomes Other Sub 2152 C=0.8508 A=0.1492 SAMN07488248
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14KJPN JAPANESE Study-wide 28258 C=0.93308 A=0.06692 PRJNA678214 SAMN16789458
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8.3KJPN JAPANESE Study-wide 16760 C=0.93496 A=0.06504 PRJNA678214 SAMN16789458
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1000Genomes_30x Global Study-wide 6404 C=0.8748 A=0.1252 PRJEB31736 SAMN07490465
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1000Genomes_30x African Sub 1786 C=0.9289 A=0.0711 SAMN07486022
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1000Genomes_30x Europe Sub 1266 C=0.8310 A=0.1690 SAMN07488239
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1000Genomes_30x South Asian Sub 1202 C=0.8569 A=0.1431 SAMN07486027
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1000Genomes_30x East Asian Sub 1170 C=0.8829 A=0.1171 SAMN07486024
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1000Genomes_30x American Sub 980 C=0.845 A=0.155 SAMN07488242
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1000Genomes Global Study-wide 5008 C=0.8720 A=0.1280 PRJEB6930 SAMN07490465
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1000Genomes African Sub 1322 C=0.9266 A=0.0734 SAMN07486022
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1000Genomes East Asian Sub 1008 C=0.8889 A=0.1111 SAMN07486024
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1000Genomes Europe Sub 1006 C=0.8231 A=0.1769 SAMN07488239
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1000Genomes South Asian Sub 978 C=0.857 A=0.143 SAMN07486027
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1000Genomes American Sub 694 C=0.836 A=0.164 SAMN07488242
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Genetic variation in the Estonian population Estonian Study-wide 4480 C=0.8096 A=0.1904 PRJNA489787
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The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 C=0.8376 A=0.1624 PRJEB7217
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UK 10K study - Twins TWIN COHORT Study-wide 3708 C=0.8371 A=0.1629 PRJEB7218
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KOREAN population from KRGDB KOREAN Study-wide 2930 C=0.8894 A=0.1106 PRJNA589833
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HGDP-CEPH-db Supplement 1 Global Study-wide 2084 C=0.8839 A=0.1161 PRJEB6463
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HGDP-CEPH-db Supplement 1 Est_Asia Sub 470 C=0.877 A=0.123 SAMN13169023
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HGDP-CEPH-db Supplement 1 Central_South_Asia Sub 414 C=0.879 A=0.121 SAMN13169022
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HGDP-CEPH-db Supplement 1 Middle_Est Sub 350 C=0.923 A=0.077 SAMN13169025
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HGDP-CEPH-db Supplement 1 Europe Sub 320 C=0.853 A=0.147 SAMN13169024
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HGDP-CEPH-db Supplement 1 Africa Sub 242 C=0.921 A=0.079 SAMN13169020
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HGDP-CEPH-db Supplement 1 America Sub 216 C=0.810 A=0.190 SAMN13169021
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HGDP-CEPH-db Supplement 1 Oceania Sub 72 C=1.00 A=0.00 SAMN13169026
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HapMap Global Study-wide 1888 C=0.8851 A=0.1149 PRJNA60817 SAMN10820145
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HapMap American Sub 766 C=0.859 A=0.141 SAMN10821182
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HapMap African Sub 692 C=0.923 A=0.077 SAMN10821181
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HapMap Asian Sub 254 C=0.902 A=0.098 SAMN10821184
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HapMap Europe Sub 176 C=0.824 A=0.176 SAMN10821183
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Korean Genome Project KOREAN Study-wide 1832 C=0.8777 A=0.1223 PRJNA609628
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Genome-wide autozygosity in Daghestan Global Study-wide 1134 C=0.8668 A=0.1332 PRJNA576826 SAMN13013121
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Genome-wide autozygosity in Daghestan Daghestan Sub 626 C=0.867 A=0.133 SAMN13013126
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Genome-wide autozygosity in Daghestan Near_East Sub 144 C=0.819 A=0.181 SAMN13013123
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Genome-wide autozygosity in Daghestan Central Asia Sub 122 C=0.869 A=0.131 SAMN13013124
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Genome-wide autozygosity in Daghestan Europe Sub 108 C=0.843 A=0.157 SAMN13013127
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Genome-wide autozygosity in Daghestan South Asian Sub 98 C=0.92 A=0.08 SAMN13013122
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Genome-wide autozygosity in Daghestan Caucasus Sub 36 C=0.97 A=0.03 SAMN13013125
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Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 C=0.865 A=0.135 PRJEB5829 SAMN13000132
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Northern Sweden ACPOP Study-wide 600 C=0.793 A=0.207 PPRJNA503394 SAMN10359154
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Medical Genome Project healthy controls from Spanish population Spanish controls Study-wide 534 C=0.835 A=0.165 PRJEB8705 SAMN13001620
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Qatari Global Study-wide 216 C=0.935 A=0.065 PRJNA288297 SAMN13019808
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A Vietnamese Genetic Variation Database Global Study-wide 210 C=0.886 A=0.114 PRJNA515199 SAMN10744005
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SGDP_PRJ Global Study-wide 102 C=0.422 A=0.578 PRJNA586841
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Ancient Sardinia genome-wide 1240k capture data generation and analysis Global Study-wide 80 C=0.82 A=0.17 PRJEB36033 SAMN15458807
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The Danish reference pan genome Danish Study-wide 40 C=0.85 A=0.15 PRJEB7725 SAMN13003120
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Siberian Global Study-wide 16 C=0.50 A=0.50 PRJNA267856 SAMN13113809
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