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<h1 class="h2 p-0 m-0"> Dosage Sensitivity</h1>
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<span class="text-danger"><b>NOTICE:</b></span>
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The standalone region search field specific to Dosage Sensitivity has been fully integrated with the <u>main search bar above</u> <i class="fas fa-arrow-up"></i>.
|
|
To use, first select Region (GRCh37) or Region (GRCh38) from the pull-down menu, enter the genomic coordinates as before, then click on the 'Search' button.
|
|
Once your results display, you can view additional information relative to Dosage Sensitivity by clicking on the 'Dosage Scores' display option.
|
|
For more information, refer to the <a href="https://www.clinicalgenome.org/site/assets/files/9582/r1_10_release_notes.pdf" target="_notes"><u>release notes.</u></a>
|
|
</p>
|
|
<p>
|
|
Note that the search box below <i class="fas fa-arrow-down"></i> only searches for text within the displayed table; do not use this to search for all genes within a range of genomic coordinates.
|
|
</p>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="col-md-12">
|
|
<button type="button" class="btn-link p-0 m-0" data-toggle="modal" data-target="#modalFilter">
|
|
<span class="text-muted font-weight-bold mr-1"><small><i class="glyphicon glyphicon-tasks" style="top: 2px"></i> Advanced Filters: </small></span><span class="filter-container"><span class="badge action-af-badge">None</span></span>
|
|
</button>
|
|
<span class="text-info font-weight-bold mr-1 float-right action-hidden-columns hidden"><small>Click on <i class="glyphicon glyphicon-th icon-th" style="top: 2px"></i> below to view hidden columns</small></span>
|
|
|
|
</div>
|
|
|
|
<div class="col-md-12 light-arrows dark-table dark-detail">
|
|
|
|
<!-- The toolbar -->
|
|
<div id="toolbar">
|
|
|
|
</div>
|
|
<!-- The table -->
|
|
<table
|
|
id="table"
|
|
data-classes="table"
|
|
data-toolbar="#toolbar"
|
|
data-addrbar="true"
|
|
data-search="true"
|
|
|
|
data-filter-control="true"
|
|
data-filter-control-visible="false"
|
|
data-id-table="advancedTable"
|
|
data-search-align="left"
|
|
data-trim-on-search="true"
|
|
data-show-search-clear-button="true"
|
|
data-buttons="table_buttons"
|
|
|
|
|
|
data-show-align="left"
|
|
data-show-fullscreen="true"
|
|
data-show-columns="true"
|
|
data-show-columns-toggle-all="true"
|
|
data-search-formatter="false"
|
|
data-show-export="true"
|
|
data-export-types="['json', 'xml', 'csv', 'txt', 'sql', 'xlsx', 'pdf']"
|
|
|
|
data-detail-view="true"
|
|
|
|
data-detail-view-by-click="true"
|
|
data-detail-view-icon="true"
|
|
|
|
data-minimum-count-columns="2"
|
|
|
|
data-pagination="true"
|
|
data-id-field="id"
|
|
data-ajax-options="ajaxOptions"
|
|
data-page-list="[10, 25, 50, 100, 250, all]"
|
|
data-page-size="25"
|
|
data-show-footer="true"
|
|
data-side-pagination="client"
|
|
data-pagination-v-align="both"
|
|
data-show-extended-pagination="false"
|
|
data-url="/api/dosage"
|
|
data-query-params="queryParams"
|
|
data-response-handler="responseHandler"
|
|
data-header-style="headerStyle"
|
|
data-show-filter-control-switch="true"
|
|
data-group-by="true"
|
|
data-group-by-field="pheno">
|
|
</table>
|
|
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
|
|
|
|
|
|
<div class="modal" id="modalFilter" tabindex="-1" role="dialog" aria-labelledby="modalFilterTitle" aria-hidden="true">
|
|
<div class="modal-dialog modal-lg modal-dialog-centered" role="document">
|
|
<div class="modal-content">
|
|
<div class="modal-header">
|
|
<h5 class="modal-title" id="modalFilterTitle">Advanced Filters</h5>
|
|
</div>
|
|
<div class="modal-body">
|
|
<p>Select the appropriate view filters to modify the displayed rows: </p>
|
|
<input type="hidden" name="_token" value="cQDtFK9v0wYGJfPmhVUB2MJPSYBLyIZD8SdCFTrx"> <input type="hidden" name="ident" value="">
|
|
<div class="form-group row bg-light border-1 border-muted ml-2 mr-2 p-2">
|
|
<!--<label for="gene" class="col-sm-6 ml-5 col-form-label">Show Genes</label>
|
|
<div class="col-sm-4">
|
|
<div class="form-inline p-0 m-0 col-sm-12">
|
|
<i class="fas fa-toggle-on fa-lg action-show-genes"></i>
|
|
<span class="ml-4 hgnc text-muted action-show-genes-text">On</span>
|
|
</div>
|
|
</div>
|
|
<label for="gene" class="col-sm-6 ml-5 col-form-label">Show Regions</label>
|
|
<div class="col-sm-4">
|
|
<div class="form-inline p-0 m-0 col-sm-12">
|
|
<i class="fas fa-toggle-on fa-lg action-show-regions"></i>
|
|
<span class="ml-4 hgnc text-muted action-show-regions-text">On</span>
|
|
</div>
|
|
</div>-->
|
|
<label for="gene" class="col-sm-8 ml-5 col-form-label">Show only Genes/Regions with HI Score 3 (Sufficient Evidence) </label>
|
|
<div class="col-sm-3">
|
|
<div class="form-inline p-0 m-0 col-sm-12">
|
|
<i class="fas fa-toggle-off fa-lg advanced-filter action-show-hiknown" data-badge="Known HI"></i>
|
|
<span class="ml-2 hgnc text-muted action-show-hiknown-text">Off</span>
|
|
</div>
|
|
</div>
|
|
<label for="gene" class="col-sm-8 ml-5 col-form-label">Show only Genes/Regions with TS Score 3 (Sufficient Evidence) </label>
|
|
<div class="col-sm-3">
|
|
<div class="form-inline p-0 m-0 col-sm-12">
|
|
<i class="fas fa-toggle-off fa-lg advanced-filter action-show-tsknown" data-badge="Known TS"></i>
|
|
<span class="ml-2 hgnc text-muted action-show-tsknown-text">Off</span>
|
|
</div>
|
|
</div>
|
|
<label for="gene" class="col-sm-8 ml-5 col-form-label">Show only Genes/Regions with TS Score 3 <u>or</u> HI Score 3 </label>
|
|
<div class="col-sm-3">
|
|
<div class="form-inline p-0 m-0 col-sm-12">
|
|
<i class="fas fa-toggle-off fa-lg advanced-filter action-show-hitsknown" data-badge="Known HI or TS"></i>
|
|
<span class="ml-2 hgnc text-muted action-show-hitsknown-text">Off</span>
|
|
</div>
|
|
</div>
|
|
<label for="gene" class="col-sm-8 ml-5 col-form-label">Show only Genes/Regions with scores changed in the past year </label>
|
|
<div class="col-sm-3">
|
|
<div class="form-inline p-0 m-0 col-sm-12">
|
|
<i class="fas fa-toggle-off fa-lg advanced-filter action-show-new" data-badge="Score Change 365"></i>
|
|
<span class="ml-2 hgnc text-muted action-show-new-text">Off</span>
|
|
</div>
|
|
</div>
|
|
<label for="gene" class="col-sm-8 ml-5 col-form-label">Show only Genes/Regions reviewed in the past 90 days</label>
|
|
<div class="col-sm-3">
|
|
<div class="form-inline p-0 m-0 col-sm-12">
|
|
<i class="fas fa-toggle-off fa-lg advanced-filter action-show-recent" data-badge="Show Recent"></i>
|
|
<span class="ml-2 hgnc text-muted action-show-recent-text">Off</span>
|
|
</div>
|
|
</div>
|
|
<label for="gene" class="col-sm-8 ml-5 col-form-label">Show only Protein-Coding Genes</label>
|
|
<div class="col-sm-3">
|
|
<div class="form-inline p-0 m-0 col-sm-12">
|
|
<i class="fas fa-toggle-off fa-lg advanced-filter action-show-protein" data-badge="Protein Coding"></i>
|
|
<span class="ml-2 hgnc text-muted action-show-protein-text">Off</span>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
<div class="modal-footer">
|
|
<!--<button type="submit" class="btn btn-primary mr-auto">Submit
|
|
</button> -->
|
|
<button type="button" class="btn btn-outline-secondary" data-dismiss="modal" aria-label="Close">
|
|
Close
|
|
</button>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
<div class="modal" id="modalBookmark" tabindex="-1" role="dialog" aria-labelledby="modalBookmarkTitle" aria-hidden="true">
|
|
<div class="modal-dialog modal-dialog-centered" role="document">
|
|
<div class="modal-content">
|
|
<div class="modal-header section-heading-groups">
|
|
<button type="button" class="close text-white" data-dismiss="modal" aria-label="Close">
|
|
<span aria-hidden="true">×</span>
|
|
</button>
|
|
<h3 class="modal-title text-white" id="modalBookmarkTitle">Manage Page Preferences</h3>
|
|
</div>
|
|
<div class="alert alert-warning mb-0" role="alert">
|
|
<b>Page Preferences</b> allow you to save and restore individual settings to your preference.
|
|
Currently this <b>new feature</b> allows you to manage table page number, table page size, table search string,
|
|
and table column sort order. Future releases will also manage advanced filters, column layout, and column search settings.
|
|
</div>
|
|
<div class="modal-body">
|
|
<div class="row">
|
|
<div class="col-md-12">
|
|
<form class="form-horizontal" role="form">
|
|
<input type="hidden" name="_token" value="cQDtFK9v0wYGJfPmhVUB2MJPSYBLyIZD8SdCFTrx"> <fieldset>
|
|
|
|
<!-- Text input-->
|
|
<div class="form-group">
|
|
<h5 class="col-sm-11"><b>Dosage Sensitivity Page</b></h5>
|
|
</div>
|
|
|
|
<!-- Text input-->
|
|
<div class="form-group">
|
|
<label class="col-sm-6 control-label" for="textinput">Current Selected Preference:</label>
|
|
<div class="col-sm-5 pt-2">
|
|
<span id="modal-current-bookmark">No Preferences Selected</span>
|
|
</div>
|
|
</div>
|
|
|
|
<hr />
|
|
|
|
<p>Manage all your preferences for this page my selecting from the "Choose Preference" list, select an action, then click on "Go!".
|
|
</p>
|
|
<div class="row">
|
|
<div class="col-sm-12">
|
|
<div class="input-group">
|
|
<div class="input-group-btn">
|
|
<button type="button" class="btn btn-default dropdown-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Choose Preference </button>
|
|
<ul id="preferences-menu" class="dropdown-menu dropdown-menu-right">
|
|
</ul>
|
|
</div><!-- /btn-group -->
|
|
<input id="bookmark-selected-preference" type="text" class="form-control" aria-label="" value="" readonly>
|
|
<div class="input-group-btn">
|
|
<button type="button" class="rounded-0 btn btn-default dropdown-toggle bookmark-action-select" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false"><span id="button-selected-action">Action </span> </button>
|
|
<ul class="dropdown-menu dropdown-menu-right">
|
|
<li><a href="#" class="bookmark-modal-select action-restore-bookmark" data-action="select"><i class="fas fa-check"></i> Select </a></li>
|
|
<li><a href="#" class="bookmark-modal-select action-default-bookmark" data-action="default"><i class="fas fa-asterisk"></i> Make Default </a></li>
|
|
<li><a href="#" class="bookmark-modal-select action-update-bookmark" data-action="update"><i class="far fa-edit"></i> Update </a></li>
|
|
<li role="separator" class="divider"></li>
|
|
<li><a href="#" class="bookmark-modal-select action-remove-bookmark" data-action="remove"><i class="far fa-trash-alt"></i> Delete </a></li>
|
|
</ul>
|
|
</div><!-- /btn-group -->
|
|
<div class="input-group-btn">
|
|
<button type="button" class="btn btn-primary bookmark-action-go">Go!</button>
|
|
</div>
|
|
</div><!-- /input-group -->
|
|
</div><!-- /.col-sm-10 -->
|
|
|
|
</div><!-- /.row -->
|
|
|
|
<hr />
|
|
|
|
<p>To create a new preference comprised of the current settings, first enter a unique name, then click on "Go!".</p>
|
|
<div class="input-group">
|
|
<span class="input-group-addon" id="sizing-addon2">Preference Name:</span>
|
|
<input type="text" class="form-control" id="modal-new-bookmark" name="newbookmark" placeholder="Enter a name" aria-describedby="sizing-addon2">
|
|
<span class="input-group-btn">
|
|
<button class="btn btn-primary action-save-bookmark" type="button">Go!</button>
|
|
</span>
|
|
</div>
|
|
|
|
</fieldset>
|
|
</form>
|
|
</div><!-- /.col-lg-12 -->
|
|
</div><!-- /.row -->
|
|
</div>
|
|
<div class="modal-footer">
|
|
<div id="modal-bookmark-status" class="text-danger pull-left"> </div>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="modal" id="modalLogin" tabindex="-1" data-backdrop="static" role="dialog" aria-labelledby="modalLoginTitle" aria-hidden="true">
|
|
<div class="modal-dialog modal-dialog-centered modal-lg" role="document">
|
|
<div class="modal-content">
|
|
<div class="modal-body p-0">
|
|
<div class="card login-card">
|
|
<div class="row no-gutters">
|
|
<div class="col-md-4 hidden-sm hidden-xs">
|
|
<img src="/assets/images/dna_spiral.jpg" alt="login" style="width:100%; height: 520px; object-fit: cover;">
|
|
</div>
|
|
<div class="col-md-8">
|
|
<button type="button" class="close mr-4 mt-4" data-dismiss="modal" aria-label="Close">
|
|
<span aria-hidden="true"><i class="far fa-times-circle"></i></span>
|
|
</button>
|
|
<div class="card-body pt-0">
|
|
<div class="brand-wrapper">
|
|
<img src="/assets/images/clingen_logo.png" alt="logo" style="height:140px">
|
|
</div>
|
|
<p class="login-card-description"><b>My Account</b></p>
|
|
<form action="/login" method="POST" id="login-form">
|
|
<input type="hidden" name="_token" value="cQDtFK9v0wYGJfPmhVUB2MJPSYBLyIZD8SdCFTrx"> <input type="hidden" id="login-context-value" name="context" value="">
|
|
<div class="form-group row">
|
|
<label for="email" class="sr-only">Email</label>
|
|
<input type="email" name="email" id="email" class="form-control" placeholder="Email address">
|
|
</div>
|
|
<div class="form-group mb-0 row">
|
|
<label for="password" class="sr-only">Password</label>
|
|
<input type="password" name="password" id="password" class="form-control mb-1" placeholder="Password">
|
|
</div>
|
|
<div class="form-group row">
|
|
<div class="col-md-6">
|
|
<div class="form-check">
|
|
<input class="form-check-input" type="checkbox" name="remember_me" id="remember" value="1" >
|
|
<label class="form-check-label" for="remember_me">
|
|
Remember Me
|
|
</label>
|
|
</div>
|
|
</div>
|
|
<div class="col-md-6">
|
|
<a href="#!" class="forgot-password-link float-right action-login-forgot">Forgot password?</a>
|
|
</div>
|
|
</div>
|
|
<div class="form-group row">
|
|
<div class="col-md-3">
|
|
<button type="submit" class="btn login-btn mb-4">Login</button>
|
|
</div>
|
|
<div class="col-md-9">
|
|
<!--<div class="d-flex justify-content-center social-buttons mt-1">
|
|
or login with
|
|
<button type="button" class="btn btn-secondary btn-round" data-toggle="tooltip" data-placement="top" title="Twitter">
|
|
<i class="fab fa-twitter fa-2x"></i>
|
|
</button>
|
|
<button type="button" class="btn btn-secondary btn-round" data-toggle="tooltip" data-placement="top" title="Facebook">
|
|
<i class="fab fa-facebook fa-2x"></i>
|
|
</button>
|
|
<button type="button" class="btn btn-secondary btn-round" data-toggle="tooltip" data-placement="top" title="Linkedin">
|
|
<i class="fab fa-linkedin fa-2x"></i>
|
|
</button>
|
|
<button type="button" class="btn btn-secondary btn-round" data-toggle="tooltip" data-placement="top" title="google">
|
|
<i class="fab fa-google-plus-square fa-2x"></i>
|
|
</button>
|
|
</div>-->
|
|
</div>
|
|
</div>
|
|
</form>
|
|
<p class="login-card-footer-text mb-0">Don't have a ClinGen account? <a href="#!" class="text-reset action-login-register"><strong><i>Register Here</i></strong></a></p>
|
|
<!--<nav class="login-card-footer-nav">
|
|
<a href="#!">Terms of use.</a>
|
|
<a href="#!">Privacy policy</a>
|
|
</nav>-->
|
|
</div>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
</div>
|
|
</div>
|
|
</div>
|
|
</div> <div class="modal" id="modalRegister" tabindex="-1" data-backdrop="static" role="dialog" aria-labelledby="modalRegisterTitle" aria-hidden="true">
|
|
<div class="modal-dialog modal-dialog-centered modal-lg" role="document">
|
|
<div class="modal-content">
|
|
<div class="modal-body p-0">
|
|
<div class="card login-card">
|
|
<div class="row no-gutters">
|
|
<div class="col-md-4 hidden-sm hidden-xs">
|
|
<img src="/assets/images/dna_spiral.jpg" alt="login" style="width:100%; height: 660px; object-fit: cover;">
|
|
</div>
|
|
<div class="col-md-8">
|
|
<button type="button" class="close mr-4 mt-4" data-dismiss="modal" aria-label="Close">
|
|
<span aria-hidden="true"><i class="far fa-times-circle"></i></span>
|
|
</button>
|
|
<div class="card-body pt-0">
|
|
<div class="brand-wrapper">
|
|
<img src="/assets/images/clingen_logo.png" alt="logo" style="height:140px">
|
|
</div>
|
|
<p class="login-card-description"><b>Create Acount</b></p>
|
|
<form action="/register" method="POST" id="register-form" class="form-horizontal">
|
|
<input type="hidden" name="_token" value="cQDtFK9v0wYGJfPmhVUB2MJPSYBLyIZD8SdCFTrx"> <input type="hidden" id="register-context-value" name="context" value="">
|
|
<div class="form-group row">
|
|
<div class="col-sm-6">
|
|
<label for="firstname" class="sr-only">First Name</label>
|
|
<input type="text" name="firstname" class="form-control" placeholder="First Name">
|
|
</div>
|
|
<div class="col-sm-6">
|
|
<label for="lastname" class="sr-only">Last Name</label>
|
|
<input type="text" name="lastname" class="form-control" placeholder="Last Name">
|
|
</div>
|
|
</div>
|
|
<div class="form-group row">
|
|
<div class="col-sm-12">
|
|
<label for="organization" class="sr-only">Organization (Optional)</label>
|
|
<input type="text" name="organization" class="form-control" placeholder="Organization (optional)">
|
|
</div>
|
|
</div>
|
|
<div class="form-group row">
|
|
<div class="col-sm-12">
|
|
<label for="email" class="sr-only">Email</label>
|
|
<input type="email" name="email" class="form-control" placeholder="Email">
|
|
</div>
|
|
</div>
|
|
<div class="form-group row">
|
|
<div class="col-sm-6">
|
|
<label for="password" class="sr-only">Password</label>
|
|
<input type="password" id="register-password" name="password" class="form-control" placeholder="Password">
|
|
</div>
|
|
<div class="col-sm-6">
|
|
<label for="password_confirmation" class="sr-only">Confirm Password</label>
|
|
<input type="password" name="password_confirmation" class="form-control" placeholder="Confirm Password">
|
|
</div>
|
|
</div>
|
|
<div class="form-group row">
|
|
<div class="col-md-6">
|
|
<button type="submit" class="btn login-btn mb-4">Register</button>
|
|
</div>
|
|
</div>
|
|
</form>
|
|
<p class="login-card-footer-text mb-0">Already have an account? <a href="#!" class="text-reset action-register-login"><strong><i>Login Here</i></strong></a></p>
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<a class='text-dark small' href='https://www.clinicalgenome.org/curation-activities/results/'><span class='d-inline-block text-truncate'>Browse All ClinGen's Curated Genes</span></a>
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<a class='' href='https://www.clinicalgenome.org/working-groups/'><h6>Working Groups</h6></a>
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<!--<li class='col-md-6 text-truncate'>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/copy-number-variant-interpretation-guidelines/'><span class='d-inline-block text-truncate'>Copy Number Variant Interpretation Guidelines</span></a>
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<a class='text-dark small' href='https://clinicalgenome.org/working-groups/data-access-protection-and-confidentiality/'><span class='d-inline-block text-truncate'>Data Access, Protection, and Confidentiality</span></a>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/data-platform/'><span class='d-inline-block text-truncate'>Data Platform</span></a>
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<!--<li class='col-md-6 text-truncate '>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/disease-naming-advisory-committee/'><span class=' d-inline-block text-truncate'> Disease Naming Advisory Committee</span></a>
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<li class='col-md-6 text-truncate'>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/dosage-sensitivity-curation/'><span class='d-inline-block text-truncate'>Dosage Sensitivity Curation</span></a>
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</li>
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<li class='col-md-6 text-truncate'>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/education-engagement-and-counseling/'><span class='d-inline-block text-truncate'>Education, Coordination and Training</span></a>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/external-scientific-panel/'><span class='d-inline-block text-truncate'>External Scientific Panel</span></a>
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<li class='col-md-6 text-truncate'>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/gene-curation/'><span class='d-inline-block text-truncate'>Gene Curation</span></a>
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</li>
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<!-- <li class='col-md-6 text-truncate'>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/genomic-variant-workgroup/'><span class='d-inline-block text-truncate'>Genomic Variant</span></a>
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</li> -->
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/low-penetrance-risk-allele-working-group/'><span class='d-inline-block text-truncate'>Low Penetrance/Risk Allele Working Group</span></a>
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</li>
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<a class='text-dark small' href='https://clinicalgenome.org/working-groups/partnership/'><span class='d-inline-block text-truncate'>Partnership</span></a>
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</li>
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<!-- <li class='col-md-6 text-truncate'>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/lumping-and-splitting/'><span class='d-inline-block text-truncate'>Lumping and Splitting</span></a>
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</li> -->
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<li class='col-md-6 text-truncate '>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/pharmacogenomics/'><span class=' d-inline-block text-truncate'> Pharmacogenomics Intrepretation Committee</span></a>
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<li class='col-md-6 text-truncate '>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/pseudodeficiency-working-group/'><span class=' d-inline-block text-truncate'> Pseudodeficiency Working Group</span></a>
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</li>
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<!-- <li class='col-md-6 text-truncate'>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/sequence-variant-inter-laboratory-discrepancy-resolution/'><span class='d-inline-block text-truncate'>Sequence Variant Inter-Laboratory Discrepancy Resolution</span></a>
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</li> -->
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<li class='col-md-6 text-truncate'>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/sequence-variant-interpretation/'><span class='d-inline-block text-truncate'>Sequence Variant Interpretation</span></a>
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</li>
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<li class='col-md-6 text-truncate'>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/somatic-germline-variant-curation/'><span class='d-inline-block text-truncate'>Germline/Somatic Working Group</span></a>
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</li>
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<!-- <li class='col-md-6 text-truncate'>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/stakeholder-partnership/'><span class='d-inline-block text-truncate'>Stakeholder Partnership</span></a>
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</li> -->
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<li class='col-md-6 text-truncate'>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/steering-committee/'><span class='d-inline-block text-truncate'>Steering Committee</span></a>
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<a class='text-dark small' href='https://www.clinicalgenome.org/working-groups/variant-curation-workgroup/'><span class='d-inline-block text-truncate'>Variant Curation</span></a>
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</ul>
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<hr />
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</div>
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<div class="col-12">
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<a class="" href="https://clinicalgenome.org/affiliation/"><h6>Expert Panels</h6></a>
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<ul class="list-unstyled row">
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50048/"><span class=" d-inline-block ">ACADVL Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40011/"><span class=" d-inline-block ">Aminoacidopathy Gene Curation Expert Panel</span></a>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40003/"><span class=" d-inline-block ">Arrhythmogenic Right Ventricular Cardiomyopathy Gene Curation Expert Panel</span></a>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40020/"><span class=" d-inline-block ">Brain Malformations Gene Curation Expert Panel</span></a>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50020/"><span class=" d-inline-block ">Brain Malformations Variant Curation Expert Panel</span></a>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40042/"><span class=" d-inline-block ">Breast/Ovarian Cancer Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40045/"><span class=" d-inline-block ">Brugada Syndrome Gene Curation Expert Panel</span></a>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50002/"><span class=" d-inline-block ">Cardiomyopathy Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50014/"><span class=" d-inline-block ">CDH1 Variant Curation Expert Panel</span></a>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50047/"><span class=" d-inline-block ">Cerebral Creatine Deficiency Syndromes Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40063/"><span class=" d-inline-block ">Charcot-Marie-Tooth Disease Gene Curation Expert Panel</span></a>
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</li>
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50041/"><span class=" d-inline-block ">Coagulation Factor Deficiency Variant Curation Expert Panel</span></a>
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</li>
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40043/"><span class=" d-inline-block ">Colon Cancer Gene Curation Expert Panel</span></a>
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</li>
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40031/"><span class=" d-inline-block ">Congenital Myopathies Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50031/"><span class=" d-inline-block ">Congenital Myopathies Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40059/"><span class=" d-inline-block ">Craniofacial Malformations Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50050/"><span class=" d-inline-block ">DICER1 and miRNA-Processing Gene Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40035/"><span class=" d-inline-block ">Dilated Cardiomyopathy Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40005/"><span class=" d-inline-block ">Epilepsy Gene Curation Expert Panel</span></a>
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</li>
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50004/"><span class=" d-inline-block ">Familial Hypercholesterolemia Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40044/"><span class=" d-inline-block ">Familial Thoracic Aortic Aneurysm and Dissection Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40010/"><span class=" d-inline-block ">Fatty Acid Oxidation Disorders Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50046/"><span class=" d-inline-block ">FBN1 Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40026/"><span class=" d-inline-block ">General Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50053/"><span class=" d-inline-block ">Glaucoma Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50078/"><span class=" d-inline-block ">GRIN Disorders Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40007/"><span class=" d-inline-block ">Hearing Loss Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50007/"><span class=" d-inline-block ">Hearing Loss Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50052/"><span class=" d-inline-block ">Hemoglobinopathy Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40028/"><span class=" d-inline-block ">Hemostasis/Thrombosis Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50039/"><span class=" d-inline-block ">Hereditary Breast, Ovarian and Pancreatic Cancer Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40023/"><span class=" d-inline-block ">Hereditary Cancer Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50037/"><span class=" d-inline-block ">Hereditary Hemorrhagic Telangiectasia Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40080/"><span class=" d-inline-block ">Humoral Defects Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40008/"><span class=" d-inline-block ">Hypertrophic Cardiomyopathy Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40006/"><span class=" d-inline-block ">Intellectual Disability and Autism Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50001/"><span class=" d-inline-block ">KCNQ1 Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40066/"><span class=" d-inline-block ">Kidney Cystic and Ciliopathy Disorders Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50066/"><span class=" d-inline-block ">Kidney Cystic and Ciliopathy Disorders Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50082/"><span class=" d-inline-block ">Leber Congenital Amaurosis/early onset Retinal Dystrophy Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40061/"><span class=" d-inline-block ">Limb Girdle Muscular Dystrophy Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50061/"><span class=" d-inline-block ">Limb Girdle Muscular Dystrophy Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40025/"><span class=" d-inline-block ">Long QT Syndrome Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50009/"><span class=" d-inline-block ">Lysosomal Storage Disorders Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50038/"><span class=" d-inline-block ">Malignant Hyperthermia Susceptibility Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50027/"><span class=" d-inline-block ">Mitochondrial Disease Nuclear and Mitochondrial Variant Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40027/"><span class=" d-inline-block ">Mitochondrial Diseases Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40016/"><span class=" d-inline-block ">Monogenic Diabetes Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50016/"><span class=" d-inline-block ">Monogenic Diabetes Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50034/"><span class=" d-inline-block ">Myeloid Malignancy Variant Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50089/"><span class=" d-inline-block ">NTRK Fusions Somatic Cancer Variant Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40079/"><span class=" d-inline-block ">Parkinson's Disease Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40049/"><span class=" d-inline-block ">Peroxisomal Disorders Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50049/"><span class=" d-inline-block ">Peroxisomal Disorders Variant Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50015/"><span class=" d-inline-block ">Phenylketonuria Variant Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50040/"><span class=" d-inline-block ">Platelet Disorders Variant Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50012/"><span class=" d-inline-block ">PTEN Variant Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40071/"><span class=" d-inline-block ">Pulmonary Hypertension Gene Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
|
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40021/"><span class=" d-inline-block ">RASopathy Gene Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
|
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50021/"><span class=" d-inline-block ">RASopathy Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40072/"><span class=" d-inline-block ">Retina Gene Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
|
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50022/"><span class=" d-inline-block ">Rett and Angelman-like Disorders Variant Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40081/"><span class=" d-inline-block ">SCID-CID Gene Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40065/"><span class=" d-inline-block ">Skeletal Disorders Gene Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/40060/"><span class=" d-inline-block ">Syndromic Disorders Gene Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50064/"><span class=" d-inline-block ">Thrombosis Variant Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50013/"><span class=" d-inline-block ">TP53 Variant Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50036/"><span class=" d-inline-block ">VHL Variant Curation Expert Panel</span></a>
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50051/"><span class=" d-inline-block ">von Willebrand Disease Variant Curation Expert Panel</span></a>
|
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</li>
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<li class="col-md-6 text-truncate">
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<a class="text-dark small" href="https://clinicalgenome.org/affiliation/50086/"><span class=" d-inline-block ">X-linked Inherited Retinal Disease Variant Curation Expert Panel</span></a>
|
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</li>
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</ul>
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<hr>
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<a class='' href='https://www.clinicalgenome.org/docs/'><h6>Documents & Announcements</h6></a>
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<a class='text-dark small' href='https://www.clinicalgenome.org/docs/?doc-type=training-materials#list_documentation_table'><span class=' d-inline-block text-truncate'>Training Materials</span></a>
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|
}
|
|
}
|
|
});
|
|
|
|
</script>
|
|
|
|
|
|
<script src="/js/tableExport.min.js"></script>
|
|
<script src="/js/jspdf.min.js"></script>
|
|
<script src="/js/xlsx.core.min.js"></script>
|
|
<script src="/js/jspdf.plugin.autotable.js"></script>
|
|
|
|
<script src="/js/bootstrap-table.min.js"></script>
|
|
<script src="/js/bootstrap-table-locale-all.min.js"></script>
|
|
<script src="/js/bootstrap-table-export.min.js"></script>
|
|
|
|
<script src="/js/sweetalert.min.js"></script>
|
|
|
|
<script src="/js/bootstrap-table-filter-control.js"></script>
|
|
<script src="/js/bootstrap-table-sticky-header.min.js"></script>
|
|
|
|
<!-- load up all the local formatters and stylers -->
|
|
<script src="/js/genetable.js"></script>
|
|
<script src="/js/filters.js"></script>
|
|
<script src="/js/bookmark.js"></script>
|
|
|
|
<script>
|
|
/**
|
|
**
|
|
** Globals
|
|
**
|
|
*/
|
|
|
|
var $table = $('#table');
|
|
var showadvanced = true;
|
|
var report = "https://dosage.clinicalgenome.org/clingen_gene.cgi?sym=";
|
|
window.scrid = 5;
|
|
window.token = "cQDtFK9v0wYGJfPmhVUB2MJPSYBLyIZD8SdCFTrx";
|
|
|
|
window.ajaxOptions = {
|
|
beforeSend: function (xhr) {
|
|
if (Cookies.get('clingen_dash_token') != undefined)
|
|
xhr.setRequestHeader('Authorization', 'Bearer ' + Cookies.get('clingen_dash_token'))
|
|
}
|
|
}
|
|
|
|
/**
|
|
*
|
|
* Table response handler for updating page counters after data load
|
|
*
|
|
* */
|
|
function responseHandler(res) {
|
|
|
|
// update the counters
|
|
$('.countCurations').html(res.ncurations);
|
|
$('.countGenes').html(res.ngenes);
|
|
$('.countRegions').html(res.nregions);
|
|
return res
|
|
}
|
|
|
|
var choices=['Yes', 'No'];
|
|
|
|
var hibin=['<= 10%', '<= 25%', '<= 50%', '<= 75%'];
|
|
var plibin=['< 0.9', '>= 0.9'];
|
|
var plofbin=['< 0.6', '>= 0.6'];
|
|
|
|
// HI bin
|
|
function checkbin(text, value, field, data)
|
|
{
|
|
switch (text)
|
|
{
|
|
case '<= 10%':
|
|
return value <= 10;
|
|
case '<= 25%':
|
|
return value <= 25;
|
|
case '<= 50%':
|
|
return value <= 50;
|
|
case '<= 75%':
|
|
return value <= 75;
|
|
default:
|
|
return true;
|
|
}
|
|
}
|
|
|
|
|
|
function checkpli(text, value, field, data)
|
|
{
|
|
if (text == '< .9')
|
|
return value < .9;
|
|
else
|
|
return value >= .9;
|
|
}
|
|
|
|
|
|
function checkplof(text, value, field, data)
|
|
{
|
|
switch (text)
|
|
{
|
|
case '< 0.6':
|
|
return value < .6;
|
|
case '>= 0.6':
|
|
return value >= .6;
|
|
default:
|
|
return true;
|
|
}
|
|
}
|
|
|
|
var tripChoices=[
|
|
'No Evidence',
|
|
'1 (Little Evidence)',
|
|
'2 (Emerging Evidence)',
|
|
'3 (Sufficient Evidence)',
|
|
'30 (Autosomal Recessive)',
|
|
'40 (Dosage Sensitivity Unlikely)',
|
|
'Not Yet Evaluated',
|
|
];
|
|
/*var hapChoices=[
|
|
'No Evidence' => 0,
|
|
'Little Evidence' => 1,
|
|
'Emerging Evidence' => 2,
|
|
'Sufficient Evidence' => 3,
|
|
'Autosomal Recessive' => 30,
|
|
'Dosage Sensitivity Unlikely' => 40,
|
|
'Not Yet Evaluated' => -1,
|
|
];*/
|
|
|
|
var hapChoices= {
|
|
'0': 'No Evidence',
|
|
'1': 'Little Evidence',
|
|
'2': 'Emerging Evidence',
|
|
'3': 'Sufficient Evidence',
|
|
'30': 'Autosomal Recessive',
|
|
'40': 'Dosage Sensitivity Unlikely',
|
|
'-5': 'Not Yet Evaluated',
|
|
};
|
|
|
|
|
|
var omimcomboChoices= {
|
|
1: 'OMIM Only',
|
|
2: 'Morbid Only',
|
|
3: 'Both OMIM and Morbid'
|
|
};
|
|
|
|
function inittable() {
|
|
$table.bootstrapTable('destroy').bootstrapTable({
|
|
stickyHeader: true,
|
|
stickyHeaderOffsetLeft: parseInt($('body').css('padding-left'), 10),
|
|
stickyHeaderOffsetRight: parseInt($('body').css('padding-right'), 10),
|
|
locale: 'en-US',
|
|
sortName: "symbol",
|
|
sortOrder: "asc",
|
|
filterControlVisible: false,
|
|
rowStyle: function(row, index) {
|
|
if (index % 2 === 0) {
|
|
return {
|
|
classes: 'bt-even-row2 bt-hover-row'
|
|
}
|
|
}
|
|
else {
|
|
return {
|
|
classes: 'bt-odd-row2 bt-hover-row'
|
|
}
|
|
}
|
|
},
|
|
columns: [
|
|
{
|
|
title: 'Type',
|
|
field: 'type',
|
|
formatter: relationFormatter,
|
|
cellStyle: cellFormatter,
|
|
//formatter: nullFormatter,
|
|
//cellStyle: typeFormatter,
|
|
//filterControl: 'input',
|
|
width: 80,
|
|
searchFormatter: false,
|
|
sortable: true,
|
|
},
|
|
{
|
|
title: 'Gene Symbol /<div>Region Name</div>',
|
|
field: 'symbol',
|
|
formatter: symbol2Formatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'input',
|
|
width: 190,
|
|
searchFormatter: false,
|
|
sortable: true
|
|
},
|
|
{
|
|
title: 'HGNC/<br>Dosage ID',
|
|
field: 'hgnc_id',
|
|
formatter: hgncFormatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'input',
|
|
searchFormatter: false,
|
|
sortable: true,
|
|
visible: false
|
|
},
|
|
{
|
|
title: 'Cytoband',
|
|
field: 'location',
|
|
//formatter: locationFormatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'input',
|
|
searchFormatter: false,
|
|
visible: false,
|
|
sortable: true
|
|
},
|
|
{
|
|
title: 'GRCh37',
|
|
field: 'grch37',
|
|
formatter: locationFormatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'input',
|
|
sorter: locationSorter,
|
|
searchFormatter: false,
|
|
sortable: true
|
|
},
|
|
{
|
|
title: 'GRCh38',
|
|
field: 'grch38',
|
|
formatter: location38Formatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'input',
|
|
sorter: locationSorter,
|
|
searchFormatter: false,
|
|
visible: false,
|
|
sortable: true
|
|
},
|
|
{
|
|
title: '<div><i class="fas fa-info-circle color-white" data-toggle="tooltip" data-placement="top" title="Haploinsufficiency score"></i></div>HI Score',
|
|
field: 'haplo_assertion',
|
|
formatter: haplo2Formatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'select',
|
|
searchFormatter: false,
|
|
sorter: 'dosageSorter',
|
|
filterData: 'var:hapChoices',
|
|
filterDefault: "",
|
|
sortSelectOptione: false,
|
|
filterOrderBy: 'server',
|
|
filterStrictSearch: true,
|
|
sortable: true
|
|
},
|
|
{
|
|
title: 'Haplo Disease',
|
|
field: 'haplo_disease',
|
|
//formatter: haploFormatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'input',
|
|
searchFormatter: false,
|
|
sortable: true,
|
|
visible: false
|
|
},
|
|
{
|
|
title: 'Haplo Disease ID',
|
|
field: 'haplo_disease_id',
|
|
//formatter: haploFormatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'input',
|
|
searchFormatter: false,
|
|
sortable: true,
|
|
visible: false
|
|
},
|
|
{
|
|
title: '<div><i class="fas fa-info-circle color-white" data-toggle="tooltip" data-placement="top" title="Triplosensitivity score"></i></div>TS Score',
|
|
field: 'triplo_assertion',
|
|
formatter: triplo2Formatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'select',
|
|
searchFormatter: false,
|
|
sorter: 'dosageSorter',
|
|
filterData: 'var:hapChoices',
|
|
filterDefault: "",
|
|
filterStrictSearch: true,
|
|
sortable: true
|
|
},
|
|
{
|
|
title: 'Triplo Disease',
|
|
field: 'triplo_disease',
|
|
//formatter: haploFormatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'input',
|
|
searchFormatter: false,
|
|
sortable: true,
|
|
visible: false
|
|
},
|
|
{
|
|
title: 'Triplo Disease ID',
|
|
field: 'triplo_disease_id',
|
|
//formatter: haploFormatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'input',
|
|
searchFormatter: false,
|
|
sortable: true,
|
|
visible: false
|
|
},
|
|
{
|
|
title: 'OMIM<hr class="mt-1 mb-1 bg-white mr-4">Morbid',
|
|
field: 'omimcombo',
|
|
formatter: omimcomboFormatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'select',
|
|
filterData: 'var:omimcomboChoices',
|
|
searchFormatter: false,
|
|
sortable: true
|
|
},
|
|
/*{
|
|
title: '<div><i class="fas fa-info-circle color-white" data-toggle="tooltip" data-placement="top" title="OMIM morbid map"></i></div>Morbid',
|
|
field: 'morbid',
|
|
formatter: morbidFormatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'select',
|
|
filterData: 'var:choices',
|
|
searchFormatter: false,
|
|
sortable: true
|
|
},*/
|
|
{
|
|
title: '<div><i class="fas fa-info-circle color-white" data-toggle="tooltip" data-placement="top" title="DECIPHER Haploinsufficiency index. Values less than 10% predict that a gene is more likely to exhibit haploinsufficiency."></i></div>%HI',
|
|
field: 'hi',
|
|
formatter: hiFormatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'select',
|
|
filterData: 'var:hibin',
|
|
filterCustomSearch: checkbin,
|
|
searchFormatter: false,
|
|
sortable: true
|
|
},
|
|
{
|
|
title: '<div><i class="fas fa-info-circle color-white" data-toggle="tooltip" data-placement="top" title="gnomAD v4.0 pLI score. Values greater than or equal to 0.9 indicate that a gene appears to be intolerant of loss of function variation."></i></div>pLI',
|
|
field: 'pli',
|
|
formatter: pliFormatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'select',
|
|
filterData: 'var:plibin',
|
|
filterCustomSearch: checkpli,
|
|
searchFormatter: false,
|
|
sortable: true
|
|
},
|
|
{
|
|
title: '<div><i class="fas fa-info-circle color-white" data-toggle="tooltip" data-placement="top" title="gnomAD v4.0 predicted loss-of-function. Values less than 0.6 indicate that a gene appears to be intolerant of loss of function variation."></i></div>LOEUF',
|
|
field: 'plof',
|
|
formatter: plofFormatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'select',
|
|
filterData: 'var:plofbin',
|
|
filterCustomSearch: checkplof,
|
|
searchFormatter: false,
|
|
sortable: true
|
|
},
|
|
{
|
|
field: 'date',
|
|
title: 'Last<div>Evaluated Date</div>',
|
|
formatter: reportFormatter,
|
|
cellStyle: cellFormatter,
|
|
filterControl: 'input',
|
|
searchFormatter: false,
|
|
sortName: 'rawdate',
|
|
sortable: true,
|
|
}
|
|
]
|
|
});
|
|
|
|
$table.on('load-error.bs.table', function (e, name, args) {
|
|
|
|
$("body").css("cursor", "default");
|
|
|
|
swal({
|
|
title: "Load Error",
|
|
text: "The system could not retrieve data from GeneGraph",
|
|
icon: "error"
|
|
});
|
|
})
|
|
|
|
$table.on('column-switch.bs.table', function (e, name, args) {
|
|
var hidden = $table.bootstrapTable('getHiddenColumns');
|
|
|
|
if (hidden.length > 0)
|
|
$('.action-hidden-columns').removeClass('hidden');
|
|
else
|
|
$('.action-hidden-columns').addClass('hidden');
|
|
});
|
|
|
|
$table.on('load-success.bs.table', function (e, name, args) {
|
|
|
|
$("body").css("cursor", "default");
|
|
window.update_addr();
|
|
|
|
if (name.hasOwnProperty('error'))
|
|
{
|
|
swal({
|
|
title: "Load Error",
|
|
text: name.error,
|
|
icon: "error"
|
|
});
|
|
}
|
|
|
|
var hidden = $table.bootstrapTable('getHiddenColumns');
|
|
|
|
if (hidden.length > 0)
|
|
$('.action-hidden-columns').removeClass('hidden');
|
|
else
|
|
$('.action-hidden-columns').addClass('hidden');
|
|
|
|
})
|
|
|
|
var html = `<!--<div class='mt-2 table-selector' style='float:left;'>
|
|
<span class="action-show-genes-btn pointer"><span class="dosage-box gene mr-1">G</span><span >Show Genes <i class="fas fa-toggle-on fa-lg action-show-genes"></i></span></span>
|
|
<span class="action-show-regions-btn pointer"><span class="dosage-box region ml-4 mr-1">R</span><span >Show Regions <i class="fas fa-toggle-on fa-lg action-show-regions"></i></span></span>
|
|
</div>-->
|
|
<div class="btn-group float-left mt-1" role="group" aria-label="...">
|
|
<button class="btn btn-success action-show-genes"><b>Genes: On</b></button>
|
|
<button class="btn btn-success action-show-regions"><b>Regions: On</b></button>
|
|
</div>
|
|
`;
|
|
|
|
$table.on('post-body.bs.table', function (e, name, args) {
|
|
|
|
$('[data-toggle="tooltip"]').tooltip();
|
|
|
|
})
|
|
|
|
|
|
/*$table.on('click-cell.bs.table', function (event, field, value, row, $obj) {
|
|
//console.log(e);
|
|
event.preventDefault();
|
|
event.stopPropagation();
|
|
event.stopImmediatePropagation();
|
|
|
|
});*/
|
|
|
|
$table.on('expand-row.bs.table', function (e, index, row, $obj) {
|
|
|
|
$obj.attr('colspan',12);
|
|
|
|
var t = $obj.closest('tr');
|
|
|
|
var stripe = t.prev().hasClass('bt-even-row');
|
|
|
|
t.addClass('dosage-row-bottom');
|
|
|
|
if (stripe)
|
|
t.addClass('bt-even-row');
|
|
else
|
|
t.addClass('bt-odd-row');
|
|
|
|
t.prev().addClass('dosage-row-top');
|
|
|
|
$obj.load( "/api/dosage/expand/" + row.hgnc_id );
|
|
|
|
return false;
|
|
})
|
|
|
|
|
|
$table.on('collapse-row.bs.table', function (e, index, row, $obj) {
|
|
|
|
$obj.closest('tr').prev().removeClass('dosage-row-top');
|
|
|
|
return false;
|
|
});
|
|
|
|
}
|
|
|
|
|
|
$(function() {
|
|
|
|
// Set cursor to busy prior to table init
|
|
$("body").css("cursor", "progress");
|
|
|
|
// initialize the table and load the data
|
|
inittable();
|
|
|
|
// make some mods to the search input field
|
|
var search = $('.fixed-table-toolbar .search input');
|
|
search.attr('placeholder', 'Search in table');
|
|
|
|
$( ".fixed-table-toolbar" ).show();
|
|
$('[data-toggle="tooltip"]').tooltip();
|
|
//$('[data-toggle="popover"]').popover();
|
|
|
|
var html = `<div class='ml-5' style='float:left; width:300px;'>
|
|
<form id="dosage-search-form" class="input-group" method="post" action="/kb/gene-dosage/region_search?rref=gXeb1Yvca">
|
|
<input type="hidden" name="_token" value="cQDtFK9v0wYGJfPmhVUB2MJPSYBLyIZD8SdCFTrx"> <div class="input-group-btn input-btn-region-prefix">
|
|
<button type="button" class="btn btn-primary dropdown-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false"> <span data-toggle="popover" data-trigger="hover" data-html="true" data-placement="top" data-container="body" title="Examples" data-content="<b>Cytoband:</b><br>Xp11.23<br><b>Full Coordinates:</b><br>chrX:47696301-47785026<br><b>Chromosome Only:</b><br>chrX<br><b>Start Only:</b><br>chrX:47696301<br><b>Stop Only:</b><br>chrX:-4778502"><i class="fas fa-info-circle"></i></span> <span class="action-select-text">GRCh37</span> <span class="caret"></span>
|
|
</button>
|
|
<ul class="dropdown-menu">
|
|
<li><a href="#" class="action-select-grch" data-uuid="GRCh37">GRCh37</a></li>
|
|
<li><a href="#" class="action-select-grch" data-uuid="GRCh38">GRCh38</a></li>
|
|
</ul>
|
|
<input id="select-gchr" type="hidden" name="type" value="GRCh37">
|
|
</div>
|
|
<input class="form-control search-input" name="region" type="search" placeholder="Enter cytoband or genomic coordinates" autocomplete="off">
|
|
<span class="input-group-btn">
|
|
<button class="btn btn-default" type="submit">Go!</button>
|
|
</span>
|
|
</form>
|
|
</div>
|
|
`;
|
|
|
|
$(".fixed-table-toolbar .search .input-group").attr("style","width:800px;");
|
|
$(".fixed-table-toolbar .search .input-group:first").attr("style","float:left; width:200px;");
|
|
//$(".fixed-table-toolbar .search .input-group:first").after(html);
|
|
|
|
$("button[name='filterControlSwitch']").attr('title', 'Column Search');
|
|
$("button[aria-label='Columns']").attr('title', 'Show/Hide More Columns');
|
|
|
|
$('[data-toggle="popover"]').popover();
|
|
|
|
region_listener();
|
|
|
|
$('.fixed-table-toolbar').on('change', '.toggle-all', function (e, name, args) {
|
|
|
|
var hidden = $table.bootstrapTable('getHiddenColumns');
|
|
|
|
if (hidden.length > 0)
|
|
$('.action-hidden-columns').removeClass('hidden');
|
|
else
|
|
$('.action-hidden-columns').addClass('hidden');
|
|
});
|
|
});
|
|
|
|
</script>
|
|
|
|
|
|
<script>
|
|
var mybutton = document.getElementById("clingen_top");
|
|
|
|
// When the user scrolls down 20px from the top of the document, show the button
|
|
window.onscroll = function() {scrollFunction()};
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function scrollFunction() {
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if (document.body.scrollTop > 20 || document.documentElement.scrollTop > 20) {
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mybutton.style.display = "block";
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} else {
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mybutton.style.display = "none";
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}
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}
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// When the user clicks on the button, scroll to the top of the document
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function topFunction() {
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document.body.scrollTop = 0;
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document.documentElement.scrollTop = 0;
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}
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</script>
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<script>
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$(".action-login").click(function() {
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$('#modalLogin').modal('show');
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});
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window.auth = 0;
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</script>
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<script src="/js/typeahead.js"></script>
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<script>
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$( ".typeQueryGene" ).click(function() {
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$("#navSearchBar").attr("action", "https://search.clinicalgenome.org/kb/genes");
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$( ".inputQueryGene" ).show();
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$( ".inputQueryGene .queryGene" ).show();
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$( ".inputQueryDisease" ).hide();
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$( ".inputQueryDisease .queryDisease" ).hide();
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$( ".inputQueryDrug" ).hide();
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$( ".inputQueryGeneName" ).hide();
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$( ".inputQueryGene .queryGeneName" ).hide();
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$( ".inputQueryDrug .queryDrug" ).hide();
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$( ".inputQueryRegion" ).hide();
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$( ".inputQueryRegion .queryRegion" ).hide();
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$( ".typeQueryLabel").text("Gene Symbol ");
|
|
});
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|
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$( ".typeQueryGeneName" ).click(function() {
|
|
$("#navSearchBar").attr("action", "https://search.clinicalgenome.org/kb/genes");
|
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$( ".inputQueryGeneName" ).show();
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$( ".inputQueryGene .queryGeneName" ).show();
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$( ".inputQueryGene" ).hide();
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$( ".inputQueryGene .queryGene" ).hide();
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$( ".inputQueryDisease" ).hide();
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$( ".inputQueryDisease .queryDisease" ).hide();
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$( ".inputQueryDrug" ).hide();
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$( ".inputQueryDrug .queryDrug" ).hide();
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$( ".inputQueryRegion" ).hide();
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$( ".inputQueryRegion .queryRegion" ).hide();
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$( ".typeQueryLabel").text("Gene Name ");
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});
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$( ".typeQueryDisease" ).click(function() {
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$("#navSearchBar").attr("action", "https://search.clinicalgenome.org/kb/conditions");
|
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$( ".inputQueryGene" ).hide();
|
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$( ".inputQueryGene .queryGene" ).hide();
|
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$( ".inputQueryGeneName" ).hide();
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$( ".inputQueryGene .queryGeneName" ).hide();
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$( ".inputQueryDisease" ).show();
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$( ".inputQueryDisease .queryDisease" ).show();
|
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$( ".inputQueryDrug" ).hide();
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$( ".inputQueryDrug .queryDrug" ).hide();
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$( ".inputQueryRegion" ).hide();
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$( ".inputQueryRegion .queryRegion" ).hide();
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$( ".typeQueryLabel").text("Disease Name ");
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});
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$( ".typeQueryDrug" ).click(function() {
|
|
$("#navSearchBar").attr("action", "https://search.clinicalgenome.org/kb/drugs");
|
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$( ".inputQueryGene" ).hide();
|
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$( ".inputQueryGene .queryGene" ).hide();
|
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$( ".inputQueryDisease" ).hide();
|
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$( ".inputQueryDisease .queryDisease" ).hide();
|
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$( ".inputQueryDrug" ).show();
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$( ".inputQueryDrug .queryDrug" ).show();
|
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$( ".inputQueryRegion" ).hide();
|
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$( ".inputQueryRegion .queryRegion" ).hide();
|
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$( ".typeQueryLabel").text("Drug Name ");
|
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$( ".inputQueryGeneName" ).hide();
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$( ".inputQueryGene .queryGeneName" ).hide();
|
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});
|
|
|
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$( ".typeQueryRegionGRCh37" ).click(function() {
|
|
$("#navSearchBar").attr("action", "https://search.clinicalgenome.org/kb/regions");
|
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$( ".inputQueryGene" ).hide();
|
|
$( ".inputQueryGene .queryGene" ).hide();
|
|
$( ".inputQueryDisease" ).hide();
|
|
$( ".inputQueryDisease .queryDisease" ).hide();
|
|
$( ".inputQueryDrug" ).hide();
|
|
$( ".inputQueryDrug .queryDrug" ).hide();
|
|
$( ".inputQueryRegion" ).show();
|
|
$( ".inputQueryRegion .queryRegion" ).show();
|
|
$( ".typeQueryLabel").text("GRCh37 Region ");
|
|
$( ".buildtype").val("GRCh37");
|
|
$( ".inputQueryGeneName" ).hide();
|
|
$( ".inputQueryGene .queryGeneName" ).hide();
|
|
});
|
|
$( ".typeQueryRegionGRCh38" ).click(function() {
|
|
$("#navSearchBar").attr("action", "https://search.clinicalgenome.org/kb/regions");
|
|
$( ".inputQueryGene" ).hide();
|
|
$( ".inputQueryGene .queryGene" ).hide();
|
|
$( ".inputQueryDisease" ).hide();
|
|
$( ".inputQueryDisease .queryDisease" ).hide();
|
|
$( ".inputQueryDrug" ).hide();
|
|
$( ".inputQueryDrug .queryDrug" ).hide();
|
|
$( ".inputQueryRegion" ).show();
|
|
$( ".inputQueryRegion .queryRegion" ).show();
|
|
$( ".typeQueryLabel").text("GRCh38 Region ");
|
|
$( ".buildtype").val("GRCh38");
|
|
$( ".inputQueryGeneName" ).hide();
|
|
$( ".inputQueryGene .queryGeneName" ).hide();
|
|
});
|
|
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|
|
/*var term = new Bloodhound({
|
|
datumTokenizer: Bloodhound.tokenizers.obj.whitespace('label'),
|
|
queryTokenizer: Bloodhound.tokenizers.whitespace,
|
|
remote: {
|
|
url: 'https://search.clinicalgenome.org/kb/home.json?term=%QUERY',
|
|
wildcard: '%QUERY'
|
|
}
|
|
});*/
|
|
|
|
var term = new Bloodhound({
|
|
datumTokenizer: Bloodhound.tokenizers.obj.whitespace('label'),
|
|
queryTokenizer: Bloodhound.tokenizers.whitespace,
|
|
remote: {
|
|
url: 'https://search.clinicalgenome.org/api/genes/look/%QUERY',
|
|
wildcard: '%QUERY'
|
|
}
|
|
});
|
|
|
|
var termGeneName = new Bloodhound({
|
|
datumTokenizer: Bloodhound.tokenizers.obj.whitespace('label'),
|
|
queryTokenizer: Bloodhound.tokenizers.whitespace,
|
|
remote: {
|
|
url: 'https://search.clinicalgenome.org/api/genes/lookByName/%QUERY',
|
|
wildcard: '%QUERY'
|
|
}
|
|
});
|
|
|
|
var termGene = new Bloodhound({
|
|
datumTokenizer: Bloodhound.tokenizers.obj.whitespace('label'),
|
|
queryTokenizer: Bloodhound.tokenizers.whitespace,
|
|
remote: {
|
|
url: 'https://search.clinicalgenome.org/api/genes/look/%QUERY',
|
|
wildcard: '%QUERY'
|
|
}
|
|
});
|
|
|
|
var termDisease = new Bloodhound({
|
|
datumTokenizer: Bloodhound.tokenizers.obj.whitespace('label'),
|
|
queryTokenizer: Bloodhound.tokenizers.whitespace,
|
|
remote: {
|
|
url: 'https://search.clinicalgenome.org/api/conditions/look/%QUERY',
|
|
wildcard: '%QUERY'
|
|
}
|
|
});
|
|
|
|
var termDrug = new Bloodhound({
|
|
datumTokenizer: Bloodhound.tokenizers.obj.whitespace('label'),
|
|
queryTokenizer: Bloodhound.tokenizers.whitespace,
|
|
remote: {
|
|
url: 'https://search.clinicalgenome.org/api/drugs/look/%QUERY',
|
|
wildcard: '%QUERY'
|
|
}
|
|
});
|
|
|
|
$('.queryDisease').typeahead(null,
|
|
{
|
|
name: 'termDisease',
|
|
display: 'label',
|
|
source: termDisease,
|
|
templates: {
|
|
//header: '<h3 class="league-name">Header</h3>',
|
|
//footer: '<div class=""><i class="fas fa-check-circle" style="color: green;"></i><span class="mr-2 ml-2">Disease has been curated by ClinGen</span></div>',
|
|
empty: [
|
|
'<div class="tt-suggestion tt-selectable"><div class="list-group-item">Nothing found.</div></div>'
|
|
],/*,
|
|
header: [
|
|
'<div class="list-group search-results-dropdown">'
|
|
],*/
|
|
suggestion: function (data) {
|
|
return '<div class="ml-1 mr-1 row pl-2 tt-ui-row ' + (data.curated ? 'tt-ui-curated-on' : '') + '" style=" border-bottom:1px solid #ccc"><span class="col-sm-7 col-xs-7 pl-0 tt-ui-label">' + data.label + '<span class="tt-ui-alias"> ' + data.alias + '</span></span><span class=" col-sm-3 col-xs-5 tt-ui-curie"> ' + data.hgnc + '</span>' + (data.curated ? '<span class="badge badge-success pull-right hidden-xs small mt-1 col-sm-2 tt-ui-curated">Curated </span>' : '') + '</div>'
|
|
|
|
}
|
|
},
|
|
limit: 20,
|
|
minLength: 3,
|
|
highlight: true,
|
|
hint: false,
|
|
autoselect:true,
|
|
}).bind('typeahead:selected',function(evt,item){
|
|
window.location = item.url;
|
|
});
|
|
|
|
$('.queryGeneName').typeahead(null,
|
|
{
|
|
name: 'termGeneName',
|
|
display: 'label',
|
|
source: termGeneName,
|
|
templates: {
|
|
//header: '<h3 class="league-name">Header</h3>',
|
|
//footer: '<div class=""><i class="fas fa-check-circle" style="color: green;"></i><span class="mr-2 ml-2">Disease has been curated by ClinGen</span></div>',
|
|
empty: [
|
|
'<div class="tt-suggestion tt-selectable"><div class="list-group-item">Nothing found.</div></div>'
|
|
],/*,
|
|
header: [
|
|
'<div class="list-group search-results-dropdown">'
|
|
],*/
|
|
suggestion: function (data) {
|
|
return '<div class="ml-1 mr-1 row pl-2 tt-ui-row ' + (data.curated ? 'tt-ui-curated-on' : '') + '" style=" border-bottom:1px solid #ccc"><span class="col-sm-7 col-xs-7 pl-0 tt-ui-label">' + data.label + '<span class="tt-ui-alias"> ' + data.alias + '</span></span><span class=" col-sm-3 col-xs-5 tt-ui-curie"> ' + data.hgnc + '</span>' + (data.curated ? '<span class="badge badge-success pull-right hidden-xs small mt-1 col-sm-2 tt-ui-curated">Curated </span>' : '') + '</div>'
|
|
|
|
}
|
|
},
|
|
limit: 20,
|
|
minLength: 3,
|
|
highlight: true,
|
|
hint: false,
|
|
autoselect:true,
|
|
}).bind('typeahead:selected',function(evt,item){
|
|
window.location = item.url;
|
|
});
|
|
|
|
$('.queryGene').typeahead(null,
|
|
{
|
|
name: 'termGene',
|
|
display: 'label',
|
|
source: termGene,
|
|
templates: {
|
|
//header: '<h3 class="league-name">Header</h3>',
|
|
//footer: '<div class="bg-light text-right text-dark"><i class="fas fa-check-circle" style="color: green;"></i><span class="mr-2 ml-2">Gene has been curated by ClinGen</span></div>',
|
|
empty: [
|
|
'<div class="tt-suggestion tt-selectable"><div class="list-group-item">Nothing found.</div></div>'
|
|
],/*,
|
|
header: [
|
|
'<div class="list-group search-results-dropdown">'
|
|
],*/
|
|
suggestion: function (data) {
|
|
return '<div class="ml-1 mr-1 row pl-2 tt-ui-row ' + (data.curated ? 'tt-ui-curated-on' : '') + '" style=" border-bottom:1px solid #ccc"><span class="col-sm-7 col-xs-7 pl-0 tt-ui-label">' + data.label + '<span class="tt-ui-alias"> ' + data.alias + '</span></span><span class=" col-sm-3 col-xs-5 tt-ui-curie"> ' + data.hgnc + '</span>' + (data.curated ? '<span class="badge badge-success pull-right hidden-xs small mt-1 col-sm-2 tt-ui-curated">Curated </span>' : '') + '</div>'
|
|
}
|
|
},
|
|
limit: 20,
|
|
minLength: 3,
|
|
highlight: true,
|
|
hint: false,
|
|
autoselect:true,
|
|
}).bind('typeahead:selected',function(evt,item){
|
|
window.location = item.url;
|
|
});
|
|
|
|
$('.queryDrug').typeahead(null,
|
|
{
|
|
name: 'termDrug',
|
|
display: 'label',
|
|
source: termDrug,
|
|
templates: {
|
|
//header: '<h3 class="league-name">Header</h3>',
|
|
//footer: '<div class=""><i class="fas fa-check-circle" style="color: green;"><i><span class="mr-2 ml-2">Drug has been curated by ClinGen</span></div>',
|
|
empty: [
|
|
'<div class="tt-suggestion tt-selectable"><div class="list-group-item">Nothing found.</div></div>'
|
|
],/*,
|
|
header: [
|
|
'<div class="list-group search-results-dropdown">'
|
|
],*/
|
|
suggestion: function (data) {
|
|
return '<div class="ml-1 mr-1 row pl-2 tt-ui-row ' + (data.curated ? 'tt-ui-curated-on' : '') + '" style=" border-bottom:1px solid #ccc"><span class="col-sm-7 col-xs-7 pl-0 tt-ui-label">' + data.label + '<span class="tt-ui-alias"> ' + data.alias + '</span></span><span class=" col-sm-3 col-xs-5 tt-ui-curie"> ' + data.hgnc + '</span>' + (data.curated ? '<span class="badge badge-success pull-right hidden-xs small mt-1 col-sm-2 tt-ui-curated">Curated </span>' : '') + '</div>'
|
|
|
|
}
|
|
},
|
|
limit: 20,
|
|
minLength: 3,
|
|
highlight: true,
|
|
hint: false,
|
|
autoselect:true,
|
|
}).bind('typeahead:selected',function(evt,item){
|
|
window.location = item.url;
|
|
});
|
|
|
|
</script>
|
|
|
|
|
|
<script type="text/javascript">
|
|
|
|
// Tracking for google of the onclicks
|
|
$( ".externallink" ).on( "click", function() {
|
|
var title = $(this).attr("title");
|
|
//console.log( "externallink" );
|
|
//console.log( title );
|
|
ga('send', 'event', 'external_link', 'click', title );
|
|
});
|
|
|
|
$( ".externalresource" ).on( "click", function() {
|
|
var title = $(this).attr("title");
|
|
//console.log( "externallink" );
|
|
//console.log( title );
|
|
ga('send', 'event', 'external_resource', 'click', title );
|
|
});
|
|
$( ".watchreportclick" ).on( "click", function() {
|
|
var title = $(this).attr("title");
|
|
//console.log( "watchreportclick" );
|
|
//console.log( title );
|
|
ga('send', 'event', 'track_report_click', 'click', title );
|
|
});
|
|
$( ".watchdownloadclick" ).on( "click", function() {
|
|
var title = $(this).attr("title");
|
|
//console.log( "watchdownloadclick" );
|
|
//console.log( title );
|
|
ga('send', 'event', 'track_download_click', 'click', title );
|
|
});
|
|
|
|
</script>
|
|
</body>
|
|
</html>
|