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<h1 id="insdc-geographic-location-name-l">INSDC Geographic Location Name List</h1>
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<h2 id="the-geo_loc_name-qualifier">The <code>/geo_loc_name</code> qualifier</h2>
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<p>The <code>/geo_loc_name</code> qualifier is used to indicate the geographic location of the collected sample.</p>
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<p>The text below outlines the format and the present list of allowed countries</p>
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<pre><code>Qualifier /geo_loc_name=
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Definition locality of isolation of the sequenced sample indicated in
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terms of political names for nations, oceans or seas, followed
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by regions and localities
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Value format "<geo_loc_name>[:<region>][, <locality>]" where
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geographic location name (geo_loc_name) is any value from the controlled vocabulary at
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http://www.insdc.org/country.html
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Example /geo_loc_name="Canada:Vancouver"
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/geo_loc_name="France:Cote d'Azur, Antibes"
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/geo_loc_name="Atlantic Ocean:Charlie Gibbs Fracture Zone"
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Comment Intended to provide a reference to the site where the source
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organism was isolated or sampled. Regions and localities should
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be indicated where possible. Note that the physical geography of
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the isolation or sampling site should be represented in
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/isolation_source.
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Country List to be included in Feature Table Definition Document
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Authority: INSDC
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Contact: NCBI
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Scope: /geo_loc_name=""
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</code></pre>
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<p>INSDC has approved a list of <a href="https://www.insdc.org/technical-specifications/missing-value-reporting/">null terms</a> that must be used for reporting missing values in /geo_loc_name. </p>
|
|
|
|
|
|
<h2 id="geographical-location-list">Geographical Location List</h2>
|
|
|
|
|
|
<p>Based on information from:
|
|
<a href="https://www.cia.gov/the-world-factbook/">https://www.cia.gov/the-world-factbook/</a> and <a href="http://unstats.un.org/unsd/methods/m49/m49.htm">http://unstats.un.org/unsd/methods/m49/m49.htm</a></p>
|
|
|
|
|
|
<ul>
|
|
<li>Afghanistan</li>
|
|
<li>Albania</li>
|
|
<li>Algeria</li>
|
|
<li>American Samoa</li>
|
|
<li>Andorra</li>
|
|
<li>Angola</li>
|
|
<li>Anguilla</li>
|
|
<li>Antarctica</li>
|
|
<li>Antigua and Barbuda</li>
|
|
<li>Arctic Ocean</li>
|
|
<li>Argentina</li>
|
|
<li>Armenia</li>
|
|
<li>Aruba</li>
|
|
<li>Ashmore and Cartier Islands</li>
|
|
<li>Atlantic Ocean</li>
|
|
<li>Australia</li>
|
|
<li>Austria</li>
|
|
<li>Azerbaijan</li>
|
|
<li>Bahamas</li>
|
|
<li>Bahrain</li>
|
|
<li>Baltic Sea</li>
|
|
<li>Baker Island</li>
|
|
<li>Bangladesh</li>
|
|
<li>Barbados</li>
|
|
<li>Bassas da India</li>
|
|
<li>Belarus</li>
|
|
<li>Belgium</li>
|
|
<li>Belize</li>
|
|
<li>Benin</li>
|
|
<li>Bermuda</li>
|
|
<li>Bhutan</li>
|
|
<li>Bolivia</li>
|
|
<li>Borneo</li>
|
|
<li>Bosnia and Herzegovina</li>
|
|
<li>Botswana</li>
|
|
<li>Bouvet Island</li>
|
|
<li>Brazil</li>
|
|
<li>British Virgin Islands</li>
|
|
<li>Brunei</li>
|
|
<li>Bulgaria</li>
|
|
<li>Burkina Faso</li>
|
|
<li>Burundi</li>
|
|
<li>Cambodia</li>
|
|
<li>Cameroon</li>
|
|
<li>Canada</li>
|
|
<li>Cape Verde</li>
|
|
<li>Cayman Islands</li>
|
|
<li>Central African Republic</li>
|
|
<li>Chad</li>
|
|
<li>Chile</li>
|
|
<li>China</li>
|
|
<li>Christmas Island</li>
|
|
<li>Clipperton Island</li>
|
|
<li>Cocos Islands</li>
|
|
<li>Colombia</li>
|
|
<li>Comoros</li>
|
|
<li>Cook Islands</li>
|
|
<li>Coral Sea Islands</li>
|
|
<li>Costa Rica</li>
|
|
<li>Cote d'Ivoire</li>
|
|
<li>Croatia</li>
|
|
<li>Cuba</li>
|
|
<li>Curacao</li>
|
|
<li>Cyprus</li>
|
|
<li>Czechia</li>
|
|
<li>Democratic Republic of the Congo</li>
|
|
<li>Denmark</li>
|
|
<li>Djibouti</li>
|
|
<li>Dominica</li>
|
|
<li>Dominican Republic</li>
|
|
<li>Ecuador</li>
|
|
<li>Egypt</li>
|
|
<li>El Salvador</li>
|
|
<li>Equatorial Guinea</li>
|
|
<li>Eritrea</li>
|
|
<li>Estonia</li>
|
|
<li>Eswatini</li>
|
|
<li>Ethiopia</li>
|
|
<li>Europa Island</li>
|
|
<li>Falkland Islands (Islas Malvinas)</li>
|
|
<li>Faroe Islands</li>
|
|
<li>Fiji</li>
|
|
<li>Finland</li>
|
|
<li>France</li>
|
|
<li>French Guiana</li>
|
|
<li>French Polynesia</li>
|
|
<li>French Southern and Antarctic Lands</li>
|
|
<li>Gabon</li>
|
|
<li>Gambia</li>
|
|
<li>Gaza Strip</li>
|
|
<li>Georgia</li>
|
|
<li>Germany</li>
|
|
<li>Ghana</li>
|
|
<li>Gibraltar</li>
|
|
<li>Glorioso Islands</li>
|
|
<li>Greece</li>
|
|
<li>Greenland</li>
|
|
<li>Grenada</li>
|
|
<li>Guadeloupe</li>
|
|
<li>Guam</li>
|
|
<li>Guatemala</li>
|
|
<li>Guernsey</li>
|
|
<li>Guinea</li>
|
|
<li>Guinea-Bissau</li>
|
|
<li>Guyana</li>
|
|
<li>Haiti</li>
|
|
<li>Heard Island and McDonald Islands</li>
|
|
<li>Honduras</li>
|
|
<li>Hong Kong</li>
|
|
<li>Howland Island</li>
|
|
<li>Hungary</li>
|
|
<li>Iceland</li>
|
|
<li>India</li>
|
|
<li>Indian Ocean</li>
|
|
<li>Indonesia</li>
|
|
<li>Iran</li>
|
|
<li>Iraq</li>
|
|
<li>Ireland</li>
|
|
<li>Isle of Man</li>
|
|
<li>Israel</li>
|
|
<li>Italy</li>
|
|
<li>Jamaica</li>
|
|
<li>Jan Mayen</li>
|
|
<li>Japan</li>
|
|
<li>Jarvis Island</li>
|
|
<li>Jersey</li>
|
|
<li>Johnston Atoll</li>
|
|
<li>Jordan</li>
|
|
<li>Juan de Nova Island</li>
|
|
<li>Kazakhstan</li>
|
|
<li>Kenya</li>
|
|
<li>Kerguelen Archipelago</li>
|
|
<li>Kingman Reef</li>
|
|
<li>Kiribati</li>
|
|
<li>Kosovo</li>
|
|
<li>Kuwait</li>
|
|
<li>Kyrgyzstan</li>
|
|
<li>Laos</li>
|
|
<li>Latvia</li>
|
|
<li>Lebanon</li>
|
|
<li>Lesotho</li>
|
|
<li>Liberia</li>
|
|
<li>Libya</li>
|
|
<li>Liechtenstein</li>
|
|
<li>Line Islands</li>
|
|
<li>Lithuania</li>
|
|
<li>Luxembourg</li>
|
|
<li>Macau</li>
|
|
<li>Madagascar</li>
|
|
<li>Malawi</li>
|
|
<li>Malaysia</li>
|
|
<li>Maldives</li>
|
|
<li>Mali</li>
|
|
<li>Malta</li>
|
|
<li>Marshall Islands</li>
|
|
<li>Martinique</li>
|
|
<li>Mauritania</li>
|
|
<li>Mauritius</li>
|
|
<li>Mayotte</li>
|
|
<li>Mediterranean Sea</li>
|
|
<li>Mexico</li>
|
|
<li>Micronesia, Federated States of</li>
|
|
<li>Midway Islands</li>
|
|
<li>Moldova</li>
|
|
<li>Monaco</li>
|
|
<li>Mongolia</li>
|
|
<li>Montenegro</li>
|
|
<li>Montserrat</li>
|
|
<li>Morocco</li>
|
|
<li>Mozambique</li>
|
|
<li>Myanmar</li>
|
|
<li>Namibia</li>
|
|
<li>Nauru</li>
|
|
<li>Navassa Island</li>
|
|
<li>Nepal</li>
|
|
<li>Netherlands</li>
|
|
<li>New Caledonia</li>
|
|
<li>New Zealand</li>
|
|
<li>Nicaragua</li>
|
|
<li>Niger</li>
|
|
<li>Nigeria</li>
|
|
<li>Niue</li>
|
|
<li>Norfolk Island</li>
|
|
<li>North Korea</li>
|
|
<li>North Macedonia</li>
|
|
<li>North Sea</li>
|
|
<li>Northern Mariana Islands</li>
|
|
<li>Norway</li>
|
|
<li>Oman</li>
|
|
<li>Pacific Ocean</li>
|
|
<li>Pakistan</li>
|
|
<li>Palau</li>
|
|
<li>Palmyra Atoll</li>
|
|
<li>Panama</li>
|
|
<li>Papua New Guinea</li>
|
|
<li>Paracel Islands</li>
|
|
<li>Paraguay</li>
|
|
<li>Peru</li>
|
|
<li>Philippines</li>
|
|
<li>Pitcairn Islands</li>
|
|
<li>Poland</li>
|
|
<li>Portugal</li>
|
|
<li>Puerto Rico</li>
|
|
<li>Qatar</li>
|
|
<li>Republic of the Congo</li>
|
|
<li>Reunion</li>
|
|
<li>Romania</li>
|
|
<li>Ross Sea</li>
|
|
<li>Russia</li>
|
|
<li>Rwanda</li>
|
|
<li>Saint Barthelemy</li>
|
|
<li>Saint Helena</li>
|
|
<li>Saint Kitts and Nevis</li>
|
|
<li>Saint Lucia</li>
|
|
<li>Saint Martin</li>
|
|
<li>Saint Pierre and Miquelon</li>
|
|
<li>Saint Vincent and the Grenadines</li>
|
|
<li>Samoa</li>
|
|
<li>San Marino</li>
|
|
<li>Sao Tome and Principe</li>
|
|
<li>Saudi Arabia</li>
|
|
<li>Senegal</li>
|
|
<li>Serbia</li>
|
|
<li>Seychelles</li>
|
|
<li>Sierra Leone</li>
|
|
<li>Singapore</li>
|
|
<li>Sint Maarten</li>
|
|
<li>Slovakia</li>
|
|
<li>Slovenia</li>
|
|
<li>Solomon Islands</li>
|
|
<li>Somalia</li>
|
|
<li>South Africa</li>
|
|
<li>South Georgia and the South Sandwich Islands</li>
|
|
<li>South Korea</li>
|
|
<li>South Sudan</li>
|
|
<li>Southern Ocean</li>
|
|
<li>Spain</li>
|
|
<li>Spratly Islands</li>
|
|
<li>Sri Lanka</li>
|
|
<li>State of Palestine</li>
|
|
<li>Sudan</li>
|
|
<li>Suriname</li>
|
|
<li>Svalbard</li>
|
|
<li>Sweden</li>
|
|
<li>Switzerland</li>
|
|
<li>Syria</li>
|
|
<li>Taiwan</li>
|
|
<li>Tajikistan</li>
|
|
<li>Tanzania</li>
|
|
<li>Tasman Sea</li>
|
|
<li>Thailand</li>
|
|
<li>Timor-Leste</li>
|
|
<li>Togo</li>
|
|
<li>Tokelau</li>
|
|
<li>Tonga</li>
|
|
<li>Trinidad and Tobago</li>
|
|
<li>Tromelin Island</li>
|
|
<li>Tunisia</li>
|
|
<li>Turkey</li>
|
|
<li>Turkmenistan</li>
|
|
<li>Turks and Caicos Islands</li>
|
|
<li>Tuvalu</li>
|
|
<li>Uganda</li>
|
|
<li>Ukraine</li>
|
|
<li>United Arab Emirates</li>
|
|
<li>United Kingdom</li>
|
|
<li>Uruguay</li>
|
|
<li>USA</li>
|
|
<li>Uzbekistan</li>
|
|
<li>Vanuatu</li>
|
|
<li>Venezuela</li>
|
|
<li>Viet Nam</li>
|
|
<li>Virgin Islands</li>
|
|
<li>Wake Island</li>
|
|
<li>Wallis and Futuna</li>
|
|
<li>West Bank</li>
|
|
<li>Western Sahara</li>
|
|
<li>Yemen</li>
|
|
<li>Zambia</li>
|
|
<li>Zimbabwe</li>
|
|
</ul>
|
|
|
|
|
|
<h2 id="historical-country-names">Historical Country Names</h2>
|
|
|
|
|
|
<ul>
|
|
<li>Belgian Congo</li>
|
|
<li>British Guiana</li>
|
|
<li>Burma</li>
|
|
<li>Czechoslovakia</li>
|
|
<li>Czech Republic</li>
|
|
<li>East Timor</li>
|
|
<li>Korea</li>
|
|
<li>Macedonia</li>
|
|
<li>Micronesia</li>
|
|
<li>Netherlands Antilles</li>
|
|
<li>Serbia and Montenegro</li>
|
|
<li>Siam</li>
|
|
<li>Swaziland</li>
|
|
<li>The former Yugoslav Republic of Macedonia</li>
|
|
<li>USSR</li>
|
|
<li>Yugoslavia</li>
|
|
<li>Zaire</li>
|
|
</ul>
|
|
|
|
|
|
</div>
|
|
<!--/.col1-->
|
|
<div class="col2">
|
|
<h2 id="insdc-members">INSDC Members</h2><h3 id="ddbj"><a href="http://www.ddbj.nig.ac.jp/">DDBJ</a></h3><ul>
|
|
<li><a href="http://www.ddbj.nig.ac.jp/submission_general-e.html">Submission</a></li>
|
|
<li><a href="http://getentry.ddbj.nig.ac.jp/">Sequence Retrieval</a></li>
|
|
</ul><h3 id="ena"><a href="http://www.ebi.ac.uk/">ENA</a></h3><ul>
|
|
<li><a href="http://www.ebi.ac.uk/embl/Submission/index.html">Submission</a></li>
|
|
<li><a href="http://www.ebi.ac.uk/embl/index.html">Sequence Retrieval</a></li>
|
|
</ul><h3 id="genbank"><a href="/genbank/">GenBank</a></h3><ul>
|
|
<li><a href="/genbank/submit">Submission</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/sites/entrez?db=nucleotide">Sequence Retrival</a></li>
|
|
</ul>
|
|
</div>
|
|
<!--/.col2-->
|
|
<div class="col3">
|
|
|
|
</div>
|
|
<!--/.col3-->
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|
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|
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</div>
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<div class="col5">
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|
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</div>
|
|
<div class="col6">
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|
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</div>
|
|
<div class="col7">
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|
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</div>
|
|
<div class="col8">
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|
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</div>
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<div class="col9">
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</div>
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