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<h1 id="training">Training</h1>
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<p>This page lists various training resources available for using Pathogen Detection. The focus is on webinars, videos, in-person training, and presentations by PD personnel.</p>
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<h3 id="the-most-up-to-date-training-for">The Most Up To Date Training for Pathogen Detection Web Resources</h3>
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<h4 id="as-of-oct-2024">As of Oct, 2024</h4>
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<p><a href="https://github.com/ncbi/workshop-asm-ngs-2024/wiki">NCBI Pathogen Detection Team, Datasets, and SRA teams did a workshop at ASM NGS 2024</a>. The workshop goals were:</p>
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<ol>
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<li>Demonstrate use of Pathogen Detection browsers</li>
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<li>Demonstrate use of GCP BigQuery in the Google Cloud Console to interrogate NCBI data</li>
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<li>Demonstrate use of NCBI Datasets and Dataformat CLIs</li>
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<li>Demonstrate how to retrieve SRA Normalized and SRA Lite format files and their differences</li>
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</ol>
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<h4 id="as-of-july-2024">As of July, 2024:</h4>
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<ul>
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||
<li><a href="https://www.nlm.nih.gov/ncbi/workshops/AfricaCDC_Summer2024/workshop-details.html">NCBI in coordination with Africa CDC</a> held a 3 day training session. Recordings of the sessions as well as the workshp materials are available to download.</li>
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</ul>
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<h4 id="as-of-april-2024">As of April, 2024:</h4>
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||
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||
<p>NCBI in coordination with the Association of Public Health Laboratories held two training sessions (Feb and April, 2024). In order to access these sessions, you will need an APHL login.</p>
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<ul>
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<li><a href="https://learn.aphl.org/learn/course/external/view/elearning/327/ncbi-pathogen-detection-part-1-introduction-to-the-resource">NCBI Pathogen Detection: Part 1 Introduction to the Resource</a></li>
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<li><a href="https://learn.aphl.org/learn/course/external/view/elearning/344/ncbi-pathogen-detection-part-2-advanced-pathogen-detection-concepts">NCBI Pathogen Detection: Part 2 Advanced Concepts</a></li>
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</ul>
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<p>The slide decks, and exercises and answer keys are available as PDFs here:</p>
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<ul>
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<li><a href="https://ftp.ncbi.nlm.nih.gov/pathogen/Training/NCBI_PD_PN_Training_Part1_Slides.pdf">NCBI Pathogen Detection: Part 1 – Introduction to the Resource</a></li>
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<li><a href="https://ftp.ncbi.nlm.nih.gov/pathogen/Training/NCBI_PD_PN_Training_Part1_Exercises_and_Answers.pdf">NCBI Pathogen Detection: Part 1 – Introduction to the Resource - Exercises and Answers</a></li>
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<li><a href="https://ftp.ncbi.nlm.nih.gov/pathogen/Training/NCBI_PD_PN_Training_Part2_Slides.pdf">NCBI Pathogen Detection: Part 2 – Advanced Concepts</a></li>
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<li><a href="https://ftp.ncbi.nlm.nih.gov/pathogen/Training/NCBI_PD_PN_Training_Part2_Exercises_and_Answers.pdf">NCBI Pathogen Detection: Part 2 – Advanced Concepts - Exercises and Answers</a></li>
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||
</ul>
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||
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<h3 id="training-for-pathogen-detection-">Training for Pathogen Detection Web Resources</h3>
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||
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<p>Older presentations and slides are available. Note, these may be out of date.</p>
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||
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<ul>
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<li><a href="https://vimeo.com/868039917">Accessing, Exploring and Using the Publicly Available Databases and National Sequence Archives for Clinical Microbiologists Part 1</a></li>
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<li><a href="https://vimeo.com/868043096">Accessing, Exploring and Using the Publicly Available Databases and National Sequence Archives for Clinical Microbiologists Part 2</a></li>
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||
<li><a href="https://ftp.ncbi.nlm.nih.gov/pub/factsheets/ASM2022/ASM2022_E.O.King_Award_Talk.pptx">ASM_Microbe_2022_Elizabeth_King_Lecture</a> </li>
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<li><a href="https://ftp.ncbi.nlm.nih.gov/pub/factsheets/ASM2022/NCBI_Pathogen_ASM_2022.pptx">ASM_Microbe_2022_PD_Presentation</a></li>
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||
<li><a href="https://ncbiinsights.ncbi.nlm.nih.gov/2018/03/14/march-21-webinar-ncbi-pathogen-detection-isolates-browser/">NCBI Webinar: Introducing the NCBI Pathogen Detection Isolates Browser</a>
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||
-- <a href="https://youtu.be/T8HluuzOb5c">recording of webinar</a>
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||
-- <a href="https://ftp.ncbi.nlm.nih.gov/pub/education/public_webinars/2018/03Mar21_Pathogen_Browser/">slides and questions/answers</a> </li>
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</ul>
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<h3 id="training-for-pathogen-detection-_1">Training for Pathogen Detection Cloud Resources</h3>
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||
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<p>This is the most up to date training for Pathogen Detection Cloud Resources (as of April, 2024)</p>
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||
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<ul>
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<li>YouTube video <a href="https://ncbiinsights.ncbi.nlm.nih.gov/event/ncbi-pathogen-detection-in-cloud-03-2023/">NCBI minute: Introduction to NCBI Pathogen Detection and antimicrobial resistance data in Google BigQuery</a> and <a href="https://www.ncbi.nlm.nih.gov/pathogens/docs/ncbi_minute_230329/">links to materials and information</a></li>
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<li>PD team participated in a <a href="https://github.com/ncbi/workshop-asm-ngs-2022/wiki">workshop</a> at ASM NGS 2022 which included some projects that demonstrate how to use our resources in the cloud.</li>
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||
</ul>
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||
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<h4 id="additional-information">Additional information</h4>
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<p>If you have any questions or want to set up a training session, contact us at:
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<a href="mailto:pd-help@ncbi.nlm.nih.gov">pd-help@ncbi.nlm.nih.gov</a>.</p>
|
||
|
||
<p>To learn more about Pathogen Detection for self-directed learning see the following resources:</p>
|
||
|
||
<ul>
|
||
<li><a href="/pathogens/pathogens_help/">Detailed Help</a></li>
|
||
<li><a href="https://ftp.ncbi.nlm.nih.gov/pub/factsheets/Factsheet_Pathogen_Detection.pdf">Browser Factsheet</a></li>
|
||
<li><a href="https://ftp.ncbi.nlm.nih.gov/pub/factsheets/Factsheet_AMR_Project.pdf">Antimicrobial Resistance Factsheet</a></li>
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||
<li><a href="/pathogens/docs/HowTo/">How To</a></li>
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<li><a href="/pathogens/docs/gcp/">PD on GCP</a> </li>
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</ul>
|
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</div>
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