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<TITLE> [Utilities-announce] PubMed E-Utilities 2015 DTD updates
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<H1>[Utilities-announce] PubMed E-Utilities 2015 DTD updates</H1>
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<B>utilities-announce at ncbi.nlm.nih.gov</B>
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<A HREF="mailto:utilities-announce%40ncbi.nlm.nih.gov?Subject=Re%3A%20%5BUtilities-announce%5D%20PubMed%20E-Utilities%202015%20DTD%20updates&In-Reply-To=%3Cmailman.183685.1414770654.20652.utilities-announce%40ncbi.nlm.nih.gov%3E"
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TITLE="[Utilities-announce] PubMed E-Utilities 2015 DTD updates">utilities-announce at ncbi.nlm.nih.gov
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</A><BR>
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<I>Fri Oct 31 11:50:46 EDT 2014</I>
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<P><UL>
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<LI>Previous message: <A HREF="000097.html">[Utilities-announce] E-utilities webinar on Oct 15 at 1 PM
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<PRE>Dear NCBI PubMed E-Utilities Users,
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We anticipate updating the PubMed E-Utilities DTDs for 2015 in mid-December, approximately on December 15, 2014.
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The forthcoming DTDs are now available:
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<A HREF="http://eutils.ncbi.nlm.nih.gov/entrez/query/DTD/bookdoc_150101.dtd">http://eutils.ncbi.nlm.nih.gov/entrez/query/DTD/bookdoc_150101.dtd</A>
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<A HREF="http://eutils.ncbi.nlm.nih.gov/entrez/query/DTD/nlmmedlinecitationset_150101.dtd">http://eutils.ncbi.nlm.nih.gov/entrez/query/DTD/nlmmedlinecitationset_150101.dtd</A>
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<A HREF="http://eutils.ncbi.nlm.nih.gov/entrez/query/DTD/pubmed_150101.dtd">http://eutils.ncbi.nlm.nih.gov/entrez/query/DTD/pubmed_150101.dtd</A>
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The DTD changes for the 2015 production year are itemized in the Revision Notes section near the top of the DTDs. The following describes the substantive changes:
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Add new UI attribute to DescriptorName, QualifierName, NameOfSubstance, SupplMeshName and PublicationType elements. The new required UI attribute will carry the MeSH unique identifier for DescriptorName, QualifierName, NameOfSubstance, SupplMeshName and PublicationType elements.
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DTD:
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<!ELEMENT DescriptorName (#PCDATA)>
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<!ATTLIST DescriptorName
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MajorTopicYN (Y | N) "N"
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Type (Geographic) #IMPLIED
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UI CDATA #REQUIRED>
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<!ELEMENT QualifierName (#PCDATA)>
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<!ATTLIST QualifierName
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MajorTopicYN (Y | N) "N"
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UI CDATA #REQUIRED>
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<!ELEMENT NameOfSubstance (#PCDATA)>
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<!ATTLIST NameOfSubstance
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UI CDATA #REQUIRED>
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<!ELEMENT SupplMeshName (#PCDATA)>
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<!ATTLIST SupplMeshName
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Type (Disease | Protocol) #REQUIRED
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UI CDATA #REQUIRED>
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<!ELEMENT PublicationTypeList (PublicationType+)>
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<!ELEMENT PublicationType (#PCDATA)>
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<!ATTLIST PublicationType
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UI CDATA #REQUIRED>
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Sample XML:
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<DescriptorName MajorTopicYN="N" UI="D054971">Orthostatic Intolerance</DescriptorName>
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<QualifierName MajorTopicYN="N" UI="Q000628">therapy</QualifierName>
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<NameOfSubstance UI="C058787">royal jelly</NameOfSubstance>
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<SupplMeshName Type="Disease" UI="C537735">Oculofaciocardiodental syndrome</SupplMeshName>
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<PublicationType UI="D016428">Journal Article</PublicationType>
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Add new optional and repeatable envelope element AffiliationInfo to Author and Investigator elements. AffiliationInfo envelope element includes Affliliation and Identifier elements.
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DTD:
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<!ELEMENT Author (((LastName, ForeName?, Initials?, Suffix?) | CollectiveName), Identifier*,
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AffiliationInfo*)>
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<!ATTLIST Author ValidYN (Y | N) "Y">
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<!ELEMENT Investigator (LastName, ForeName?, Initials?, Suffix?, Identifier*, AffiliationInfo*)>
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<!ATTLIST Investigator ValidYN (Y | N) "Y">
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<!ELEMENT AffiliationInfo(Affiliation, Identifier*)>
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<!ELEMENT Affiliation (#PCDATA)>
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<!ELEMENT Identifier (#PCDATA)>
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<!ATTLIST Identifier
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Source CDATA #REQUIRED)>
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Sample XML:
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<AuthorList CompleteYN="Y">
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<Author ValidYN="Y">
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<LastName>Rome</LastName>
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<ForeName>Benjamin N</ForeName>
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<Initials>BN</Initials>
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<Identifier Source="ORCID">0000000111111111</Identifier>
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<AffiliationInfo>
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<Affiliation>Harvard Medical School, Boston, Massachusetts</Affiliation>
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<Identifier Source="Ringgold">123456</Identifier>
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</AffiliationInfo>
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<AffiliationInfo>
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<Affiliation>Program on Regulation, Therapeutics, and Law, Division of Pharmacoepidemiology and Pharmacoeconomics, Department of Medicine, Brigham and Women's Hospital, Boston, Massachusetts</Affiliation>
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</AffiliationInfo>
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<AffiliationInfo>
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<Affiliation>Beth Israel Deaconess Medical</Affiliation>
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<Identifier Source="Ringgold">678922</Identifier>
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</AffiliationInfo>
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</Author>
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</AuthorList>
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<InvestigatorList>
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<Investigator ValidYN="Y">
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<LastName>Salloway</LastName>
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<ForeName>S</ForeName>
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<Initials>S</Initials>
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<AffiliationInfo>
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<Affiliation>University of Missouri at Kansas City</Affiliation>
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<Identifier Source="Ringgold">11223344</Identifier>
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</AffiliationInfo>
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<AffiliationInfo>
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<Affiliation>Kansas City AIDS Research Consortium</Affiliation>
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</AffiliationInfo>
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<AffiliationInfo>
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<Affiliation>AIDS Administration Missouri</Affiliation>
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<Identifier Source="Ringgold">66778899</Identifier>
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</AffiliationInfo>
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</Investigator>
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</InvestigatorList>
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The valid value UNLABELLED is removed from the AbstractText NlmCategory attribute because it is not used.
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DTD:
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<!ELEMENT AbstractText (#PCDATA)>
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<!ATTLIST AbstractText
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Label CDATA #IMPLIED
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NlmCategory (BACKGROUND | OBJECTIVE | METHODS | RESULTS | CONCLUSIONS | UNASSIGNED) #IMPLIED>
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The valid values AssociatedDataset and AssociatedPublication are added to the CommentsCorrections RefType attribute.
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DTD:
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<!ELEMENT CommentsCorrectionsList (CommentsCorrections+)>
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<!ELEMENT CommentsCorrections (RefSource, PMID?, Note?)>
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<!ATTLIST CommentsCorrections
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RefType (AssociatedDataset | AssociatedPublication | CommentOn | CommentIn | ErratumIn | ErratumFor |
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PartialRetractionIn | PartialRetractionOf | RepublishedFrom | RepublishedIn | RetractionOf |
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RetractionIn | UpdateIn | UpdateOf | SummaryForPatientsIn | OriginalReportIn |ReprintOf | ReprintIn | Cites) #REQUIRED>
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Sample XML:
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PMID 24872877
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<CommentsCorrectionsList>
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<CommentsCorrections RefType="AssociatedPublication">
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<RefSource>Gigascience. 2014 May 28;3:8. doi: 10.1186/2047-217X-3-8. eCollection 2014.</RefSource>
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<PMID Version="1">24872878</PMID>
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</CommentsCorrections>
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</CommentsCorrectionsList>
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PMID 24872878
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<CommentsCorrectionsList>
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<CommentsCorrections RefType="AssociatedDataset">
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<RefSource>Gigascience. 2014 May 28;3:7. doi: 10.1186/2047-217X-3-7. eCollection 2014.</RefSource>
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<PMID Version="1">24872877</PMID>
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</CommentsCorrections>
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</CommentsCorrectionsList>
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</PRE>
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<LI>Previous message: <A HREF="000097.html">[Utilities-announce] E-utilities webinar on Oct 15 at 1 PM
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