261 lines
9.5 KiB
Text
261 lines
9.5 KiB
Text
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<!DOCTYPE html>
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<html>
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<head>
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<title>region324 region of the zebrafish genome - Genome Reference Consortium</title>
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<div id="regionPage">
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<div id="contents" style="overflow:hidden;">
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<h1>Zebrafish Genome Region region324</h1>
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<dl id="issue_info" style="margin-top: 10px;">
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<dt>Assembly:</dt><dd><a href="/assembly/?term=GRCz11">GRCz11</a></dd>
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<dt>Location:</dt><dd>chr19:32,543,602-33,195,431</dd>
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<dt>Cytogenetic location:</dt><dd id="cytoloc"></dd>
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</dl>
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<!---
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<div id="ideogram" class="empty_ideogram">
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<p class="wait">Loading ideogram...</p>
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</div>
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--!>
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<h2 style="padding-top: 1em;">No associated genome issues</h2>
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<div>
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<table id="sequenceInformation" class="grc ">
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<thead>
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<caption>Patches and alternate loci</h2>
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<tr>
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<th>Show in Viewer</th>
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<th>GenBank ID</th>
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<th>RefSeq ID</th>
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<th>Scaffold type</th>
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<th>Length</th>
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<!-- <th>Assembly gaps</th> -->
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<th>Alignment mismatch</th>
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<th>Unique sequence</th>
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</tr>
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</thead>
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<tbody>
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<tr>
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<td>
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<label class="cellLabel" for="sviewerSelection_NW_018395055.1"> <input type="radio" id="sviewerSelection_scaffold_NW_018395055.1" name="viewerSelection" /> View this ALT</label>
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</td>
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<td><a href="/nucleotide/KZ115592.1" target="_blank" title="GenBank record for KZ115592.1">KZ115592.1</a></td>
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<td>
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<a href="/nucleotide/NW_018395055.1" target="_blank" title="RefSeq record for NW_018395055.1">NW_018395055.1</a></td>
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<td>ALT</td>
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<td>316,524</td>
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<!-- <td></td> -->
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<td>3,017</td>
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<td>18,284</td>
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</tr>
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<tr>
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<td>
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<label class="cellLabel" for="sviewerSelection_NW_018395056.1"> <input type="radio" id="sviewerSelection_scaffold_NW_018395056.1" name="viewerSelection" /> View this ALT</label>
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</td>
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<td><a href="/nucleotide/KZ115593.1" target="_blank" title="GenBank record for KZ115593.1">KZ115593.1</a></td>
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<td>
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<a href="/nucleotide/NW_018395056.1" target="_blank" title="RefSeq record for NW_018395056.1">NW_018395056.1</a></td>
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<td>ALT</td>
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<td>338,889</td>
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<!-- <td></td> -->
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<td>2,027</td>
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<td>12,386</td>
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</tr>
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</tbody>
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<tfoot>
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<tr>
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<td><label class="cellLabel" for="sviewerSelection_region_NC_007130.7" style="padding-left: 5px"><input type="radio" id="sviewerSelection_region_NC_007130.7" name="viewerSelection" checked="checked" /> View all region324</label></td>
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<td> </td>
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<td> </td>
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<td> </td>
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<td> </td>
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<td> </td>
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<td> </td>
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</tr>
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</tfoot>
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</table>
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</div>
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<h2 id="svHeader">
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region324 -- chr19 (<a href="/nucleotide/NC_007130.7" target="_blank" title=" RefSeq record for NC_007130.7">NC_007130.7</a>):32,543,602-33,195,431
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</h2>
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<div id="svContainer" style="margin-bottom: 250px">
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<div id="svWrapper" class="svWrapper shown">
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<div id="sv_0" class="SeqViewerApp" ></div>
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</div>
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</div>
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<script type="text/javascript">
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var chromosomeName = "19",
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chrStart = jQuery.decommify("32,543,602"),
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chrStop = jQuery.decommify("33,195,431"),
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taxid = "7955",
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assemblyName = "GRCz11".split(".")[0], // minor assembly name -> major assembly name
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majorAssemblyName = "GRCz11".split(".")[0],
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annotOnScaffold = ("chromosome" == "scaffold");
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var region = {
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chromosomeID: "NC_007130.7",
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chromosomeName: "19",
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chromosomeType: "chromosome",
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start: "32,543,602",
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stop: "33,195,431",
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dbName: "RefSeq"
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}
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var sviewerUrls = {
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"chromosome": "?embedded=true&appname=grc&id=NC_007130.7&app_context=GRC_Regions&assm_context=GCF_000002035.6&v=32543602:33195431&nocache=1",
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"scaffolds": [{'ids': {'genbank': 'KZ115592.1', 'refseq': 'NW_018395055.1', 'canonical': 'NW_018395055.1', 'canonical_db_name': 'RefSeq'}, 'patch_type': 'ALT', 'length': '316,524', 'unique_sequence': '18,284', 'alignment_mismatch': '3,017', 'sequence_viewer_url': '?embedded=true&appname=grc&id=NW_018395055.1&app_context=GRC_Regions&assm_context=GCF_000002035.6&nocache=1'}, {'ids': {'genbank': 'KZ115593.1', 'refseq': 'NW_018395056.1', 'canonical': 'NW_018395056.1', 'canonical_db_name': 'RefSeq'}, 'patch_type': 'ALT', 'length': '338,889', 'unique_sequence': '12,386', 'alignment_mismatch': '2,027', 'sequence_viewer_url': '?embedded=true&appname=grc&id=NW_018395056.1&app_context=GRC_Regions&assm_context=GCF_000002035.6&nocache=1'}]
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}
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$(document).ready(function(){
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//$.ajax({
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// url: '/projects/ideogram/data/bp2band.cgi?' + $.param({taxid: "7955", assm: majorAssemblyName}),
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// data: 'chromosome\tbp_start\tbp_stop\n19\t' + chrStart + '\t' + chrStop + '\n',
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// contentType: 'text/csv',
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// processData: false,
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// dataType: 'json',
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// type: 'POST'
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//}).done(function(data) {$('#cytoloc').text(data.coords[0].band);});
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});
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</script>
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<li><a title="Get GRC data via FTP" href="https://ftp.ncbi.nlm.nih.gov/pub/grc/">FTP</a></li>
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