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stroke-linecap="round" style="fill:#FFF" d="m320,350a153,153 0 1,0-2,2l170,170m-91-117 110,110-26,26-110-110"></path></svg></a><a id="jr-fip-done" class="wsprkl btn" title="Dismiss find">✘</a></nav><nav id="jr-fip-info-p"><a id="jr-fip-prev" class="wsprkl btn" title="Jump to previuos match">◀</a><button id="jr-fip-matches">no matches yet</button><a id="jr-fip-next" class="wsprkl btn" title="Jump to next match">▶</a></nav></nav></div><div id="jr-epub-interstitial" class="hidden"></div><div id="jr-content"><article data-type="main"><div class="main-content lit-style"><div class="fm-sec"><h1 id="_NBK3848_"><a class="bkr_black" href="/books/n/helpsnpfaq/?report=reader"><span itemprop="name">SNP FAQ Archive</span></a></h1></div><div class="body-content whole_rhythm"><ul id="toc_tllNBK3848_toc_QuickStart" class="simple-list toc toc-toggle bkr_toc_top"><li class="half_rhythm" id="toc_itm_NBK3848_toc_QuickStart"><a class="toc-item" href="/books/n/helpsnpfaq/QuickStart/?report=reader">dbSNP Submission Quick Start</a><ul id="toc_lst_NBK3848_toc_QuickStart" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_Begin_Sub"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_Begin_Sub/?report=reader">Beginning the Submission Process</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_Sub_frmt"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_Sub_frmt/?report=reader">Choosing a Submission Format</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_VCF_Submiss"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_VCF_Submiss/?report=reader">VCF Submissions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_FlatFile_Sub"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_FlatFile_Sub/?report=reader">Flat File Submissions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_Submit_Data"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_Submit_Data/?report=reader">Submitting Data and Submission Processing</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Search"><a class="toc-item" href="/books/n/helpsnpfaq/Search/?report=reader">Searching dbSNP for Variations and Variation Data</a><ul id="toc_lst_NBK3848_toc_Search" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_General_dbSNP_S"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_General_dbSNP_S/?report=reader">General dbSNP Search Options</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Locating_and_An"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Locating_and_An/?report=reader">Locating and Analyzing SNPs Associated with Disease Causing Mutations</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/?report=reader">Locating SNPs in a Gene or in Genes</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_chromo"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_chromo/?report=reader">Locating SNPs in (a) Chromosome(s)</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Locating_ENCODE"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Locating_ENCODE/?report=reader">Locating ENCODE (Encyclopedia Of DNA Elements) Project SNPs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_prot"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_prot/?report=reader">Locating SNPs in a Protein Family</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_primer"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_primer/?report=reader">Searching for SNP Primer Sequences</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_NCBI"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_NCBI/?report=reader">Searching for SNPs in a NCBI Genome Build and in BAC Clones</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Searching_for_a"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Searching_for_a/?report=reader">Searching for a Class of Variations in dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_ID"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_ID/?report=reader">Searching for SNPs or Specific SNP Data Using a Specific ID</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Using_SNP_IDs_t"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Using_SNP_IDs_t/?report=reader">Using SNP IDs to Find Genbank Accessions, and Vice Versa</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_kwd"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_kwd/?report=reader">Searching for SNPs Using Key Words, Names (Gene, Author, etc.), or Citations</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_EST"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_EST/?report=reader">Searching for SNPs Using Positional Data or EST Alignments</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/?report=reader">Retrieving Specific Data for a SNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_genotype"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_genotype/?report=reader">Searching for SNP Genotype, Allele and Frequency Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Batch_Query_Ret"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Batch_Query_Ret/?report=reader">Batch Query: Retrieving information for a large numbers of SNPs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Searching_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Searching_dbSNP/?report=reader">Searching dbSNP using Sequence Data Homology (Search using BLAST)</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_rawseq"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_rawseq/?report=reader">Searching for SNPs in Raw Sequence Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_mouse"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_mouse/?report=reader">Searching for SNPs between Mouse Strains</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_stats"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_stats/?report=reader">Searching for Statistics, Data Histories and Historical Data in dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_structural"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_structural/?report=reader">Searching for Structural (Copy Number) Variations</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_eSearch_Program"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_eSearch_Program/?report=reader">eSearch (Programmatic Searches)</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Search_Result_D"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Search_Result_D/?report=reader">Search Result Discrepancies</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Errors_that_Occ"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Errors_that_Occ/?report=reader">Errors that Occur While Searching</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Unable_to_Find_"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Unable_to_Find_/?report=reader">Unable to Find Published SNP in dbSNP</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Submit"><a class="toc-item" href="/books/n/helpsnpfaq/Submit/?report=reader">Submitting Variations and Variation Data to dbSNP</a><ul id="toc_lst_NBK3848_toc_Submit" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Hand"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Hand/?report=reader">Submission Handles</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Requirements_fo"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Requirements_fo/?report=reader">Requirements for dbSNP Submissions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Organism_Data_A"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Organism_Data_A/?report=reader">Organism Data Accepted by dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Vari"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Vari/?report=reader">Submitting Various Data Types to dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_The_dbSNP_Excel"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_The_dbSNP_Excel/?report=reader">The dbSNP Excel Submission Template</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_the"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_the/?report=reader">Filling out the Submission Worksheets</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_Spe"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_Spe/?report=reader">Filling out Specific Sections/Fields within a Submission Worksheet</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Form"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Form/?report=reader">Submission Formatting</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Automating_the_"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Automating_the_/?report=reader">Automating the Submission Process</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Info"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Info/?report=reader">Submitting Information for Existing SNPs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Batch_Submissio"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Batch_Submissio/?report=reader">Batch Submissions and Large Submissions to dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_SNPs"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_SNPs/?report=reader">Submitting SNPs using a Reference Sequence Position</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_and_"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_and_/?report=reader">Submission and Assignment of Submitted SNP(ss)/RefSNP(rs) Numbers</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_dbSNP_Submissio"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_dbSNP_Submissio/?report=reader">dbSNP Submission Processing and the “Hold Until Published” (HUP) Policy</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Erro"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Erro/?report=reader">Submission Errors and Submission Withdrawal</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Usin"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Usin/?report=reader">Submission Using dbSNP’s online Clinical/LSDB Submission Resources</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_External_Submis"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_External_Submis/?report=reader">External Submission Tools</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Reports"><a class="toc-item" href="/books/n/helpsnpfaq/Reports/?report=reader">Using dbSNP Data Reports</a><ul id="toc_lst_NBK3848_toc_Reports" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Entrez_SNP_and_"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Entrez_SNP_and_/?report=reader">Entrez SNP and Entrez Gene Response Pages</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Choosing_the_Da"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Choosing_the_Da/?report=reader">Choosing the Data Report that Contains the Data You Need</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Finding_Informa"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Finding_Informa/?report=reader">Finding Information in a dbSNP Data Report</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Compact_SNP_dat"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Compact_SNP_dat/?report=reader">Compact SNP data: The Bitfield</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Custom_Report_F"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Custom_Report_F/?report=reader">Custom Report Formats</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Intrptrt_refSNP"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Intrptrt_refSNP/?report=reader">Interpreting Discrepancies in refSNP Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Intrptrt_SNP"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Intrptrt_SNP/?report=reader">Interpreting Discrepancies in Submitted SNP (ss) Detail Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_DiscrpClstr_FTP"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_DiscrpClstr_FTP/?report=reader">Discrepancies between Cluster Report Data and FTP Content</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_DiscrpClstr_gen"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_DiscrpClstr_gen/?report=reader">Discrepancies between Cluster Report data and Other Genome Resources</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Field_Definitio"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Field_Definitio/?report=reader">Field Definitions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_SNP_Class_Defin"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_SNP_Class_Defin/?report=reader">SNP Class Definitions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Sequence_Format"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Sequence_Format/?report=reader">Sequence Formatting in dbSNP Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Batch_Reports"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Batch_Reports/?report=reader">Batch Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Displaying_Repo"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Displaying_Repo/?report=reader">Displaying Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Links_from_dbSN"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Links_from_dbSN/?report=reader">Links from dbSNP Reports to Other Online Data Resources</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Links_from_Othe"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Links_from_Othe/?report=reader">Links from Other Online Data Resources to dbSNP Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Creating_Your_O"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Creating_Your_O/?report=reader">Creating Your Own Link to a dbSNP Record</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Error_Messages_"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Error_Messages_/?report=reader">Error Messages in refSNP Cluster Reports</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Build"><a class="toc-item" href="/books/n/helpsnpfaq/Build/?report=reader">The dbSNP Build Process</a><ul id="toc_lst_NBK3848_toc_Build" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Triggers_New_Bld"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Triggers_New_Bld/?report=reader">What Triggers a New Build?</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_SNP_Build_Sched"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_SNP_Build_Sched/?report=reader">The SNP Build Schedule/Notification of Build Release</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Data_Chng_Btwn"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Data_Chng_Btwn/?report=reader">Data Changes that Occur Between Builds</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_LagTim_dbSNP_FTP"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_LagTim_dbSNP_FTP/?report=reader">Lag Time between dbSNP Website and FTP Site Following Build</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Diff_SNP_Genome"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Diff_SNP_Genome/?report=reader">The Difference Between the SNP Build and the Genome Build</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Old_vs_New_Data"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Old_vs_New_Data/?report=reader">Using Old vs. New Build Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Find_Old_Build"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Find_Old_Build/?report=reader">Finding Old Build Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Find_Build_Numb"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Find_Build_Numb/?report=reader">Finding a Build Number Based on a Date and Vice Versa</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Mapping"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Mapping/?report=reader">The dbSNP Mapping Process</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Mg_RefSNP_RefSNP"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Mg_RefSNP_RefSNP/?report=reader">Merging RefSNP Numbers and RefSNP Clusters</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Ancest_Allele"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Ancest_Allele/?report=reader">Ancestral Allele Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Avg_Allele_Freq"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Avg_Allele_Freq/?report=reader">Average Allele Frequency Calculation</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Double_Hit_SNP"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Double_Hit_SNP/?report=reader">Double Hit SNP Computation</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_HardyWeinberg_Eq"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_HardyWeinberg_Eq/?report=reader">Hardy Weinberg Equilibrium Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Heterozygosity"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Heterozygosity/?report=reader">Heterozygosity Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Linkage_Disequil"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Linkage_Disequil/?report=reader">Linkage Disequilibrium Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_HaplotpDat"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_HaplotpDat/?report=reader">dbSNP Haplotype Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Haplogroup"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Haplogroup/?report=reader">dbSNP and Haplogroup Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_HaplotpSnp"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_HaplotpSnp/?report=reader">dbSNP and Haplotype Tagged SNPs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_HapMap"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_HapMap/?report=reader">dbSNP and HapMap Data</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP/?report=reader">Locating and Using Data from dbSNP’s FTP Site</a><ul id="toc_lst_NBK3848_toc_FTP" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Navigating_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Navigating_dbSNP/?report=reader">Navigating in dbSNP’s FTP Site</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/?report=reader">Finding Specific Data in dbSNP’s FTP Files</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_SNP_Report_Files"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_SNP_Report_Files/?report=reader">SNP Report Files</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_dbSNP_Data_Dict"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_dbSNP_Data_Dict/?report=reader">dbSNP Data Dictionary</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Missing_FTP_File"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Missing_FTP_File/?report=reader">Missing FTP Files</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Download_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Download_dbSNP/?report=reader">Downloading From dbSNP’s FTP Site</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Decompress_data"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Decompress_data/?report=reader">Decompressing Data Obtained from dbSNP’s FTP Site</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Parsing_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Parsing_dbSNP/?report=reader">Parsing Data Obtained from dbSNP’s FTP Site</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Discrp_dbSNP_FTP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Discrp_dbSNP_FTP/?report=reader">Discrepancies between dbSNP Summary Data and FTP Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Discrp_Clstr_FTP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Discrp_Clstr_FTP/?report=reader">Discrepancies between Cluster Report Data and FTP Data Contents</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Discrp_FTP_Data"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Discrp_FTP_Data/?report=reader">Discrepancies between FTP Documentation and Data Dictionary</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Direct_Queries"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Direct_Queries/?report=reader">Direct Queries of dbSNP’s Database Server</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Updating_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Updating_dbSNP/?report=reader">Updating dbSNP’s FTP data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Eutils"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Eutils/?report=reader">Eutils (E-utilities)</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schema"><a class="toc-item" href="/books/n/helpsnpfaq/Schema/?report=reader">dbSNP Organization and Structure (Schema)</a><ul id="toc_lst_NBK3848_toc_Schema" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Locating_Schema"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Locating_Schema/?report=reader">Locating Schema Tables that Contain Specific SNP Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_SchemaTable_Def"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_SchemaTable_Def/?report=reader">SchemaTable Definitions/Locations</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Field_Definitio"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Field_Definitio/?report=reader">Field Definitions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Schema_Changes_"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Schema_Changes_/?report=reader">Schema Changes and Updates</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_dbSNP_Build_Upd"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_dbSNP_Build_Upd/?report=reader">dbSNP Build Updates and Schema Changes</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Downloading_Spe"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Downloading_Spe/?report=reader">Downloading Specific Schema Tables</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_How_does_dbSNP_"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_How_does_dbSNP_/?report=reader">How does dbSNP draw the Schema Tables</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/?report=reader">Local Copies of dbSNP</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Content"><a class="toc-item" href="/books/n/helpsnpfaq/Content/?report=reader">dbSNP Data Content Information</a><ul id="toc_lst_NBK3848_toc_Content" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_Data_Orig"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_Data_Orig/?report=reader">dbSNP Data Origins</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_QualContrl"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_QualContrl/?report=reader">dbSNP Data Quality Control</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_Data_Stats"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_Data_Stats/?report=reader">dbSNP Data Statistics</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_Data_Strg"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_Data_Strg/?report=reader">dbSNP Data Storage Information</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Classes_Gen_Var"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Classes_Gen_Var/?report=reader">Classes of Genetic Variation Included in dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Size_Genetic_Var"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Size_Genetic_Var/?report=reader">Size of Genetic Variations Included in dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Seq_Notat_SNPs"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Seq_Notat_SNPs/?report=reader">Sequence Notation for SNPs Housed in dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/?report=reader">Submitted SNPs (ss) and Other Data Submitted to dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Clustered_RefSNP"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Clustered_RefSNP/?report=reader">Clustered RefSNPs (rs) and Other Data Computed in House</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Ancestral_Allele"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Ancestral_Allele/?report=reader">Ancestral Allele Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Associat_Studies"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Associat_Studies/?report=reader">Association Studies</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Ascertmnt_Bias"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Ascertmnt_Bias/?report=reader">Ascertainment Bias</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Auto_SNP_Collect"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Auto_SNP_Collect/?report=reader">Automated SNP Collection (Data Mining)</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Avg_Allele_Frequ"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Avg_Allele_Frequ/?report=reader">Average Allele Frequency Calculation</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Double_Hit_SNP"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Double_Hit_SNP/?report=reader">Double Hit SNP Computation</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_HardyWeinberg_Eq"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_HardyWeinberg_Eq/?report=reader">Hardy Weinberg Equilibrium Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Heterozygosity"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Heterozygosity/?report=reader">Heterozygosity Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Linkage_Disequil"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Linkage_Disequil/?report=reader">Linkage Disequilibrium Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_References"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_References/?report=reader">References</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Citing"><a class="toc-item" href="/books/n/helpsnpfaq/Citing/?report=reader">Citing dbSNP</a><ul id="toc_lst_NBK3848_toc_Citing" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cit_dbSNP_in_a_Publ"><a class="toc-item" href="/books/n/helpsnpfaq/Cit_dbSNP_in_a_Publ/?report=reader">Citing dbSNP in a Publication</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cit_dbSNP_CreateDate"><a class="toc-item" href="/books/n/helpsnpfaq/Cit_dbSNP_CreateDate/?report=reader">dbSNP Creation Date Information</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cit_dbSNP_db_Stats"><a class="toc-item" href="/books/n/helpsnpfaq/Cit_dbSNP_db_Stats/?report=reader">dbSNP Database Statistics</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cit_dbSNP_srchengine"><a class="toc-item" href="/books/n/helpsnpfaq/Cit_dbSNP_srchengine/?report=reader">Using dbSNP data in a Locally Created Public Search Engine</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cit_Images_NCBIsite"><a class="toc-item" href="/books/n/helpsnpfaq/Cit_Images_NCBIsite/?report=reader">Using Images from NCBI Sites</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info"><a class="toc-item" href="/books/n/helpsnpfaq/Info/?report=reader">General Information about dbSNP, Single Nucleotide Polymorphisims, and Genetics</a><ul id="toc_lst_NBK3848_toc_Info" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_GenInfo_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/Info_GenInfo_dbSNP/?report=reader">General Information about dbSNP as a Database Resource</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_Geninfo_SingleN"><a class="toc-item" href="/books/n/helpsnpfaq/Info_Geninfo_SingleN/?report=reader">General information about Single Nucleotide Polymorphisms</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_Info_Haplotypes"><a class="toc-item" href="/books/n/helpsnpfaq/Info_Info_Haplotypes/?report=reader">Information about Haplotypes</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_dbSNP_Phenotype"><a class="toc-item" href="/books/n/helpsnpfaq/Info_dbSNP_Phenotype/?report=reader">dbSNP and Phenotype Records</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_STR_Naming"><a class="toc-item" href="/books/n/helpsnpfaq/Info_STR_Naming/?report=reader">STR Naming Convention</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_Evolution_Quest"><a class="toc-item" href="/books/n/helpsnpfaq/Info_Evolution_Quest/?report=reader">Evolution Questions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_Pedigree_Softwr"><a class="toc-item" href="/books/n/helpsnpfaq/Info_Pedigree_Softwr/?report=reader">Pedigree Software</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_PersnlHaplotype"><a class="toc-item" href="/books/n/helpsnpfaq/Info_PersnlHaplotype/?report=reader">Personal Haplotype Questions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_Personal_SNP"><a class="toc-item" href="/books/n/helpsnpfaq/Info_Personal_SNP/?report=reader">Personal SNP Screenings</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_Human_Gene"><a class="toc-item" href="/books/n/helpsnpfaq/Info_Human_Gene/?report=reader">Human Gene Nomenclature</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsquick"><a class="toc-item" href="/books/n/helpsnpfaq/vbsquick/?report=reader">Human Variation Batch Submission Quick Start</a><ul id="toc_lst_NBK3848_toc_vbsquick" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Data_Types_Ac"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Data_Types_Ac/?report=reader">Data Types Accepted in a Variation Batch Submission</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Beginning_the"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Beginning_the/?report=reader">Beginning the Submission Process</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Using_the_Exc"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Using_the_Exc/?report=reader">Using the Excel Submission Template to create your Batch Submission</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Submitting_Da"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Submitting_Da/?report=reader">Submitting Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Submission_Pr"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Submission_Pr/?report=reader">Submission Processing</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Variation_ID_"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Variation_ID_/?report=reader">Variation ID Assignment</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Hold_Until_Pu"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Hold_Until_Pu/?report=reader">Hold Until Published (HUP) Policy</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_How_do_I_Upda"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_How_do_I_Upda/?report=reader">How do I Update Data I’ve already Submitted?</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_How_do_I_find"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_How_do_I_find/?report=reader">How do I find my variations after submission, but before rs number assignment?</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTquick"><a class="toc-item" href="/books/n/helpsnpfaq/GSTquick/?report=reader">Genome Workbench SNP Tools (GST) Quick Start</a><ul id="toc_lst_NBK3848_toc_GSTquick" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_GST_Defined"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_GST_Defined/?report=reader">GST Defined</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_GST_Features"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_GST_Features/?report=reader">GST Features</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_Use_GST_frst"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_Use_GST_frst/?report=reader">Using GST for the First Time</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_Use_Spcif_GST"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_Use_Spcif_GST/?report=reader">Using Specific GST Features</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_Use_GST_GWAS"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_Use_GST_GWAS/?report=reader">Using GST to Study Genome Wide Association (GWAS) Data</a></li></ul></li></ul></div></div><div class="small-screen-prev"></div><div class="small-screen-next"></div></article></div><div id="jr-scripts"><script 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