479 lines
No EOL
163 KiB
HTML
479 lines
No EOL
163 KiB
HTML
<?xml version="1.0" encoding="utf-8"?>
|
|
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
|
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
|
|
|
|
<head><meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
|
<!-- AppResources meta begin -->
|
|
<meta name="paf-app-resources" content="" />
|
|
<script type="text/javascript">var ncbi_startTime = new Date();</script>
|
|
|
|
<!-- AppResources meta end -->
|
|
|
|
<!-- TemplateResources meta begin -->
|
|
<meta name="paf_template" content="" />
|
|
|
|
<!-- TemplateResources meta end -->
|
|
|
|
<!-- Logger begin -->
|
|
<meta name="ncbi_db" content="books" /><meta name="ncbi_pdid" content="book-toc" /><meta name="ncbi_acc" content="NBK3848" /><meta name="ncbi_domain" content="helpsnpfaq" /><meta name="ncbi_report" content="record" /><meta name="ncbi_type" content="fulltext" /><meta name="ncbi_objectid" content="" /><meta name="ncbi_pcid" content="/NBK3848/" /><meta name="ncbi_pagename" content="SNP FAQ Archive - NCBI Bookshelf" /><meta name="ncbi_bookparttype" content="toc" /><meta name="ncbi_app" content="bookshelf" />
|
|
<!-- Logger end -->
|
|
|
|
<title>SNP FAQ Archive - NCBI Bookshelf</title>
|
|
|
|
<!-- AppResources external_resources begin -->
|
|
<link rel="stylesheet" href="/core/jig/1.15.2/css/jig.min.css" /><script type="text/javascript" src="/core/jig/1.15.2/js/jig.min.js"></script>
|
|
|
|
<!-- AppResources external_resources end -->
|
|
|
|
<!-- Page meta begin -->
|
|
<meta name="robots" content="NOINDEX,NOFOLLOW,NOARCHIVE,NOIMAGEINDEX" /><meta name="citation_title" content="SNP FAQ Archive" /><meta name="citation_publisher" content="National Center for Biotechnology Information (US)" /><meta name="citation_date" content="2005" /><meta name="citation_fulltext_html_url" content="https://www.ncbi.nlm.nih.gov/books/NBK3848/" /><link rel="schema.DC" href="http://purl.org/DC/elements/1.0/" /><meta name="DC.Title" content="SNP FAQ Archive" /><meta name="DC.Type" content="Text" /><meta name="DC.Publisher" content="National Center for Biotechnology Information (US)" /><meta name="DC.Date" content="2005" /><meta name="DC.Identifier" content="https://www.ncbi.nlm.nih.gov/books/NBK3848/" /><meta name="description" content="This book contains actual questions asked by dbSNP and dbMHC users. We have tried to compile questions and answers that are representative of the entire spectrum of questions that our users ask, regardless of whether or not they are frequently asked. It is therefore likely that the question you have now, or a variant of it, may have been asked before, and may be in this book. The book will be updated with new questions regularly." /><meta name="og:title" content="SNP FAQ Archive" /><meta name="og:type" content="book" /><meta name="og:description" content="This book contains actual questions asked by dbSNP and dbMHC users. We have tried to compile questions and answers that are representative of the entire spectrum of questions that our users ask, regardless of whether or not they are frequently asked. It is therefore likely that the question you have now, or a variant of it, may have been asked before, and may be in this book. The book will be updated with new questions regularly." /><meta name="og:url" content="https://www.ncbi.nlm.nih.gov/books/NBK3848/" /><meta name="og:site_name" content="NCBI Bookshelf" /><meta name="og:image" content="https://www.ncbi.nlm.nih.gov/corehtml/pmc/pmcgifs/bookshelf/thumbs/th-helpsnpfaq-lrg.png" /><meta name="twitter:card" content="summary" /><meta name="twitter:site" content="@ncbibooks" /><meta name="warning" content="This publication is provided for historical reference only and the information may be out of date." /><meta name="bk-non-canon-loc" content="/books/n/helpsnpfaq/toc/" /><link rel="canonical" href="https://www.ncbi.nlm.nih.gov/books/NBK3848/" /><link rel="stylesheet" href="/corehtml/pmc/css/figpopup.css" type="text/css" media="screen" /><link rel="stylesheet" href="/corehtml/pmc/css/bookshelf/2.26/css/books.min.css" type="text/css" /><link rel="stylesheet" href="/corehtml/pmc/css/bookshelf/2.26/css/books_print.min.css" type="text/css" media="print" /><style type="text/css">.main-content {background:transparent repeat-y top left;background-image:url(/corehtml/pmc/css/bookshelf/2.26/img/archive.png);background-size: auto, contain; padding:0 0 0 3em }</style><style type="text/css">p a.figpopup{display:inline !important} .bk_tt {font-family: monospace} .first-line-outdent .bk_ref {display: inline} </style><script type="text/javascript" src="/corehtml/pmc/js/jquery.hoverIntent.min.js"> </script><script type="text/javascript" src="/corehtml/pmc/js/common.min.js?_=3.18"> </script><script type="text/javascript" src="/corehtml/pmc/js/large-obj-scrollbars.min.js"> </script><script type="text/javascript">window.name="mainwindow";</script><script type="text/javascript" src="/corehtml/pmc/js/bookshelf/2.26/book-toc.min.js"> </script><script type="text/javascript" src="/corehtml/pmc/js/bookshelf/2.26/books.min.js"> </script><meta name="book-collection" content="helpcollect" />
|
|
|
|
<!-- Page meta end -->
|
|
<link rel="shortcut icon" href="//www.ncbi.nlm.nih.gov/favicon.ico" /><meta name="ncbi_phid" content="CE8D55CD7C801C510000000000490036.m_13" />
|
|
<meta name='referrer' content='origin-when-cross-origin'/><link type="text/css" rel="stylesheet" href="//static.pubmed.gov/portal/portal3rc.fcgi/4216699/css/3852956/3985586/3808861/4121862/3974050/3917732/251717/4216701/14534/45193/4113719/3849091/3984811/3751656/4033350/3840896/3577051/3852958/4008682/4207974/4206132/4062871/12930/3964959/3854974/36029/4128070/9685/3549676/3609192/3609193/3609213/3395586.css" /><link type="text/css" rel="stylesheet" href="//static.pubmed.gov/portal/portal3rc.fcgi/4216699/css/3411343/3882866.css" media="print" /></head>
|
|
<body class="book-toc">
|
|
<div class="grid">
|
|
<div class="col twelve_col nomargin shadow">
|
|
<!-- System messages like service outage or JS required; this is handled by the TemplateResources portlet -->
|
|
<div class="sysmessages">
|
|
<noscript>
|
|
<p class="nojs">
|
|
<strong>Warning:</strong>
|
|
The NCBI web site requires JavaScript to function.
|
|
<a href="/guide/browsers/#enablejs" title="Learn how to enable JavaScript" target="_blank">more...</a>
|
|
</p>
|
|
</noscript>
|
|
</div>
|
|
<!--/.sysmessage-->
|
|
<div class="wrap">
|
|
<div class="page">
|
|
<div class="top">
|
|
<div id="universal_header">
|
|
<section class="usa-banner">
|
|
<div class="usa-accordion">
|
|
<header class="usa-banner-header">
|
|
<div class="usa-grid usa-banner-inner">
|
|
<img src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/favicons/favicon-57.png" alt="U.S. flag" />
|
|
<p>An official website of the United States government</p>
|
|
<button class="non-usa-accordion-button usa-banner-button" aria-expanded="false" aria-controls="gov-banner-top" type="button">
|
|
<span class="usa-banner-button-text">Here's how you know</span>
|
|
</button>
|
|
</div>
|
|
</header>
|
|
<div class="usa-banner-content usa-grid usa-accordion-content" id="gov-banner-top" aria-hidden="true">
|
|
<div class="usa-banner-guidance-gov usa-width-one-half">
|
|
<img class="usa-banner-icon usa-media_block-img" src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/icon-dot-gov.svg" alt="Dot gov" />
|
|
<div class="usa-media_block-body">
|
|
<p>
|
|
<strong>The .gov means it's official.</strong>
|
|
<br />
|
|
Federal government websites often end in .gov or .mil. Before
|
|
sharing sensitive information, make sure you're on a federal
|
|
government site.
|
|
</p>
|
|
</div>
|
|
</div>
|
|
<div class="usa-banner-guidance-ssl usa-width-one-half">
|
|
<img class="usa-banner-icon usa-media_block-img" src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/icon-https.svg" alt="Https" />
|
|
<div class="usa-media_block-body">
|
|
<p>
|
|
<strong>The site is secure.</strong>
|
|
<br />
|
|
The <strong>https://</strong> ensures that you are connecting to the
|
|
official website and that any information you provide is encrypted
|
|
and transmitted securely.
|
|
</p>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
</section>
|
|
<div class="usa-overlay"></div>
|
|
<header class="ncbi-header" role="banner" data-section="Header">
|
|
|
|
<div class="usa-grid">
|
|
<div class="usa-width-one-whole">
|
|
|
|
<div class="ncbi-header__logo">
|
|
<a href="/" class="logo" aria-label="NCBI Logo" data-ga-action="click_image" data-ga-label="NIH NLM Logo">
|
|
<img src="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/logos/AgencyLogo.svg" alt="NIH NLM Logo" />
|
|
</a>
|
|
</div>
|
|
|
|
<div class="ncbi-header__account">
|
|
<a id="account_login" href="https://account.ncbi.nlm.nih.gov" class="usa-button header-button" style="display:none" data-ga-action="open_menu" data-ga-label="account_menu">Log in</a>
|
|
<button id="account_info" class="header-button" style="display:none" aria-controls="account_popup" type="button">
|
|
<span class="fa fa-user" aria-hidden="true">
|
|
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" width="20px" height="20px">
|
|
<g style="fill: #fff">
|
|
<ellipse cx="12" cy="8" rx="5" ry="6"></ellipse>
|
|
<path d="M21.8,19.1c-0.9-1.8-2.6-3.3-4.8-4.2c-0.6-0.2-1.3-0.2-1.8,0.1c-1,0.6-2,0.9-3.2,0.9s-2.2-0.3-3.2-0.9 C8.3,14.8,7.6,14.7,7,15c-2.2,0.9-3.9,2.4-4.8,4.2C1.5,20.5,2.6,22,4.1,22h15.8C21.4,22,22.5,20.5,21.8,19.1z"></path>
|
|
</g>
|
|
</svg>
|
|
</span>
|
|
<span class="username desktop-only" aria-hidden="true" id="uname_short"></span>
|
|
<span class="sr-only">Show account info</span>
|
|
</button>
|
|
</div>
|
|
|
|
<div class="ncbi-popup-anchor">
|
|
<div class="ncbi-popup account-popup" id="account_popup" aria-hidden="true">
|
|
<div class="ncbi-popup-head">
|
|
<button class="ncbi-close-button" data-ga-action="close_menu" data-ga-label="account_menu" type="button">
|
|
<span class="fa fa-times">
|
|
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 48 48" width="24px" height="24px">
|
|
<path d="M38 12.83l-2.83-2.83-11.17 11.17-11.17-11.17-2.83 2.83 11.17 11.17-11.17 11.17 2.83 2.83 11.17-11.17 11.17 11.17 2.83-2.83-11.17-11.17z"></path>
|
|
</svg>
|
|
</span>
|
|
<span class="usa-sr-only">Close</span></button>
|
|
<h4>Account</h4>
|
|
</div>
|
|
<div class="account-user-info">
|
|
Logged in as:<br />
|
|
<b><span class="username" id="uname_long">username</span></b>
|
|
</div>
|
|
<div class="account-links">
|
|
<ul class="usa-unstyled-list">
|
|
<li><a id="account_myncbi" href="/myncbi/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_myncbi">Dashboard</a></li>
|
|
<li><a id="account_pubs" href="/myncbi/collections/bibliography/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_pubs">Publications</a></li>
|
|
<li><a id="account_settings" href="/account/settings/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_settings">Account settings</a></li>
|
|
<li><a id="account_logout" href="/account/signout/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_logout">Log out</a></li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
</div>
|
|
</div>
|
|
</header>
|
|
<div role="navigation" aria-label="access keys">
|
|
<a id="nws_header_accesskey_0" href="https://www.ncbi.nlm.nih.gov/guide/browsers/#ncbi_accesskeys" class="usa-sr-only" accesskey="0" tabindex="-1">Access keys</a>
|
|
<a id="nws_header_accesskey_1" href="https://www.ncbi.nlm.nih.gov" class="usa-sr-only" accesskey="1" tabindex="-1">NCBI Homepage</a>
|
|
<a id="nws_header_accesskey_2" href="/myncbi/" class="set-base-url usa-sr-only" accesskey="2" tabindex="-1">MyNCBI Homepage</a>
|
|
<a id="nws_header_accesskey_3" href="#maincontent" class="usa-sr-only" accesskey="3" tabindex="-1">Main Content</a>
|
|
<a id="nws_header_accesskey_4" href="#" class="usa-sr-only" accesskey="4" tabindex="-1">Main Navigation</a>
|
|
</div>
|
|
<section data-section="Alerts">
|
|
<div class="ncbi-alerts-placeholder"></div>
|
|
</section>
|
|
</div>
|
|
<div class="header">
|
|
<div class="res_logo"><h1 class="res_name"><a href="/books/" title="Bookshelf home">Bookshelf</a></h1><h2 class="res_tagline"></h2></div>
|
|
<div class="search"><form method="get" action="/books/"><div class="search_form"><label for="database" class="offscreen_noflow">Search database</label><select id="database"><optgroup label="Recent"><option value="books" selected="selected" data-ac_dict="bookshelf-search">Books</option><option value="nuccore">Nucleotide</option><option value="gquery">All Databases</option><option value="refseq" class="last">RefSeq</option></optgroup><optgroup label="All"><option value="gquery">All Databases</option><option value="assembly">Assembly</option><option value="biocollections">Biocollections</option><option value="bioproject">BioProject</option><option value="biosample">BioSample</option><option value="books" data-ac_dict="bookshelf-search">Books</option><option value="clinvar">ClinVar</option><option value="cdd">Conserved Domains</option><option value="gap">dbGaP</option><option value="dbvar">dbVar</option><option value="gene">Gene</option><option value="genome">Genome</option><option value="gds">GEO DataSets</option><option value="geoprofiles">GEO Profiles</option><option value="gtr">GTR</option><option value="ipg">Identical Protein Groups</option><option value="medgen">MedGen</option><option value="mesh">MeSH</option><option value="nlmcatalog">NLM Catalog</option><option value="nuccore">Nucleotide</option><option value="omim">OMIM</option><option value="pmc">PMC</option><option value="protein">Protein</option><option value="proteinclusters">Protein Clusters</option><option value="protfam">Protein Family Models</option><option value="pcassay">PubChem BioAssay</option><option value="pccompound">PubChem Compound</option><option value="pcsubstance">PubChem Substance</option><option value="pubmed">PubMed</option><option value="snp">SNP</option><option value="sra">SRA</option><option value="structure">Structure</option><option value="taxonomy">Taxonomy</option><option value="toolkit">ToolKit</option><option value="toolkitall">ToolKitAll</option><option value="toolkitbookgh">ToolKitBookgh</option></optgroup></select><div class="nowrap"><label for="term" class="offscreen_noflow" accesskey="/">Search term</label><div class="nowrap"><input type="text" name="term" id="term" title="Search Books. Use up and down arrows to choose an item from the autocomplete." value="" class="jig-ncbiclearbutton jig-ncbiautocomplete" data-jigconfig="dictionary:'bookshelf-search',disableUrl:'NcbiSearchBarAutoComplCtrl'" autocomplete="off" data-sbconfig="ds:'no',pjs:'no',afs:'no'" /></div><button id="search" type="submit" class="button_search nowrap" cmd="go">Search</button></div></div></form><ul class="searchlinks inline_list"><li>
|
|
<a href="/books/browse/">Browse Titles</a>
|
|
</li><li>
|
|
<a href="/books/advanced/">Advanced</a>
|
|
</li><li class="help">
|
|
<a href="/books/NBK3833/">Help</a>
|
|
</li><li class="disclaimer">
|
|
<a target="_blank" data-ga-category="literature_resources" data-ga-action="link_click" data-ga-label="disclaimer_link" href="https://www.ncbi.nlm.nih.gov/books/about/disclaimer/">Disclaimer</a>
|
|
</li></ul></div>
|
|
</div>
|
|
|
|
|
|
|
|
<!--<component id="Page" label="headcontent"/>-->
|
|
|
|
</div>
|
|
<div class="content">
|
|
<!-- site messages -->
|
|
<!-- Custom content 1 -->
|
|
<div class="col1">
|
|
|
|
</div>
|
|
|
|
<div class="container">
|
|
<div id="maincontent" class="content eight_col col">
|
|
<!-- Custom content in the left column above book nav -->
|
|
<div class="col2">
|
|
|
|
</div>
|
|
|
|
<!-- Book content -->
|
|
|
|
|
|
<!-- Custom content between navigation and content -->
|
|
<div class="col3">
|
|
|
|
</div>
|
|
|
|
<div class="source">
|
|
<div class="pre-content"><div><div class="bk_prnt"><p class="small">NCBI Bookshelf. A service of the National Library of Medicine, National Institutes of Health.</p></div><div class="messagearea bk_noprnt" style="margin-bottom:1.3846em "><ul class="messages"><li class="warn icon"><span class="icon">This publication is provided for historical reference only and the information may be out of date.</span></li></ul></div><div class="bk_prnt"><p style="color:red;"><strong>This publication is provided for historical reference only and the information may be out of date.</strong></p></div><div class="pagination bk_noprnt"><span class="inactive page_link prev">< Prev</span><a class="active page_link next" href="/books/n/helpsnpfaq/QuickStart/" title="Next page in this title">Next ></a></div></div></div>
|
|
<div class="main-content lit-style" itemscope="itemscope" itemtype="http://schema.org/Book"><div class="meta-content fm-sec"><div class="iconblock whole_rhythm clearfix no_top_margin"><a href="http://www.ncbi.nlm.nih.gov/projects/SNP/" title="National Center for Biotechnology Information (US)" class="img_link icnblk_img" ref="pagearea=logo&targetsite=external&targetcat=link&targettype=publisher"><img class="source-thumb" src="/corehtml/pmc/pmcgifs/bookshelf/thumbs/th-helpsnpfaq-lrg.png" alt="Cover of SNP FAQ Archive" /></a><div class="icnblk_cntnt"><h1 id="_NBK3848_"><span itemprop="name">SNP FAQ Archive</span></h1><div class="half_rhythm">Bethesda (MD): <a href="http://www.ncbi.nlm.nih.gov/" ref="pagearea=meta&targetsite=external&targetcat=link&targettype=publisher"><span itemprop="publisher">National Center for Biotechnology Information (US)</span></a>; <span itemprop="datePublished">2005</span>-.</div><div class="half_rhythm"><ul class="inline_list"><li><span class="label"><a data-jig="ncbidialog" href="#_ncbi_dlg_cpyrght_NBK3848" data-jigconfig="modal:true">Copyright and
|
|
Permissions</a></span></li></ul></div><div id="_ncbi_dlg_cpyrght_NBK3848" style="display:none" title="Copyright and Permissions"><div>This publication is in the public domain. For more information, see the <a href="/books/about/copyright/">Bookshelf Copyright Notice</a>.</div></div></div></div></div><div class="body-content whole_rhythm" itemprop="text"><div itemprop="description"><p>This book contains actual questions asked by dbSNP and dbMHC users. We have tried to compile questions and answers that are representative of the entire spectrum of questions that our users ask, regardless of whether or not they are frequently asked. It is therefore likely that the question you have now, or a variant of it, may have been asked before, and may be in this book. The book will be updated with new questions regularly.</p><p>The questions and their answers have been edited for clarity and to protect the privacy of our users.</p><p>If you have a question about the SNP FAQ archive, or have a question you would like to see included in the archive, please contact <a href="mailto:dev@null" data-email="vog.hin.mln.ibcn@nimda-pns" class="oemail">vog.hin.mln.ibcn@nimda-pns</a>
|
|
</p></div><div><h2>Contents</h2><div class="bktoc_all_cntnr top align_right" style="display:none"><ul class="inline_list_right"><li><a class="bktoc_all_exp" href="#">Expand All</a></li><li style="margin-left:.8em"><a class="bktoc_all_clps" href="#">Collapse All</a></li></ul></div><ul id="toc_tllNBK3848_toc_QuickStart" class="simple-list toc toc-toggle"><li class="half_rhythm" id="toc_itm_NBK3848_toc_QuickStart"><a class="toc-item" href="/books/n/helpsnpfaq/QuickStart/">dbSNP Submission Quick Start</a><div class="small">Created: April 6, 2007; Last Update: February 24, 2014.</div><ul id="toc_lst_NBK3848_toc_QuickStart" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_Begin_Sub"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_Begin_Sub/">Beginning the Submission Process</a><div class="small">Created: April 6, 2007; Last Update: February 24, 2014.</div><ul id="toc_lst_NBK3848_toc_Qckstrt_Begin_Sub" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_Begin_Sub_CreatingUsing_a_Handle"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_Begin_Sub/#Qckstrt_Begin_Sub.CreatingUsing_a_Handle">Creating/Using a Handle</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_Sub_frmt"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_Sub_frmt/">Choosing a Submission Format</a><div class="small">Created: April 6, 2007; Last Update: February 24, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_VCF_Submiss"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_VCF_Submiss/">VCF Submissions</a><div class="small">Created: April 6, 2007; Last Update: February 24, 2014.</div><ul id="toc_lst_NBK3848_toc_Qckstrt_VCF_Submiss" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_VCF_Submiss_Using_the_VCF_Excel"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_VCF_Submiss/#Qckstrt_VCF_Submiss.Using_the_VCF_Excel">Using the VCF Excel Submission Template to create a Submission</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_VCF_Submiss_VCF_Reporting_Varian"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_VCF_Submiss/#Qckstrt_VCF_Submiss.VCF_Reporting_Varian">VCF: Reporting Variant Positions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_VCF_Submiss_VCF_Reporting_Varian_1"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_VCF_Submiss/#Qckstrt_VCF_Submiss.VCF_Reporting_Varian_1">VCF: Reporting Variant Position and Resulting Submitted SNP (ss) and Reference SNP (rs) ID Assignment</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_FlatFile_Sub"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_FlatFile_Sub/">Flat File Submissions</a><div class="small">Created: April 6, 2007; Last Update: February 24, 2014.</div><ul id="toc_lst_NBK3848_toc_Qckstrt_FlatFile_Sub" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_FlatFile_Sub_Documentation_Requi"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_FlatFile_Sub/#Qckstrt_FlatFile_Sub.Documentation_Requi">Documentation Required for a Flat File Submission</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_FlatFile_Sub_Choosing_which_Flat"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_FlatFile_Sub/#Qckstrt_FlatFile_Sub.Choosing_which_Flat">Choosing which Flat File Excel Submission Template(s) to Use</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_FlatFile_Sub_Using_the_Excel_Sub"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_FlatFile_Sub/#Qckstrt_FlatFile_Sub.Using_the_Excel_Sub">Using the Excel Submission Templates and Creating a Submission</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_Submit_Data"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_Submit_Data/">Submitting Data and Submission Processing</a><div class="small">Created: April 6, 2007; Last Update: February 24, 2014.</div><ul id="toc_lst_NBK3848_toc_Qckstrt_Submit_Data" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_Submit_Data_Publication_Issues"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_Submit_Data/#Qckstrt_Submit_Data.Publication_Issues">Publication Issues</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_Submit_Data_Data_Types_that_can"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_Submit_Data/#Qckstrt_Submit_Data.Data_Types_that_can">Data Types that can be Submitted to dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Qckstrt_Submit_Data_Using_your_Handle_to"><a class="toc-item" href="/books/n/helpsnpfaq/Qckstrt_Submit_Data/#Qckstrt_Submit_Data.Using_your_Handle_to">Using your Handle to Find your Assigned ss Numbers in dbSNP</a></li></ul></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Search"><a class="toc-item" href="/books/n/helpsnpfaq/Search/">Searching dbSNP for Variations and Variation Data</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Search" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_General_dbSNP_S"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_General_dbSNP_S/">General dbSNP Search Options</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_General_dbSNP_S" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_General_dbSNP_S_Introduction_to_Sea"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_General_dbSNP_S/#Srch_General_dbSNP_S.Introduction_to_Sea">Introduction to Searching dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_General_dbSNP_S_Using_the_Search_Fi"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_General_dbSNP_S/#Srch_General_dbSNP_S.Using_the_Search_Fi">Using the Search Filter Options</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_General_dbSNP_S_Direct_Database_Que"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_General_dbSNP_S/#Srch_General_dbSNP_S.Direct_Database_Que">Direct Database Queries</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_General_dbSNP_S_Entrez_SNP"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_General_dbSNP_S/#Srch_General_dbSNP_S.Entrez_SNP">Entrez SNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_General_dbSNP_S_Search_using_a_List"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_General_dbSNP_S/#Srch_General_dbSNP_S.Search_using_a_List">Search using a List of dbSNP ID Numbers</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_General_dbSNP_S_bioMart_Type_Search"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_General_dbSNP_S/#Srch_General_dbSNP_S.bioMart_Type_Search">bioMart Type Search Function</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Locating_and_An"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Locating_and_An/">Locating and Analyzing SNPs Associated with Disease Causing Mutations</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_Locating_and_An" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Locating_and_An_dbSNP_Locus_Specifi"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Locating_and_An/#Srch_Locating_and_An.dbSNP_Locus_Specifi">dbSNP Locus Specific Database (LSDB)/Clinical Resources</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Locating_and_An_Locating_SNPs_Assoc"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Locating_and_An/#Srch_Locating_and_An.Locating_SNPs_Assoc">Locating SNPs Associated with Disease Causing Mutations</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Locating_and_An_Analysis_of_SNP_Dat"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Locating_and_An/#Srch_Locating_and_An.Analysis_of_SNP_Dat">Analysis of SNP Data Associated with a Specific Disease</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/">Locating SNPs in a Gene or in Genes</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_Lct_SNPs_Gene" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_SNPs_in_a_Sp"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_SNPs_in_a_Sp">Locating SNPs in a Specific Gene</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_SNPs_in_a_Ge"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_SNPs_in_a_Ge">Locating SNPs in a Gene in a Graphical Format</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_a_SNP_in_a_G"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_a_SNP_in_a_G">Locating a SNP in a Gene Using a Gene Name</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_SNPs_in_a_Na"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_SNPs_in_a_Na">Locating SNPs in a Named Gene</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_a_Specific_V"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_a_Specific_V">Locating a Specific Variation Type in a Named Gene</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_a_SNP_in_a_G_1"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_a_SNP_in_a_G_1">Locating a SNP in a Gene using an Amino Acid Variation</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_SNPs_in_Spec"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_SNPs_in_Spec">Locating SNPs in Specific Regions within a Gene</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_SNPs_in_Mult"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_SNPs_in_Mult">Locating SNPs in Multiple Copy Genes</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_SNPs_in_Gene"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_SNPs_in_Gene">Locating SNPs in Genes from a Specific Population</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_Genes_that_C"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_Genes_that_C">Locating Genes that Contain a Large Number of SNPs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_SNP_Informat"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_SNP_Informat">Locating SNP Information for a Large Number of Genes</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_SNPs_in_Prom"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_SNPs_in_Prom">Locating SNPs in Promoters</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_SNPs_in_Exon"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_SNPs_in_Exon">Locating SNPs in Exons/Introns</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_Exon_StartEn"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_Exon_StartEn">Locating Exon Start/End positions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_SNPs_in_Stop"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_SNPs_in_Stop">Locating SNPs in Stop Codons</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_Gene_Locating_SNPs_in_Inte"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_Gene/#Srch_Lct_SNPs_Gene.Locating_SNPs_in_Inte">Locating SNPs in Intergenic Regions</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_chromo"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_chromo/">Locating SNPs in (a) Chromosome(s)</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_Lct_SNPs_chromo" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_chromo_Finding_SNPs_in_Spe"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_chromo/#Srch_Lct_SNPs_chromo.Finding_SNPs_in_Spe">Finding SNPs in Specific Chromosome Regions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_chromo_Finding_SNPs_using"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_chromo/#Srch_Lct_SNPs_chromo.Finding_SNPs_using">Finding SNPs using a Map of a Specific Chromosome Region</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_chromo_Finding_SNPs_that_h"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_chromo/#Srch_Lct_SNPs_chromo.Finding_SNPs_that_h">Finding SNPs that hit in Multiple Locations</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_chromo_Finding_a_Report_Co"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_chromo/#Srch_Lct_SNPs_chromo.Finding_a_Report_Co">Finding a Report Containing Chromosome/Physical Positions for each rs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_chromo_Using_Entrez_to_Fin"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_chromo/#Srch_Lct_SNPs_chromo.Using_Entrez_to_Fin">Using Entrez to Find SNPs in a Chromosome</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_chromo_Using_a_List_of_ref"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_chromo/#Srch_Lct_SNPs_chromo.Using_a_List_of_ref">Using a List of refSNP(rs) Numbers to get a List of Chromosome Positions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_chromo_Finding_Chromosomal"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_chromo/#Srch_Lct_SNPs_chromo.Finding_Chromosomal">Finding Chromosomal Coordinates for a SNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_chromo_Finding_Chromosome"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_chromo/#Srch_Lct_SNPs_chromo.Finding_Chromosome">Finding Chromosome Positions of Microsatellite Markers</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_chromo_Identification_of_Y"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_chromo/#Srch_Lct_SNPs_chromo.Identification_of_Y">Identification of Y Chromosome Specific SNPs</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Locating_ENCODE"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Locating_ENCODE/">Locating ENCODE (Encyclopedia Of DNA Elements) Project SNPs</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Lct_SNPs_prot"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Lct_SNPs_prot/">Locating SNPs in a Protein Family</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_primer"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_primer/">Searching for SNP Primer Sequences</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_SNP_primer" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_primer_Commercial_Primer_Synthe"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_primer/#Srch_SNP_primer.Commercial_Primer_Synthe">Commercial Primer Synthesis Firms</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_NCBI"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_NCBI/">Searching for SNPs in a NCBI Genome Build and in BAC Clones</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_SNP_NCBI" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_NCBI_Searching_for_SNPs_contain"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_NCBI/#Srch_SNP_NCBI.Searching_for_SNPs_contain">Searching for SNPs contained in the NCBI Genome Build</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_NCBI_Searching_for_SNPs_in_BAC"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_NCBI/#Srch_SNP_NCBI.Searching_for_SNPs_in_BAC">Searching for SNPs in BAC Clones</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Searching_for_a"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Searching_for_a/">Searching for a Class of Variations in dbSNP</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_Searching_for_a" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Searching_for_a_Searching_for_indel"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Searching_for_a/#Srch_Searching_for_a.Searching_for_indel">Searching for indels in dbSNP</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_ID"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_ID/">Searching for SNPs or Specific SNP Data Using a Specific ID</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_SNP_ID" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_ID_Locating_SNPs_using_Affymetr"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_ID/#Srch_SNP_ID.Locating_SNPs_using_Affymetr">Locating SNPs using Affymetrix IDs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_ID_Locating_SNPs_using_Celera_I"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_ID/#Srch_SNP_ID.Locating_SNPs_using_Celera_I">Locating SNPs using Celera IDs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_ID_Locating_SNPs_using_HGVS_Rec"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_ID/#Srch_SNP_ID.Locating_SNPs_using_HGVS_Rec">Locating SNPs using HGVS Recommended Nomenclature</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_ID_Locating_SNPs_using_Seattle"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_ID/#Srch_SNP_ID.Locating_SNPs_using_Seattle">Locating SNPs using Seattle SNPs IDs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_ID_Locating_SNPs_using_STS_IDs"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_ID/#Srch_SNP_ID.Locating_SNPs_using_STS_IDs">Locating SNPs using STS IDs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_ID_Locating_SNPs_using_PubMed_I"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_ID/#Srch_SNP_ID.Locating_SNPs_using_PubMed_I">Locating SNPs using PubMed ID</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_ID_Locating_SNPs_using_CGAP_IDs"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_ID/#Srch_SNP_ID.Locating_SNPs_using_CGAP_IDs">Locating SNPs using CGAP IDs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_ID_Locating_SNPs_using_BAC_Clon"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_ID/#Srch_SNP_ID.Locating_SNPs_using_BAC_Clon">Locating SNPs using BAC Clone IDs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_ID_Locating_Specific_Data_Using"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_ID/#Srch_SNP_ID.Locating_Specific_Data_Using">Locating Specific Data Using RefSNP(rs) or Submitted SNP(ss) ID</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_ID_Locating_SNPs_using_IDs_Publ"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_ID/#Srch_SNP_ID.Locating_SNPs_using_IDs_Publ">Locating SNPs using IDs Published in the Literature</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Using_SNP_IDs_t"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Using_SNP_IDs_t/">Using SNP IDs to Find Genbank Accessions, and Vice Versa</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_kwd"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_kwd/">Searching for SNPs Using Key Words, Names (Gene, Author, etc.), or Citations</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_SNP_kwd" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_kwd_Finding_SNPs_cited_in_PubMe"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_kwd/#Srch_SNP_kwd.Finding_SNPs_cited_in_PubMe">Finding SNPs cited in PubMed</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_kwd_Finding_SNPs_using_an_Organ"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_kwd/#Srch_SNP_kwd.Finding_SNPs_using_an_Organ">Finding SNPs using an Organism Name</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_kwd_Finding_SNPs_using_a_Gene_N"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_kwd/#Srch_SNP_kwd.Finding_SNPs_using_a_Gene_N">Finding SNPs using a Gene Name</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_kwd_Finding_SNPs_using_a_Mutati"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_kwd/#Srch_SNP_kwd.Finding_SNPs_using_a_Mutati">Finding SNPs using a Mutation Name</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_kwd_Finding_SNPs_Using_a_Key_Wo"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_kwd/#Srch_SNP_kwd.Finding_SNPs_Using_a_Key_Wo">Finding SNPs Using a Key Word</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_kwd_Finding_SNPs_using_a_Submit"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_kwd/#Srch_SNP_kwd.Finding_SNPs_using_a_Submit">Finding SNPs using a Submitter’s Name</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_EST"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_EST/">Searching for SNPs Using Positional Data or EST Alignments</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_SNP_EST" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_EST_Searching_for_SNPs_Using_Po"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_EST/#Srch_SNP_EST.Searching_for_SNPs_Using_Po">Searching for SNPs Using Positional Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_EST_Searching_for_SNPs_Using_ES"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_EST/#Srch_SNP_EST.Searching_for_SNPs_Using_ES">Searching for SNPs Using EST Alignments</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/">Retrieving Specific Data for a SNP</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_Retrieving_Spec" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Contact_Inf"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Contact_Inf">Finding Contact Information for an Individual Submitter</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_out_which_S"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_out_which_S">Finding out which SNPs are Repeated and which have Multiple Submissions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_SNP_Citatio"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_SNP_Citatio">Finding SNP Citations (SNP Publication Details)</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_a_Gene_Name"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_a_Gene_Name">Finding a Gene Name associated with a refSNP (rs) number</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Gene_IDs_as"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Gene_IDs_as">Finding Gene IDs associated with a refSNP (rs) number</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_the_Genetic"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_the_Genetic">Finding the Genetic Position of a SNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Strain_Info"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Strain_Info">Finding Strain Information for Submitted SNPs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_CpG_Island"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_CpG_Island">Finding CpG Island Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Flanking_Se"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Flanking_Se">Finding Flanking Sequence Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_SNPs_that_L"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_SNPs_that_L">Finding SNPs that Lead to Premature Stop Codons</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Proximal_Ne"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Proximal_Ne">Finding Proximal (Neighboring) SNPs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Wildtype_Am"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Wildtype_Am">Finding Wildtype Amino Acid</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Functional"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Functional">Finding Functional (Synonymous/Non-synonymous, etc.) Information for a SNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Hardy_Weinb"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Hardy_Weinb">Finding Hardy Weinburg Probabilities</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_HapTagged_S"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_HapTagged_S">Finding Hap-Tagged SNPs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Specific_He"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Specific_He">Finding Specific Hetrerozygosity Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Orientation"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Orientation">Finding Orientation Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Organism_Pl"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Organism_Pl">Finding Organism Ploidy</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Records_wit"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Records_wit">Finding Records with OMIM Data/Links</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Reference_A"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Reference_A">Finding Reference Alleles</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Records_for"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Records_for">Finding Records for a Race or Specific Population</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Sample_Size"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Sample_Size">Finding Sample Size Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_TabDelimite"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_TabDelimite">Finding Tab-Delimited Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_Validation"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_Validation">Finding Validation Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Retrieving_Spec_Finding_out_why_a_S"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Retrieving_Spec/#Srch_Retrieving_Spec.Finding_out_why_a_S">Finding out why a SNP has been Withdrawn</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_genotype"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_genotype/">Searching for SNP Genotype, Allele and Frequency Data</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_SNP_genotype" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_genotype_Searching_for_SNP_Geno"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_genotype/#Srch_SNP_genotype.Searching_for_SNP_Geno">Searching for SNP Genotype Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_genotype_Searching_for_SNP_Alle"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_genotype/#Srch_SNP_genotype.Searching_for_SNP_Alle">Searching for SNP Allele Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_genotype_Searching_for_SNP_Freq"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_genotype/#Srch_SNP_genotype.Searching_for_SNP_Freq">Searching for SNP Frequency Data</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Batch_Query_Ret"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Batch_Query_Ret/">Batch Query: Retrieving information for a large numbers of SNPs</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_Batch_Query_Ret" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Batch_Query_Ret_Conducting_BATCH_Qu"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Batch_Query_Ret/#Srch_Batch_Query_Ret.Conducting_BATCH_Qu">Conducting BATCH Queries using Specific ID Types</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Batch_Query_Ret_Retrieving_Specific"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Batch_Query_Ret/#Srch_Batch_Query_Ret.Retrieving_Specific">Retrieving Specific Data using BATCH Query</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Batch_Query_Ret_BATCH_Reports"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Batch_Query_Ret/#Srch_Batch_Query_Ret.BATCH_Reports">BATCH Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Batch_Query_Ret_BATCH_Query_Limits"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Batch_Query_Ret/#Srch_Batch_Query_Ret.BATCH_Query_Limits">BATCH Query Limits</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Batch_Query_Ret_BATCH_Query_Errors"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Batch_Query_Ret/#Srch_Batch_Query_Ret.BATCH_Query_Errors">BATCH Query Errors</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Searching_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Searching_dbSNP/">Searching dbSNP using Sequence Data Homology (Search using BLAST)</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_Searching_dbSNP" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Searching_dbSNP_Basic_BLAST_Search"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Searching_dbSNP/#Srch_Searching_dbSNP.Basic_BLAST_Search">Basic BLAST Search Strategies</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Searching_dbSNP_Search_dbSNP_using"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Searching_dbSNP/#Srch_Searching_dbSNP.Search_dbSNP_using">Search dbSNP using a Sequence</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Searching_dbSNP_BLASTing_a_Batch_of"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Searching_dbSNP/#Srch_Searching_dbSNP.BLASTing_a_Batch_of">BLASTing a Batch of Sequences</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Searching_dbSNP_Searching_dbSNP_usi"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Searching_dbSNP/#Srch_Searching_dbSNP.Searching_dbSNP_usi">Searching dbSNP using Primer Sequence</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Searching_dbSNP_Searching_for_SNPs"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Searching_dbSNP/#Srch_Searching_dbSNP.Searching_for_SNPs">Searching for SNPs not yet Submitted to dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Searching_dbSNP_Unable_to_get_Seque"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Searching_dbSNP/#Srch_Searching_dbSNP.Unable_to_get_Seque">Unable to get Sequence Comparison Results</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Searching_dbSNP_Looking_for_SNP_BLA"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Searching_dbSNP/#Srch_Searching_dbSNP.Looking_for_SNP_BLA">Looking for SNP BLAST URL that Includes pre-set Parameters</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_rawseq"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_rawseq/">Searching for SNPs in Raw Sequence Data</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_mouse"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_mouse/">Searching for SNPs between Mouse Strains</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_stats"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_stats/">Searching for Statistics, Data Histories and Historical Data in dbSNP</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_SNP_stats" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_stats_Searching_for_dbSNP_Stati"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_stats/#Srch_SNP_stats.Searching_for_dbSNP_Stati">Searching for dbSNP Statistics</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_stats_Searching_for_Data_Histor"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_stats/#Srch_SNP_stats.Searching_for_Data_Histor">Searching for Data Histories and Historical Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_stats_Finding_a_Build_Number_Ba"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_stats/#Srch_SNP_stats.Finding_a_Build_Number_Ba">Finding a Build Number Based on a Date and Vice Versa</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_stats_Searching_for_SNP_Entry_D"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_stats/#Srch_SNP_stats.Searching_for_SNP_Entry_D">Searching for SNP Entry Dates for Patent Purposes</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_SNP_structural"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_SNP_structural/">Searching for Structural (Copy Number) Variations</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_eSearch_Program"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_eSearch_Program/">eSearch (Programmatic Searches)</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_eSearch_Program" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_eSearch_Program_Discrepancies_Betwe"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_eSearch_Program/#Srch_eSearch_Program.Discrepancies_Betwe">Discrepancies Between Esearch Results and Direct SQL Queries</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Search_Result_D"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Search_Result_D/">Search Result Discrepancies</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_Search_Result_D" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Search_Result_D_Discrepancies_betwe"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Search_Result_D/#Srch_Search_Result_D.Discrepancies_betwe">Discrepancies between Web-based Search and Local Copy Search</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Search_Result_D_Discrepancies_betwe_1"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Search_Result_D/#Srch_Search_Result_D.Discrepancies_betwe_1">Discrepancies between Web-based Search and SeqView Search</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Search_Result_D_Discrepancies_betwe_2"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Search_Result_D/#Srch_Search_Result_D.Discrepancies_betwe_2">Discrepancies between dbSNP and ENSEMBL Searches</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Errors_that_Occ"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Errors_that_Occ/">Errors that Occur While Searching</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div><ul id="toc_lst_NBK3848_toc_Srch_Errors_that_Occ" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Errors_that_Occ_Unable_to_Find_an_r"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Errors_that_Occ/#Srch_Errors_that_Occ.Unable_to_Find_an_r">Unable to Find an rs Number</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Errors_that_Occ_Unable_to_find_SNPs"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Errors_that_Occ/#Srch_Errors_that_Occ.Unable_to_find_SNPs">Unable to find SNPs for Specific Organism</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Errors_that_Occ_Errors_using_Specif"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Errors_that_Occ/#Srch_Errors_that_Occ.Errors_using_Specif">Errors using Specific Search Terms</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Errors_that_Occ_Errors_using_Specif_1"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Errors_that_Occ/#Srch_Errors_that_Occ.Errors_using_Specif_1">Errors using Specific Search Filters</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Errors_that_Occ_Errors_Searching_wi"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Errors_that_Occ/#Srch_Errors_that_Occ.Errors_Searching_wi">Errors Searching with rs or ss Numbers</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Errors_that_Occ_Runtime_Error_Messa"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Errors_that_Occ/#Srch_Errors_that_Occ.Runtime_Error_Messa">Runtime Error Message while Using Entrez SNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Errors_that_Occ_Errors_using_Entrez"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Errors_that_Occ/#Srch_Errors_that_Occ.Errors_using_Entrez">Errors using Entrez Batch upload</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Srch_Unable_to_Find_"><a class="toc-item" href="/books/n/helpsnpfaq/Srch_Unable_to_Find_/">Unable to Find Published SNP in dbSNP</a><div class="small">Created: July 7, 2005; Last Update: February 25, 2014.</div></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Submit"><a class="toc-item" href="/books/n/helpsnpfaq/Submit/">Submitting Variations and Variation Data to dbSNP</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Submit" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Hand"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Hand/">Submission Handles</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Sbmt_Submission_Hand" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Hand_Requesting_a_Handle"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Hand/#Sbmt_Submission_Hand.Requesting_a_Handle">Requesting a Handle</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Hand_Handle_Naming_Conve"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Hand/#Sbmt_Submission_Hand.Handle_Naming_Conve">Handle Naming Convention</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Hand_Changing_Contact_In"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Hand/#Sbmt_Submission_Hand.Changing_Contact_In">Changing Contact Information for a Handle</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Hand_Handle_Case_Sensiti"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Hand/#Sbmt_Submission_Hand.Handle_Case_Sensiti">Handle Case Sensitivity</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Hand_Requesting_a_Handle_1"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Hand/#Sbmt_Submission_Hand.Requesting_a_Handle_1">Requesting a Handle for Partners within a Consortium</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Hand_Handle_belongs_to_P"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Hand/#Sbmt_Submission_Hand.Handle_belongs_to_P">Handle belongs to PI or PhD Student?</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Hand_Submitting_under_an"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Hand/#Sbmt_Submission_Hand.Submitting_under_an">Submitting under an Existing Handle</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Hand_Handles_and_Multipl"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Hand/#Sbmt_Submission_Hand.Handles_and_Multipl">Handles and Multiple Submitters</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Requirements_fo"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Requirements_fo/">Requirements for dbSNP Submissions</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Sbmt_Requirements_fo" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Requirements_fo_GenBank_Accession_N"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Requirements_fo/#Sbmt_Requirements_fo.GenBank_Accession_N">GenBank Accession Numbers</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Organism_Data_A"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Organism_Data_A/">Organism Data Accepted by dbSNP</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Vari"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Vari/">Submitting Various Data Types to dbSNP</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Sbmt_Submitting_Vari" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Vari_Mutation_Submission"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Vari/#Sbmt_Submitting_Vari.Mutation_Submission">Mutation Submissions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Vari_Negative_Data_Submi"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Vari/#Sbmt_Submitting_Vari.Negative_Data_Submi">Negative Data Submissions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Vari_Reporting_Alleles"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Vari/#Sbmt_Submitting_Vari.Reporting_Alleles">Reporting Alleles</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Vari_Genotype_Submission"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Vari/#Sbmt_Submitting_Vari.Genotype_Submission">Genotype Submissions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Vari_Frequency_Data_Subm"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Vari/#Sbmt_Submitting_Vari.Frequency_Data_Subm">Frequency Data Submissions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Vari_Microsatellite_Data"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Vari/#Sbmt_Submitting_Vari.Microsatellite_Data">Microsatellite Data Submissions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Vari_Structural_Variant"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Vari/#Sbmt_Submitting_Vari.Structural_Variant">Structural Variant Data Submissions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Vari_Submission_of_Multi"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Vari/#Sbmt_Submitting_Vari.Submission_of_Multi">Submission of Multiple Linked SNPs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Vari_Submission_of_Data"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Vari/#Sbmt_Submitting_Vari.Submission_of_Data">Submission of Data Found Using Various Methods</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Vari_Submission_of_Previ"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Vari/#Sbmt_Submitting_Vari.Submission_of_Previ">Submission of Previously Published SNPs</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_The_dbSNP_Excel"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_The_dbSNP_Excel/">The dbSNP Excel Submission Template</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_the"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_the/">Filling out the Submission Worksheets</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Sbmt_Filling_out_the" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_the_Which_Worksheet_to"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_the/#Sbmt_Filling_out_the.Which_Worksheet_to">Which Worksheet to Use</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_the_General_Instruction"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_the/#Sbmt_Filling_out_the.General_Instruction">General Instructions for all Three Worksheets</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_the_Submitting_Addition"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_the/#Sbmt_Filling_out_the.Submitting_Addition">Submitting Additional Information</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_the_The_SNPASSAY_Worksh"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_the/#Sbmt_Filling_out_the.The_SNPASSAY_Worksh">The SNPASSAY Worksheet</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_the_The_SNPINDUSE_Works"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_the/#Sbmt_Filling_out_the.The_SNPINDUSE_Works">The SNPINDUSE Worksheet</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_the_The_SNPPOPUSE_Works"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_the/#Sbmt_Filling_out_the.The_SNPPOPUSE_Works">The SNPPOPUSE Worksheet</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_Spe"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_Spe/">Filling out Specific Sections/Fields within a Submission Worksheet</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Sbmt_Filling_out_Spe" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_Spe_The_ACCESSION_field"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_Spe/#Sbmt_Filling_out_Spe.The_ACCESSION_field">The ACCESSION field</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_Spe_The_SNP_ID_field"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_Spe/#Sbmt_Filling_out_Spe.The_SNP_ID_field">The SNP_ID field</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_Spe_The_POPULATION_sect"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_Spe/#Sbmt_Filling_out_Spe.The_POPULATION_sect">The POPULATION section</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_Spe_The_POP_ID_field"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_Spe/#Sbmt_Filling_out_Spe.The_POP_ID_field">The POP: ID field</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_Spe_The_METHOD_CLASS_fi"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_Spe/#Sbmt_Filling_out_Spe.The_METHOD_CLASS_fi">The METHOD_CLASS field</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_Spe_The_Method_ID_field"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_Spe/#Sbmt_Filling_out_Spe.The_Method_ID_field">The Method: ID field</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_Spe_The_BATCH_field"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_Spe/#Sbmt_Filling_out_Spe.The_BATCH_field">The BATCH field</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_Spe_The_PUBLICATION_sec"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_Spe/#Sbmt_Filling_out_Spe.The_PUBLICATION_sec">The PUBLICATION section</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_Spe_The_SAMPLESIZE_fiel"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_Spe/#Sbmt_Filling_out_Spe.The_SAMPLESIZE_fiel">The SAMPLESIZE field</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_Spe_5_ASSAY_and_3_ASSAY"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_Spe/#Sbmt_Filling_out_Spe.5_ASSAY_and_3_ASSAY">5’_ASSAY and 3’_ASSAY fields</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Filling_out_Spe_5_FLANK_and_3_FLANK"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Filling_out_Spe/#Sbmt_Filling_out_Spe.5_FLANK_and_3_FLANK">5’_FLANK and 3’_FLANK fields</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Form"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Form/">Submission Formatting</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Sbmt_Submission_Form" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Form_General_Format_Info"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Form/#Sbmt_Submission_Form.General_Format_Info">General Format Information for Submission</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Form_Sequence_Formatting"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Form/#Sbmt_Submission_Form.Sequence_Formatting">Sequence Formatting</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Form_Allele_Formatting"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Form/#Sbmt_Submission_Form.Allele_Formatting">Allele Formatting</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Form_Formatting_Submissi"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Form/#Sbmt_Submission_Form.Formatting_Submissi">Formatting Submissions of Specific Data Types</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Automating_the_"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Automating_the_/">Automating the Submission Process</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Info"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Info/">Submitting Information for Existing SNPs</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Sbmt_Submitting_Info" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Info_Submitting_Variatio"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Info/#Sbmt_Submitting_Info.Submitting_Variatio">Submitting Variations that already exist in dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_Info_Annotating_existing"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_Info/#Sbmt_Submitting_Info.Annotating_existing">Annotating existing SNPs</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Batch_Submissio"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Batch_Submissio/">Batch Submissions and Large Submissions to dbSNP</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submitting_SNPs"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submitting_SNPs/">Submitting SNPs using a Reference Sequence Position</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_and_"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_and_/">Submission and Assignment of Submitted SNP(ss)/RefSNP(rs) Numbers</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Sbmt_Submission_and_" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_and__Submitted_SNP_ss_Nu"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_and_/#Sbmt_Submission_and_.Submitted_SNP_ss_Nu">Submitted SNP (ss) Numbers</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_and__Reference_SNP_rs_Nu"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_and_/#Sbmt_Submission_and_.Reference_SNP_rs_Nu">Reference SNP (rs) Number</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_and__Searching_for_SNPs"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_and_/#Sbmt_Submission_and_.Searching_for_SNPs">Searching for SNPs Prior to refSNP (rs) number Assignment</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_dbSNP_Submissio"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_dbSNP_Submissio/">dbSNP Submission Processing and the “Hold Until Published” (HUP) Policy</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Erro"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Erro/">Submission Errors and Submission Withdrawal</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Sbmt_Submission_Erro" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Erro_Withdrawing_Data_fr"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Erro/#Sbmt_Submission_Erro.Withdrawing_Data_fr">Withdrawing Data from dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Erro_Fixing_Errors_in_Su"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Erro/#Sbmt_Submission_Erro.Fixing_Errors_in_Su">Fixing Errors in Submitted Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Erro_Renaming_SNPs"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Erro/#Sbmt_Submission_Erro.Renaming_SNPs">Renaming SNPs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Erro_Why_Specific_RefSNP"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Erro/#Sbmt_Submission_Erro.Why_Specific_RefSNP">Why Specific RefSNPs have been withdrawn/deleted from dbSNP</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Usin"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Usin/">Submission Using dbSNP’s online Clinical/LSDB Submission Resources</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Sbmt_Submission_Usin" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Usin_Submission_using_th"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Usin/#Sbmt_Submission_Usin.Submission_using_th">Submission using the Human Variation: Search, Annotate, Submit Site</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_Submission_Usin_Submission_using_th_1"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_Submission_Usin/#Sbmt_Submission_Usin.Submission_using_th_1">Submission using the Variation Batch Submission Site</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Sbmt_External_Submis"><a class="toc-item" href="/books/n/helpsnpfaq/Sbmt_External_Submis/">External Submission Tools</a><div class="small">Created: June 6, 2005; Last Update: June 15, 2010.</div></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Reports"><a class="toc-item" href="/books/n/helpsnpfaq/Reports/">Using dbSNP Data Reports</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Reports" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Entrez_SNP_and_"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Entrez_SNP_and_/">Entrez SNP and Entrez Gene Response Pages</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Choosing_the_Da"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Choosing_the_Da/">Choosing the Data Report that Contains the Data You Need</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Finding_Informa"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Finding_Informa/">Finding Information in a dbSNP Data Report</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Rprt_Finding_Informa" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Finding_Informa_Entrez_SNP_Graphic"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Finding_Informa/#Rprt_Finding_Informa.Entrez_SNP_Graphic">Entrez SNP Graphic Summary of Search</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Finding_Informa_refSNP_rs_Cluster_R"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Finding_Informa/#Rprt_Finding_Informa.refSNP_rs_Cluster_R">refSNP (rs) Cluster Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Finding_Informa_Submitted_SNP_ss_De"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Finding_Informa/#Rprt_Finding_Informa.Submitted_SNP_ss_De">Submitted SNP (ss) Detail Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Finding_Informa_VarView"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Finding_Informa/#Rprt_Finding_Informa.VarView">VarView</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Finding_Informa_secASN_1"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Finding_Informa/#Rprt_Finding_Informa.secASN.1">ASN.1. Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Finding_Informa_Chromosome_Reports"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Finding_Informa/#Rprt_Finding_Informa.Chromosome_Reports">Chromosome Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Finding_Informa_FASTA_Reports"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Finding_Informa/#Rprt_Finding_Informa.FASTA_Reports">FASTA Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Finding_Informa_FLATFILE_Reports"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Finding_Informa/#Rprt_Finding_Informa.FLATFILE_Reports">FLATFILE Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Finding_Informa_Genotype_Reports"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Finding_Informa/#Rprt_Finding_Informa.Genotype_Reports">Genotype Reports</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Finding_Informa_XML_Reports"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Finding_Informa/#Rprt_Finding_Informa.XML_Reports">XML Reports</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Compact_SNP_dat"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Compact_SNP_dat/">Compact SNP data: The Bitfield</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Custom_Report_F"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Custom_Report_F/">Custom Report Formats</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Intrptrt_refSNP"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Intrptrt_refSNP/">Interpreting Discrepancies in refSNP Reports</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Rprt_Intrptrt_refSNP" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Intrptrt_refSNP_The__CreatedUpdated"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Intrptrt_refSNP/#Rprt_Intrptrt_refSNP.The__CreatedUpdated">The “Created/Updated” Field</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Intrptrt_refSNP_Allele_section"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Intrptrt_refSNP/#Rprt_Intrptrt_refSNP.Allele_section">Allele section</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Intrptrt_refSNP_The_Submitter_Recor"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Intrptrt_refSNP/#Rprt_Intrptrt_refSNP.The_Submitter_Recor">The Submitter Records Section</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Intrptrt_refSNP_Geneview_Section"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Intrptrt_refSNP/#Rprt_Intrptrt_refSNP.Geneview_Section">Geneview Section</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Intrptrt_refSNP_Integrated_Maps_Sec"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Intrptrt_refSNP/#Rprt_Intrptrt_refSNP.Integrated_Maps_Sec">Integrated Maps Section</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Intrptrt_refSNP_Population_Diversit"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Intrptrt_refSNP/#Rprt_Intrptrt_refSNP.Population_Diversit">Population Diversity Section (Frequency data)</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Intrptrt_refSNP_Validation_Summary"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Intrptrt_refSNP/#Rprt_Intrptrt_refSNP.Validation_Summary">Validation Summary Section</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Intrptrt_SNP"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Intrptrt_SNP/">Interpreting Discrepancies in Submitted SNP (ss) Detail Reports</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_DiscrpClstr_FTP"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_DiscrpClstr_FTP/">Discrepancies between Cluster Report Data and FTP Content</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_DiscrpClstr_gen"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_DiscrpClstr_gen/">Discrepancies between Cluster Report data and Other Genome Resources</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Field_Definitio"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Field_Definitio/">Field Definitions</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_SNP_Class_Defin"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_SNP_Class_Defin/">SNP Class Definitions</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Rprt_SNP_Class_Defin" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_SNP_Class_Defin_Functional_Class"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_SNP_Class_Defin/#Rprt_SNP_Class_Defin.Functional_Class">Functional Class</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_SNP_Class_Defin_Variation_Class"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_SNP_Class_Defin/#Rprt_SNP_Class_Defin.Variation_Class">Variation Class</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Sequence_Format"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Sequence_Format/">Sequence Formatting in dbSNP Reports</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Rprt_Sequence_Format" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Sequence_Format_Sequence_Orientatio"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Sequence_Format/#Rprt_Sequence_Format.Sequence_Orientatio">Sequence Orientation</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Sequence_Format_IUPAC_Code"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Sequence_Format/#Rprt_Sequence_Format.IUPAC_Code">IUPAC Code</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Sequence_Format_Lowercase_Small_Seq"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Sequence_Format/#Rprt_Sequence_Format.Lowercase_Small_Seq">Lowercase (Small) Sequence Lettering</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Sequence_Format_dbSNP_0based_zero_b"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Sequence_Format/#Rprt_Sequence_Format.dbSNP_0based_zero_b">dbSNP 0-based (zero based) vs. 1-based Coordinate Representation</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Sequence_Format_Flanking_Sequence"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Sequence_Format/#Rprt_Sequence_Format.Flanking_Sequence">Flanking Sequence</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Batch_Reports"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Batch_Reports/">Batch Reports</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Displaying_Repo"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Displaying_Repo/">Displaying Reports</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Links_from_dbSN"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Links_from_dbSN/">Links from dbSNP Reports to Other Online Data Resources</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Rprt_Links_from_dbSN" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Links_from_dbSN_Links_to_SNP3D_Stru"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Links_from_dbSN/#Rprt_Links_from_dbSN.Links_to_SNP3D_Stru">Links to SNP3D Structure Mapping</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Links_from_dbSN_Links_to_OMIM"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Links_from_dbSN/#Rprt_Links_from_dbSN.Links_to_OMIM">Links to OMIM</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Links_from_dbSN_Links_to_GenBank"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Links_from_dbSN/#Rprt_Links_from_dbSN.Links_to_GenBank">Links to GenBank</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Links_from_dbSN_Links_to_TaqMan_Ass"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Links_from_dbSN/#Rprt_Links_from_dbSN.Links_to_TaqMan_Ass">Links to TaqMan Assays</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Links_from_Othe"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Links_from_Othe/">Links from Other Online Data Resources to dbSNP Reports</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Creating_Your_O"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Creating_Your_O/">Creating Your Own Link to a dbSNP Record</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Rprt_Error_Messages_"><a class="toc-item" href="/books/n/helpsnpfaq/Rprt_Error_Messages_/">Error Messages in refSNP Cluster Reports</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Build"><a class="toc-item" href="/books/n/helpsnpfaq/Build/">The dbSNP Build Process</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Build" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Triggers_New_Bld"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Triggers_New_Bld/">What Triggers a New Build?</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_SNP_Build_Sched"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_SNP_Build_Sched/">The SNP Build Schedule/Notification of Build Release</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Data_Chng_Btwn"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Data_Chng_Btwn/">Data Changes that Occur Between Builds</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Bld_Data_Chng_Btwn" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Data_Chng_Btwn_New_dbSNP_Builds_and"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Data_Chng_Btwn/#Bld_Data_Chng_Btwn.New_dbSNP_Builds_and">New dbSNP Builds and Subsequent Changes to SNP Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Data_Chng_Btwn_New_Genome_Builds_and"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Data_Chng_Btwn/#Bld_Data_Chng_Btwn.New_Genome_Builds_and">New Genome Builds and Subsequent Changes to Linked NCBI Resources</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_LagTim_dbSNP_FTP"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_LagTim_dbSNP_FTP/">Lag Time between dbSNP Website and FTP Site Following Build</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Diff_SNP_Genome"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Diff_SNP_Genome/">The Difference Between the SNP Build and the Genome Build</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Old_vs_New_Data"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Old_vs_New_Data/">Using Old vs. New Build Data</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Find_Old_Build"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Find_Old_Build/">Finding Old Build Data</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Find_Build_Numb"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Find_Build_Numb/">Finding a Build Number Based on a Date and Vice Versa</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Mapping"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Mapping/">The dbSNP Mapping Process</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Bld_dbSNP_Mapping" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Mapping_Mapping_Weight"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Mapping/#Bld_dbSNP_Mapping.Mapping_Weight">Mapping Weight</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Mapping_How_dbSNP_Determines_S"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Mapping/#Bld_dbSNP_Mapping.How_dbSNP_Determines_S">How dbSNP Determines SNP Positions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Mapping_Chromosome_Position_an"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Mapping/#Bld_dbSNP_Mapping.Chromosome_Position_an">Chromosome Position and Contig Position</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Mapping_Locate_Disappearing_Re"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Mapping/#Bld_dbSNP_Mapping.Locate_Disappearing_Re">Locate Disappearing RefSNP (rs) Numbers</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Mapping_RefSNP_rs_Clusters_Not"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Mapping/#Bld_dbSNP_Mapping.RefSNP_rs_Clusters_Not">RefSNP (rs) Clusters Not Merging as Expected</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Mapping_Definition_of_loctype"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Mapping/#Bld_dbSNP_Mapping.Definition_of_loctype">Definition of loctype values</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Mapping_Reassigning_loctype"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Mapping/#Bld_dbSNP_Mapping.Reassigning_loctype">Reassigning loctype</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Mapping_Forward_vs_Reverse_str"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Mapping/#Bld_dbSNP_Mapping.Forward_vs_Reverse_str">Forward vs. Reverse strand Orientation</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Mapping_Sequence_Notation_for"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Mapping/#Bld_dbSNP_Mapping.Sequence_Notation_for">Sequence Notation for Variations</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Mapping_Position_Notation_for"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Mapping/#Bld_dbSNP_Mapping.Position_Notation_for">Position Notation for Variations</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Mapping_Mapping_Discrepancies"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Mapping/#Bld_dbSNP_Mapping.Mapping_Discrepancies">Mapping Discrepancies</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Mg_RefSNP_RefSNP"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Mg_RefSNP_RefSNP/">Merging RefSNP Numbers and RefSNP Clusters</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Ancest_Allele"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Ancest_Allele/">Ancestral Allele Data</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Bld_Ancest_Allele" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Ancest_Allele_Determining_Ancestral"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Ancest_Allele/#Bld_Ancest_Allele.Determining_Ancestral">Determining Ancestral Alleles</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Ancest_Allele_Annotating_Ancestral_A"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Ancest_Allele/#Bld_Ancest_Allele.Annotating_Ancestral_A">Annotating Ancestral Alleles</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Ancest_Allele_Interpreting_Ancestral"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Ancest_Allele/#Bld_Ancest_Allele.Interpreting_Ancestral">Interpreting Ancestral Allele Field in refSNP Report</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Avg_Allele_Freq"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Avg_Allele_Freq/">Average Allele Frequency Calculation</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Double_Hit_SNP"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Double_Hit_SNP/">Double Hit SNP Computation</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_HardyWeinberg_Eq"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_HardyWeinberg_Eq/">Hardy Weinberg Equilibrium Data</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Heterozygosity"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Heterozygosity/">Heterozygosity Data</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_Linkage_Disequil"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_Linkage_Disequil/">Linkage Disequilibrium Data</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_HaplotpDat"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_HaplotpDat/">dbSNP Haplotype Data</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_Haplogroup"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_Haplogroup/">dbSNP and Haplogroup Data</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_HaplotpSnp"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_HaplotpSnp/">dbSNP and Haplotype Tagged SNPs</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_HapMap"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_HapMap/">dbSNP and HapMap Data</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Bld_dbSNP_HapMap" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Bld_dbSNP_HapMap_HapMap_Genotype_Discrep"><a class="toc-item" href="/books/n/helpsnpfaq/Bld_dbSNP_HapMap/#Bld_dbSNP_HapMap.HapMap_Genotype_Discrep">HapMap Genotype Discrepancies</a></li></ul></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP/">Locating and Using Data from dbSNP’s FTP Site</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_FTP" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Navigating_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Navigating_dbSNP/">Navigating in dbSNP’s FTP Site</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_FTP_Navigating_dbSNP" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Navigating_dbSNP_FTP_Site_Organizati"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Navigating_dbSNP/#FTP_Navigating_dbSNP.FTP_Site_Organizati">FTP Site Organization</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Navigating_dbSNP_FTP_Site_Documentat"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Navigating_dbSNP/#FTP_Navigating_dbSNP.FTP_Site_Documentat">FTP Site Documentation (Docsum)</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/">Finding Specific Data in dbSNP’s FTP Files</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_FTP_Finding_Specific" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_Functional"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_Functional">Finding Functional Class Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_Population"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_Population">Finding Population Diversity Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_IDs"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_IDs">Finding IDs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_Mapping_Dat"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_Mapping_Dat">Finding Mapping Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_Sequence_Da"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_Sequence_Da">Finding Sequence Data in CSV Format</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_Microarray"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_Microarray">Finding Microarray Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_Merged_RefS"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_Merged_RefS">Finding Merged RefSNP (rs) Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_Deleted_no"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_Deleted_no">Finding Deleted (no longer used) refSNP Numbers</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_Method_Data"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_Method_Data">Finding Method Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_SNP_data_fo"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_SNP_data_fo">Finding SNP data for NCBI Genome Builds</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_Submitter_D"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_Submitter_D">Finding Submitter Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_Submitter_R"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_Submitter_R">Finding Submitter Referenced Genbank Accessions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_Validation"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_Validation">Finding Validation Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_Variation_C"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_Variation_C">Finding Variation Class Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Finding_Specific_Finding_SNPs_for_a"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Finding_Specific/#FTP_Finding_Specific.Finding_SNPs_for_a">Finding SNPs for a Specific Organism</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_SNP_Report_Files"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_SNP_Report_Files/">SNP Report Files</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_FTP_SNP_Report_Files" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_SNP_Report_Files_dbSNP_FTP_Site_Repo"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_SNP_Report_Files/#FTP_SNP_Report_Files.dbSNP_FTP_Site_Repo">dbSNP FTP Site Report Formats</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_SNP_Report_Files_FTP_File_Descriptio"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_SNP_Report_Files/#FTP_SNP_Report_Files.FTP_File_Descriptio">FTP File Descriptions and Definitions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_SNP_Report_Files_Field_Definitions"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_SNP_Report_Files/#FTP_SNP_Report_Files.Field_Definitions">Field Definitions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_SNP_Report_Files_Specific_File_Locat"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_SNP_Report_Files/#FTP_SNP_Report_Files.Specific_File_Locat">Specific File Location</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_SNP_Report_Files_Report_Formats_Not"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_SNP_Report_Files/#FTP_SNP_Report_Files.Report_Formats_Not">Report Formats Not Available on dbSNP’s FTP Site</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_dbSNP_Data_Dict"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_dbSNP_Data_Dict/">dbSNP Data Dictionary</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Missing_FTP_File"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Missing_FTP_File/">Missing FTP Files</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Download_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Download_dbSNP/">Downloading From dbSNP’s FTP Site</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_FTP_Download_dbSNP" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Download_dbSNP_Problems_Downloading"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Download_dbSNP/#FTP_Download_dbSNP.Problems_Downloading">Problems Downloading</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Decompress_data"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Decompress_data/">Decompressing Data Obtained from dbSNP’s FTP Site</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Parsing_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Parsing_dbSNP/">Parsing Data Obtained from dbSNP’s FTP Site</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_FTP_Parsing_dbSNP" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Parsing_dbSNP_Parsing_Problems"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Parsing_dbSNP/#FTP_Parsing_dbSNP.Parsing_Problems">Parsing Problems</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Discrp_dbSNP_FTP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Discrp_dbSNP_FTP/">Discrepancies between dbSNP Summary Data and FTP Data</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Discrp_Clstr_FTP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Discrp_Clstr_FTP/">Discrepancies between Cluster Report Data and FTP Data Contents</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Discrp_FTP_Data"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Discrp_FTP_Data/">Discrepancies between FTP Documentation and Data Dictionary</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Direct_Queries"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Direct_Queries/">Direct Queries of dbSNP’s Database Server</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Updating_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Updating_dbSNP/">Updating dbSNP’s FTP data</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Eutils"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Eutils/">Eutils (E-utilities)</a><div class="small">Created: July 7, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_FTP_Eutils" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Eutils_Using_eutils_to_Obtain_Specif"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Eutils/#FTP_Eutils.Using_eutils_to_Obtain_Specif">Using eutils to Obtain Specific SNP Information</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Eutils_Eutils_Workshops_and_Tutorial"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Eutils/#FTP_Eutils.Eutils_Workshops_and_Tutorial">Eutils Workshops and Tutorials</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Eutils_Eutils_Online_Documentation"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Eutils/#FTP_Eutils.Eutils_Online_Documentation">Eutils Online Documentation</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Eutils_Using_Eutils_to_Find_Specific"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Eutils/#FTP_Eutils.Using_Eutils_to_Find_Specific">Using Eutils to Find Specific Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Eutils_eFetch"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Eutils/#FTP_Eutils.eFetch">eFetch</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Eutils_eSearch"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Eutils/#FTP_Eutils.eSearch">eSearch</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_FTP_Eutils_XML_Format_for_eutils"><a class="toc-item" href="/books/n/helpsnpfaq/FTP_Eutils/#FTP_Eutils.XML_Format_for_eutils">XML Format for eutils</a></li></ul></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schema"><a class="toc-item" href="/books/n/helpsnpfaq/Schema/">dbSNP Organization and Structure (Schema)</a><div class="small">Created: August 8, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Schema" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Locating_Schema"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Locating_Schema/">Locating Schema Tables that Contain Specific SNP Data</a><div class="small">Created: August 8, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Schm_Locating_Schema" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Locating_Schema_Double_Hit_Data_Tab"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Locating_Schema/#Schm_Locating_Schema.Double_Hit_Data_Tab">Double Hit Data Table</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Locating_Schema_Functional_synonymo"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Locating_Schema/#Schm_Locating_Schema.Functional_synonymo">Functional (synonymous, non-synonymous, etc.)Data Table</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Locating_Schema_Genotype_Data_Table"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Locating_Schema/#Schm_Locating_Schema.Genotype_Data_Table">Genotype Data Tables</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Locating_Schema_Mapping_Data_Tables"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Locating_Schema/#Schm_Locating_Schema.Mapping_Data_Tables">Mapping Data Tables</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Locating_Schema_MergedExpired_RefSN"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Locating_Schema/#Schm_Locating_Schema.MergedExpired_RefSN">Merged/Expired RefSNP (rs) Tables</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Locating_Schema_Population_Diversit"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Locating_Schema/#Schm_Locating_Schema.Population_Diversit">Population Diversity Tables</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Locating_Schema_Split_RefSNP_rs_Tab"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Locating_Schema/#Schm_Locating_Schema.Split_RefSNP_rs_Tab">Split RefSNP (rs) Table</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Locating_Schema_STS_Accession_Data"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Locating_Schema/#Schm_Locating_Schema.STS_Accession_Data">STS Accession Data Table</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Locating_Schema_Submission_Data_Tab"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Locating_Schema/#Schm_Locating_Schema.Submission_Data_Tab">Submission Data Tables</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_SchemaTable_Def"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_SchemaTable_Def/">SchemaTable Definitions/Locations</a><div class="small">Created: August 8, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Schm_SchemaTable_Def" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_SchemaTable_Def_AlleleFreqBySsPop"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_SchemaTable_Def/#Schm_SchemaTable_Def.AlleleFreqBySsPop">AlleleFreqBySsPop</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_SchemaTable_Def_OmimVarLocusIdSNP_t"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_SchemaTable_Def/#Schm_SchemaTable_Def.OmimVarLocusIdSNP_t">OmimVarLocusIdSNP table</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_SchemaTable_Def_Publication_Table"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_SchemaTable_Def/#Schm_SchemaTable_Def.Publication_Table">Publication Table</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_SchemaTable_Def_SNPAlleleFreq"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_SchemaTable_Def/#Schm_SchemaTable_Def.SNPAlleleFreq">SNPAlleleFreq</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_SchemaTable_Def_SNPContigLoc_Table"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_SchemaTable_Def/#Schm_SchemaTable_Def.SNPContigLoc_Table">SNPContigLoc Table</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_SchemaTable_Def_SNPContigLocusId_Ta"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_SchemaTable_Def/#Schm_SchemaTable_Def.SNPContigLocusId_Ta">SNPContigLocusId Table</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_SchemaTable_Def_SNPFunctionCode_Tab"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_SchemaTable_Def/#Schm_SchemaTable_Def.SNPFunctionCode_Tab">SNPFunctionCode Table</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_SchemaTable_Def_SNPSubSNPLink_Table"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_SchemaTable_Def/#Schm_SchemaTable_Def.SNPSubSNPLink_Table">SNPSubSNPLink Table</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_SchemaTable_Def_SubInd_Table"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_SchemaTable_Def/#Schm_SchemaTable_Def.SubInd_Table">SubInd Table</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Field_Definitio"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Field_Definitio/">Field Definitions</a><div class="small">Created: August 8, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Schm_Field_Definitio" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Field_Definitio_SNPAncestralAllele"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Field_Definitio/#Schm_Field_Definitio.SNPAncestralAllele">SNPAncestralAllele table</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Field_Definitio_SNPChrPosOnRef"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Field_Definitio/#Schm_Field_Definitio.SNPChrPosOnRef">SNPChrPosOnRef</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Field_Definitio_SNPContigLocusId_ta"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Field_Definitio/#Schm_Field_Definitio.SNPContigLocusId_ta">SNPContigLocusId table</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Field_Definitio_SubInd_table"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Field_Definitio/#Schm_Field_Definitio.SubInd_table">SubInd table</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Schema_Changes_"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Schema_Changes_/">Schema Changes and Updates</a><div class="small">Created: August 8, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Schm_Schema_Changes_" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Schema_Changes__Table_Updates"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Schema_Changes_/#Schm_Schema_Changes_.Table_Updates">Table Updates</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Schema_Changes__Discrepancies_betwe"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Schema_Changes_/#Schm_Schema_Changes_.Discrepancies_betwe">Discrepancies between Tables</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Schema_Changes__Replaced_or_Retired"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Schema_Changes_/#Schm_Schema_Changes_.Replaced_or_Retired">Replaced or Retired Tables and fields</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_dbSNP_Build_Upd"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_dbSNP_Build_Upd/">dbSNP Build Updates and Schema Changes</a><div class="small">Created: August 8, 2005; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Downloading_Spe"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Downloading_Spe/">Downloading Specific Schema Tables</a><div class="small">Created: August 8, 2005; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_How_does_dbSNP_"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_How_does_dbSNP_/">How does dbSNP draw the Schema Tables</a><div class="small">Created: August 8, 2005; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/">Local Copies of dbSNP</a><div class="small">Created: August 8, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Schm_Local_Copies_of" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of_Direct_Dumps_of_dbS"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/#Schm_Local_Copies_of.Direct_Dumps_of_dbS">Direct Dumps of dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of_Creating_a_Local_Co"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/#Schm_Local_Copies_of.Creating_a_Local_Co">Creating a Local Copy of dbSNP for the Beginner</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of_Creating_a_Local_Co_1"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/#Schm_Local_Copies_of.Creating_a_Local_Co_1">Creating a Local Copy of dbSNP in Various Database Systems</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of_Creating_a_Local_Co_2"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/#Schm_Local_Copies_of.Creating_a_Local_Co_2">Creating a Local Copy on Linux</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of_Creating_a_Local_Co_3"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/#Schm_Local_Copies_of.Creating_a_Local_Co_3">Creating a Local Copy that Contains Specific SNP Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of_Creating_a_Local_Co_4"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/#Schm_Local_Copies_of.Creating_a_Local_Co_4">Creating a Local Copy that has Specific Applications</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of_Keeping_Local_Copie"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/#Schm_Local_Copies_of.Keeping_Local_Copie">Keeping Local Copies Updated</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of_Problems_Downloadin"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/#Schm_Local_Copies_of.Problems_Downloadin">Problems Downloading Data for Local Copies</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of_Using_SQL_to_Extrac"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/#Schm_Local_Copies_of.Using_SQL_to_Extrac">Using SQL to Extract Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of_The_NSE_Tables"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/#Schm_Local_Copies_of.The_NSE_Tables">The NSE Tables</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of_Searching_Local_Cop"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/#Schm_Local_Copies_of.Searching_Local_Cop">Searching Local Copies of dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of_Discrepancies_betwe"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/#Schm_Local_Copies_of.Discrepancies_betwe">Discrepancies between a Local Copy Search and a Web-based Search</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Schm_Local_Copies_of_Discrepancies_betwe_1"><a class="toc-item" href="/books/n/helpsnpfaq/Schm_Local_Copies_of/#Schm_Local_Copies_of.Discrepancies_betwe_1">Discrepancies between the Data Dictionary and FTP Documentation</a></li></ul></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Content"><a class="toc-item" href="/books/n/helpsnpfaq/Content/">dbSNP Data Content Information</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Content" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_Data_Orig"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_Data_Orig/">dbSNP Data Origins</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Cnt_dbSNP_Data_Orig" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_Data_Orig_Data_ExchangeData_Sy"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_Data_Orig/#Cnt_dbSNP_Data_Orig.Data_ExchangeData_Sy">Data Exchange/Data Synchronization with other SNP Databases/Resources</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_QualContrl"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_QualContrl/">dbSNP Data Quality Control</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_Data_Stats"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_Data_Stats/">dbSNP Data Statistics</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Cnt_dbSNP_Data_Stats" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_Data_Stats_Statistics_on_Total"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_Data_Stats/#Cnt_dbSNP_Data_Stats.Statistics_on_Total">Statistics on Total Number of dbSNP Variations</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_Data_Stats_Calculations_of_Mea"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_Data_Stats/#Cnt_dbSNP_Data_Stats.Calculations_of_Mea">Calculations of Mean SNP Density</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_Data_Stats_Total_number_of_Ref"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_Data_Stats/#Cnt_dbSNP_Data_Stats.Total_number_of_Ref">Total number of RefSNPs vs.Total Number of Submitted SNPs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_Data_Stats_Summary_of_Annotate"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_Data_Stats/#Cnt_dbSNP_Data_Stats.Summary_of_Annotate">Summary of Annotated dbSNP Entries</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_Data_Stats_dbSNP_Growth_Rate_S"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_Data_Stats/#Cnt_dbSNP_Data_Stats.dbSNP_Growth_Rate_S">dbSNP Growth Rate Statistics</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_dbSNP_Data_Strg"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_dbSNP_Data_Strg/">dbSNP Data Storage Information</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Classes_Gen_Var"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Classes_Gen_Var/">Classes of Genetic Variation Included in dbSNP</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Size_Genetic_Var"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Size_Genetic_Var/">Size of Genetic Variations Included in dbSNP</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Seq_Notat_SNPs"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Seq_Notat_SNPs/">Sequence Notation for SNPs Housed in dbSNP</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/">Submitted SNPs (ss) and Other Data Submitted to dbSNP</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Cnt_Submitted_SNPs" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs_Submitted_SNPs_ss_Def"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/#Cnt_Submitted_SNPs.Submitted_SNPs_ss_Def">Submitted SNPs (ss) Defined</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs_Submitted_Sequence_Da"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/#Cnt_Submitted_SNPs.Submitted_Sequence_Da">Submitted Sequence Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs_Species_Data_included"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/#Cnt_Submitted_SNPs.Species_Data_included">Species Data included in dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs_Ethnic_Data_in_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/#Cnt_Submitted_SNPs.Ethnic_Data_in_dbSNP">Ethnic Data in dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs_Strain_Data_In_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/#Cnt_Submitted_SNPs.Strain_Data_In_dbSNP">Strain Data In dbSNP</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs_Submitter_Information"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/#Cnt_Submitted_SNPs.Submitter_Information">Submitter Information</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs_Submitter_Documentati"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/#Cnt_Submitted_SNPs.Submitter_Documentati">Submitter Documentation for SNPs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs_HapMap_Data"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/#Cnt_Submitted_SNPs.HapMap_Data">HapMap Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs_Computationally_Deriv"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/#Cnt_Submitted_SNPs.Computationally_Deriv">Computationally Derived SNPs</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs_Published_Mutations_i"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/#Cnt_Submitted_SNPs.Published_Mutations_i">Published Mutations in dbSNP?</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs_Validation_Data"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/#Cnt_Submitted_SNPs.Validation_Data">Validation Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Submitted_SNPs_Population_Diversity"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Submitted_SNPs/#Cnt_Submitted_SNPs.Population_Diversity">Population Diversity Data</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Clustered_RefSNP"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Clustered_RefSNP/">Clustered RefSNPs (rs) and Other Data Computed in House</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Cnt_Clustered_RefSNP" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Clustered_RefSNP_RefSNPs_rs_Defined"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Clustered_RefSNP/#Cnt_Clustered_RefSNP.RefSNPs_rs_Defined">RefSNPs (rs) Defined</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Clustered_RefSNP_RefSNP_rs_Character"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Clustered_RefSNP/#Cnt_Clustered_RefSNP.RefSNP_rs_Character">RefSNP (rs) Characteristics</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Clustered_RefSNP_Hardy_Weinberg_Equi"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Clustered_RefSNP/#Cnt_Clustered_RefSNP.Hardy_Weinberg_Equi">Hardy Weinberg Equilibrium Data</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Clustered_RefSNP_Merging_RefSNP_Numb"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Clustered_RefSNP/#Cnt_Clustered_RefSNP.Merging_RefSNP_Numb">Merging RefSNP Numbers and RefSNP Clusters</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Ancestral_Allele"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Ancestral_Allele/">Ancestral Allele Data</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Cnt_Ancestral_Allele" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Ancestral_Allele_Determining_Ancestr"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Ancestral_Allele/#Cnt_Ancestral_Allele.Determining_Ancestr">Determining Ancestral Alleles</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Ancestral_Allele_Annotating_Ancestra"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Ancestral_Allele/#Cnt_Ancestral_Allele.Annotating_Ancestra">Annotating Ancestral Alleles</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Ancestral_Allele_Interpreting_Ancest"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Ancestral_Allele/#Cnt_Ancestral_Allele.Interpreting_Ancest">Interpreting Ancestral Allele Field in refSNP Report</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Associat_Studies"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Associat_Studies/">Association Studies</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Ascertmnt_Bias"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Ascertmnt_Bias/">Ascertainment Bias</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div><ul id="toc_lst_NBK3848_toc_Cnt_Ascertmnt_Bias" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Ascertmnt_Bias_References"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Ascertmnt_Bias/#Cnt_Ascertmnt_Bias.References">References</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Auto_SNP_Collect"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Auto_SNP_Collect/">Automated SNP Collection (Data Mining)</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Avg_Allele_Frequ"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Avg_Allele_Frequ/">Average Allele Frequency Calculation</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Double_Hit_SNP"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Double_Hit_SNP/">Double Hit SNP Computation</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_HardyWeinberg_Eq"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_HardyWeinberg_Eq/">Hardy Weinberg Equilibrium Data</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Heterozygosity"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Heterozygosity/">Heterozygosity Data</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_Linkage_Disequil"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_Linkage_Disequil/">Linkage Disequilibrium Data</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cnt_References"><a class="toc-item" href="/books/n/helpsnpfaq/Cnt_References/">References</a><div class="small">Created: July 23, 2005; Last Update: February 18, 2014.</div></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Citing"><a class="toc-item" href="/books/n/helpsnpfaq/Citing/">Citing dbSNP</a><div class="small">Created: July 7, 2005; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_Citing" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cit_dbSNP_in_a_Publ"><a class="toc-item" href="/books/n/helpsnpfaq/Cit_dbSNP_in_a_Publ/">Citing dbSNP in a Publication</a><div class="small">Created: July 7, 2005; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cit_dbSNP_CreateDate"><a class="toc-item" href="/books/n/helpsnpfaq/Cit_dbSNP_CreateDate/">dbSNP Creation Date Information</a><div class="small">Created: July 7, 2005; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cit_dbSNP_db_Stats"><a class="toc-item" href="/books/n/helpsnpfaq/Cit_dbSNP_db_Stats/">dbSNP Database Statistics</a><div class="small">Created: July 7, 2005; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cit_dbSNP_srchengine"><a class="toc-item" href="/books/n/helpsnpfaq/Cit_dbSNP_srchengine/">Using dbSNP data in a Locally Created Public Search Engine</a><div class="small">Created: July 7, 2005; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Cit_Images_NCBIsite"><a class="toc-item" href="/books/n/helpsnpfaq/Cit_Images_NCBIsite/">Using Images from NCBI Sites</a><div class="small">Created: July 7, 2005; Last Update: June 15, 2010.</div></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info"><a class="toc-item" href="/books/n/helpsnpfaq/Info/">General Information about dbSNP, Single Nucleotide Polymorphisims, and Genetics</a><ul id="toc_lst_NBK3848_toc_Info" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_GenInfo_dbSNP"><a class="toc-item" href="/books/n/helpsnpfaq/Info_GenInfo_dbSNP/">General Information about dbSNP as a Database Resource</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_Geninfo_SingleN"><a class="toc-item" href="/books/n/helpsnpfaq/Info_Geninfo_SingleN/">General information about Single Nucleotide Polymorphisms</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_Info_Haplotypes"><a class="toc-item" href="/books/n/helpsnpfaq/Info_Info_Haplotypes/">Information about Haplotypes</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_dbSNP_Phenotype"><a class="toc-item" href="/books/n/helpsnpfaq/Info_dbSNP_Phenotype/">dbSNP and Phenotype Records</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_STR_Naming"><a class="toc-item" href="/books/n/helpsnpfaq/Info_STR_Naming/">STR Naming Convention</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_Evolution_Quest"><a class="toc-item" href="/books/n/helpsnpfaq/Info_Evolution_Quest/">Evolution Questions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_Pedigree_Softwr"><a class="toc-item" href="/books/n/helpsnpfaq/Info_Pedigree_Softwr/">Pedigree Software</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_PersnlHaplotype"><a class="toc-item" href="/books/n/helpsnpfaq/Info_PersnlHaplotype/">Personal Haplotype Questions</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_Personal_SNP"><a class="toc-item" href="/books/n/helpsnpfaq/Info_Personal_SNP/">Personal SNP Screenings</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_Info_Human_Gene"><a class="toc-item" href="/books/n/helpsnpfaq/Info_Human_Gene/">Human Gene Nomenclature</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsquick"><a class="toc-item" href="/books/n/helpsnpfaq/vbsquick/">Human Variation Batch Submission Quick Start</a><div class="small">Created: April 9, 2008; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_vbsquick" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Data_Types_Ac"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Data_Types_Ac/">Data Types Accepted in a Variation Batch Submission</a><div class="small">Created: April 9, 2008; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Beginning_the"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Beginning_the/">Beginning the Submission Process</a><div class="small">Created: April 9, 2008; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_vbsqck_Beginning_the" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Beginning_the_CreatingUsing_a_Han"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Beginning_the/#vbsqck_Beginning_the.CreatingUsing_a_Han">Creating/Using a Handle</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Beginning_the_CreatingChanging_yo"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Beginning_the/#vbsqck_Beginning_the.CreatingChanging_yo">Creating/Changing your Password</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Beginning_the_What_Documentation"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Beginning_the/#vbsqck_Beginning_the.What_Documentation">What Documentation do I fill out for a Variation Batch Submission?</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Using_the_Exc"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Using_the_Exc/">Using the Excel Submission Template to create your Batch Submission</a><div class="small">Created: April 9, 2008; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Submitting_Da"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Submitting_Da/">Submitting Data</a><div class="small">Created: April 9, 2008; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Submission_Pr"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Submission_Pr/">Submission Processing</a><div class="small">Created: April 9, 2008; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_vbsqck_Submission_Pr" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Submission_Pr_What_happens_follow"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Submission_Pr/#vbsqck_Submission_Pr.What_happens_follow">What happens following Submission?</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Submission_Pr_Validation_Failure"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Submission_Pr/#vbsqck_Submission_Pr.Validation_Failure">Validation Failure</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Submission_Pr_Load_Failure"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Submission_Pr/#vbsqck_Submission_Pr.Load_Failure">Load Failure</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Variation_ID_"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Variation_ID_/">Variation ID Assignment</a><div class="small">Created: April 9, 2008; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_Hold_Until_Pu"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_Hold_Until_Pu/">Hold Until Published (HUP) Policy</a><div class="small">Created: April 9, 2008; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_How_do_I_Upda"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_How_do_I_Upda/">How do I Update Data I’ve already Submitted?</a><div class="small">Created: April 9, 2008; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_vbsqck_How_do_I_find"><a class="toc-item" href="/books/n/helpsnpfaq/vbsqck_How_do_I_find/">How do I find my variations after submission, but before rs number assignment?</a><div class="small">Created: April 9, 2008; Last Update: June 15, 2010.</div></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTquick"><a class="toc-item" href="/books/n/helpsnpfaq/GSTquick/">Genome Workbench SNP Tools (GST) Quick Start</a><div class="small">Created: April 23, 2008; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_GSTquick" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_GST_Defined"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_GST_Defined/">GST Defined</a><div class="small">Created: April 23, 2008; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_GST_Features"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_GST_Features/">GST Features</a><div class="small">Created: April 23, 2008; Last Update: June 15, 2010.</div></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_Use_GST_frst"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_Use_GST_frst/">Using GST for the First Time</a><div class="small">Created: April 23, 2008; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_GSTqck_Use_GST_frst" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_Use_GST_frst_Downloading_GST"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_Use_GST_frst/#GSTqck_Use_GST_frst.Downloading_GST">Downloading GST</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_Use_GST_frst_Loading_Data_to_GST"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_Use_GST_frst/#GSTqck_Use_GST_frst.Loading_Data_to_GST">Loading Data to GST</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_Use_GST_frst_Finding_Help_using_G"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_Use_GST_frst/#GSTqck_Use_GST_frst.Finding_Help_using_G">Finding Help using GST</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_Use_Spcif_GST"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_Use_Spcif_GST/">Using Specific GST Features</a><div class="small">Created: April 23, 2008; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_GSTqck_Use_Spcif_GST" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_Use_Spcif_GST_The_Graphical_View"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_Use_Spcif_GST/#GSTqck_Use_Spcif_GST.The_Graphical_View">The Graphical View</a></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_Use_Spcif_GST_The_SNP_Table_View"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_Use_Spcif_GST/#GSTqck_Use_Spcif_GST.The_SNP_Table_View">The SNP Table View</a></li></ul></li><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_Use_GST_GWAS"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_Use_GST_GWAS/">Using GST to Study Genome Wide Association (GWAS) Data</a><div class="small">Created: April 23, 2008; Last Update: June 15, 2010.</div><ul id="toc_lst_NBK3848_toc_GSTqck_Use_GST_GWAS" class="simple-list toc bktoc_lst_exp"><li class="half_rhythm" id="toc_itm_NBK3848_toc_GSTqck_Use_GST_GWAS_Loading_GWAS_Data_to"><a class="toc-item" href="/books/n/helpsnpfaq/GSTqck_Use_GST_GWAS/#GSTqck_Use_GST_GWAS.Loading_GWAS_Data_to">Loading GWAS Data to GST</a></li></ul></li></ul></li></ul><div class="bktoc_all_cntnr align_right" style="display:none"><ul class="inline_list_right"><li><a class="bktoc_all_exp" href="#">Expand All</a></li><li style="margin-left:.8em"><a class="bktoc_all_clps" href="#">Collapse All</a></li></ul></div></div></div></div>
|
|
<div class="post-content"><div><div class="half_rhythm"><a href="/books/about/copyright/">Copyright Notice</a></div><div class="small"><span class="label">Bookshelf ID: NBK3848</span></div><div style="margin-top:2em" class="bk_noprnt"><div class="pagination bk_noprnt"><span class="inactive page_link prev">< Prev</span><a class="active page_link next" href="/books/n/helpsnpfaq/QuickStart/" title="Next page in this title">Next ></a></div></div></div></div>
|
|
|
|
</div>
|
|
|
|
<!-- Custom content below content -->
|
|
<div class="col4">
|
|
|
|
</div>
|
|
|
|
|
|
<!-- Book content -->
|
|
|
|
<!-- Custom contetnt below bottom nav -->
|
|
<div class="col5">
|
|
|
|
</div>
|
|
</div>
|
|
|
|
<div id="rightcolumn" class="four_col col last">
|
|
<!-- Custom content above discovery portlets -->
|
|
<div class="col6">
|
|
<div id="ncbi_share_book"><a href="#" class="ncbi_share" data-ncbi_share_config="popup:false,shorten:true" ref="id=NBK3848&db=books">Share</a></div>
|
|
|
|
</div>
|
|
<div xmlns:np="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"></div><div class="portlet"><div class="portlet_head"><div class="portlet_title"><h3><span>Views</span></h3></div><a name="Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="PDF_download" id="Shutter"></a></div><div class="portlet_content"><ul xmlns:np="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" class="simple-list"><li><a href="/books/NBK3848/?report=reader">PubReader</a></li><li><a href="/books/NBK3848/?report=printable">Print View</a></li><li><a data-jig="ncbidialog" href="#_ncbi_dlg_citbx_NBK3848" data-jigconfig="width:400,modal:true">Cite this Page</a><div id="_ncbi_dlg_citbx_NBK3848" style="display:none" title="Cite this Page"><div class="bk_tt">SNP FAQ Archive [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2005-. <span class="bk_cite_avail"></span></div></div></li><li><a href="/books/n/helpsnpfaq/pdf/">PDF version of this title</a> (17K)</li></ul></div></div><div class="portlet"><div class="portlet_head"><div class="portlet_title"><h3><span>Other titles in this collection</span></h3></div><a name="Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="source-links" id="Shutter"></a></div><div class="portlet_content"><ul xmlns:np="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" class="simple-list"><li><a href="/books/n/helpcollect/">NCBI Help Manual</a></li></ul></div></div><div class="portlet"><div class="portlet_head"><div class="portlet_title"><h3><span>Recent Activity</span></h3></div><a name="Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="recent_activity" id="Shutter"></a></div><div class="portlet_content"><div xmlns:np="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" id="HTDisplay" class=""><div class="action"><a href="javascript:historyDisplayState('ClearHT')">Clear</a><a href="javascript:historyDisplayState('HTOff')" class="HTOn">Turn Off</a><a href="javascript:historyDisplayState('HTOn')" class="HTOff">Turn On</a></div><ul id="activity"><li class="ra_rcd ralinkpopper two_line"><a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=1" href="/portal/utils/pageresolver.fcgi?recordid=67c806e2d5edb449bf415fb6">SNP FAQ Archive</a><div class="ralinkpop offscreen_noflow">SNP FAQ Archive<div class="brieflinkpopdesc"></div></div><div class="tertiary"></div></li><li class="ra_rcd ralinkpopper two_line"><a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=2" href="/portal/utils/pageresolver.fcgi?recordid=67c806e1feee5b00acfdbd99">RefSeq Help</a><div class="ralinkpop offscreen_noflow">RefSeq Help<div class="brieflinkpopdesc"></div></div><div class="tertiary"></div></li><li class="ra_rcd ralinkpopper two_line"><a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=3" href="/portal/utils/pageresolver.fcgi?recordid=67c806e0feee5b00acfdb313">PubMed Help</a><div class="ralinkpop offscreen_noflow">PubMed Help<div class="brieflinkpopdesc"></div></div><div class="tertiary"></div></li><li class="ra_rcd ralinkpopper two_line"><a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=4" href="/portal/utils/pageresolver.fcgi?recordid=67c806df6d1ec11b6f5d655a">NLM LitArch (NLM Literature Archive)</a><div class="ralinkpop offscreen_noflow">NLM LitArch (NLM Literature Archive)<div class="brieflinkpopdesc"></div></div><div class="tertiary"></div></li><li class="ra_rcd ralinkpopper two_line"><a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=5" href="/portal/utils/pageresolver.fcgi?recordid=67c806ddb70fbb1960032c07">NLM Catalog Help</a><div class="ralinkpop offscreen_noflow">NLM Catalog Help<div class="brieflinkpopdesc"></div></div><div class="tertiary"></div></li></ul><p class="HTOn">Your browsing activity is empty.</p><p class="HTOff">Activity recording is turned off.</p><p id="turnOn" class="HTOff"><a href="javascript:historyDisplayState('HTOn')">Turn recording back on</a></p><a class="seemore" href="/sites/myncbi/recentactivity">See more...</a></div></div></div>
|
|
|
|
<!-- Custom content below discovery portlets -->
|
|
<div class="col7">
|
|
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<!-- Custom content after all -->
|
|
<div class="col8">
|
|
|
|
</div>
|
|
<div class="col9">
|
|
|
|
</div>
|
|
|
|
<script type="text/javascript" src="/corehtml/pmc/js/jquery.scrollTo-1.4.2.js"></script>
|
|
<script type="text/javascript">
|
|
(function($){
|
|
$('.skiplink').each(function(i, item){
|
|
var href = $($(item).attr('href'));
|
|
href.attr('tabindex', '-1').addClass('skiptarget'); // ensure the target can receive focus
|
|
$(item).on('click', function(event){
|
|
event.preventDefault();
|
|
$.scrollTo(href, 0, {
|
|
onAfter: function(){
|
|
href.focus();
|
|
}
|
|
});
|
|
});
|
|
});
|
|
})(jQuery);
|
|
</script>
|
|
</div>
|
|
<div class="bottom">
|
|
|
|
<div id="NCBIFooter_dynamic">
|
|
<!--<component id="Breadcrumbs" label="breadcrumbs"/>
|
|
<component id="Breadcrumbs" label="helpdesk"/>-->
|
|
|
|
</div>
|
|
|
|
<div class="footer" id="footer">
|
|
<section class="icon-section">
|
|
<div id="icon-section-header" class="icon-section_header">Follow NCBI</div>
|
|
<div class="grid-container container">
|
|
<div class="icon-section_container">
|
|
<a class="footer-icon" id="footer_twitter" href="https://twitter.com/ncbi" aria-label="Twitter"><svg xmlns="http://www.w3.org/2000/svg" data-name="Layer 1" viewBox="0 0 300 300">
|
|
<defs>
|
|
<style>
|
|
.cls-11 {
|
|
fill: #737373;
|
|
}
|
|
</style>
|
|
</defs>
|
|
<title>Twitter</title>
|
|
<path class="cls-11" d="M250.11,105.48c-7,3.14-13,3.25-19.27.14,8.12-4.86,8.49-8.27,11.43-17.46a78.8,78.8,0,0,1-25,9.55,39.35,39.35,0,0,0-67,35.85,111.6,111.6,0,0,1-81-41.08A39.37,39.37,0,0,0,81.47,145a39.08,39.08,0,0,1-17.8-4.92c0,.17,0,.33,0,.5a39.32,39.32,0,0,0,31.53,38.54,39.26,39.26,0,0,1-17.75.68,39.37,39.37,0,0,0,36.72,27.3A79.07,79.07,0,0,1,56,223.34,111.31,111.31,0,0,0,116.22,241c72.3,0,111.83-59.9,111.83-111.84,0-1.71,0-3.4-.1-5.09C235.62,118.54,244.84,113.37,250.11,105.48Z">
|
|
</path>
|
|
</svg></a>
|
|
<a class="footer-icon" id="footer_facebook" href="https://www.facebook.com/ncbi.nlm" aria-label="Facebook"><svg xmlns="http://www.w3.org/2000/svg" data-name="Layer 1" viewBox="0 0 300 300">
|
|
<title>Facebook</title>
|
|
<path class="cls-11" d="M210.5,115.12H171.74V97.82c0-8.14,5.39-10,9.19-10h27.14V52l-39.32-.12c-35.66,0-42.42,26.68-42.42,43.77v19.48H99.09v36.32h27.24v109h45.41v-109h35Z">
|
|
</path>
|
|
</svg></a>
|
|
<a class="footer-icon" id="footer_linkedin" href="https://www.linkedin.com/company/ncbinlm" aria-label="LinkedIn"><svg xmlns="http://www.w3.org/2000/svg" data-name="Layer 1" viewBox="0 0 300 300">
|
|
<title>LinkedIn</title>
|
|
<path class="cls-11" d="M101.64,243.37H57.79v-114h43.85Zm-22-131.54h-.26c-13.25,0-21.82-10.36-21.82-21.76,0-11.65,8.84-21.15,22.33-21.15S101.7,78.72,102,90.38C102,101.77,93.4,111.83,79.63,111.83Zm100.93,52.61A17.54,17.54,0,0,0,163,182v61.39H119.18s.51-105.23,0-114H163v13a54.33,54.33,0,0,1,34.54-12.66c26,0,44.39,18.8,44.39,55.29v58.35H198.1V182A17.54,17.54,0,0,0,180.56,164.44Z">
|
|
</path>
|
|
</svg></a>
|
|
<a class="footer-icon" id="footer_github" href="https://github.com/ncbi" aria-label="GitHub"><svg xmlns="http://www.w3.org/2000/svg" data-name="Layer 1" viewBox="0 0 300 300">
|
|
<defs>
|
|
<style>
|
|
.cls-11,
|
|
.cls-12 {
|
|
fill: #737373;
|
|
}
|
|
|
|
.cls-11 {
|
|
fill-rule: evenodd;
|
|
}
|
|
</style>
|
|
</defs>
|
|
<title>GitHub</title>
|
|
<path class="cls-11" d="M151.36,47.28a105.76,105.76,0,0,0-33.43,206.1c5.28,1,7.22-2.3,7.22-5.09,0-2.52-.09-10.85-.14-19.69-29.42,6.4-35.63-12.48-35.63-12.48-4.81-12.22-11.74-15.47-11.74-15.47-9.59-6.56.73-6.43.73-6.43,10.61.75,16.21,10.9,16.21,10.9,9.43,16.17,24.73,11.49,30.77,8.79,1-6.83,3.69-11.5,6.71-14.14C108.57,197.1,83.88,188,83.88,147.51a40.92,40.92,0,0,1,10.9-28.39c-1.1-2.66-4.72-13.42,1-28,0,0,8.88-2.84,29.09,10.84a100.26,100.26,0,0,1,53,0C198,88.3,206.9,91.14,206.9,91.14c5.76,14.56,2.14,25.32,1,28a40.87,40.87,0,0,1,10.89,28.39c0,40.62-24.74,49.56-48.29,52.18,3.79,3.28,7.17,9.71,7.17,19.58,0,14.15-.12,25.54-.12,29,0,2.82,1.9,6.11,7.26,5.07A105.76,105.76,0,0,0,151.36,47.28Z">
|
|
</path>
|
|
<path class="cls-12" d="M85.66,199.12c-.23.52-1.06.68-1.81.32s-1.2-1.06-.95-1.59,1.06-.69,1.82-.33,1.21,1.07.94,1.6Zm-1.3-1">
|
|
</path>
|
|
<path class="cls-12" d="M90,203.89c-.51.47-1.49.25-2.16-.49a1.61,1.61,0,0,1-.31-2.19c.52-.47,1.47-.25,2.17.49s.82,1.72.3,2.19Zm-1-1.08">
|
|
</path>
|
|
<path class="cls-12" d="M94.12,210c-.65.46-1.71,0-2.37-.91s-.64-2.07,0-2.52,1.7,0,2.36.89.65,2.08,0,2.54Zm0,0"></path>
|
|
<path class="cls-12" d="M99.83,215.87c-.58.64-1.82.47-2.72-.41s-1.18-2.06-.6-2.7,1.83-.46,2.74.41,1.2,2.07.58,2.7Zm0,0">
|
|
</path>
|
|
<path class="cls-12" d="M107.71,219.29c-.26.82-1.45,1.2-2.64.85s-2-1.34-1.74-2.17,1.44-1.23,2.65-.85,2,1.32,1.73,2.17Zm0,0">
|
|
</path>
|
|
<path class="cls-12" d="M116.36,219.92c0,.87-1,1.59-2.24,1.61s-2.29-.68-2.3-1.54,1-1.59,2.26-1.61,2.28.67,2.28,1.54Zm0,0">
|
|
</path>
|
|
<path class="cls-12" d="M124.42,218.55c.15.85-.73,1.72-2,1.95s-2.37-.3-2.52-1.14.73-1.75,2-2,2.37.29,2.53,1.16Zm0,0"></path>
|
|
</svg></a>
|
|
<a class="footer-icon" id="footer_blog" href="https://ncbiinsights.ncbi.nlm.nih.gov/" aria-label="Blog">
|
|
<svg xmlns="http://www.w3.org/2000/svg" id="Layer_1" data-name="Layer 1" viewBox="0 0 40 40">
|
|
<defs><style>.cls-1{fill:#737373;}</style></defs>
|
|
<title>NCBI Insights Blog</title>
|
|
<path class="cls-1" d="M14,30a4,4,0,1,1-4-4,4,4,0,0,1,4,4Zm11,3A19,19,0,0,0,7.05,15a1,1,0,0,0-1,1v3a1,1,0,0,0,.93,1A14,14,0,0,1,20,33.07,1,1,0,0,0,21,34h3a1,1,0,0,0,1-1Zm9,0A28,28,0,0,0,7,6,1,1,0,0,0,6,7v3a1,1,0,0,0,1,1A23,23,0,0,1,29,33a1,1,0,0,0,1,1h3A1,1,0,0,0,34,33Z"></path>
|
|
</svg>
|
|
</a>
|
|
</div>
|
|
</div>
|
|
</section>
|
|
|
|
<section class="container-fluid bg-primary">
|
|
<div class="container pt-5">
|
|
<div class="row mt-3">
|
|
<div class="col-lg-3 col-12">
|
|
<p><a class="text-white" href="https://www.nlm.nih.gov/socialmedia/index.html">Connect with NLM</a></p>
|
|
<ul class="list-inline social_media">
|
|
<li class="list-inline-item"><a href="https://twitter.com/NLM_NIH" aria-label="Twitter" target="_blank" rel="noopener noreferrer"><svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" x="0px" y="0px" viewBox="0 0 249 249" style="enable-background:new 0 0 249 249;" xml:space="preserve">
|
|
<style type="text/css">
|
|
.st20 {
|
|
fill: #FFFFFF;
|
|
}
|
|
|
|
.st30 {
|
|
fill: none;
|
|
stroke: #FFFFFF;
|
|
stroke-width: 8;
|
|
stroke-miterlimit: 10;
|
|
}
|
|
</style>
|
|
<title>Twitter</title>
|
|
<g>
|
|
<g>
|
|
<g>
|
|
<path class="st20" d="M192.9,88.1c-5,2.2-9.2,2.3-13.6,0.1c5.7-3.4,6-5.8,8.1-12.3c-5.4,3.2-11.4,5.5-17.6,6.7 c-10.5-11.2-28.1-11.7-39.2-1.2c-7.2,6.8-10.2,16.9-8,26.5c-22.3-1.1-43.1-11.7-57.2-29C58,91.6,61.8,107.9,74,116 c-4.4-0.1-8.7-1.3-12.6-3.4c0,0.1,0,0.2,0,0.4c0,13.2,9.3,24.6,22.3,27.2c-4.1,1.1-8.4,1.3-12.5,0.5c3.6,11.3,14,19,25.9,19.3 c-11.6,9.1-26.4,13.2-41.1,11.5c12.7,8.1,27.4,12.5,42.5,12.5c51,0,78.9-42.2,78.9-78.9c0-1.2,0-2.4-0.1-3.6 C182.7,97.4,189.2,93.7,192.9,88.1z"></path>
|
|
</g>
|
|
</g>
|
|
<circle class="st30" cx="124.4" cy="128.8" r="108.2"></circle>
|
|
</g>
|
|
</svg></a></li>
|
|
<li class="list-inline-item"><a href="https://www.facebook.com/nationallibraryofmedicine" aria-label="Facebook" rel="noopener noreferrer" target="_blank">
|
|
<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" x="0px" y="0px" viewBox="0 0 249 249" style="enable-background:new 0 0 249 249;" xml:space="preserve">
|
|
<style type="text/css">
|
|
.st10 {
|
|
fill: #FFFFFF;
|
|
}
|
|
|
|
.st110 {
|
|
fill: none;
|
|
stroke: #FFFFFF;
|
|
stroke-width: 8;
|
|
stroke-miterlimit: 10;
|
|
}
|
|
</style>
|
|
<title>Facebook</title>
|
|
<g>
|
|
<g>
|
|
<path class="st10" d="M159,99.1h-24V88.4c0-5,3.3-6.2,5.7-6.2h16.8V60l-24.4-0.1c-22.1,0-26.2,16.5-26.2,27.1v12.1H90v22.5h16.9 v67.5H135v-67.5h21.7L159,99.1z"></path>
|
|
</g>
|
|
</g>
|
|
<circle class="st110" cx="123.6" cy="123.2" r="108.2"></circle>
|
|
</svg>
|
|
</a></li>
|
|
<li class="list-inline-item"><a href="https://www.youtube.com/user/NLMNIH" aria-label="Youtube" target="_blank" rel="noopener noreferrer"><svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" x="0px" y="0px" viewBox="0 0 249 249" style="enable-background:new 0 0 249 249;" xml:space="preserve">
|
|
<title>Youtube</title>
|
|
<style type="text/css">
|
|
.st4 {
|
|
fill: none;
|
|
stroke: #FFFFFF;
|
|
stroke-width: 8;
|
|
stroke-miterlimit: 10;
|
|
}
|
|
|
|
.st5 {
|
|
fill: #FFFFFF;
|
|
}
|
|
</style>
|
|
<circle class="st4" cx="124.2" cy="123.4" r="108.2"></circle>
|
|
<g transform="translate(0,-952.36218)">
|
|
<path class="st5" d="M88.4,1037.4c-10.4,0-18.7,8.3-18.7,18.7v40.1c0,10.4,8.3,18.7,18.7,18.7h72.1c10.4,0,18.7-8.3,18.7-18.7 v-40.1c0-10.4-8.3-18.7-18.7-18.7H88.4z M115.2,1058.8l29.4,17.4l-29.4,17.4V1058.8z"></path>
|
|
</g>
|
|
</svg></a></li>
|
|
</ul>
|
|
</div>
|
|
<div class="col-lg-3 col-12">
|
|
<p class="address_footer text-white">National Library of Medicine<br />
|
|
<a href="https://www.google.com/maps/place/8600+Rockville+Pike,+Bethesda,+MD+20894/@38.9959508,-77.101021,17z/data=!3m1!4b1!4m5!3m4!1s0x89b7c95e25765ddb:0x19156f88b27635b8!8m2!3d38.9959508!4d-77.0988323" class="text-white" target="_blank" rel="noopener noreferrer">8600 Rockville Pike<br />
|
|
Bethesda, MD 20894</a></p>
|
|
</div>
|
|
<div class="col-lg-3 col-12 centered-lg">
|
|
<p><a href="https://www.nlm.nih.gov/web_policies.html" class="text-white">Web Policies</a><br />
|
|
<a href="https://www.nih.gov/institutes-nih/nih-office-director/office-communications-public-liaison/freedom-information-act-office" class="text-white">FOIA</a><br />
|
|
<a href="https://www.hhs.gov/vulnerability-disclosure-policy/index.html" class="text-white" id="vdp">HHS Vulnerability Disclosure</a></p>
|
|
</div>
|
|
<div class="col-lg-3 col-12 centered-lg">
|
|
<p><a class="supportLink text-white" href="https://support.nlm.nih.gov/">Help</a><br />
|
|
<a href="https://www.nlm.nih.gov/accessibility.html" class="text-white">Accessibility</a><br />
|
|
<a href="https://www.nlm.nih.gov/careers/careers.html" class="text-white">Careers</a></p>
|
|
</div>
|
|
</div>
|
|
<div class="row">
|
|
<div class="col-lg-12 centered-lg">
|
|
<nav class="bottom-links">
|
|
<ul class="mt-3">
|
|
<li>
|
|
<a class="text-white" href="//www.nlm.nih.gov/">NLM</a>
|
|
</li>
|
|
<li>
|
|
<a class="text-white" href="https://www.nih.gov/">NIH</a>
|
|
</li>
|
|
<li>
|
|
<a class="text-white" href="https://www.hhs.gov/">HHS</a>
|
|
</li>
|
|
<li>
|
|
<a class="text-white" href="https://www.usa.gov/">USA.gov</a>
|
|
</li>
|
|
</ul>
|
|
</nav>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
</section>
|
|
<script type="text/javascript" src="/portal/portal3rc.fcgi/rlib/js/InstrumentOmnitureBaseJS/InstrumentNCBIConfigJS/InstrumentNCBIBaseJS/InstrumentPageStarterJS.js?v=1"> </script>
|
|
<script type="text/javascript" src="/portal/portal3rc.fcgi/static/js/hfjs2.js"> </script>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
<!--/.page-->
|
|
</div>
|
|
<!--/.wrap-->
|
|
</div><!-- /.twelve_col -->
|
|
</div>
|
|
<!-- /.grid -->
|
|
|
|
<span class="PAFAppResources"></span>
|
|
|
|
<!-- BESelector tab -->
|
|
|
|
|
|
|
|
<noscript><img alt="statistics" src="/stat?jsdisabled=true&ncbi_db=books&ncbi_pdid=book-toc&ncbi_acc=NBK3848&ncbi_domain=helpsnpfaq&ncbi_report=record&ncbi_type=fulltext&ncbi_objectid=&ncbi_pcid=/NBK3848/&ncbi_pagename=SNP FAQ Archive - NCBI Bookshelf&ncbi_bookparttype=toc&ncbi_app=bookshelf" /></noscript>
|
|
|
|
|
|
<!-- usually for JS scripts at page bottom -->
|
|
<!--<component id="PageFixtures" label="styles"></component>-->
|
|
|
|
|
|
<!-- CE8B5AF87C7FFCB1_0191SID /projects/books/PBooks@9.11 portal106 v4.1.r689238 Tue, Oct 22 2024 16:10:51 -->
|
|
<span id="portal-csrf-token" style="display:none" data-token="CE8B5AF87C7FFCB1_0191SID"></span>
|
|
|
|
<script type="text/javascript" src="//static.pubmed.gov/portal/portal3rc.fcgi/4216699/js/3879255/4121861/3501987/4008961/3893018/3821238/4062932/4209313/4212053/4076480/3921943/3400083/3426610.js" snapshot="books"></script></body>
|
|
</html> |