497 lines
No EOL
70 KiB
HTML
497 lines
No EOL
70 KiB
HTML
<?xml version="1.0" encoding="utf-8"?>
|
||
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
||
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
|
||
|
||
<head><meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||
<!-- AppResources meta begin -->
|
||
<meta name="paf-app-resources" content="" />
|
||
<script type="text/javascript">var ncbi_startTime = new Date();</script>
|
||
|
||
<!-- AppResources meta end -->
|
||
|
||
<!-- TemplateResources meta begin -->
|
||
<meta name="paf_template" content="" />
|
||
|
||
<!-- TemplateResources meta end -->
|
||
|
||
<!-- Logger begin -->
|
||
<meta name="ncbi_db" content="books" /><meta name="ncbi_pdid" content="book-part" /><meta name="ncbi_acc" content="NBK573494" /><meta name="ncbi_domain" content="helpsnpfaq" /><meta name="ncbi_report" content="record" /><meta name="ncbi_type" content="fulltext" /><meta name="ncbi_objectid" content="" /><meta name="ncbi_pcid" content="/NBK573494/" /><meta name="ncbi_pagename" content="Locating Schema Tables that Contain Specific SNP Data - SNP FAQ Archive - NCBI Bookshelf" /><meta name="ncbi_bookparttype" content="chapter" /><meta name="ncbi_app" content="bookshelf" />
|
||
<!-- Logger end -->
|
||
|
||
<title>Locating Schema Tables that Contain Specific SNP Data - SNP FAQ Archive - NCBI Bookshelf</title>
|
||
|
||
<!-- AppResources external_resources begin -->
|
||
<link rel="stylesheet" href="/core/jig/1.15.2/css/jig.min.css" /><script type="text/javascript" src="/core/jig/1.15.2/js/jig.min.js"></script>
|
||
|
||
<!-- AppResources external_resources end -->
|
||
|
||
<!-- Page meta begin -->
|
||
<meta name="robots" content="NOINDEX,NOFOLLOW,NOARCHIVE,NOIMAGEINDEX" /><meta name="citation_inbook_title" content="SNP FAQ Archive [Internet]" /><meta name="citation_title" content="Locating Schema Tables that Contain Specific SNP Data" /><meta name="citation_publisher" content="National Center for Biotechnology Information (US)" /><meta name="citation_date" content="2010/06/15" /><meta name="citation_fulltext_html_url" content="https://www.ncbi.nlm.nih.gov/books/NBK573494/" /><link rel="schema.DC" href="http://purl.org/DC/elements/1.0/" /><meta name="DC.Title" content="Locating Schema Tables that Contain Specific SNP Data" /><meta name="DC.Type" content="Text" /><meta name="DC.Publisher" content="National Center for Biotechnology Information (US)" /><meta name="DC.Date" content="2010/06/15" /><meta name="DC.Identifier" content="https://www.ncbi.nlm.nih.gov/books/NBK573494/" /><meta name="description" content="SubSNPAcc.acc_ver is null in this case, because most dbSTS accessions do not have a version number" /><meta name="og:title" content="Locating Schema Tables that Contain Specific SNP Data" /><meta name="og:type" content="book" /><meta name="og:description" content="SubSNPAcc.acc_ver is null in this case, because most dbSTS accessions do not have a version number" /><meta name="og:url" content="https://www.ncbi.nlm.nih.gov/books/NBK573494/" /><meta name="og:site_name" content="NCBI Bookshelf" /><meta name="og:image" content="https://www.ncbi.nlm.nih.gov/corehtml/pmc/pmcgifs/bookshelf/thumbs/th-helpsnpfaq-lrg.png" /><meta name="twitter:card" content="summary" /><meta name="twitter:site" content="@ncbibooks" /><meta name="warning" content="This publication is provided for historical reference only and the information may be out of date." /><meta name="bk-non-canon-loc" content="/books/n/helpsnpfaq/Schm_Locating_Schema/" /><link rel="canonical" href="https://www.ncbi.nlm.nih.gov/books/NBK573494/" /><link rel="stylesheet" href="/corehtml/pmc/css/figpopup.css" type="text/css" media="screen" /><link rel="stylesheet" href="/corehtml/pmc/css/bookshelf/2.26/css/books.min.css" type="text/css" /><link rel="stylesheet" href="/corehtml/pmc/css/bookshelf/2.26/css/books_print.min.css" type="text/css" media="print" /><style type="text/css">.main-content {background:transparent repeat-y top left;background-image:url(/corehtml/pmc/css/bookshelf/2.26/img/archive.png);background-size: auto, contain; padding:0 0 0 3em }</style><style type="text/css">p a.figpopup{display:inline !important} .bk_tt {font-family: monospace} .first-line-outdent .bk_ref {display: inline} .body-content h2, .body-content .h2 {border-bottom: 1px solid #97B0C8} .body-content h2.inline {border-bottom: none} a.page-toc-label , .jig-ncbismoothscroll a {text-decoration:none;border:0 !important} .temp-labeled-list .graphic {display:inline-block !important} .temp-labeled-list img{width:100%}</style><script type="text/javascript" src="/corehtml/pmc/js/jquery.hoverIntent.min.js"> </script><script type="text/javascript" src="/corehtml/pmc/js/common.min.js?_=3.18"> </script><script type="text/javascript" src="/corehtml/pmc/js/large-obj-scrollbars.min.js"> </script><script type="text/javascript">window.name="mainwindow";</script><script type="text/javascript" src="/corehtml/pmc/js/bookshelf/2.26/book-toc.min.js"> </script><script type="text/javascript" src="/corehtml/pmc/js/bookshelf/2.26/books.min.js"> </script><meta name="book-collection" content="helpcollect" />
|
||
|
||
<!-- Page meta end -->
|
||
<link rel="shortcut icon" href="//www.ncbi.nlm.nih.gov/favicon.ico" /><meta name="ncbi_phid" content="CE8E4F717C8BD9710000000000D400A7.m_13" />
|
||
<meta name='referrer' content='origin-when-cross-origin'/><link type="text/css" rel="stylesheet" href="//static.pubmed.gov/portal/portal3rc.fcgi/4216699/css/3852956/3985586/3808861/4121862/3974050/3917732/251717/4216701/14534/45193/4113719/3849091/3984811/3751656/4033350/3840896/3577051/3852958/4008682/4207974/4206132/4062871/12930/3964959/3854974/36029/4128070/9685/3549676/3609192/3609193/3609213/3395586.css" /><link type="text/css" rel="stylesheet" href="//static.pubmed.gov/portal/portal3rc.fcgi/4216699/css/3411343/3882866.css" media="print" /></head>
|
||
<body class="book-part">
|
||
<div class="grid">
|
||
<div class="col twelve_col nomargin shadow">
|
||
<!-- System messages like service outage or JS required; this is handled by the TemplateResources portlet -->
|
||
<div class="sysmessages">
|
||
<noscript>
|
||
<p class="nojs">
|
||
<strong>Warning:</strong>
|
||
The NCBI web site requires JavaScript to function.
|
||
<a href="/guide/browsers/#enablejs" title="Learn how to enable JavaScript" target="_blank">more...</a>
|
||
</p>
|
||
</noscript>
|
||
</div>
|
||
<!--/.sysmessage-->
|
||
<div class="wrap">
|
||
<div class="page">
|
||
<div class="top">
|
||
<div id="universal_header">
|
||
<section class="usa-banner">
|
||
<div class="usa-accordion">
|
||
<header class="usa-banner-header">
|
||
<div class="usa-grid usa-banner-inner">
|
||
<img src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/favicons/favicon-57.png" alt="U.S. flag" />
|
||
<p>An official website of the United States government</p>
|
||
<button class="non-usa-accordion-button usa-banner-button" aria-expanded="false" aria-controls="gov-banner-top" type="button">
|
||
<span class="usa-banner-button-text">Here's how you know</span>
|
||
</button>
|
||
</div>
|
||
</header>
|
||
<div class="usa-banner-content usa-grid usa-accordion-content" id="gov-banner-top" aria-hidden="true">
|
||
<div class="usa-banner-guidance-gov usa-width-one-half">
|
||
<img class="usa-banner-icon usa-media_block-img" src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/icon-dot-gov.svg" alt="Dot gov" />
|
||
<div class="usa-media_block-body">
|
||
<p>
|
||
<strong>The .gov means it's official.</strong>
|
||
<br />
|
||
Federal government websites often end in .gov or .mil. Before
|
||
sharing sensitive information, make sure you're on a federal
|
||
government site.
|
||
</p>
|
||
</div>
|
||
</div>
|
||
<div class="usa-banner-guidance-ssl usa-width-one-half">
|
||
<img class="usa-banner-icon usa-media_block-img" src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/icon-https.svg" alt="Https" />
|
||
<div class="usa-media_block-body">
|
||
<p>
|
||
<strong>The site is secure.</strong>
|
||
<br />
|
||
The <strong>https://</strong> ensures that you are connecting to the
|
||
official website and that any information you provide is encrypted
|
||
and transmitted securely.
|
||
</p>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</section>
|
||
<div class="usa-overlay"></div>
|
||
<header class="ncbi-header" role="banner" data-section="Header">
|
||
|
||
<div class="usa-grid">
|
||
<div class="usa-width-one-whole">
|
||
|
||
<div class="ncbi-header__logo">
|
||
<a href="/" class="logo" aria-label="NCBI Logo" data-ga-action="click_image" data-ga-label="NIH NLM Logo">
|
||
<img src="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/logos/AgencyLogo.svg" alt="NIH NLM Logo" />
|
||
</a>
|
||
</div>
|
||
|
||
<div class="ncbi-header__account">
|
||
<a id="account_login" href="https://account.ncbi.nlm.nih.gov" class="usa-button header-button" style="display:none" data-ga-action="open_menu" data-ga-label="account_menu">Log in</a>
|
||
<button id="account_info" class="header-button" style="display:none" aria-controls="account_popup" type="button">
|
||
<span class="fa fa-user" aria-hidden="true">
|
||
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" width="20px" height="20px">
|
||
<g style="fill: #fff">
|
||
<ellipse cx="12" cy="8" rx="5" ry="6"></ellipse>
|
||
<path d="M21.8,19.1c-0.9-1.8-2.6-3.3-4.8-4.2c-0.6-0.2-1.3-0.2-1.8,0.1c-1,0.6-2,0.9-3.2,0.9s-2.2-0.3-3.2-0.9 C8.3,14.8,7.6,14.7,7,15c-2.2,0.9-3.9,2.4-4.8,4.2C1.5,20.5,2.6,22,4.1,22h15.8C21.4,22,22.5,20.5,21.8,19.1z"></path>
|
||
</g>
|
||
</svg>
|
||
</span>
|
||
<span class="username desktop-only" aria-hidden="true" id="uname_short"></span>
|
||
<span class="sr-only">Show account info</span>
|
||
</button>
|
||
</div>
|
||
|
||
<div class="ncbi-popup-anchor">
|
||
<div class="ncbi-popup account-popup" id="account_popup" aria-hidden="true">
|
||
<div class="ncbi-popup-head">
|
||
<button class="ncbi-close-button" data-ga-action="close_menu" data-ga-label="account_menu" type="button">
|
||
<span class="fa fa-times">
|
||
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 48 48" width="24px" height="24px">
|
||
<path d="M38 12.83l-2.83-2.83-11.17 11.17-11.17-11.17-2.83 2.83 11.17 11.17-11.17 11.17 2.83 2.83 11.17-11.17 11.17 11.17 2.83-2.83-11.17-11.17z"></path>
|
||
</svg>
|
||
</span>
|
||
<span class="usa-sr-only">Close</span></button>
|
||
<h4>Account</h4>
|
||
</div>
|
||
<div class="account-user-info">
|
||
Logged in as:<br />
|
||
<b><span class="username" id="uname_long">username</span></b>
|
||
</div>
|
||
<div class="account-links">
|
||
<ul class="usa-unstyled-list">
|
||
<li><a id="account_myncbi" href="/myncbi/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_myncbi">Dashboard</a></li>
|
||
<li><a id="account_pubs" href="/myncbi/collections/bibliography/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_pubs">Publications</a></li>
|
||
<li><a id="account_settings" href="/account/settings/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_settings">Account settings</a></li>
|
||
<li><a id="account_logout" href="/account/signout/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_logout">Log out</a></li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
</div>
|
||
</div>
|
||
</header>
|
||
<div role="navigation" aria-label="access keys">
|
||
<a id="nws_header_accesskey_0" href="https://www.ncbi.nlm.nih.gov/guide/browsers/#ncbi_accesskeys" class="usa-sr-only" accesskey="0" tabindex="-1">Access keys</a>
|
||
<a id="nws_header_accesskey_1" href="https://www.ncbi.nlm.nih.gov" class="usa-sr-only" accesskey="1" tabindex="-1">NCBI Homepage</a>
|
||
<a id="nws_header_accesskey_2" href="/myncbi/" class="set-base-url usa-sr-only" accesskey="2" tabindex="-1">MyNCBI Homepage</a>
|
||
<a id="nws_header_accesskey_3" href="#maincontent" class="usa-sr-only" accesskey="3" tabindex="-1">Main Content</a>
|
||
<a id="nws_header_accesskey_4" href="#" class="usa-sr-only" accesskey="4" tabindex="-1">Main Navigation</a>
|
||
</div>
|
||
<section data-section="Alerts">
|
||
<div class="ncbi-alerts-placeholder"></div>
|
||
</section>
|
||
</div>
|
||
<div class="header">
|
||
<div class="res_logo"><h1 class="res_name"><a href="/books/" title="Bookshelf home">Bookshelf</a></h1><h2 class="res_tagline"></h2></div>
|
||
<div class="search"><form method="get" action="/books/"><div class="search_form"><label for="database" class="offscreen_noflow">Search database</label><select id="database"><optgroup label="Recent"><option value="books" selected="selected" data-ac_dict="bookshelf-search">Books</option><option value="biosample">BioSample</option><option value="medgen">MedGen</option><option value="dbvar" class="last">dbVar</option></optgroup><optgroup label="All"><option value="gquery">All Databases</option><option value="assembly">Assembly</option><option value="biocollections">Biocollections</option><option value="bioproject">BioProject</option><option value="biosample">BioSample</option><option value="books" data-ac_dict="bookshelf-search">Books</option><option value="clinvar">ClinVar</option><option value="cdd">Conserved Domains</option><option value="gap">dbGaP</option><option value="dbvar">dbVar</option><option value="gene">Gene</option><option value="genome">Genome</option><option value="gds">GEO DataSets</option><option value="geoprofiles">GEO Profiles</option><option value="gtr">GTR</option><option value="ipg">Identical Protein Groups</option><option value="medgen">MedGen</option><option value="mesh">MeSH</option><option value="nlmcatalog">NLM Catalog</option><option value="nuccore">Nucleotide</option><option value="omim">OMIM</option><option value="pmc">PMC</option><option value="protein">Protein</option><option value="proteinclusters">Protein Clusters</option><option value="protfam">Protein Family Models</option><option value="pcassay">PubChem BioAssay</option><option value="pccompound">PubChem Compound</option><option value="pcsubstance">PubChem Substance</option><option value="pubmed">PubMed</option><option value="snp">SNP</option><option value="sra">SRA</option><option value="structure">Structure</option><option value="taxonomy">Taxonomy</option><option value="toolkit">ToolKit</option><option value="toolkitall">ToolKitAll</option><option value="toolkitbookgh">ToolKitBookgh</option></optgroup></select><div class="nowrap"><label for="term" class="offscreen_noflow" accesskey="/">Search term</label><div class="nowrap"><input type="text" name="term" id="term" title="Search Books. Use up and down arrows to choose an item from the autocomplete." value="" class="jig-ncbiclearbutton jig-ncbiautocomplete" data-jigconfig="dictionary:'bookshelf-search',disableUrl:'NcbiSearchBarAutoComplCtrl'" autocomplete="off" data-sbconfig="ds:'no',pjs:'no',afs:'no'" /></div><button id="search" type="submit" class="button_search nowrap" cmd="go">Search</button></div></div></form><ul class="searchlinks inline_list"><li>
|
||
<a href="/books/browse/">Browse Titles</a>
|
||
</li><li>
|
||
<a href="/books/advanced/">Advanced</a>
|
||
</li><li class="help">
|
||
<a href="/books/NBK3833/">Help</a>
|
||
</li><li class="disclaimer">
|
||
<a target="_blank" data-ga-category="literature_resources" data-ga-action="link_click" data-ga-label="disclaimer_link" href="https://www.ncbi.nlm.nih.gov/books/about/disclaimer/">Disclaimer</a>
|
||
</li></ul></div>
|
||
</div>
|
||
|
||
|
||
|
||
<!--<component id="Page" label="headcontent"/>-->
|
||
|
||
</div>
|
||
<div class="content">
|
||
<!-- site messages -->
|
||
<!-- Custom content 1 -->
|
||
<div class="col1">
|
||
|
||
</div>
|
||
|
||
<div class="container">
|
||
<div id="maincontent" class="content eight_col col">
|
||
<!-- Custom content in the left column above book nav -->
|
||
<div class="col2">
|
||
|
||
</div>
|
||
|
||
<!-- Book content -->
|
||
|
||
|
||
<!-- Custom content between navigation and content -->
|
||
<div class="col3">
|
||
|
||
</div>
|
||
|
||
<div class="document">
|
||
<div class="pre-content"><div><div class="bk_prnt"><p class="small">NCBI Bookshelf. A service of the National Library of Medicine, National Institutes of Health.</p><p>SNP FAQ Archive [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2005-. </p></div><div class="messagearea bk_noprnt" style="margin-bottom:1.3846em "><ul class="messages"><li class="warn icon"><span class="icon">This publication is provided for historical reference only and the information may be out of date.</span></li></ul></div><div class="bk_prnt"><p style="color:red;"><strong>This publication is provided for historical reference only and the information may be out of date.</strong></p></div><div class="iconblock clearfix whole_rhythm no_top_margin bk_noprnt"><a class="img_link icnblk_img" title="Table of Contents Page" href="/books/n/helpsnpfaq/"><img class="source-thumb" src="/corehtml/pmc/pmcgifs/bookshelf/thumbs/th-helpsnpfaq-lrg.png" alt="Cover of SNP FAQ Archive" height="100px" width="80px" /></a><div class="icnblk_cntnt eight_col"><h2>SNP FAQ Archive [Internet].</h2><a data-jig="ncbitoggler" href="#__NBK573494_dtls__">Show details</a><div style="display:none" class="ui-widget" id="__NBK573494_dtls__"><div>Bethesda (MD): <a href="https://www.ncbi.nlm.nih.gov/" ref="pagearea=page-banner&targetsite=external&targetcat=link&targettype=publisher">National Center for Biotechnology Information (US)</a>; 2005-.</div></div><div class="half_rhythm"><ul class="inline_list"><li style="margin-right:1em"><a class="bk_cntns" href="/books/n/helpsnpfaq/">Contents</a></li></ul></div></div><div class="icnblk_cntnt two_col"><div class="pagination bk_noprnt"><a class="active page_link prev" href="/books/n/helpsnpfaq/Schema/" title="Previous page in this title">< Prev</a><a class="active page_link next" href="/books/n/helpsnpfaq/Schm_SchemaTable_Def/" title="Next page in this title">Next ></a></div></div></div></div></div>
|
||
<div class="main-content lit-style" itemscope="itemscope" itemtype="http://schema.org/CreativeWork"><div class="meta-content fm-sec"><h1 id="_NBK573494_"><span class="title" itemprop="name">Locating Schema Tables that Contain Specific SNP Data</span></h1><p class="small">Created: <span itemprop="datePublished">August 8, 2005</span>; Last Update: <span itemprop="dateModified">June 15, 2010</span>.</p><p><em>Estimated reading time: 9 minutes</em></p></div><div class="jig-ncbiinpagenav body-content whole_rhythm" data-jigconfig="allHeadingLevels: ['h2'],smoothScroll: false" itemprop="text"><ul class="simple-list"><li><h4>Double Hit Data Table</h4></li><li><p><a href="#Schm_Locating_Schema.which_tables_contai">Which tables contain SNP double-hit information?</a></p></li></ul><ul class="simple-list"><li><h4>Functional (synonymous, non-synonymous, etc.)Data Table</h4></li><li><p><a href="#Schm_Locating_Schema.if_a_snp_is_located">If a SNP is located in an exon region, what column tells me whether or not the SNP is a synonymous or a non-synonymous change?</a></p></li><li><p><a href="#Schm_Locating_Schema.is_information_on_w">Is information on whether or not SNPs are located in the coding region or the promoter region stored in the ""fxn_class" field of "SNPContigLocusId" table?</a></p></li><li><p><a href="#Schm_Locating_Schema.is_there_informatio">Is there information in the table headers that indicate whether or not a SNP is located in an exon (coding), an intron or a UTR region?</a></p></li><li><p><a href="#Schm_Locating_Schema.what_is_the_name_of">What is the name of the table that contains the dbSNP's "OMIM" and "function" data?</a></p></li></ul><ul class="simple-list"><li><h4>Genotype Data Tables</h4></li><li><p><a href="#Schm_Locating_Schema.for_a_given_snp_whe">For a given SNP, where do I find the total number of individuals with genotype data in the dbSNP tables?</a></p></li><li><p><a href="#Schm_Locating_Schema.is_there_a_document">Is there a document that describes the content of the mouse genotype tables in the dbSNP FTP site?</a></p></li></ul><ul class="simple-list"><li><h4>Mapping Data Tables</h4></li><li><p><a href="#Schm_Locating_Schema.where_in_the_ftp_si">Where in the FTP site do I find a table with coordinates of refSNPs (or subSNPs) in the genome (build 36)?</a></p></li><li><p><a href="#Schm_Locating_Schema.which_table_provide">Which table provides the sequence position of a SNP on a gene?</a></p></li><li><p><a href="#Schm_Locating_Schema.where_can_i_downloa">Where can I download files that describe the mapping relationships between human submitted SNPs (ss) and human RefSNPs (rs)?</a></p></li><li><p><a href="#Schm_Locating_Schema.how_do_i_find_a_coo">How do I find a coordinate system based on the underlying clones used in an assembly?</a></p></li><li><p><a href="#Schm_Locating_Schema.can_i_determine_if">Can I determine if a SNP is uniquely mapped if I find a map location for the SNP in b126_SNPContigLoc_36_1, and if the following two mapping conditions are met: rf_ngbr - lf_ngbr - 1 = 1 and rf_ngbr - lf_ngbr = rc_ngbr - lc_ngbr ?</a></p></li><li><p><a href="#Schm_Locating_Schema.how_do_i_determine">How do I determine all trueSNPs that have unique mapping on one assembly?</a></p></li></ul><ul class="simple-list"><li><h4>Merged/Expired RefSNP (rs) Tables</h4></li><li><p><a href="#Schm_Locating_Schema.how_does_the_rsmerg">How does the RsMergeArch table relate to the SNPHistory table?</a></p></li><li><p><a href="#Schm_Locating_Schema.rs4823903_which_has">rs4823903, which has merged into rs4253690 (see RsMergeArch) still appears in SNPChrPosOnRef</a></p></li><li><p><a href="#Schm_Locating_Schema.where_do_i_find_a_l">Where do I find a list of merged RS IDs?</a></p></li><li><p><a href="#Schm_Locating_Schema.where_do_i_find_the">Where do I find the tables storing expired rs id lists (merged, withdrawn, etc.)?</a></p></li></ul><ul class="simple-list"><li><h4>Population Diversity Tables</h4></li><li><p><a href="#Schm_Locating_Schema.which_tables_and_co">Which tables and columns in the schema contain the data found in the Population Diversity section of the refSNP Cluster Report?</a></p></li></ul><ul class="simple-list"><li><h4>Split RefSNP (rs) Table</h4></li><li><p><a href="#Schm_Locating_Schema.i_need_the_refsnp_r">I need the refSNP (rs) split list and thought that it would be in RsSplitArch and RsSplitArch_ssLink, but found that both files were empty. Where is the rs split list?</a></p></li></ul><ul class="simple-list"><li><h4>STS Accession Data Table</h4></li><li><p><a href="#Schm_Locating_Schema.what_table_is_used">What table is used to store dbSTS accessions?</a></p></li></ul><ul class="simple-list"><li><h4>Submission Data Tables</h4></li><li><p><a href="#Schm_Locating_Schema.to_find_the_submitt">To find the submitted population information for a submitted SNP, I did the following: select subsnp_id, batch_id from subsnp where subsnp_id =2984380, but the batch_id's do not line up, and the data_dictionary says I have two foreign keys. What am I doing wrong?</a></p></li></ul><div id="Schm_Locating_Schema.Double_Hit_Data_Tab"><h2 id="_Schm_Locating_Schema_Double_Hit_Data_Tab_">Double Hit Data Table</h2><div><h4 id="Schm_Locating_Schema.which_tables_contai">Which tables contain SNP double-hit information?</h4><blockquote><p>The SNPVal table contains the rs numbers from validation submissions, and has two columns: batch_id and snp_id. To get the entire double hit list that Dr.Jim Mullikin provides to dbSNP, use all the rows in SNPVal that have batch_id = 11597. If you use all the rows in SNPVal that have batch_id =7838, you will get some double hits that dbSNP mined.</p></blockquote></div></div><div id="Schm_Locating_Schema.Functional_synonymo"><h2 id="_Schm_Locating_Schema_Functional_synonymo_">Functional (synonymous, non-synonymous, etc.)Data Table</h2><div><h4 id="Schm_Locating_Schema.if_a_snp_is_located">If a SNP is located in an exon region, what column tells me whether or not the SNP is a synonymous or a non-synonymous change?</h4><blockquote><p>The column FXN_CLASS reports the functional class for the SNP. You can find the column definitions in the <a href="ftp://ftp.ncbi.nlm.nih.gov/snp/database/b124/mssql/schema/DataDictionary_b118.html" ref="pagearea=body&targetsite=external&targetcat=link&targettype=ftp">Data Dictionary</a>. (search for SNPContigLocusId).</p><p>If you want functional data for a just a subset of data, I would suggest trying our batch query service and select FLATFILE format. The FLATFILE format is a human readable format which is defined in an FTP document called “<a href="ftp://ftp.ncbi.nlm.nih.gov/snp/00readme.txt" ref="pagearea=body&targetsite=external&targetcat=link&targettype=ftp">FTP resources for the dbSNP Database</a>”. The LOC lines report the functional data for each SNP.</p></blockquote></div><div><h4 id="Schm_Locating_Schema.is_information_on_w">Is information on whether or not SNPs are located in the coding region or the promoter region stored in the ""fxn_class" field of "SNPContigLocusId" table?</h4><blockquote><p>Yes. <b>(3/22/05)</b></p></blockquote></div><div><h4 id="Schm_Locating_Schema.is_there_informatio">Is there information in the table headers that indicate whether or not a SNP is located in an exon (coding), an intron or a UTR region?</h4><blockquote><p>The SNP functional data are organized by organism and stored in tables with the base name SNPContigLocusId (human data). Prefix 'mm' and 'rn' for mouse or rat data, respectively.</p><p>The table is keyed on rs number and reports the SNP x mRNA feature functional class data based on either SNP location (locus region, UTR, intron, splice site) or location+SNP allele (coding synonymous, nonsynonymous, contig reference).</p></blockquote></div><div><h4 id="Schm_Locating_Schema.what_is_the_name_of">What is the name of the table that contains the dbSNP's "OMIM" and "function" data?</h4><blockquote><p>The data you want is located in tables SNP2Omim and SNPContigLocusId. Please see the <a href="ftp://ftp.ncbi.nlm.nih.gov/snp/database/b124/mssql/schema/DataDictionary_b118.html" ref="pagearea=body&targetsite=external&targetcat=link&targettype=ftp">Data Dictionary</a> for table column descriptions.</p></blockquote></div></div><div id="Schm_Locating_Schema.Genotype_Data_Table"><h2 id="_Schm_Locating_Schema_Genotype_Data_Table_">Genotype Data Tables</h2><div><h4 id="Schm_Locating_Schema.for_a_given_snp_whe">For a given SNP, where do I find the total number of individuals with genotype data in the dbSNP tables?</h4><blockquote><p>Individual counts with genotype data for a refSNP is not directly stored in a table. The web page uses a view that looks at the SNPSubSNPLink table, the SubInd table, and the SubmittedIndividual table.</p><p>See the following example view:</p><pre>create view vwSNP_ind_cnt <br />as<br />select l.snp_id, count(distinct i.ind_id) ind_cnt<br />from dbo.SNPSubSNPLink l, dbo.SubInd s, dbo.SubmittedIndividual i <br />where l.subsnp_id = s.subsnp_id and s.submitted_ind_id =<br />i.submitted_ind_id<br />group by l.snp_id <br />go</pre><p>A data dictionary that includes the definitions for the above three tables and columns is in progress as of this writing (<b>7/03</b>).</p></blockquote></div><div><h4 id="Schm_Locating_Schema.is_there_a_document">Is there a document that describes the content of the mouse genotype tables in the dbSNP FTP site?</h4><blockquote><p>The dbSNP <a href="http://ncbi.nlm.nih.gov/SNP/geno/genoex_doc.html" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">schema documentation</a>, should answer your question. <b>(4/8/05)</b></p></blockquote></div></div><div id="Schm_Locating_Schema.Mapping_Data_Tables"><h2 id="_Schm_Locating_Schema_Mapping_Data_Tables_">Mapping Data Tables</h2><div><h4 id="Schm_Locating_Schema.where_in_the_ftp_si">Where in the FTP site do I find a table with coordinates of refSNPs (or subSNPs) in the genome (build 36)?</h4><blockquote><p>You can find the latest chromosome position of a refSNP in the phys_pos_from column of the b129_SNPContigLoc_36_3 table. (<b>07/10/08</b>)</p></blockquote></div><div><h4 id="Schm_Locating_Schema.which_table_provide">Which table provides the sequence position of a SNP on a gene?</h4><blockquote><p>As far as I know NCBI doesn't have a canonical set of "gene records" that would provide a coordinate system for SNP alignment to genes. NG_ records are curated gene regions, but they do not exist for all genes annotated on the human genome. In any event, we make no systematic effort to map our SNPs to this set apart from NCBI genome alignment.</p><p>dbSNP maintains a table called ContigExon which provides the start and stop positions of each exon in contig coordinates for each mRNA refseq defined in a particular NCBI genome build. We use these coordinates to create the exon placement graphic on our <a href="/SNP/snp_ref.cgi?locusId=9575" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">Geneview display</a>.</p><p>You can obtain the same canonical list of exon boundary information in chromosome coordinates from an NCBI genomes <a href="ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/maps/mapview/BUILD.35.1/seq_gene.md.gz" ref="pagearea=body&targetsite=external&targetcat=link&targettype=ftp">ascii file</a>. <b>(4/20/05)</b></p></blockquote></div><div><h4 id="Schm_Locating_Schema.where_can_i_downloa">Where can I download files that describe the mapping relationships between human submitted SNPs (ss) and human RefSNPs (rs)?</h4><blockquote><p>You can get ss to rs mapping using the <a href="ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/database/organism_data/SNPSubSNPLink.bcp.gz" ref="pagearea=body&targetsite=external&targetcat=link&targettype=ftp">SNPSubSNPLink.bcp.gz</a> table file, located in your organism’s (human, in this case) organism_data directory in the dbSNP ftp site. You can get the field names of the SNPSubSNPLink table from the <a href="ftp://ftp.ncbi.nlm.nih.gov/snp/database/shared_schema/dbSNP_main_table.sql.gz" ref="pagearea=body&targetsite=external&targetcat=link&targettype=ftp">dbSNP_main_table.sql.gz</a> file, located in the <a href="ftp://ftp.ncbi.nlm.nih.gov/snp/database/shared_schema/" ref="pagearea=body&targetsite=external&targetcat=link&targettype=ftp">shared_schema</a> directory of the SNP ftp site. <b>(4/29/05)</b></p></blockquote></div><div><h4 id="Schm_Locating_Schema.how_do_i_find_a_coo">How do I find a coordinate system based on the underlying clones used in an assembly?</h4><blockquote><p>If what you want is the chromosome coordinate system, we have a column in SNPContigLoc for that. The integers located in SNPContigLoc.phys_pos_from record the start position of each SNP, but in a few cases this is left NULL because the position and/or orientation of the underlying contig on the chromosome is not known. We also record an ascii string which is used for display purposes in SNPContigLoc.phys_pos. phys_pos to make it easier to work with.</p><p>When a range or a deletion is involved, it can take one of the three following forms:</p><div id="Schm_Locating_Schema.Tc" class="table"><p class="large-table-link" style="display:none"><span class="right"><a href="/books/NBK573494/table/Schm_Locating_Schema.Tc/?report=objectonly" target="object">View in own window</a></span></p><div class="large_tbl" id="__Schm_Locating_Schema.Tc_lrgtbl__"><table><tbody><tr><td scope="row" rowspan="1" colspan="1" style="text-align:left;vertical-align:top;">
|
||
<p>12345</p>
|
||
</td><td rowspan="1" colspan="1" style="text-align:left;vertical-align:top;">
|
||
<p>a true SNP mapping to a single base</p>
|
||
</td></tr><tr><td scope="row" rowspan="1" colspan="1" style="text-align:left;vertical-align:top;">
|
||
<p>12345^12347</p>
|
||
</td><td rowspan="1" colspan="1" style="text-align:left;vertical-align:top;">
|
||
<p>mapping as a deletion on the chromosome. usually an INDEL</p>
|
||
</td></tr><tr><td scope="row" rowspan="1" colspan="1" style="text-align:left;vertical-align:top;">
|
||
<p>12345..12367</p>
|
||
</td><td rowspan="1" colspan="1" style="text-align:left;vertical-align:top;">
|
||
<p>mapping as a range on the chromosome usually an INDEL or microsatellite.</p>
|
||
</td></tr></tbody></table></div></div></blockquote></div><div><h4 id="Schm_Locating_Schema.can_i_determine_if">Can I determine if a SNP is uniquely mapped if I find a map location for the SNP in b126_SNPContigLoc_36_1, and if the following two mapping conditions are met: rf_ngbr - lf_ngbr - 1 = 1 and rf_ngbr - lf_ngbr = rc_ngbr - lc_ngbr ?</h4><blockquote><p>What you are doing is generally correct, but SNPContigLoc has mapping data for all assemblies (e.g. the human data includes both the NCBI and Celera assemblies), so you’ll need to determine which assembly you have by joining with the ContigInfo table. Also, rf_ngbr - lf_ngbr - 1 = 1 may also include other types of variations, as a result of the method we use to code the variation in rs FASTA: we always use "N" for any length of indel, mixed SNP, MNP, etc. Anything that not using the the IUPAC code letters, we make an "N". As a result, many variations may fit in the two conditions you listed.</p><p>There is an <a href="/SNP/snp_db_table_description.cgi?t=SNPContigLoc" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">online description</a> of the SNPContigLoc table that includes an example sql showing how to determine all trueSNPs that have unique mapping on one assembly. (<b>8/21/06</b>)</p></blockquote></div><div><h4 id="Schm_Locating_Schema.how_do_i_determine">How do I determine all trueSNPs that have unique mapping on one assembly?</h4><blockquote><p>The <a href="/SNP/snp_db_table_description.cgi?t=SNPContigLoc" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">online description</a> of the SNPContigLoc table includes an example sql that shows how to determine all trueSNPs that have unique mapping on one assembly.(<b>8/21/06</b>)</p></blockquote></div></div><div id="Schm_Locating_Schema.MergedExpired_RefSN"><h2 id="_Schm_Locating_Schema_MergedExpired_RefSN_">Merged/Expired RefSNP (rs) Tables</h2><div><h4 id="Schm_Locating_Schema.how_does_the_rsmerg">How does the RsMergeArch table relate to the SNPHistory table?</h4><blockquote><p>Let me explain how we track both merged and deleted (an entirely different process from merging) refSNP (rs) numbers, by using a hypothetical example where a “chain merge” (multiple rs numbers merge into each other) occurs:</p><p>For example, let us say rs ”A” merged into rs ”B”, and later, rs ”B” merged into rs “C”. As a result of the first merge, the entry for rs ”A” in rsCurrent</p><p>is updated to rs “B”; after the second merge, rsCurrent is then updated to rs “C”. Now, if rs “C”’s submitters withdraw all the member ss numbers within the refSNP cluster rs “C”, then rs “C” will get an entry in the SNPHistory table (the SNPHistory table ONLY contains SNPs that have "become history" — that is, SNPs that have been completely deleted). Please see ftp file for SNPHistory.bcp (located in the <a href="ftp://ftp.ncbi.nlm.nih.gov/snp/database/organism_data/human_9606/" ref="pagearea=body&targetsite=external&targetcat=link&targettype=ftp">snp/database/organism_data/species of interest</a> directory). To find the column names for the SNPHistory table, download the human_9606_table.sql, which is located in the <a href="ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/database/organism_schema/" ref="pagearea=body&targetsite=external&targetcat=link&targettype=ftp">human organism_schema directory</a>.</p><p>Getting back to RsMergeArch: since "withdrawing rs “C" is not a merge action, the table RsMergeArch is not updated. RsMergeArch is used to track "rs merge" actions only. I can see that this might be confusing, so when time allows, we will add the following explanation to the RsMergeAch table definition, to make the RsMergeArch.rsCurrent meaning clearer:</p><p>RsMergeArch is used to track each rs merge event.</p><p>If an rs number in RsMergeArch.rsCurrent is withdrawn from dbSNP by submitter request, then an the rs number of the same value as that in rsCurrent will be entered into the SNPHistory table (which contains deleted rs numbers only).</p><p>Please note: "rsCurrent" in RsMergeArch does not mean the "current rs number" in the current dbSNP build". (<b>08/12/08</b>)</p></blockquote></div><div><h4 id="Schm_Locating_Schema.rs4823903_which_has">rs4823903, which has merged into <a href="/snp/?term=4253690" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=term&targettype=snp">rs4253690</a> (see RsMergeArch) still appears in SNPChrPosOnRef</h4><blockquote><p>Cases like rs4823903 have a bit of a twist in their history that you can see in SNPHistory:</p><pre> [502] MSSNP_LOAD.human_9606.2> select * from SNPHistory where snp_id =4823903<br />[502] MSSNP_LOAD.human_9606.3> go -mvertsnp_id:              4823903<br /><br />create_time:         Feb 20 2003 01:26PM<br />last_updated_time:   Sep 07 2006 01:03PM<br />history_create_time: Oct 25 2006 12:19PM<br />comment: Re-activated:PHARMGKB:rs4823903|b126->rs60186231|b129:<a href="/nuccore/89059047" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=link&targettype=nuccore">NT_011523</a>.11_1851628</pre><p>Submitter PHARMGKB submitted many high visibility SNPs in 2003, but also withdrew a large batch in 2006. Many of their SNPs are still valid and have been cited and used successfully in experiments by dbSNP users. PHARMGKB has since re-submitted many of their withdrawn SNPs to dbSNP, and we decided to "re-activate" the same rs numbers for those SNPs that have the same flanking sequences.</p><p>The "re-activation" was noted in the SNPHistory.comment field. For those re-activated SNPs that merged, I did not go back to change the merge history since it was an event that had indeed occurred. I can see that more work need to be done to clarify the multiple sequence of events for these SNPs. For users who actually use data from RsMergeArch and SNPHistory such clarification is necessary. (<b>09/09/08</b>)</p></blockquote></div><div><h4 id="Schm_Locating_Schema.where_do_i_find_a_l">Where do I find a list of merged RS IDs?</h4><blockquote><p>The merge history is in the <a href="ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/database/organism_data/RsMergeArch.bcp.gz" ref="pagearea=body&targetsite=external&targetcat=link&targettype=ftp">RsMergeArch.bcp</a> table:</p><p>Example:</p><pre>zgrep 12753158 RsMergeArch.bcp.gz<br />12753158 7539545 123 0 2004-09-24 18:47:00 <br /> 2004-10-10 12:15:00 7539545 0</pre><p>The <a href="/SNP/snp_db_list_table.cgi?fld=TableName&cond=contains&srch=RsMergeArch&srch=&cond=&type=&fld=&go=Search+%28case+insensitive%29&.cgifields=cond&.cgifields=fld" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">RsMergeArch table description</a> can be found by using the table name search option in the dbSNP database dictionary.</p><p>You can also retrieve a list of merged rs numbers from <a href="/sites/entrez?db=snp" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">Entrez SNP</a>. Just type “mergedrs” (without the quotation marks) in the text box at the top of the page and click the “go” button. Each entry in the returned list will include the old rs numbers that has merged, and the new rs number it has merged into (with a link to the refSNPpage for the new rs number). You can limit the output to merged rs numbers within a certain species by clicking on the “Limits” tab and then selecting the organism you wish from the organism selection box. (<b>2/27/06:11/03/08</b>)</p></blockquote></div><div><h4 id="Schm_Locating_Schema.where_do_i_find_the">Where do I find the tables storing expired rs id lists (merged, withdrawn, etc.)?</h4><blockquote><p>The tables you require are:<br />RsMergeArch.<br />SubSNPDeletedBySubmitter<br />SNPSubSNPLinkHistory<br />SNPHistory<br />SubSNPDelComm</p><p>For table descriptions, see the <a href="ftp://ftp.ncbi.nlm.nih.gov/snp/database/b124/mssql/schema/DataDictionary_b118.html" ref="pagearea=body&targetsite=external&targetcat=link&targettype=ftp">Data Dictionary</a></p></blockquote></div></div><div id="Schm_Locating_Schema.Population_Diversit"><h2 id="_Schm_Locating_Schema_Population_Diversit_">Population Diversity Tables</h2><div><h4 id="Schm_Locating_Schema.which_tables_and_co">Which tables and columns in the schema contain the data found in the Population Diversity section of the refSNP Cluster Report?</h4><blockquote><p>The three values below, found in the refSNP Population Diversity section, are from tables in the SNP annotation area of the schema pdf:</p><p>Hardy-Weinberg Probability is located in the SNPHWProb table. <br />Average estimated heterozygosity is located in the SNP table. <br />Average Allele Frequency is located in the SNPAlleleFreq table.</p><p>Assay sample size (number of chromosomes), Population data sample size (number of chromosomes), Total number of populations with frequency data, and Total number of individuals with genotype data are all located in the refSNP page Population Diversity section, and are all computed on the fly.</p></blockquote></div></div><div id="Schm_Locating_Schema.Split_RefSNP_rs_Tab"><h2 id="_Schm_Locating_Schema_Split_RefSNP_rs_Tab_">Split RefSNP (rs) Table</h2><div><h4 id="Schm_Locating_Schema.i_need_the_refsnp_r">I need the refSNP (rs) split list and thought that it would be in RsSplitArch and RsSplitArch_ssLink, but found that both files were empty. Where is the rs split list?</h4><blockquote><p>The RsSplitArch table is the reverse of the RsMergeArch table; it currently has 70 rows, and its content is based on submitter feedback regarding our rs cluster merging results. For example, <a href="/snp/?term=13361" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=term&targettype=snp">rs13361</a> was merged into <a href="/snp/?term=6154" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=term&targettype=snp">rs6154</a> on 4/21/2003. Later, the submitter of both rs numbers reported that the two variations were truly different and should not be merged. As a result of this comment, we split <a href="/snp/?term=6154" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=term&targettype=snp">rs6154</a> back to <a href="/snp/?term=13361" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=term&targettype=snp">rs13361</a> and <a href="/snp/?term=6154" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=term&targettype=snp">rs6154</a>, removed the <a href="/snp/?term=1336" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=term&targettype=snp">rs1336</a> to <a href="/snp/?term=6154" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=term&targettype=snp">rs6154</a> rows in RsMergeArch table, and then saved this "split or merge reversal" fact in the RsSplitArch table.</p><p>Rs split processing is still not integrated or automated at this time. The split data is located in an internal dbSNP database. If you are interested in obtaining the list of the 70 rs cluster splits, let dbSNP know, and we can email the file to you. (<b>2/27/06</b>)</p></blockquote></div></div><div id="Schm_Locating_Schema.STS_Accession_Data"><h2 id="_Schm_Locating_Schema_STS_Accession_Data_">STS Accession Data Table</h2><div><h4 id="Schm_Locating_Schema.what_table_is_used">What table is used to store dbSTS accessions?</h4><blockquote><p>dbSNP.SubSNPAcc.acc_part stores dbSTS accessions when SubSNPAcc.acc_type_ind = 'S'.</p><p>For example:</p><pre>select top 10 * from SubSNPAcc <br />where acc_type_ind = 'S' and acc_part like '[ZG]%' <br />--( Most dbSTS accession starts with "G" or "Z".)<br /><br />subsnp_id acc_type_ind acc_part acc_ver <br />--------- ------------ -------- ------- <br />4206 S <a href="/nuccore/1009483" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=link&targettype=nuccore">G01792</a> NULL<br />4020 S <a href="/nuccore/1009604" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=link&targettype=nuccore">G01913</a> NULL<br />4021 S <a href="/nuccore/1009667" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=link&targettype=nuccore">G01976</a> NULL<br />2304 S <a href="/nuccore/719321" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=link&targettype=nuccore">G02363</a> NULL<br />2381 S <a href="/nuccore/719323" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=link&targettype=nuccore">G02365</a> NULL<br />743 S <a href="/nuccore/719326" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=link&targettype=nuccore">G02368</a> NULL<br />2297 S <a href="/nuccore/719338" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=link&targettype=nuccore">G02380</a> NULL<br />2298 S <a href="/nuccore/719338" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=link&targettype=nuccore">G02380</a> NULL<br />19462 S <a href="/nuccore/719338" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=link&targettype=nuccore">G02380</a> NULL<br />2170 S <a href="/nuccore/719352" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=link&targettype=nuccore">G02394</a> NULL<br /><br />(10 row(s) affected)</pre></blockquote></div><p>SubSNPAcc.acc_ver is null in this case, because most dbSTS accessions do not have a version number</p></div><div id="Schm_Locating_Schema.Submission_Data_Tab"><h2 id="_Schm_Locating_Schema_Submission_Data_Tab_">Submission Data Tables</h2><div><h4 id="Schm_Locating_Schema.to_find_the_submitt">To find the submitted population information for a submitted SNP, I did the following: select subsnp_id, batch_id from subsnp where subsnp_id =2984380, but the batch_id's do not line up, and the data_dictionary says I have two foreign keys. What am I doing wrong?</h4><blockquote><p>SubSNP and SubPop data are submitted in different batches, with the batch_type beginning 'SNP' and 'POP' respectively.</p><p>TSC-CSHL submits over 10K in population data under new batch IDs (batch type POP) for existing ss numbers that were submitted earlier under various batch_id of batch type 'SNP'. Take a look at this <a href="/SNP/snp_ss.cgi?ss=14759" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">example</a> on dbSNP.</p><p>To get population information for which the submitted SNP has frequency, given a submitted SNP, joining on the ss number is enough. You don't need to go through Batch. Also, note that the population text is in the PopLine table. Try using the following SQL on ss number</p><p>14759:</p><pre>select distinct p.pop_id, pl.line_num, pl.line,p.handle <br />from SubPop sp <br />join Population p on sp.pop_id = p.pop_id join PopLine pl on p.pop_id = pl.pop_id <br />where sp.subsnp_id = 2984380 <br />order by p.pop_id, pl.line_num</pre><p>This SQL returns: <br />pop_id: 738<br />line_num: 0<br />line: 752 anonymous unrelated Japanese volunteers<br />handle: YUSUKE</p><p>pop_id: 738<br />line_num: 1<br />line: Nation:Japan<br />handle: YUSUKE</p><p>(2 rows affected)</p><p>The data dictionary says that SubSNP.batch_id references Batch.batch_id; SubPop.batch_id references batch_id; and SubSNP.subsnp_id references SubSNP.subsnp_id. The <a href="ftp://ftp.ncbi.nlm.nih.gov/snp/database/b124/mssql/schema/erd_dbSNP.pdf" ref="pagearea=body&targetsite=external&targetcat=link&targettype=ftp">ER</a> diagram makes this relationship much more clear.</p></blockquote></div></div><div id="bk_toc_contnr"></div></div></div>
|
||
<div class="post-content"><div><div class="half_rhythm"><a href="/books/about/copyright/">Copyright Notice</a></div><div class="small"><span class="label">Bookshelf ID: NBK573494</span></div><div style="margin-top:2em" class="bk_noprnt"><a class="bk_cntns" href="/books/n/helpsnpfaq/">Contents</a><div class="pagination bk_noprnt"><a class="active page_link prev" href="/books/n/helpsnpfaq/Schema/" title="Previous page in this title">< Prev</a><a class="active page_link next" href="/books/n/helpsnpfaq/Schm_SchemaTable_Def/" title="Next page in this title">Next ></a></div></div></div></div>
|
||
|
||
</div>
|
||
|
||
<!-- Custom content below content -->
|
||
<div class="col4">
|
||
|
||
</div>
|
||
|
||
|
||
<!-- Book content -->
|
||
|
||
<!-- Custom contetnt below bottom nav -->
|
||
<div class="col5">
|
||
|
||
</div>
|
||
</div>
|
||
|
||
<div id="rightcolumn" class="four_col col last">
|
||
<!-- Custom content above discovery portlets -->
|
||
<div class="col6">
|
||
<div id="ncbi_share_book"><a href="#" class="ncbi_share" data-ncbi_share_config="popup:false,shorten:true" ref="id=NBK573494&db=books">Share</a></div>
|
||
|
||
</div>
|
||
<div xmlns:np="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"></div><div class="portlet"><div class="portlet_head"><div class="portlet_title"><h3><span>Views</span></h3></div><a name="Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="PDF_download" id="Shutter"></a></div><div class="portlet_content"><ul xmlns:np="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" class="simple-list"><li><a href="/books/NBK573494/?report=reader">PubReader</a></li><li><a href="/books/NBK573494/?report=printable">Print View</a></li><li><a data-jig="ncbidialog" href="#_ncbi_dlg_citbx_NBK573494" data-jigconfig="width:400,modal:true">Cite this Page</a><div id="_ncbi_dlg_citbx_NBK573494" style="display:none" title="Cite this Page"><div class="bk_tt">SNP FAQ Archive [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2005-. Locating Schema Tables that Contain Specific SNP Data. 2005 Aug 8 [Updated 2010 Jun 15].<span class="bk_cite_avail"></span></div></div></li><li><a href="/books/NBK573494/pdf/Bookshelf_NBK573494.pdf">PDF version of this page</a> (93K)</li><li><a href="/books/n/helpsnpfaq/pdf/">PDF version of this title</a> (17K)</li></ul></div></div><div class="portlet"><div class="portlet_head"><div class="portlet_title"><h3><span>In this Page</span></h3></div><a name="Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="page-toc" id="Shutter"></a></div><div class="portlet_content"><ul xmlns:np="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" class="simple-list"><li><a href="#Schm_Locating_Schema.Double_Hit_Data_Tab" ref="log$=inpage&link_id=inpage">Double Hit Data Table</a></li><li><a href="#Schm_Locating_Schema.Functional_synonymo" ref="log$=inpage&link_id=inpage">Functional (synonymous, non-synonymous, etc.)Data Table</a></li><li><a href="#Schm_Locating_Schema.Genotype_Data_Table" ref="log$=inpage&link_id=inpage">Genotype Data Tables</a></li><li><a href="#Schm_Locating_Schema.Mapping_Data_Tables" ref="log$=inpage&link_id=inpage">Mapping Data Tables</a></li><li><a href="#Schm_Locating_Schema.MergedExpired_RefSN" ref="log$=inpage&link_id=inpage">Merged/Expired RefSNP (rs) Tables</a></li><li><a href="#Schm_Locating_Schema.Population_Diversit" ref="log$=inpage&link_id=inpage">Population Diversity Tables</a></li><li><a href="#Schm_Locating_Schema.Split_RefSNP_rs_Tab" ref="log$=inpage&link_id=inpage">Split RefSNP (rs) Table</a></li><li><a href="#Schm_Locating_Schema.STS_Accession_Data" ref="log$=inpage&link_id=inpage">STS Accession Data Table</a></li><li><a href="#Schm_Locating_Schema.Submission_Data_Tab" ref="log$=inpage&link_id=inpage">Submission Data Tables</a></li></ul></div></div><div class="portlet"><div class="portlet_head"><div class="portlet_title"><h3><span>Other titles in this collection</span></h3></div><a name="Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="source-links" id="Shutter"></a></div><div class="portlet_content"><ul xmlns:np="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" class="simple-list"><li><a href="/books/n/helpcollect/">NCBI Help Manual</a></li></ul></div></div><div class="portlet"><div class="portlet_head"><div class="portlet_title"><h3><span>Recent Activity</span></h3></div><a name="Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="recent_activity" id="Shutter"></a></div><div class="portlet_content"><div xmlns:np="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" id="HTDisplay" class=""><div class="action"><a href="javascript:historyDisplayState('ClearHT')">Clear</a><a href="javascript:historyDisplayState('HTOff')" class="HTOn">Turn Off</a><a href="javascript:historyDisplayState('HTOn')" class="HTOff">Turn On</a></div><ul id="activity"><li class="ra_rcd ralinkpopper two_line"><a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=1" href="/portal/utils/pageresolver.fcgi?recordid=67c8c536a68b6b5afce90b84">Locating Schema Tables that Contain Specific SNP Data - SNP FAQ Archive</a><div class="ralinkpop offscreen_noflow">Locating Schema Tables that Contain Specific SNP Data - SNP FAQ Archive<div class="brieflinkpopdesc"></div></div><div class="tertiary"></div></li><li class="ra_rcd ralinkpopper two_line"><a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=2" href="/portal/utils/pageresolver.fcgi?recordid=67c8c535b15b832ebc834f0c">dbSNP Organization and Structure (Schema) - SNP FAQ Archive</a><div class="ralinkpop offscreen_noflow">dbSNP Organization and Structure (Schema) - SNP FAQ Archive<div class="brieflinkpopdesc"></div></div><div class="tertiary"></div></li><li class="ra_rcd ralinkpopper two_line"><a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=3" href="/portal/utils/pageresolver.fcgi?recordid=67c8c534f4a390645ea4f59f">Eutils (E-utilities) - SNP FAQ Archive</a><div class="ralinkpop offscreen_noflow">Eutils (E-utilities) - SNP FAQ Archive<div class="brieflinkpopdesc"></div></div><div class="tertiary"></div></li><li class="ra_rcd ralinkpopper two_line"><a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=4" href="/portal/utils/pageresolver.fcgi?recordid=67c8c533f4a390645ea4f131">Updating dbSNP’s FTP data - SNP FAQ Archive</a><div class="ralinkpop offscreen_noflow">Updating dbSNP’s FTP data - SNP FAQ Archive<div class="brieflinkpopdesc"></div></div><div class="tertiary"></div></li><li class="ra_rcd ralinkpopper two_line"><a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=5" href="/portal/utils/pageresolver.fcgi?recordid=67c8c533b15b832ebc834343">Direct Queries of dbSNP’s Database Server - SNP FAQ Archive</a><div class="ralinkpop offscreen_noflow">Direct Queries of dbSNP’s Database Server - SNP FAQ Archive<div class="brieflinkpopdesc"></div></div><div class="tertiary"></div></li></ul><p class="HTOn">Your browsing activity is empty.</p><p class="HTOff">Activity recording is turned off.</p><p id="turnOn" class="HTOff"><a href="javascript:historyDisplayState('HTOn')">Turn recording back on</a></p><a class="seemore" href="/sites/myncbi/recentactivity">See more...</a></div></div></div>
|
||
|
||
<!-- Custom content below discovery portlets -->
|
||
<div class="col7">
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
<!-- Custom content after all -->
|
||
<div class="col8">
|
||
|
||
</div>
|
||
<div class="col9">
|
||
|
||
</div>
|
||
|
||
<script type="text/javascript" src="/corehtml/pmc/js/jquery.scrollTo-1.4.2.js"></script>
|
||
<script type="text/javascript">
|
||
(function($){
|
||
$('.skiplink').each(function(i, item){
|
||
var href = $($(item).attr('href'));
|
||
href.attr('tabindex', '-1').addClass('skiptarget'); // ensure the target can receive focus
|
||
$(item).on('click', function(event){
|
||
event.preventDefault();
|
||
$.scrollTo(href, 0, {
|
||
onAfter: function(){
|
||
href.focus();
|
||
}
|
||
});
|
||
});
|
||
});
|
||
})(jQuery);
|
||
</script>
|
||
</div>
|
||
<div class="bottom">
|
||
<script type="text/javascript">
|
||
var PBooksSearchTermData = {
|
||
highlighter: "bold",
|
||
dateTime: "03/05/2025 16:32:49",
|
||
terms: [
|
||
'attack', 'heart', 'heart attack', 'infarction', 'myocardial', 'myocardial infarction', 'myocardial infarction', 'myocardial infarction'
|
||
]
|
||
};
|
||
</script>
|
||
<div id="NCBIFooter_dynamic">
|
||
<!--<component id="Breadcrumbs" label="breadcrumbs"/>
|
||
<component id="Breadcrumbs" label="helpdesk"/>-->
|
||
|
||
</div>
|
||
|
||
<div class="footer" id="footer">
|
||
<section class="icon-section">
|
||
<div id="icon-section-header" class="icon-section_header">Follow NCBI</div>
|
||
<div class="grid-container container">
|
||
<div class="icon-section_container">
|
||
<a class="footer-icon" id="footer_twitter" href="https://twitter.com/ncbi" aria-label="Twitter"><svg xmlns="http://www.w3.org/2000/svg" data-name="Layer 1" viewBox="0 0 300 300">
|
||
<defs>
|
||
<style>
|
||
.cls-11 {
|
||
fill: #737373;
|
||
}
|
||
</style>
|
||
</defs>
|
||
<title>Twitter</title>
|
||
<path class="cls-11" d="M250.11,105.48c-7,3.14-13,3.25-19.27.14,8.12-4.86,8.49-8.27,11.43-17.46a78.8,78.8,0,0,1-25,9.55,39.35,39.35,0,0,0-67,35.85,111.6,111.6,0,0,1-81-41.08A39.37,39.37,0,0,0,81.47,145a39.08,39.08,0,0,1-17.8-4.92c0,.17,0,.33,0,.5a39.32,39.32,0,0,0,31.53,38.54,39.26,39.26,0,0,1-17.75.68,39.37,39.37,0,0,0,36.72,27.3A79.07,79.07,0,0,1,56,223.34,111.31,111.31,0,0,0,116.22,241c72.3,0,111.83-59.9,111.83-111.84,0-1.71,0-3.4-.1-5.09C235.62,118.54,244.84,113.37,250.11,105.48Z">
|
||
</path>
|
||
</svg></a>
|
||
<a class="footer-icon" id="footer_facebook" href="https://www.facebook.com/ncbi.nlm" aria-label="Facebook"><svg xmlns="http://www.w3.org/2000/svg" data-name="Layer 1" viewBox="0 0 300 300">
|
||
<title>Facebook</title>
|
||
<path class="cls-11" d="M210.5,115.12H171.74V97.82c0-8.14,5.39-10,9.19-10h27.14V52l-39.32-.12c-35.66,0-42.42,26.68-42.42,43.77v19.48H99.09v36.32h27.24v109h45.41v-109h35Z">
|
||
</path>
|
||
</svg></a>
|
||
<a class="footer-icon" id="footer_linkedin" href="https://www.linkedin.com/company/ncbinlm" aria-label="LinkedIn"><svg xmlns="http://www.w3.org/2000/svg" data-name="Layer 1" viewBox="0 0 300 300">
|
||
<title>LinkedIn</title>
|
||
<path class="cls-11" d="M101.64,243.37H57.79v-114h43.85Zm-22-131.54h-.26c-13.25,0-21.82-10.36-21.82-21.76,0-11.65,8.84-21.15,22.33-21.15S101.7,78.72,102,90.38C102,101.77,93.4,111.83,79.63,111.83Zm100.93,52.61A17.54,17.54,0,0,0,163,182v61.39H119.18s.51-105.23,0-114H163v13a54.33,54.33,0,0,1,34.54-12.66c26,0,44.39,18.8,44.39,55.29v58.35H198.1V182A17.54,17.54,0,0,0,180.56,164.44Z">
|
||
</path>
|
||
</svg></a>
|
||
<a class="footer-icon" id="footer_github" href="https://github.com/ncbi" aria-label="GitHub"><svg xmlns="http://www.w3.org/2000/svg" data-name="Layer 1" viewBox="0 0 300 300">
|
||
<defs>
|
||
<style>
|
||
.cls-11,
|
||
.cls-12 {
|
||
fill: #737373;
|
||
}
|
||
|
||
.cls-11 {
|
||
fill-rule: evenodd;
|
||
}
|
||
</style>
|
||
</defs>
|
||
<title>GitHub</title>
|
||
<path class="cls-11" d="M151.36,47.28a105.76,105.76,0,0,0-33.43,206.1c5.28,1,7.22-2.3,7.22-5.09,0-2.52-.09-10.85-.14-19.69-29.42,6.4-35.63-12.48-35.63-12.48-4.81-12.22-11.74-15.47-11.74-15.47-9.59-6.56.73-6.43.73-6.43,10.61.75,16.21,10.9,16.21,10.9,9.43,16.17,24.73,11.49,30.77,8.79,1-6.83,3.69-11.5,6.71-14.14C108.57,197.1,83.88,188,83.88,147.51a40.92,40.92,0,0,1,10.9-28.39c-1.1-2.66-4.72-13.42,1-28,0,0,8.88-2.84,29.09,10.84a100.26,100.26,0,0,1,53,0C198,88.3,206.9,91.14,206.9,91.14c5.76,14.56,2.14,25.32,1,28a40.87,40.87,0,0,1,10.89,28.39c0,40.62-24.74,49.56-48.29,52.18,3.79,3.28,7.17,9.71,7.17,19.58,0,14.15-.12,25.54-.12,29,0,2.82,1.9,6.11,7.26,5.07A105.76,105.76,0,0,0,151.36,47.28Z">
|
||
</path>
|
||
<path class="cls-12" d="M85.66,199.12c-.23.52-1.06.68-1.81.32s-1.2-1.06-.95-1.59,1.06-.69,1.82-.33,1.21,1.07.94,1.6Zm-1.3-1">
|
||
</path>
|
||
<path class="cls-12" d="M90,203.89c-.51.47-1.49.25-2.16-.49a1.61,1.61,0,0,1-.31-2.19c.52-.47,1.47-.25,2.17.49s.82,1.72.3,2.19Zm-1-1.08">
|
||
</path>
|
||
<path class="cls-12" d="M94.12,210c-.65.46-1.71,0-2.37-.91s-.64-2.07,0-2.52,1.7,0,2.36.89.65,2.08,0,2.54Zm0,0"></path>
|
||
<path class="cls-12" d="M99.83,215.87c-.58.64-1.82.47-2.72-.41s-1.18-2.06-.6-2.7,1.83-.46,2.74.41,1.2,2.07.58,2.7Zm0,0">
|
||
</path>
|
||
<path class="cls-12" d="M107.71,219.29c-.26.82-1.45,1.2-2.64.85s-2-1.34-1.74-2.17,1.44-1.23,2.65-.85,2,1.32,1.73,2.17Zm0,0">
|
||
</path>
|
||
<path class="cls-12" d="M116.36,219.92c0,.87-1,1.59-2.24,1.61s-2.29-.68-2.3-1.54,1-1.59,2.26-1.61,2.28.67,2.28,1.54Zm0,0">
|
||
</path>
|
||
<path class="cls-12" d="M124.42,218.55c.15.85-.73,1.72-2,1.95s-2.37-.3-2.52-1.14.73-1.75,2-2,2.37.29,2.53,1.16Zm0,0"></path>
|
||
</svg></a>
|
||
<a class="footer-icon" id="footer_blog" href="https://ncbiinsights.ncbi.nlm.nih.gov/" aria-label="Blog">
|
||
<svg xmlns="http://www.w3.org/2000/svg" id="Layer_1" data-name="Layer 1" viewBox="0 0 40 40">
|
||
<defs><style>.cls-1{fill:#737373;}</style></defs>
|
||
<title>NCBI Insights Blog</title>
|
||
<path class="cls-1" d="M14,30a4,4,0,1,1-4-4,4,4,0,0,1,4,4Zm11,3A19,19,0,0,0,7.05,15a1,1,0,0,0-1,1v3a1,1,0,0,0,.93,1A14,14,0,0,1,20,33.07,1,1,0,0,0,21,34h3a1,1,0,0,0,1-1Zm9,0A28,28,0,0,0,7,6,1,1,0,0,0,6,7v3a1,1,0,0,0,1,1A23,23,0,0,1,29,33a1,1,0,0,0,1,1h3A1,1,0,0,0,34,33Z"></path>
|
||
</svg>
|
||
</a>
|
||
</div>
|
||
</div>
|
||
</section>
|
||
|
||
<section class="container-fluid bg-primary">
|
||
<div class="container pt-5">
|
||
<div class="row mt-3">
|
||
<div class="col-lg-3 col-12">
|
||
<p><a class="text-white" href="https://www.nlm.nih.gov/socialmedia/index.html">Connect with NLM</a></p>
|
||
<ul class="list-inline social_media">
|
||
<li class="list-inline-item"><a href="https://twitter.com/NLM_NIH" aria-label="Twitter" target="_blank" rel="noopener noreferrer"><svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" x="0px" y="0px" viewBox="0 0 249 249" style="enable-background:new 0 0 249 249;" xml:space="preserve">
|
||
<style type="text/css">
|
||
.st20 {
|
||
fill: #FFFFFF;
|
||
}
|
||
|
||
.st30 {
|
||
fill: none;
|
||
stroke: #FFFFFF;
|
||
stroke-width: 8;
|
||
stroke-miterlimit: 10;
|
||
}
|
||
</style>
|
||
<title>Twitter</title>
|
||
<g>
|
||
<g>
|
||
<g>
|
||
<path class="st20" d="M192.9,88.1c-5,2.2-9.2,2.3-13.6,0.1c5.7-3.4,6-5.8,8.1-12.3c-5.4,3.2-11.4,5.5-17.6,6.7 c-10.5-11.2-28.1-11.7-39.2-1.2c-7.2,6.8-10.2,16.9-8,26.5c-22.3-1.1-43.1-11.7-57.2-29C58,91.6,61.8,107.9,74,116 c-4.4-0.1-8.7-1.3-12.6-3.4c0,0.1,0,0.2,0,0.4c0,13.2,9.3,24.6,22.3,27.2c-4.1,1.1-8.4,1.3-12.5,0.5c3.6,11.3,14,19,25.9,19.3 c-11.6,9.1-26.4,13.2-41.1,11.5c12.7,8.1,27.4,12.5,42.5,12.5c51,0,78.9-42.2,78.9-78.9c0-1.2,0-2.4-0.1-3.6 C182.7,97.4,189.2,93.7,192.9,88.1z"></path>
|
||
</g>
|
||
</g>
|
||
<circle class="st30" cx="124.4" cy="128.8" r="108.2"></circle>
|
||
</g>
|
||
</svg></a></li>
|
||
<li class="list-inline-item"><a href="https://www.facebook.com/nationallibraryofmedicine" aria-label="Facebook" rel="noopener noreferrer" target="_blank">
|
||
<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" x="0px" y="0px" viewBox="0 0 249 249" style="enable-background:new 0 0 249 249;" xml:space="preserve">
|
||
<style type="text/css">
|
||
.st10 {
|
||
fill: #FFFFFF;
|
||
}
|
||
|
||
.st110 {
|
||
fill: none;
|
||
stroke: #FFFFFF;
|
||
stroke-width: 8;
|
||
stroke-miterlimit: 10;
|
||
}
|
||
</style>
|
||
<title>Facebook</title>
|
||
<g>
|
||
<g>
|
||
<path class="st10" d="M159,99.1h-24V88.4c0-5,3.3-6.2,5.7-6.2h16.8V60l-24.4-0.1c-22.1,0-26.2,16.5-26.2,27.1v12.1H90v22.5h16.9 v67.5H135v-67.5h21.7L159,99.1z"></path>
|
||
</g>
|
||
</g>
|
||
<circle class="st110" cx="123.6" cy="123.2" r="108.2"></circle>
|
||
</svg>
|
||
</a></li>
|
||
<li class="list-inline-item"><a href="https://www.youtube.com/user/NLMNIH" aria-label="Youtube" target="_blank" rel="noopener noreferrer"><svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" x="0px" y="0px" viewBox="0 0 249 249" style="enable-background:new 0 0 249 249;" xml:space="preserve">
|
||
<title>Youtube</title>
|
||
<style type="text/css">
|
||
.st4 {
|
||
fill: none;
|
||
stroke: #FFFFFF;
|
||
stroke-width: 8;
|
||
stroke-miterlimit: 10;
|
||
}
|
||
|
||
.st5 {
|
||
fill: #FFFFFF;
|
||
}
|
||
</style>
|
||
<circle class="st4" cx="124.2" cy="123.4" r="108.2"></circle>
|
||
<g transform="translate(0,-952.36218)">
|
||
<path class="st5" d="M88.4,1037.4c-10.4,0-18.7,8.3-18.7,18.7v40.1c0,10.4,8.3,18.7,18.7,18.7h72.1c10.4,0,18.7-8.3,18.7-18.7 v-40.1c0-10.4-8.3-18.7-18.7-18.7H88.4z M115.2,1058.8l29.4,17.4l-29.4,17.4V1058.8z"></path>
|
||
</g>
|
||
</svg></a></li>
|
||
</ul>
|
||
</div>
|
||
<div class="col-lg-3 col-12">
|
||
<p class="address_footer text-white">National Library of Medicine<br />
|
||
<a href="https://www.google.com/maps/place/8600+Rockville+Pike,+Bethesda,+MD+20894/@38.9959508,-77.101021,17z/data=!3m1!4b1!4m5!3m4!1s0x89b7c95e25765ddb:0x19156f88b27635b8!8m2!3d38.9959508!4d-77.0988323" class="text-white" target="_blank" rel="noopener noreferrer">8600 Rockville Pike<br />
|
||
Bethesda, MD 20894</a></p>
|
||
</div>
|
||
<div class="col-lg-3 col-12 centered-lg">
|
||
<p><a href="https://www.nlm.nih.gov/web_policies.html" class="text-white">Web Policies</a><br />
|
||
<a href="https://www.nih.gov/institutes-nih/nih-office-director/office-communications-public-liaison/freedom-information-act-office" class="text-white">FOIA</a><br />
|
||
<a href="https://www.hhs.gov/vulnerability-disclosure-policy/index.html" class="text-white" id="vdp">HHS Vulnerability Disclosure</a></p>
|
||
</div>
|
||
<div class="col-lg-3 col-12 centered-lg">
|
||
<p><a class="supportLink text-white" href="https://support.nlm.nih.gov/">Help</a><br />
|
||
<a href="https://www.nlm.nih.gov/accessibility.html" class="text-white">Accessibility</a><br />
|
||
<a href="https://www.nlm.nih.gov/careers/careers.html" class="text-white">Careers</a></p>
|
||
</div>
|
||
</div>
|
||
<div class="row">
|
||
<div class="col-lg-12 centered-lg">
|
||
<nav class="bottom-links">
|
||
<ul class="mt-3">
|
||
<li>
|
||
<a class="text-white" href="//www.nlm.nih.gov/">NLM</a>
|
||
</li>
|
||
<li>
|
||
<a class="text-white" href="https://www.nih.gov/">NIH</a>
|
||
</li>
|
||
<li>
|
||
<a class="text-white" href="https://www.hhs.gov/">HHS</a>
|
||
</li>
|
||
<li>
|
||
<a class="text-white" href="https://www.usa.gov/">USA.gov</a>
|
||
</li>
|
||
</ul>
|
||
</nav>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</section>
|
||
<script type="text/javascript" src="/portal/portal3rc.fcgi/rlib/js/InstrumentOmnitureBaseJS/InstrumentNCBIConfigJS/InstrumentNCBIBaseJS/InstrumentPageStarterJS.js?v=1"> </script>
|
||
<script type="text/javascript" src="/portal/portal3rc.fcgi/static/js/hfjs2.js"> </script>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
<!--/.page-->
|
||
</div>
|
||
<!--/.wrap-->
|
||
</div><!-- /.twelve_col -->
|
||
</div>
|
||
<!-- /.grid -->
|
||
|
||
<span class="PAFAppResources"></span>
|
||
|
||
<!-- BESelector tab -->
|
||
|
||
|
||
|
||
<noscript><img alt="statistics" src="/stat?jsdisabled=true&ncbi_db=books&ncbi_pdid=book-part&ncbi_acc=NBK573494&ncbi_domain=helpsnpfaq&ncbi_report=record&ncbi_type=fulltext&ncbi_objectid=&ncbi_pcid=/NBK573494/&ncbi_pagename=Locating Schema Tables that Contain Specific SNP Data - SNP FAQ Archive - NCBI Bookshelf&ncbi_bookparttype=chapter&ncbi_app=bookshelf" /></noscript>
|
||
|
||
|
||
<!-- usually for JS scripts at page bottom -->
|
||
<!--<component id="PageFixtures" label="styles"></component>-->
|
||
|
||
|
||
<!-- CE8B5AF87C7FFCB1_0191SID /projects/books/PBooks@9.11 portal107 v4.1.r689238 Tue, Oct 22 2024 16:10:51 -->
|
||
<span id="portal-csrf-token" style="display:none" data-token="CE8B5AF87C7FFCB1_0191SID"></span>
|
||
|
||
<script type="text/javascript" src="//static.pubmed.gov/portal/portal3rc.fcgi/4216699/js/3879255/4121861/3501987/4008961/3893018/3821238/4062932/4209313/4212053/4076480/3921943/3400083/3426610.js" snapshot="books"></script></body>
|
||
</html> |