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<meta name="robots" content="NOINDEX,NOFOLLOW,NOARCHIVE,NOIMAGEINDEX" /><meta name="citation_inbook_title" content="SNP FAQ Archive [Internet]" /><meta name="citation_title" content="Batch Submissions and Large Submissions to dbSNP" /><meta name="citation_publisher" content="National Center for Biotechnology Information (US)" /><meta name="citation_date" content="2010/06/15" /><meta name="citation_fulltext_html_url" content="https://www.ncbi.nlm.nih.gov/books/NBK573463/" /><link rel="schema.DC" href="http://purl.org/DC/elements/1.0/" /><meta name="DC.Title" content="Batch Submissions and Large Submissions to dbSNP" /><meta name="DC.Type" content="Text" /><meta name="DC.Publisher" content="National Center for Biotechnology Information (US)" /><meta name="DC.Date" content="2010/06/15" /><meta name="DC.Identifier" content="https://www.ncbi.nlm.nih.gov/books/NBK573463/" /><meta name="og:title" content="Batch Submissions and Large Submissions to dbSNP" /><meta name="og:type" content="book" /><meta name="og:url" content="https://www.ncbi.nlm.nih.gov/books/NBK573463/" /><meta name="og:site_name" content="NCBI Bookshelf" /><meta name="og:image" content="https://www.ncbi.nlm.nih.gov/corehtml/pmc/pmcgifs/bookshelf/thumbs/th-helpsnpfaq-lrg.png" /><meta name="twitter:card" content="summary" /><meta name="twitter:site" content="@ncbibooks" /><meta name="warning" content="This publication is provided for historical reference only and the information may be out of date." /><meta name="bk-non-canon-loc" content="/books/n/helpsnpfaq/Sbmt_Batch_Submissio/" /><link rel="canonical" href="https://www.ncbi.nlm.nih.gov/books/NBK573463/" /><link rel="stylesheet" href="/corehtml/pmc/css/figpopup.css" type="text/css" media="screen" /><link rel="stylesheet" href="/corehtml/pmc/css/bookshelf/2.26/css/books.min.css" type="text/css" /><link rel="stylesheet" href="/corehtml/pmc/css/bookshelf/2.26/css/books_print.min.css" type="text/css" /><style type="text/css">p a.figpopup{display:inline !important} .bk_tt {font-family: monospace} .first-line-outdent .bk_ref {display: inline} </style><script type="text/javascript" src="/corehtml/pmc/js/jquery.hoverIntent.min.js"> </script><script type="text/javascript" src="/corehtml/pmc/js/common.min.js?_=3.18"> </script><script type="text/javascript">window.name="mainwindow";</script><script type="text/javascript" src="/corehtml/pmc/js/bookshelf/2.26/book-toc.min.js"> </script><script type="text/javascript" src="/corehtml/pmc/js/bookshelf/2.26/books.min.js"> </script>
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<div class="pre-content"><div><div class="bk_prnt"><p class="small">NCBI Bookshelf. A service of the National Library of Medicine, National Institutes of Health.</p><p>SNP FAQ Archive [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2005-. </p></div><div class="messagearea bk_noprnt" style="margin-bottom:1.3846em "><ul class="messages"><li class="warn icon"><span class="icon">This publication is provided for historical reference only and the information may be out of date.</span></li></ul></div><div class="bk_prnt"><p style="color:red;"><strong>This publication is provided for historical reference only and the information may be out of date.</strong></p></div></div></div>
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<div class="main-content lit-style" itemscope="itemscope" itemtype="http://schema.org/CreativeWork"><div class="meta-content fm-sec"><h1 id="_NBK573463_"><span class="title" itemprop="name">Batch Submissions and Large Submissions to dbSNP</span></h1><p class="small">Created: <span itemprop="datePublished">June 6, 2005</span>; Last Update: <span itemprop="dateModified">June 15, 2010</span>.</p><p><em>Estimated reading time: 1 minute</em></p></div><div class="body-content whole_rhythm" itemprop="text"><ul class="simple-list"><li><p><a href="#Sbmt_Batch_Submissio.how_long_would_you">How long would you expect submission processing for a list of ~ 5000 SNPs to take? It seems to be taking a long time (>10 minutes).</a></p></li><li><p><a href="#Sbmt_Batch_Submissio.i_need_to_submit_so">I need to submit some SNPs located within pseudogenes (caused by a premature stop codon), as well as SNPs not located in pseudogenes. Can I submit them in the same batch?</a></p></li><li><p><a href="#Sbmt_Batch_Submissio.i_want_to_send_a_la">I want to send a large amount of data to dbSNP. Is there another submission channel besides email?</a></p></li><li><p><a href="#Sbmt_Batch_Submissio.i_want_to_submit_da">I want to submit data on several SNP assays. Do I have to submit the assays, SNPs, and the allele frequencies in one batch or in separate submissions?</a></p></li><li><p><a href="#Sbmt_Batch_Submissio.when_i_submit_a_sin">When I submit a single sequence that contains multiple SNPs, do I submit each SNP individually under the same batch number?</a></p></li></ul><div><h4 id="Sbmt_Batch_Submissio.how_long_would_you">How long would you expect submission processing for a list of ~ 5000 SNPs to take? It seems to be taking a long time (>10 minutes).</h4><blockquote><p>Submission processing shouldn't take more than 30 seconds. I just tested the system using 10,000 SNPs and it took less than 10 seconds. Make sure you have javacript turned on in your browser. Please contact dbSNP at snp-admin@ncbi.nlm.nih.gov if you're still having a problem with it, and we’ll try to find out where the problem is.(<b>8/22/06</b>)</p></blockquote></div><div><h4 id="Sbmt_Batch_Submissio.i_need_to_submit_so">I need to submit some SNPs located within pseudogenes (caused by a premature stop codon), as well as SNPs not located in pseudogenes. Can I submit them in the same batch?</h4><blockquote><p>Yes, you can assign batches based on your preference. <b>(12/14/05)</b></p></blockquote></div><div><h4 id="Sbmt_Batch_Submissio.i_want_to_send_a_la">I want to send a large amount of data to dbSNP. Is there another submission channel besides email?</h4><blockquote><p>Contact SNPdev at snp-admin@ncbi.nlm.nih.gov, and we'll set up an FTP account for you to upload the submission file to our site. Your account information will be sent to you once the account has been set up.</p></blockquote></div><div><h4 id="Sbmt_Batch_Submissio.i_want_to_submit_da">I want to submit data on several SNP assays. Do I have to submit the assays, SNPs, and the allele frequencies in one batch or in separate submissions?</h4><blockquote><p>You can submit the assays, SNPs, and the allele frequencies simultaneously. The submission only has to have one SNPASSAY header as long as the same assay method is used for all the SNPs.</p><p>All of the SNPs found in the assay should be below their corresponding SNPASSAY header.</p><p>To submit the allele frequencies, you can use your local SNP identifier during submission.</p><p>You can submit all of the SNPs and the allele frequencies as a single batch.</p></blockquote></div><div><h4 id="Sbmt_Batch_Submissio.when_i_submit_a_sin">When I submit a single sequence that contains multiple SNPs, do I submit each SNP individually under the same batch number?</h4><blockquote><p>Submit each SNP individually under the same batch number. You can submit the same flanking sequence for each SNP.</p><p>Example of two adjacent SNPs:</p><pre>tcccgttttc tgcgtggtgg tgtgggggga acttcctcag gcctctccgc agt[C/T][A/G]tgcctc<br />ctcccgtaca cagcaagatg cgtccctaaa ctcccggggg aattagact</pre><p>dbSNP submission format:</p><pre>SNP:TNFRSF5-000324A<br />ACCESSION:<a href="/nuccore/40288426" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=link&targettype=nuccore">AY504960</a><br />SAMPLESIZE:180<br />INDHMZYDET:YES<br />GENENAME:TNFRSF5<br />LOCUSID:958<br />LENGTH:511<br />5'_ASSAY:gccttcccgttttctgcgtggtggtgtggggggaacttcctcaggcctctccgcagt<br />OBSERVED:C/T<br />3'_ASSAY:atgcctcctcccgtacacagcaagatgcgtccctaaactcccgggggaattagact<br />||<br />SNP:TNFRSF5-000324B<br />ACCESSION:<a href="/nuccore/40288426" class="bk_tag" ref="pagearea=body&targetsite=entrez&targetcat=link&targettype=nuccore">AY504960</a><br />SAMPLESIZE:180<br />INDHMZYDET:YES<br />GENENAME:TNFRSF5<br />LOCUSID:958<br />LENGTH:511<br />5'_ASSAY:gccttcccgttttctgcgtggtggtgtggggggaacttcctcaggcctctccgcagtc<br />OBSERVED:A/G<br />3'_ASSAY:tgcctcctcccgtacacagcaagatgcgtccctaaactcccgggggaattagact</pre></blockquote></div><div id="bk_toc_contnr"></div></div></div>
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<div class="post-content"><div><div class="half_rhythm"><a href="/books/about/copyright/">Copyright Notice</a></div><div class="small"><span class="label">Bookshelf ID: NBK573463</span></div><div style="margin-top:2em" class="bk_noprnt"><a class="bk_cntns" href="/books/n/helpsnpfaq/">Contents</a><div class="pagination bk_noprnt"><a class="active page_link prev" href="/books/n/helpsnpfaq/Sbmt_Submitting_Info/" title="Previous page in this title">< Prev</a><a class="active page_link next" href="/books/n/helpsnpfaq/Sbmt_Submitting_SNPs/" title="Next page in this title">Next ></a></div></div></div></div>
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