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<div id="jr" data-jr-path="/corehtml/pmc/jatsreader/ptpmc_3.22/"><div class="jr-unsupported"><table class="modal"><tr><td><span class="attn inline-block"></span><br />Your browser does not support the NLM PubReader view.<br />Go to <a href="/pmc/about/pr-browsers/">this page</a> to see a list of supported browsers<br />or return to the <br /><a href="/books/NBK53593/?report=classic">regular view</a>.</td></tr></table></div><div id="jr-ui" class="hidden"><nav id="jr-head"><div class="flexh tb"><div id="jr-tb1"><a id="jr-links-sw" class="hidden" title="Links"><svg xmlns="http://www.w3.org/2000/svg" version="1.1" x="0px" y="0px" viewBox="0 0 70.6 85.3" style="enable-background:new 0 0 70.6 85.3;vertical-align:middle" xml:space="preserve" width="24" height="24">
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yet</button><a id="jr-fip-next" class="wsprkl btn" title="Jump to next match">▶</a></nav></nav></div><div id="jr-epub-interstitial" class="hidden"></div><div id="jr-content"><article data-type="main"><div class="main-content lit-style" itemscope="itemscope" itemtype="http://schema.org/CreativeWork"><div class="meta-content fm-sec"><div class="fm-sec"><h1 id="_NBK53593_"><span class="title" itemprop="name">Using Preferences</span></h1><p class="fm-aai"><a href="#_NBK53593_pubdet_">Publication Details</a></p><p><em>Estimated reading time: 11 minutes</em></p></div></div><div class="jig-ncbiinpagenav body-content whole_rhythm" data-jigconfig="allHeadingLevels: ['h2'],smoothScroll: false" itemprop="text"><p>My NCBI preferences and customization links can be found at the top right corner of the My NCBI homepage.</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image001.jpg" alt="Image preferences-Image001.jpg" /></div>
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</p><p>Users can customize the appearance of the My NCBI homepage display and select their preferences for: displaying the links menu, activating search term highlighting, saving shared settings, setting up and activating filters, and customizing the search results display.</p><p>Please write to <a href="mailto:dev@null" data-email="vog.hin.mln.ibcn@ofni" class="oemail">vog.hin.mln.ibcn@ofni</a> if you have any questions.</p><p>
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<b>Section Contents</b>
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</p><ul><li class="half_rhythm"><div>
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<a href="#preferences.Customizing_the_My_NCBI_Home">Customizing the My NCBI homepage</a>
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</div></li><li class="half_rhythm"><div>Account Settings</div><ul><li class="half_rhythm"><div>
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<a href="#preferences.Changing_your_Email_Address">Changing your E-mail Address</a>
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</div></li><li class="half_rhythm"><div>
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<a href="#preferences.Changing_your_Password">Changing your Password</a>
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</div></li><li class="half_rhythm"><div>
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<a href="#preferences.Changing_your_Security_Quest">Changing your Security Question</a>
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</div></li><li class="half_rhythm"><div>
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<a href="#preferences.Linked_Accounts">Linked Accounts</a>
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</div></li><li class="half_rhythm"><div>
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<a href="#preferences.Adding_and_Removing_Delegate">Adding or Removing Delegates</a>
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</div></li><li class="half_rhythm"><div>
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<a href="#preferences.Creating_an_API_Key">Creating an API Key</a>
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</div></li></ul></li><li class="half_rhythm"><div>Common Preferences</div><ul><li class="half_rhythm"><div>
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<a href="#preferences.Highlighting_Search_Terms">Highlighting Search Terms</a>
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</div></li><li class="half_rhythm"><div>
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<a href="#preferences.Shared_Settings">Shared Settings</a>
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</div></li></ul></li><li class="half_rhythm"><div>PubMed Preferences</div><ul><li class="half_rhythm"><div>
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<a href="#preferences.Setting_Up_PubMed_Filters">Setting up PubMed Filters</a>
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</div></li><li class="half_rhythm"><div>
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<a href="#preferences.Selecting_Outside_Tool">Selecting Outside Tool</a>
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</div></li><li class="half_rhythm"><div>
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<a href="#preferences.Author_Information_Display">Displaying Author Information</a>
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</div></li><li class="half_rhythm"><div>
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<a href="#preferences.Customizing_the_Search_Resul">Customizing the Search Results Display</a>
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</div></li></ul></li><li class="half_rhythm"><div>PMC Preferences</div><ul><li class="half_rhythm"><div>
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<a href="#preferences.Selecting_Article_View">Selecting Article View</a>
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</div></li></ul></li><li class="half_rhythm"><div>Gene Preferences</div><ul><li class="half_rhythm"><div>
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<a href="#preferences.Setting_up_Gene_Filters">Setting up Gene Filters</a>
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</div></li><li class="half_rhythm"><div>
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<a href="#preferences.Customizing_the_Search_Resul_1">Customizing the Search Results Display</a>
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</div></li></ul></li><li class="half_rhythm"><div>GTR Preferences</div><ul><li class="half_rhythm"><div>
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<a href="#preferences.Selecting_Preferred_Labs">Selecting Preferred Labs</a>
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</div></li></ul></li><li class="half_rhythm"><div>Nucleotide Preferences</div><ul><li class="half_rhythm"><div>
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<a href="#preferences.Setting_up_Nucleotide_Filter">Setting up Nucleotide Filters</a>
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</div></li><li class="half_rhythm"><div>
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<a href="#preferences.Customizing_the_Search_Resul_2">Customizing the Search Results Display</a>
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</div></li></ul></li><li class="half_rhythm"><div>Protein Preferences</div><ul><li class="half_rhythm"><div>
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<a href="#preferences.Setting_up_Protein_Filters">Setting up Protein Filters</a>
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</div></li><li class="half_rhythm"><div>
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<a href="#preferences.Customizing_the_Search_Resul_3">Customizing the Search Results Display</a>
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</div></li></ul></li><li class="half_rhythm"><div>GSS Preferences</div><ul><li class="half_rhythm"><div>
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<a href="#preferences.Customizing_the_Search_Resul_4">Customizing the Search Results Display</a>
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</div></li></ul></li><li class="half_rhythm"><div>EST Preferences</div><ul><li class="half_rhythm"><div>
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<a href="#preferences.Customizing_the_Search_Resul_5">Customizing the Search Results Display</a>
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</div></li></ul></li><li class="half_rhythm"><div>ClinVar Preferences</div><ul><li class="half_rhythm"><div>
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<a href="#preferences.Customizing_the_Search_Resul_6">Customizing the Search Results Display</a>
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</div></li></ul></li><li class="half_rhythm"><div>MedGen Preferences</div><ul><li class="half_rhythm"><div>
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<a href="#preferences.Customizing_the_Search_Resul_7">Customizing the Search Results Display</a>
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</div></li></ul></li><li class="half_rhythm"><div>Books Preferences</div><ul><li class="half_rhythm"><div>
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<a href="#preferences.Customizing_the_Search_Resul_8">Customizing the Search Results Display</a>
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</div></li></ul></li></ul><div id="preferences.Customizing_the_My_NCBI_Home"><h2 id="_preferences_Customizing_the_My_NCBI_Home_">Customizing the My NCBI Homepage</h2><p>The homepage display can be customized by dragging and dropping each function window to the top or bottom of the page. Each function window can also be minimized or removed from the homepage display. <a href="https://www.youtube.com/watch?v=fTlGVPXLXeE" class="img_link" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri"><span class="graphic"><img src="/books/NBK53593/bin/preferences-Image002.jpg" alt="Image preferences-Image002.jpg" /></span></a></p><p>Users may select or deselect any of the function windows from appearing in the My NCBI homepage. To deselect any function window, click on the “Customize this page” link and uncheck any of the functions that you do not want to see in your My NCBI homepage.</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image003.jpg" alt="Image preferences-Image003.jpg" /></div>
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</p></div><div id="preferences.Account_Settings"><h2 id="_preferences_Account_Settings_">Account Settings</h2><p>After signing in to your My NCBI account, click on your username on the NCBI header to access the Account Settings page.</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image004.jpg" alt="Image preferences-Image004.jpg" /></div>
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</p><div id="preferences.Changing_your_Email_Address"><h3>Changing your E-mail Address</h3><p>To change your e-mail address:</p><dl class="temp-labeled-list"><dl class="bkr_refwrap"><dt>1.</dt><dd><p class="no_top_margin">Click on your <span class="bk_pgobj">Username </span>to access the Account Settings page</p></dd></dl><dl class="bkr_refwrap"><dt>2.</dt><dd><p class="no_top_margin">Click the “Change” button next to the current e-mail address</p></dd></dl><dl class="bkr_refwrap"><dt>3.</dt><dd><p class="no_top_margin">Enter your account password</p></dd></dl><dl class="bkr_refwrap"><dt>4.</dt><dd><p class="no_top_margin">Enter an e-mail address</p></dd></dl><dl class="bkr_refwrap"><dt>5.</dt><dd><p class="no_top_margin">Click <span class="bk_pgobj">Save</span>.</p></dd></dl></dl><p>
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<b>Note:</b>
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</p><ul><li class="half_rhythm"><div>A confirmation e-mail message will be sent to the new e-mail address to activate automatic e-mail updates</div></li></ul></div><div id="preferences.Changing_your_Password"><h3>Changing your Password</h3><p>NCBI started the transition to use only federated account credentials for NCBI account login on June 1st, 2021. The deadline for transitioning all NCBI accounts to 3rd-party only login is June 2022. Please read the below FAQs and write to <a href="mailto:dev@null" data-email="vog.hin.mln.ibcn@ofni" class="oemail">vog.hin.mln.ibcn@ofni</a> if you have any questions.</p><p>
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<a href="https://ncbiinsights.ncbi.nlm.nih.gov/ncbi-login-retirement-faqs" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">https://ncbiinsights.ncbi.nlm.nih.gov/ncbi-login-retirement-faqs</a>
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</p><p>Journal publishers who use My NCBI login for PMDM should write to <a href="mailto:dev@null" data-email="vog.hin.mln.ibcn@rehsilbup" class="oemail">vog.hin.mln.ibcn@rehsilbup</a> for feedback on login or access to PMDM.</p><p>To change your password:</p><dl class="temp-labeled-list"><dl class="bkr_refwrap"><dt>1.</dt><dd><p class="no_top_margin">Click on your <span class="bk_pgobj">Username </span>to access the Account Settings page</p></dd></dl><dl class="bkr_refwrap"><dt>2.</dt><dd><p class="no_top_margin">Click the “Change” button</p></dd></dl><dl class="bkr_refwrap"><dt>3.</dt><dd><p class="no_top_margin">Enter your current account password</p></dd></dl><dl class="bkr_refwrap"><dt>4.</dt><dd><p class="no_top_margin">Enter your new account password and repeat the new account password</p></dd></dl><dl class="bkr_refwrap"><dt>5.</dt><dd><p class="no_top_margin">Click <span class="bk_pgobj">Save</span>.</p></dd></dl></dl></div><div id="preferences.Changing_your_Security_Quest"><h3>Changing your Security Question</h3><p>NCBI started the transition to use only federated account credentials for NCBI account login on June 1st, 2021. The deadline for transitioning all NCBI accounts to 3rd-party only login is June 2022. Please read the below FAQs and write to <a href="mailto:dev@null" data-email="vog.hin.mln.ibcn@ofni" class="oemail">vog.hin.mln.ibcn@ofni</a> if you have any questions.</p><p>
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<a href="https://ncbiinsights.ncbi.nlm.nih.gov/ncbi-login-retirement-faqs" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">https://ncbiinsights.ncbi.nlm.nih.gov/ncbi-login-retirement-faqs</a>
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</p><p>Journal publishers who use My NCBI login for PMDM should write to <a href="mailto:dev@null" data-email="vog.hin.mln.ibcn@rehsilbup" class="oemail">vog.hin.mln.ibcn@rehsilbup</a> for feedback on login or access to PMDM.</p><p>To change your security question:</p><dl class="temp-labeled-list"><dl class="bkr_refwrap"><dt>1.</dt><dd><p class="no_top_margin">Click on your <span class="bk_pgobj">Username </span>to access the Account Settings page</p></dd></dl><dl class="bkr_refwrap"><dt>2.</dt><dd><p class="no_top_margin">Click the “Change” button next to the security question</p></dd></dl><dl class="bkr_refwrap"><dt>3.</dt><dd><p class="no_top_margin">Enter your account password</p></dd></dl><dl class="bkr_refwrap"><dt>4.</dt><dd><p class="no_top_margin">Enter a security question and answer</p></dd></dl><dl class="bkr_refwrap"><dt>5.</dt><dd><p class="no_top_margin">Click <span class="bk_pgobj">Save</span>.</p></dd></dl></dl></div><div id="preferences.Linked_Accounts"><h3>Linked Accounts</h3><p>Go to “Linked Accounts” to view or remove partner organization accounts that are currently linked to your My NCBI account. You may also search for a different partner account to link to your My NCBI account.</p><p>To view or delete linked accounts:</p><dl class="temp-labeled-list"><dl class="bkr_refwrap"><dt>1.</dt><dd><p class="no_top_margin">Click on your <span class="bk_pgobj">Username </span>to access the Account Settings page</p></dd></dl><dl class="bkr_refwrap"><dt>2.</dt><dd><p class="no_top_margin">Click the “Change” button next to Linked Accounts</p></dd></dl><dl class="bkr_refwrap"><dt>3.</dt><dd><p class="no_top_margin">To remove a linked account, click on the red X.</p></dd></dl><dl class="bkr_refwrap"><dt>4.</dt><dd><p class="no_top_margin">Click <span class="bk_pgobj">Save</span>.</p></dd></dl></dl><p>To <span class="bk_pgobj">link</span> your My NCBI account to a partner account: repeat steps 1 and 2 and search for a partner account. If available, click on the partner organization link displayed. Then, log in at the partner organization page with your partner organization credentials.</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image005.jpg" alt="Image preferences-Image005.jpg" /></div>
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</p></div><div id="preferences.Adding_and_Removing_Delegate"><h3>Adding and Removing Delegates</h3><p>Delegates are persons who are granted access by NCBI account owners to view and manage their <a href="/books/NBK53595/" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">My Bibliography</a> collection and/or their <a href="/books/NBK154494/" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">SciENcv</a> profile. Delegate invitations are initiated by NCBI account owners.</p><p>To <span class="bk_pgobj">add a delegate</span> to manage your My Bibliography and/or SciENcv data:</p><dl class="temp-labeled-list"><dl class="bkr_refwrap"><dt>1.</dt><dd><p class="no_top_margin">Log in to your NCBI account, and click on your username (top right corner of page) to access the Account Settings page</p></dd></dl><dl class="bkr_refwrap"><dt>2.</dt><dd><p class="no_top_margin">Go to the <span class="bk_pgobj">“Delegates”</span> section and click “Add a Delegate” link</p></dd></dl><dl class="bkr_refwrap"><dt>3.</dt><dd><p class="no_top_margin">Enter the delegate’s e-mail address, and click <span class="bk_pgobj">OK</span></p></dd></dl><dl class="bkr_refwrap"><dt>4.</dt><dd><p class="no_top_margin">Your delegate will receive an e-mail with a URL that leads to an access confirmation page. For further information, see <a href="/books/NBK53595/#mybibliography.Confirming_a_My_Bibliogra" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">confirming a My Bibliography connection</a> for delegates.</p></dd></dl></dl><p>The <span class="bk_pgobj">Delegates</span> section of the Account Settings page displays a list of all the delegates granted access to either your My Bibliography collection or your SciENCV professional profile, or both. In the Delegates section you may add or remove delegates as well as <span class="bk_pgobj">modify the access</span> granted by checking or unchecking the boxes under the My Bibliography or SciENcv columns. Additionally, delegates can be <span class="bk_pgobj">removed</span> by clicking on the <span class="bk_pgobj">red X.</span></p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image006.jpg" alt="Image preferences-Image006.jpg" /></div>
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</p></div><div id="preferences.Creating_an_API_Key"><h3>Creating an API Key</h3><p>Web services developers and other users of NCBI E-Utilities can create an API key in Account Settings. An API key is required for Web service requests set up to make more than three requests per second to E-Utilities.</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image007.jpg" alt="Image preferences-Image007.jpg" /></div>
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</p><p>Use the API key generated for your account in your request URLs with the api_key parameter and you will be able to make up to ten requests per second. For example: esummary.fcgi?db=pubmed&id=28933509&api_key= 21abcd97ef62XXXXXXXXXX</p><p>Users who need to make more than ten requests per second should contact: eutilities@ncbi.nlm.nih.gov.</p><p>To create an API key using your NCBI account:</p><dl class="temp-labeled-list"><dl class="bkr_refwrap"><dt>1.</dt><dd><p class="no_top_margin">Click on your <span class="bk_pgobj">Username </span>to access the Account Settings page</p></dd></dl><dl class="bkr_refwrap"><dt>2.</dt><dd><p class="no_top_margin">Go to the “API Key Management” section and click the button “Create an API key”</p></dd></dl><dl class="bkr_refwrap"><dt>3.</dt><dd><p class="no_top_margin">An API Key will be generated for you.</p></dd></dl><dl class="bkr_refwrap"><dt>4.</dt><dd><p class="no_top_margin">Click the “Replace” button to generate a new API key. Note that the previously issued API key will be inactivated.</p></dd></dl></dl></div></div><div id="preferences.Common_Preferences"><h2 id="_preferences_Common_Preferences_">Common Preferences</h2><div id="preferences.Highlighting_Search_Terms"><h3>Highlighting Search Terms</h3><p>You can choose to have your search terms highlighted in retrieved database records. By default, this option is off, but you can pick one of the ten colors available in the Highlighting section of the NCBI Site Preferences to have your search terms highlighted. Highlighting is only active when you are signed into My NCBI.</p><p>Terms other than the one(s) you have used in your query are also highlighted at times. For example, if you search PubMed using the term ‘cancer’, you will also find citations with the term ‘neoplasm’ highlighted. That is because the NCBI search engine has a dictionary of synonymous terms, such as ‘cancer’ and ‘neoplasm’ that are equally considered when you search a database using one of them.</p><p>In some cases, you will retrieve PubMed citations that have no highlighting in the abstracts, which means that neither the search term nor a synonymous word was found in the abstracts. However, terms that appear as MeSH (Medical Subject Headings) terms or Substances on a record will be highlighted in the supplemental information section of the citation.</p></div><div id="preferences.Shared_Settings"><h3>Shared Settings</h3><p>This is an option that institutions can utilize in order to have their users’ access NCBI databases with the preferences they select. The Shared Settings option allows users to set up Filters, <a href="#preferences.Highlighting_Search_Terms">Highlight</a> color for search terms, and <a href="#preferences.Selecting_Outside_Tool">Outside Tool</a> all at once instead of having to set these options separately.</p><p>To create shared settings:</p><dl class="temp-labeled-list"><dl class="bkr_refwrap"><dt>1.</dt><dd><p class="no_top_margin">Click the <span class="bk_pgobj">Shared Settings</span> link.</p></dd></dl><dl class="bkr_refwrap"><dt>2.</dt><dd><p class="no_top_margin">Select which settings to share by clicking the appropriate box.</p></dd></dl><dl class="bkr_refwrap"><dt>3.</dt><dd><p class="no_top_margin">Save.</p></dd></dl><dl class="bkr_refwrap"><dt>4.</dt><dd><p class="no_top_margin">You can then create a URL, https://pubmed.ncbi.nlm.nih.gov?myncbishare=<b>username,</b> where the <b>username</b> is the shared My NCBI account name. This URL can be used to create a link or button for PubMed on a library’s Web site.</p></dd></dl></dl><p>
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<b>Note:</b>
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</p><ul><li class="half_rhythm"><div>Settings activated using a My NCBI shared account URL will timeout after eight hours of inactivity</div></li><li class="half_rhythm"><div>A user accessing PubMed using shared settings is not signed in to My NCBI and consequently My NCBI will not display a username</div></li><li class="half_rhythm"><div>If a user signs in to My NCBI, the settings for their personal account will take precedent over the shared account settings</div></li></ul></div></div><div id="preferences.PubMed_Preferences"><h2 id="_preferences_PubMed_Preferences_">PubMed Preferences</h2><div id="preferences.Setting_Up_PubMed_Filters"><h3>Setting Up PubMed Filters</h3><p>NCBI databases search results can be narrowed down to smaller groups of data using filters. You can select your preferred PubMed filters to be active every time you run a search. For example, filters can be used to group results into reviews, clinical trials, or citations with free full text links, among other choices. You may also create your own custom filters. There is a limit of 15 filters for the PubMed database. For a detailed explanation on how to set up filters, see <a href="/books/n/helpmyncbi/workingwithfilters/?report=reader">Working with Filters</a>.</p></div><div id="preferences.Selecting_Outside_Tool"><h3>Selecting Outside Tool</h3><p>Outside Tool allows libraries to add a link from PubMed citations to a link resolver available at their institution. These links are displayed as icons in the PubMed Abstract display (see image below). In My NCBI preferences for PubMed, users can enable up to five libraries’ Outside tool icons to display in PubMed.</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image008.jpg" alt="Image preferences-Image008.jpg" /></div>
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</p><p>When you click on the Outside tool icon, you are directed to the available services for that citation offered by the sponsoring library. These services might include access to electronic full text or information on local print journal holdings.</p><p>To turn on an Outside Tool, click the <span class="bk_pgobj">Outside Tool</span> link under PubMed preferences. Select up to five institutions from the available list and the selected libraries’ icons will display in the Abstract format. For more information, see <a href="https://www.ncbi.nlm.nih.gov/books/NBK3803/#related.Outside_Tool" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">Outside Tool</a>.</p></div><div id="preferences.Author_Information_Display"><h3>Author Information Display</h3><p>Author Affiliations appear in the PubMed abstract display below the author names, and it is normally closed by default:</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image009.jpg" alt="Image preferences-Image009.jpg" /></div>
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</p><p>To change the default to make the author information available in the abstract display:</p><dl class="temp-labeled-list"><dl class="bkr_refwrap"><dt>1.</dt><dd><p class="no_top_margin">Click the link Author Information under PubMed preferences</p></dd></dl><dl class="bkr_refwrap"><dt>2.</dt><dd><p class="no_top_margin">Check Open</p></dd></dl></dl><p>
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<span class="bk_pgobj">Save</span>
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</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image010.jpg" alt="Image preferences-Image010.jpg" /></div>
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</p><p>The author affiliation information will be available when signed in to My NCBI.</p></div><div id="preferences.Customizing_the_Search_Resul"><h3>Customizing the Search Results Display</h3><p>The PubMed default for displaying search results is the Summary display format. To change the search results to display in the Abstract format, log in to My NCBI and click “<span class="bk_pgobj">NCBI Site Preferences</span>” and then “Result Display Settings” under PubMed Preferences. In the resulting page select the Abstract format. Afterwards, your search results will display in the Abstract format while logged in to My NCBI.</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image011.jpg" alt="Image preferences-Image011.jpg" /></div>
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</p></div></div><div id="preferences.PMC_Preferences"><h2 id="_preferences_PMC_Preferences_">PMC Preferences</h2><div id="preferences.Selecting_Article_View"><h3>Selecting Article View</h3><p>The PubMed Central (PMC) full text database default article view format is HTML, however, users can select the PMC PubReader as a default in My NCBI. Sign in to My NCBI and click “<span class="bk_pgobj">NCBI Site Preferences</span>” and then “Article View” under PMC Preferences. In the resulting window, select PubReader or Classic (HTML) and click save. Information on PubReader can be found <a href="https://www.ncbi.nlm.nih.gov/pmc/about/pubreader/" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">here</a>.</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image012.jpg" alt="Image preferences-Image012.jpg" /></div>
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</p></div></div><div id="preferences.Gene_Preferences"><h2 id="_preferences_Gene_Preferences_">Gene Preferences</h2><div id="preferences.Setting_up_Gene_Filters"><h3>Setting up Gene Filters</h3><p>NCBI databases search results can be narrowed down to smaller groups of data using filters. You can select your preferred Gene filters to be active every time you run a search. You may also create your own custom filters.</p><p>There is a limit of 5 filters for the Gene database. For a detailed explanation on how to set up filters in My NCBI, see <a href="/books/n/helpmyncbi/workingwithfilters/?report=reader">Working with Filters</a>. To see an explanation of the different types of filters available for the Gene database see <a href="/books/NBK3841/#EntrezGene.Finding_subsets_of_your_resul" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">Gene Help-filters</a>.</p></div><div id="preferences.Customizing_the_Search_Resul_1"><h3>Customizing the Search Results Display</h3><p>The Gene database default format for displaying search results is Full report, 20 records per page, and sorted by Relevance.</p><p>The full report display includes the following sections: Summary, Genomic Context, Genomic regions/transcripts/products, Expression, Bibliography, Phenotypes, Variation, HIV-1 protein interactions, Interactions, Pathways, Alleles, General Gene Information, General Protein Information, NCBI Reference Sequences (RefSeq), Related Sequences, and Additional Links.</p><p>To customize the search results display, log into My NCBI and click “<span class="bk_pgobj">NCBI Site Preferences</span>” and then click “Result Display Settings” under Gene Preferences. In the resulting page select either the Full report, Gene Table, or Gene RIF format. You can specify the sections you want included in the Full report by checking the box next to the section name. For information on the different types of display formats available for the Gene database see <a href="/books/NBK3841/#EntrezGene.How_Data_Are_Displayed_Displa" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">Gene Help-display/settings</a>.</p><p>To customize the search results display for number of records per page and sorting order, select the number of records to be displayed per page (5, 10, 20, 50, 100, or 200) and the sort order (Relevance, Gene Weight, Name. or Chromosome).</p><p>For information on Display Settings in the Gene Database, see <a href="/books/NBK3841/#EntrezGene.How_Data_Are_Displayed_Displa" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">Gene Help</a>.</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image013.jpg" alt="Image preferences-Image013.jpg" /></div>
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</p></div></div><div id="preferences.GTR_Preferences"><h2 id="_preferences_GTR_Preferences_">GTR Preferences</h2><div id="preferences.Selecting_Preferred_Labs"><h3>Selecting Preferred Labs</h3><p>You can select your preferred Laboratories for the Genetic Testing Registry (GTR) database using My NCBI, which will help limit your search results to the tests offered by the laboratories selected.</p><p>In NCBI Site Preferences:</p><dl class="temp-labeled-list"><dl class="bkr_refwrap"><dt>1.</dt><dd><p class="no_top_margin">Click the link “Preferred Labs” under GTR preferences.</p></dd></dl><dl class="bkr_refwrap"><dt>2.</dt><dd><p class="no_top_margin">Click “GTR Website.” Select the Labs tab. Enter a laboratory name in the search box.</p></dd></dl><dl class="bkr_refwrap"><dt>3.</dt><dd><p class="no_top_margin">Click the button “Add to preferred labs.” GTR video tutorials <a href="https://www.youtube.com/playlist?list=PL1C4A2AFF811F6F0B" class="img_link" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri"><span class="graphic"><img src="/books/NBK53593/bin/preferences-Image002.jpg" alt="Image preferences-Image002.jpg" /></span></a></p></dd></dl></dl><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image014.jpg" alt="Image preferences-Image014.jpg" /></div>
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</p></div></div><div id="preferences.Nucleotide_Preferences"><h2 id="_preferences_Nucleotide_Preferences_">Nucleotide Preferences</h2><div id="preferences.Setting_up_Nucleotide_Filter"><h3>Setting up Nucleotide Filters</h3><p>You can select your preferred Nucleotide filters to be active every time you run a search. You may also create your own custom filters. There is a limit of 5 filters for the Nucleotide database. For a detailed explanation on how to set up filters in My NCBI, see <a href="/books/n/helpmyncbi/workingwithfilters/?report=reader">Working with Filters</a>.</p></div><div id="preferences.Customizing_the_Search_Resul_2"><h3>Customizing the Search Results Display</h3><p>The Nucleotide database default format for displaying search results is GenBank. To customize the search results display format, log in to My NCBI and click “<span class="bk_pgobj">NCBI Site Preferences</span>” and then click “Result Display Settings” under Nucleotide Preferences. In the resulting page select either the GenBank, FASTA, or Graphics format.</p><p>The number of records per page and sorting order can also be customized in My NCBI. For information on the different types of display formats available for the Nucleotide database see <a href="/books/NBK49541/#NucProtFAQ.Section_C_Display_of_Records" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">Nucleotide FAQ</a></p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image015.jpg" alt="Image preferences-Image015.jpg" /></div>
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</p></div></div><div id="preferences.Protein_Preferences"><h2 id="_preferences_Protein_Preferences_">Protein Preferences</h2><div id="preferences.Setting_up_Protein_Filters"><h3>Setting up Protein Filters</h3><p>You can select your preferred Protein filters to be active every time you run a search. You may also create your own custom filters. There is a limit of 5 filters for the Protein database. For a detailed explanation on how to set up filters in My NCBI, see <a href="/books/n/helpmyncbi/workingwithfilters/?report=reader">Working with Filters</a>.</p></div><div id="preferences.Customizing_the_Search_Resul_3"><h3>Customizing the Search Results Display</h3><p>The Protein database default format for displaying search results is GenPept. To customize the search results display format, log in to My NCBI and click “<span class="bk_pgobj">NCBI Site Preferences</span>” and then click “Result Display Settings” under Protein Preferences. In the resulting page select either the GenPept, FASTA, or Graphics format.</p><p>The number of records per page and sorting order can also be customized in My NCBI. Select the number of records to be displayed per page (5, 10, 20, 50, 100, or 200) and the sort order (Accession, Date Modified, Date Release, Organism Name, or Taxonomy ID).</p><p>For information on the different types of display formats available for the Nucleotide database see <a href="https://www.ncbi.nlm.nih.gov/books/NBK49541/" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">Protein FAQs</a></p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image016.jpg" alt="Image preferences-Image016.jpg" /></div>
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</p></div></div><div id="preferences.GSS_Preferences"><h2 id="_preferences_GSS_Preferences_">GSS Preferences</h2><div id="preferences.Customizing_the_Search_Resul_4"><h3>Customizing the Search Results Display</h3><p>The GSS (Genome Survey Sequence) database default format for displaying search results is GSS. To customize the records display format, log into My NCBI and click “<span class="bk_pgobj">NCBI Site Preferences</span>” and then click “Record Display Format” under GSS Preferences. In the resulting window select, either GSS, GenBank or FASTA format.</p><p>The GSS database default settings for displaying search results are: 20 records per page and sorted by Default Order. Default order follows the same display order as GenBank: last into the database first displayed. To change the number of records to display per page and sort order, select the number of records to be displayed per page (5, 10, 20, 50, 100, or 200) and to change the sort order (Accession, Date Modified, Date Release, Organism Name, or Taxonomy ID).</p><p>For information on the GSS database see <a href="/books/NBK44864/" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">Entrez Sequences Help</a>.</p></div></div><div id="preferences.EST_Preferences"><h2 id="_preferences_EST_Preferences_">EST Preferences</h2><div id="preferences.Customizing_the_Search_Resul_5"><h3>Customizing the Search Results Display</h3><p>The EST (Expressed Sequence Tag) database default format for displaying search results is EST. To customize the records display format, log in to My NCBI and click “<span class="bk_pgobj">NCBI Site Preferences</span>” and then click “Record Display Format” under EST Preferences. In the resulting window select, either EST, GenBank or FASTA format.</p><p>The EST database default settings for displaying search results are: 20 records per page and sorted by Default Order. Default order follows the same display order as GenBank: last into the database first displayed. To change the number of records to display per page, select the number of records to be displayed per page (5, 10, 20, 50, 100, or 200) and to change the sort order (Accession, Date Modified, Date Release, Organism Name, or Taxonomy ID).</p><p>For information on the EST database see <a href="/books/NBK44864/" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">Entrez Sequences Help</a></p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image017.jpg" alt="Image preferences-Image017.jpg" /></div>
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</p></div></div><div id="preferences.ClinVar_Preferences"><h2 id="_preferences_ClinVar_Preferences_">ClinVar Preferences</h2><div id="preferences.Customizing_the_Search_Resul_6"><h3>Customizing the Search Results Display</h3><p>The ClinVar database default format for displaying results is tabular view. To customize the records display format, log in to My NCBI and click “<span class="bk_pgobj">NCBI Site Preferences</span>” and then click “Record Display Format” under ClinVar Preferences. In the resulting window select, either Tabular View or Summary format.</p><p>The ClinVar database default settings for displaying search results are: 20 records per page and sorted by Recently Added. To change the number of records to display per page, select the number of records to be displayed per page (5, 10, 20, 50, 100, or 200) and to change the sort order (Recently Added, Gene, Position or Title).</p><p>For information on the ClinVar database see <a href="https://www.ncbi.nlm.nih.gov/clinvar/docs/faq/" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">ClinVar FAQs</a>.</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image018.jpg" alt="Image preferences-Image018.jpg" /></div>
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</p></div></div><div id="preferences.MedGen_Preferences"><h2 id="_preferences_MedGen_Preferences_">MedGen Preferences</h2><div id="preferences.Customizing_the_Search_Resul_7"><h3>Customizing the Search Results Display</h3><p>The MedGen database default settings for displaying search results are: 20 records per page and sorted by Recently Added. To change the number of records to display per page and the search results sorting order, log in to My NCBI and click “<span class="bk_pgobj">NCBI Site Preferences</span>” and then select “Record Display Format” under MedGen Preferences. In the resulting window select the number of records to be displayed per page (5, 10, 20, 50, 100, or 200) and select the sort order for search results (Recently Added, Title, Concept ID or Semantic Type).</p><p>For information on the MedGen database see <a href="https://www.ncbi.nlm.nih.gov/medgen/docs/help/" ref="pagearea=body&targetsite=external&targetcat=link&targettype=uri">MedGen Help</a>.</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image019.jpg" alt="Image preferences-Image019.jpg" /></div>
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</p></div></div><div id="preferences.Books_Preferences"><h2 id="_preferences_Books_Preferences_">Books Preferences</h2><div id="preferences.Customizing_the_Search_Resul_8"><h3>Customizing the Search Results Display</h3><p>The Books database default settings for displaying search results are: 20 records per page and sorted by Relevance. To change the number of records to display per page and the search results sorting order, log in to My NCBI and click “<span class="bk_pgobj">NCBI Site Preferences</span>” and then select “Record Display Format” under Books Preferences. In the resulting window select the number of records to be displayed per page (5, 10, 20, 50, 100, or 200) and select a sort order for search results (Relevance, Title or Publication Date).</p><p>
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<div class="graphic"><img src="/books/NBK53593/bin/preferences-Image020.jpg" alt="Image preferences-Image020.jpg" /></div>
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</p></div></div><div id="bk_toc_contnr"></div></div></div><div class="fm-sec"><h2 id="_NBK53593_pubdet_">Publication Details</h2><h3>Publication History</h3><p class="small">Created: <span itemprop="datePublished">December 13, 2010</span>; Last Revision: <span itemprop="dateModified">June 28, 2021</span>.</p><h3>Copyright</h3><div><div class="half_rhythm"><a href="/books/about/copyright/">Copyright Notice</a></div></div><h3>Publisher</h3><p><a href="http://www.ncbi.nlm.nih.gov/" ref="pagearea=page-banner&targetsite=external&targetcat=link&targettype=publisher">National Center for Biotechnology Information (US)</a>, Bethesda (MD)</p><h3>NLM Citation</h3><p>My NCBI Help [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2005-. Using Preferences. 2010 Dec 13 [Updated 2021 Jun 28].<span class="bk_cite_avail"></span></p></div><div class="small-screen-prev"><a href="/books/n/helpmyncbi/workingwithfilters/?report=reader"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 100 100" preserveAspectRatio="none"><path d="M75,30 c-80,60 -80,0 0,60 c-30,-60 -30,0 0,-60"></path><text x="20" y="28" textLength="60" style="font-size:25px">Prev</text></svg></a></div><div class="small-screen-next"><a href="/books/n/helpmyncbi/recentactivity/?report=reader"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 100 100" preserveAspectRatio="none"><path d="M25,30c80,60 80,0 0,60 c30,-60 30,0 0,-60"></path><text x="20" y="28" textLength="60" style="font-size:25px">Next</text></svg></a></div></article></div><div id="jr-scripts"><script src="/corehtml/pmc/jatsreader/ptpmc_3.22/js/libs.min.js"> </script><script src="/corehtml/pmc/jatsreader/ptpmc_3.22/js/jr.min.js"> </script></div></div>
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