47 lines
No EOL
2.3 KiB
HTML
47 lines
No EOL
2.3 KiB
HTML
<!DOCTYPE HTML>
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<title>VariationException</title>
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<h3>VariationException</h3><pre>Defined in file <a href="variation.asn.html">variation.asn</a>
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C++ class: <a href="../doxyhtml/classCVariationException.html">CVariationException</a>
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VariationException ::= SEQUENCE
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{
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code INTEGER {
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hgvs-parsing (1), --invalid hgvs expression
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hgvs-exon-boundary (2), --anchor position in an intronic HGVS expression is not at an exon boundary
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inconsistent-consequence (3), --consequence protein variation attached to precursor variation's consequence
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--could not be derived from it.
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inconsistent-asserted-allele (4), --asserted allele is inconsistent with the reference
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no-mapping (5), --could not remap
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partial-mapping (6), --mapped location is shorter than the query
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split-mapping (7), --a source interval maps to multiple non-abutting intervals.
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mismatches-in-mapping (8), --the source sequence differs from sequence at mapped loc
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inconsistent-asserted-moltype (9), --asserted mol-type is inconsistent with seq-id (e.g. NM_12345.6:g.)
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bioseq-state (10),
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ambiguous-sequence (11),
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ref-same-as-variant (12), --reference sequence at the location is same as variant sequence in the variation
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seqfetch-too-long (13), --can't fetch sequence because location is longer than specified threshold
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seqfetch-intronic (14), --can't fetch sequence for an intronic (anchor+offset)-based location
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seqfetch-invalid (15), --can't fetch sequence because location is invalid (e.g. extends past the end)
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no-mapping-from-newer-version (16), --have mapping from older version of a sequence, but not from newer
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source-location-overhang (17), --The source location overhangs the alignment by at least 5kb (VAR-1307)
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hgvs-exon-boundary-induced (18) --Similar to (2), except induced by 5'/3'-terminal or an exon extension (VAR-1309)
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} OPTIONAL,
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message VisibleString
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} </pre>
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