47 lines
No EOL
1.7 KiB
HTML
47 lines
No EOL
1.7 KiB
HTML
<!DOCTYPE HTML>
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<title>Seq-align</title>
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<h3>Seq-align</h3><pre>Defined in file <a href="seqalign.asn.html">seqalign.asn</a>
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C++ class: <a href="../doxyhtml/classCSeq__align.html">CSeq_align</a>
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Seq-align ::= SEQUENCE {
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type ENUMERATED {
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not-set (0) ,
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global (1) ,
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diags (2) , -- unbroken, but not ordered, diagonals
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partial (3) , -- mapping pieces together
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disc (4) , -- discontinuous alignment
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other (255) } ,
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dim INTEGER OPTIONAL , -- dimensionality
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score SET OF <a href="Score.html">Score</a> OPTIONAL , -- for whole alignment
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segs CHOICE { -- alignment data
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dendiag SEQUENCE OF <a href="Dense-diag.html">Dense-diag</a> ,
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denseg <a href="Dense-seg.html">Dense-seg</a> ,
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std SEQUENCE OF <a href="Std-seg.html">Std-seg</a> ,
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packed <a href="Packed-seg.html">Packed-seg</a> ,
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disc <a href="Seq-align-set.html">Seq-align-set</a>,
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spliced <a href="Spliced-seg.html">Spliced-seg</a>,
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sparse <a href="Sparse-seg.html">Sparse-seg</a>
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} ,
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-- regions of sequence over which align
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-- was computed
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bounds SET OF <a href="Seq-loc.html">Seq-loc</a> OPTIONAL,
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-- alignment id
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id SEQUENCE OF <a href="Object-id.html">Object-id</a> OPTIONAL,
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--extra info
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ext SEQUENCE OF <a href="User-object.html">User-object</a> OPTIONAL
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}</pre>
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