52 lines
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2.5 KiB
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52 lines
No EOL
2.5 KiB
HTML
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<h3>Bioseq-set</h3><pre>Defined in file <a href="seqset.asn.html">seqset.asn</a>
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C++ class: <a href="../doxyhtml/classCBioseq__set.html">CBioseq_set</a>
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Bioseq-set ::= SEQUENCE { -- just a collection
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id <a href="Object-id.html">Object-id</a> OPTIONAL ,
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coll <a href="Dbtag.html">Dbtag</a> OPTIONAL , -- to identify a collection
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level INTEGER OPTIONAL , -- nesting level
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class ENUMERATED {
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not-set (0) ,
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nuc-prot (1) , -- nuc acid and coded proteins
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segset (2) , -- segmented sequence + parts
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conset (3) , -- constructed sequence + parts
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parts (4) , -- parts for 2 or 3
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gibb (5) , -- geninfo backbone
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gi (6) , -- geninfo
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genbank (7) , -- converted genbank
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pir (8) , -- converted pir
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pub-set (9) , -- all the seqs from a single publication
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equiv (10) , -- a set of equivalent maps or seqs
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swissprot (11) , -- converted SWISSPROT
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pdb-entry (12) , -- a complete PDB entry
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mut-set (13) , -- set of mutations
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pop-set (14) , -- population study
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phy-set (15) , -- phylogenetic study
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eco-set (16) , -- ecological sample study
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gen-prod-set (17) , -- genomic products, chrom+mRNA+protein
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wgs-set (18) , -- whole genome shotgun project
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named-annot (19) , -- named annotation set
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named-annot-prod (20) , -- with instantiated mRNA+protein
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read-set (21) , -- set from a single read
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paired-end-reads (22) , -- paired sequences within a read-set
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small-genome-set (23) , -- viral segments or mitochondrial minicircles
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other (255) } DEFAULT not-set ,
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release VisibleString OPTIONAL ,
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date <a href="Date.html">Date</a> OPTIONAL ,
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descr <a href="Seq-descr.html">Seq-descr</a> OPTIONAL ,
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seq-set SEQUENCE OF <a href="Seq-entry.html">Seq-entry</a> ,
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annot SET OF <a href="Seq-annot.html">Seq-annot</a> OPTIONAL }</pre>
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