136 lines
58 KiB
HTML
136 lines
58 KiB
HTML
<!DOCTYPE html>
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/*# sourceURL=/css/ampshared.css*/</style><meta property="og:locale" content="en_US"><meta property="og:type" content="article"><meta property="og:title" content="New RefSeq Annotations Now Available! - NCBI Insights"><meta property="og:description" content="In February and March, the NCBI Eukaryotic Genome Annotation Pipeline released forty-six new annotations in RefSeq! New Annotations Aedes albopictus (Asian tiger mosquito) Anolis carolinensis (green anole) Armigeres subalbatus (mosquito) Bacillus rossius redtenbacheri (walking stick) Bolinopsis microptera (comb jelly) Bombyx mori (domestic silkworm) Bubalus kerabau (carabao) Candoia aspera (snake) Cavia porcellus (domestic guinea pig) Chroicocephalus ridibundus (black-headed … Continue reading New RefSeq Annotations Now Available! →"><meta property="og:url" content="https://ncbiinsights.ncbi.nlm.nih.gov/2024/04/16/new-refseq-annotations-5/"><meta property="og:site_name" content="NCBI Insights"><meta property="article:publisher" content="https://www.facebook.com/ncbi.nlm"><meta property="article:published_time" content="2024-04-16T13:59:13+00:00"><meta property="article:modified_time" content="2024-04-22T14:02:09+00:00"><meta property="og:image" content="https://ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2024/04/iStock-2033315005-e1712931161476.jpg"><meta property="og:image:width" 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<article class="amp-wp-article">
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<h1 class="amp-wp-title">New RefSeq Annotations Now Available!</h1>
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<time datetime="2024-04-16T13:59:13+00:00">
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11 months ago </time>
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</header>
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<figure class="amp-wp-article-featured-image wp-caption">
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<amp-img width="1024" height="683" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2024/04/iStock-2033315005-e1712931161476.jpg?fit=1024%2C683&ssl=1" class="attachment-large size-large wp-post-image amp-wp-enforced-sizes i-amphtml-layout-intrinsic i-amphtml-layout-size-defined" alt="Western Lowland Gorilla with greenery in the background" data-hero-candidate="" layout="intrinsic" data-hero i-amphtml-ssr i-amphtml-layout="intrinsic"><i-amphtml-sizer slot="i-amphtml-svc" class="i-amphtml-sizer"><img alt="" aria-hidden="true" class="i-amphtml-intrinsic-sizer" role="presentation" src="data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjY4MyIgd2lkdGg9IjEwMjQiIHhtbG5zPSJodHRwOi8vd3d3LnczLm9yZy8yMDAwL3N2ZyIgdmVyc2lvbj0iMS4xIi8+"></i-amphtml-sizer><img class="i-amphtml-fill-content i-amphtml-replaced-content" decoding="async" loading="lazy" alt="Western Lowland Gorilla with greenery in the background" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2024/04/iStock-2033315005-e1712931161476.jpg?fit=1024%2C683&ssl=1"></amp-img> <p class="wp-caption-text">
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The Western Lowland Gorilla (Gorilla gorilla gorilla), one of the two subspecies of the Western Gorilla. </p>
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</figure>
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<div class="amp-wp-article-content">
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<p>In February and March, the <a class="external-link" title="Follow link" href="https://www.ncbi.nlm.nih.gov/genome/annotation_euk/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=refseq-update-20240416" target="_blank" rel="nofollow noopener">NCBI Eukaryotic Genome Annotation Pipeline</a> released <a href="https://www.ncbi.nlm.nih.gov/datasets/genome/?accession=GCF_000001635.27%2CGCF_001625215.2%2CGCF_015220805.1%2CGCF_018983055.1%2CGCF_021018805.1%2CGCF_023053635.1%2CGCF_024139115.2%2CGCF_026151205.1%2CGCF_027409185.1%2CGCF_028390025.1%2CGCF_028858775.2%2CGCF_028878055.2%2CGCF_028885625.2%2CGCF_028885655.2%2CGCF_029281585.2%2CGCF_029289425.2%2CGCF_029407905.1%2CGCF_030014385.1%2CGCF_030269925.1%2CGCF_030705265.1%2CGCF_032062105.1%2CGCF_032445375.1%2CGCF_034190915.1%2CGCF_034315485.1%2CGCF_034640455.1%2CGCF_034702125.1%2CGCF_035046485.1%2CGCF_035149785.1%2CGCF_035594125.1%2CGCF_035594765.1%2CGCF_035770615.1%2CGCF_036172545.1%2CGCF_036172605.1%2CGCF_036321145.1%2CGCF_036323735.1%2CGCF_036324505.1%2CGCF_036588685.1%2CGCF_036711695.1%2CGCF_910591565.1%2CGCF_947568885.1%2CGCF_948474715.1%2CGCF_963556715.1%2CGCF_963678635.1%2CGCF_963855985.1%2CGCF_963921235.1%2CGCF_963924245.1&utm_source=ncbi_insights&utm_medium=referral&utm_campaign=refseq-update-20240416">forty-six new annotations</a> in <a class="external-link" title="Follow link" href="https://www.ncbi.nlm.nih.gov/refseq/about/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=refseq-update-20240416" target="_blank" rel="nofollow noopener">RefSeq</a>!</p>
|
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<h5>New Annotations</h5>
|
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<ul>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Aedes albopictus (Asian tiger mosquito)</span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Anolis carolinensis (green anole)</span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Armigeres subalbatus (mosquito)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Bacillus rossius redtenbacheri (walking stick)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Bolinopsis microptera (comb jelly)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Bombyx mori (domestic silkworm)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Bubalus kerabau (carabao)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Candoia aspera (snake)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Cavia porcellus (domestic guinea pig) </span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Chroicocephalus ridibundus (black-headed gull)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Culicoides brevitarsis (fly)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Cydia amplana (moth)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Cydia fagiglandana (moth)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Cydia splendana (moth)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Cydia strobilella (moth)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Cynocephalus volans (Philippine flying lemur)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Daucus carota subsp. sativus (carrot)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Diachasmimorpha longicaudata (wasp)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Eleginops maclovinus (Patagonian blennie)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Elgaria multicarinata webbii (lizard)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Engraulis encrasicolus (European anchovy)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Gorilla gorilla gorilla (western lowland gorilla) <em>(pictured)</em></span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Helicoverpa armigera (cotton bollworm)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Melospiza melodia melodia (song sparrow)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Mobula hypostoma (lesser devil ray)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Mus musculus (house mouse)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Mytilus trossulus (common blue mussel)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Ostrinia nubilalis (European corn borer)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Pan paniscus (pygmy chimpanzee)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Pan troglodytes (chimpanzee)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Pelmatolapia mariae (spotted tilapia)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Pelobates fuscus (common spadefoot toad)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Penaeus indicus (crustacean)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Pezoporus occidentalis (night parrot)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Pogoniulus pusillus (Red-fronted tinkerbird)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Pongo abelii (Sumatran orangutan)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Pongo pygmaeus (Bornean orangutan)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Prinia subflava (tawny-flanked prinia)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Pseudophryne corroboree (corroboree frog)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Rattus norvegicus (Norway rat)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Saccostrea cucullata (small rock oyster)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Scylla paramamosain (green mud crab)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Symphalangus syndactylus (siamang)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Symsagittifera roscoffensis (acoel flatworm)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Trichomycterus rosablanca (bony fish)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Zophobas morio (beetle)</span></li>
|
||
</ul>
|
||
<p>View the full list of annotated eukaryotes available in the <a class="external-link" title="Follow link" href="https://www.ncbi.nlm.nih.gov/genome/gdv/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=refseq-update-20240416" target="_blank" rel="nofollow noopener">Genome Data Viewer (GDV) genome browser</a>. You can download genome sequence and metadata using the <a class="external-link" title="Follow link" href="https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/download-genome/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=refseq-update-20240416" target="_blank" rel="nofollow noopener">NCBI Datasets command line tool</a>.</p>
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<h5>Stay up to date</h5>
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<p>RefSeq is part of the <a href="https://www.ncbi.nlm.nih.gov/comparative-genomics-resource/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=refseq-update-20240416">NIH Comparative Genomics Resource (CGR)</a>. <span data-contrast="none">CGR facilitates reliable comparative genomics analyses for all eukaryotic organisms through an NCBI Toolkit and community collaboration. </span><span data-ccp-props='{"134233117":true,"134233118":true,"201341983":0,"335559739":160,"335559740":240}'> </span></p>
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<p>CGR also makes it easier to navigate between a variety of NCBI data and tools. To find out what’s in the RefSeq annotation pipeline, check out the <a href="https://www.ncbi.nlm.nih.gov/datasets/genome/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=refseq-update-20240416">new table</a> in NCBI Datasets with information on the latest eukaryotic RefSeq annotations.</p>
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