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<h4 class="margin-bottom-0">Unified Medical Language System<small><sup>®</sup></small> (UMLS<small><sup>®</sup></small>)</h4>
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<div class="h1">UMLS® Problems (Bugs) for Previous Versions</div>
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</div>
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There are no known problems for the current release. Please send any issues or concerns to
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<!-- Releases with bugs-->
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<h2>Releases with bugs</h2>
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<thead>
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<tr>
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<th scope="col">Version
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</th>
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<th scope="col">Issue
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</th>
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</tr>
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</thead>
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<tbody>
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<tr>
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<th scope="row">
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2021AB
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</th>
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<td>
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||
<p>
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||
<strong>Title: </strong>
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Issues with Version 2.71 of LNC-DE-DE
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</p>
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<p><strong>Problem: </strong>
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||
The 2021AB version of the UMLS Metathesaurus includes version 2.71 of LNC-DE-DE
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(LOINC Linguistic Variant -
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German, Germany). LOINC found issues with this version and reverted to version 2.70.
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For the most current
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||
versions of LOINC Linguistic Variants, see:
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||
https://loinc.org/downloads/accessory-files/#loinc-linguistic-variants.
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||
</p>
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<p><strong>Solution: </strong>This error will be corrected in the 2022AA Release.
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||
</p>
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||
<p><strong>Date Posted: </strong>
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||
November 1, 2021
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||
</p>
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</td>
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</tr>
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<tr>
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<th scope="row">
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2021AA
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</th>
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<td>
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||
<p>
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<strong>Title: </strong>
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MRREL.RRF SCTSPA error
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</p>
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<p>
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<p><strong>Problem: </strong>22 rows in MRREL have the wrong relation label (RELA). The issue
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affects
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SAB=SCTSPA
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rows where
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RELA=has_count_of_active_ingredient and RELA=count_of_active_ingredient_of. For
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SAB=SCTSPA, these relation
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labels should be swapped. Rows with RELA=has_count_of_active_ingredient should have
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RELA=count_of_active_ingredient_of, and rows with RELA=count_of_active_ingredient_of
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should have
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RELA=has_count_of_active_ingredient.
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</p>
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<p><strong>Solution: </strong>This error will be corrected in the 2021AB Release.
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</p>
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<p>
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<p><strong>Date Posted: </strong>
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May 3, 2021</p>
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</td>
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</tr>
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<tr>
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<th scope="row">
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2017AB
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</th>
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<td>
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<p><strong>Title: </strong>
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MRCONSO.RRF error
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</p>
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||
<p><strong>Problem: </strong>MRCONSO.RRF contains an incorrect row listing SAB=SRC and
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TTY=PT. PT is not a
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valid term type for
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SAB=SRC.
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||
<br />
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||
The incorrect row is:
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||
C4318590|ENG|P|L14292498|PF|S17373750|Y|A28572588||||SRC|PT|NOCODE|PICRASMA EXCELSA
|
||
(ingredient)|0|N||
|
||
</p>
|
||
<p><strong>Solution: </strong>This error will be corrected in the 2018AA Release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>November 6, 2017
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2013AA
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
MetamorphoSys Validation Error</p>
|
||
<p><strong>Problem: </strong>There is a known problem with MetamorphoSys that prevents it from
|
||
validating files.
|
||
</p>
|
||
<p><strong>Solution: </strong>NLM is working to resolve this error.
|
||
</p>
|
||
|
||
<p><strong>Date Posted: </strong>May 8, 2013
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
|
||
|
||
<tr><!-- start several 2012AA bugs-->
|
||
<th scope="row">
|
||
2012AA
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
MRSAB includes incorrect version date for LNC_NEUROQOL
|
||
</p>
|
||
<p><strong>Problem: </strong>The MRSAB file lists LNC_NEUROQOL with a 2001 version date for its
|
||
VSAB.
|
||
</p>
|
||
<p><strong>Solution: </strong>The correct version date is 2010. This error will be corrected in
|
||
the 2012AB
|
||
Release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>May 7, 2012
|
||
</p>
|
||
|
||
|
||
|
||
<div>
|
||
<hr>
|
||
|
||
<p><strong>Title: </strong>US Extension to SNOMED CT Error
|
||
</p>
|
||
<p><strong>Problem: </strong>
|
||
Several rows misspell “education”.
|
||
</p>
|
||
<p><strong>Solution: </strong>This error will be corrected in the October version of the US
|
||
Extension and the
|
||
2012AB UMLS Release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>May 7, 2012
|
||
</p>
|
||
</div>
|
||
|
||
|
||
<div>
|
||
<hr>
|
||
|
||
<p><strong>Title: </strong>CPT Spanish Atoms Not Released
|
||
</p>
|
||
<p><strong>Problem: </strong>
|
||
Approximately 4,000 CPT Spanish Preferred Term (PT) atoms were erroneously not
|
||
released in MRCONSO.RRF
|
||
(MRCON and MRSO for ORF).
|
||
</p>
|
||
<p><strong>Solution: </strong>This error will be corrected in the 2012AB Release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>May 7, 2012
|
||
</p>
|
||
</div>
|
||
|
||
|
||
<div>
|
||
<hr>
|
||
|
||
<p><strong>Title: </strong>ICD10CM_2012 to ICD9CM_2012 Reimbursement Mapping Errors
|
||
<p><strong>Problem: </strong></p>
|
||
<div>
|
||
<ul class="usa-list">
|
||
<li>MAPSETCUI C3264360 in MRMAP and MRSMAP (ICD10CM_2012 to ICD9CM_2012
|
||
Reimbursement Mapping) has 669 rows
|
||
with false positive mappings. The value of the TOEXPR field for these rows is
|
||
‘NODX’, which
|
||
is intended to mean the absence of a map. These rows were erroneously assigned a
|
||
rel/rela combination of
|
||
RQ/mapped_to in MRMAP, whereas they should have the rel ‘XR’, which
|
||
means ‘map to
|
||
nothing’.
|
||
</li>
|
||
<li>MAPSETCUI C3264360 has 85 TOEXPR values that have an erroneous trailing decimal
|
||
period. Example:
|
||
C3264360|ICD10CM|||AT146354901||M21.41||M21.41|SDUI|||RQ|mapped_to|15206||
|
||
<strong>
|
||
734.
|
||
</strong>
|
||
|SDUI|||||||||
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
<p><strong>Solution: </strong>These errors will be corrected in the 2012AB Release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>May 7, 2012
|
||
</p>
|
||
</td>
|
||
</tr><!-- end several 2012AA bugs-->
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2011AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
2011AB Database Load Script Error
|
||
</strong> </p>
|
||
<p><strong>Problem:
|
||
</strong>
|
||
Term type list (TTYL) field length is not sufficient.
|
||
</p>
|
||
<p><strong>Solution: </strong>Edit the corresponding table creation script (e.g.
|
||
oracle_tables.sql or
|
||
mysql_tables.sql) and change the
|
||
length of the TTYL field to 400 instead of 300. For Oracle users, also edit the
|
||
MRSAB.ctl file and set TTYL
|
||
field to char(400) instead of char(300).
|
||
</p>
|
||
<p><strong>Date Posted: </strong>December 1, 2011
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2011AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
MeSH Data Error
|
||
</p>
|
||
<p><strong>Problem: </strong>An invalid MeSH tree number,
|
||
<strong>
|
||
D12.776.157.057.000
|
||
</strong>
|
||
, for MeSH ID D058927 appears in the MRSAT file (both ORF and RRF formats). Its CUI
|
||
is C2936832.
|
||
</p>
|
||
<p><strong>Solution: </strong>The correct tree number is
|
||
<strong>
|
||
D12.776.157.057.001.
|
||
</strong>
|
||
This error will be corrected in the 2012AA Release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>November 16, 2011
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2011AA
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Encoding error causes display problems for MedlinePlus definitions
|
||
</p>
|
||
<p><strong>Problem: </strong>Characters in MedlinePlus definitions are not displayed correctly
|
||
in
|
||
MRDEF.RRF.
|
||
</p>
|
||
<p><strong>Solution: </strong>This error will be corrected in the 2011AB Release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>June 16, 2011
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2011AA
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
SPECIALIST Lexicon & Lexical Tools installation progress bar reads beyond
|
||
100%
|
||
</p>
|
||
<p><strong>Problem: </strong>When installing the SPECIALIST Lexicon & Lexical Tools on
|
||
various platforms, the
|
||
progress bar reads
|
||
beyond 100%. This is a display bug that does not affect output or subset completion.
|
||
</p>
|
||
<p><strong>Solution: </strong>This error will be corrected in the 2011AB Release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>May 5, 2011
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2011AA
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Precedence Filter Bug and Missing Rows in MRRANK.RRF
|
||
</p>
|
||
<p><strong>Problem: </strong>When copying an old configuration (.properties) file from a
|
||
previous
|
||
MetamorphoSys
|
||
release to re-use in the
|
||
current release, the Precedence Filter may not pick up new term types added between
|
||
the current release and
|
||
the last release. This leads to missing rows in MRRANK.RRF.
|
||
</p>
|
||
<p><strong>Solution: </strong>This error will be corrected in the 2011AB Release. The workaround
|
||
is to point
|
||
‘default_subset_config_uri’ in your configuration file to
|
||
‘%MMSYS_HOME%\config\2011AA\user.a.prop’.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>May 5, 2011
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2010AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Subset creation progress bar reads beyond 100%
|
||
</p>
|
||
<p><strong>Problem: </strong>When creating a subset on various platforms, the progress bar reads
|
||
beyond 100%
|
||
(into the millions). This is
|
||
a display bug that does not affect output or subset completion.
|
||
</p>
|
||
<p><strong>Solution: </strong>This error will be corrected in the 2011AA Release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>November 22, 2010
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2009AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
OMIM Data Errors
|
||
</p>
|
||
<p><strong>Problem: </strong>
|
||
<ul class="usa-list">
|
||
<li>Two HT terms were misspelled in the file received from the source. The terms
|
||
GENITOURINIARY and NEPLASIA
|
||
were placed under the RHT, adding two false axes to the hierarchy. Both of these
|
||
terms are also present
|
||
in their correctly spelled forms, GENITOURINARY and NEOPLASIA.
|
||
</li>
|
||
<li>The OMIM term “Behavioral/psychiatric manifestations” (UMLS CUI
|
||
C1854373) has two erroneous
|
||
variant terms, “Psychiatric/behavioral manifestations” and
|
||
“Behavioral/psychiatric
|
||
Manifestations”.
|
||
</li>
|
||
</ul>
|
||
</p>
|
||
<p><strong>Solution: </strong>
|
||
<p>The corrected terms will be present in the next version of OMIM in the
|
||
Metathesaurus.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>November 3, 2009
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2009AA
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
LNC215 to CPT2005 Mappings Bug
|
||
</p>
|
||
<p>This bug affects the following Metathesaurus files: MRCONSO.RRF, MRSAT.RRF,
|
||
MRMAP.RRF, MRRANK.RRF
|
||
<p><strong>Problem: </strong>
|
||
MRCONSO.RRF contains Mapset metadata CUIs that describe mappings in the UMLS. These
|
||
CUIs are all assigned
|
||
the term type (TTY) 'XM'. The CUI 'C1704201' contains the term 'LNC215 to CPT2005
|
||
Mappings' which is the
|
||
only term in this CUI. In 2009AA, this term was erroneously assigned an NLM 'MTHU'
|
||
code that was shared by
|
||
an term with a higher ranking term type (MRRANK.RRF). Due to the error, all of the
|
||
rows in MRMAP.RRF that
|
||
contain the data for the 'LNC215 to CPT2005 Mappings' are attached to the wrong CUI
|
||
('C2599619' rather than
|
||
'C1704201'). All of the attributes associated with this map in MRSAT.RRF are also
|
||
attached to AUI
|
||
'A16416485', which belongs to CUI 'C2599619'
|
||
</p>
|
||
<strong>Solution: </strong>
|
||
If you are a user who is interested in using the LNC215 to CPT2005 mapping from
|
||
MRMAP.RRF, please use the
|
||
2008AB release, because the actual content for the map does not change from release
|
||
to release. NLM will
|
||
correct the error for the 2009AB UMLS release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>May 22, 2009
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2008AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
SQL Load Script produces errors related to ' \|' character sequence
|
||
</p>
|
||
<p>The following applies to users attempting to load the 2008AB RRF data into a MySQL
|
||
database using the
|
||
MetamorphoSys-generated MySQL load scripts.
|
||
<p><strong>Problem: </strong>
|
||
<p>Due a '\|' character sequence in the 2008AB data, the following MySQL error message
|
||
is displayed while
|
||
loading RRF data into a database:
|
||
<em>
|
||
Warning (Code 1264): Out of range value adjusted for column 'SRL.'
|
||
</em>
|
||
</p>
|
||
<strong>Solution: </strong>
|
||
|
||
<ol class="usa-list">
|
||
<li>Open up the mysql_tables.sql file in your MetamorphoSys output directory.
|
||
</li>
|
||
<li>Change the following line from:
|
||
<ul class="usa-list">
|
||
<li><em>
|
||
load data local infile 'MRCONSO.RRF' into table MRCONSO fields
|
||
terminated by '|' lines
|
||
terminated by '\n'
|
||
</em>
|
||
|
||
to the following:
|
||
</li>
|
||
<li><em>
|
||
load data local infile 'MRCONSO.RRF' into table MRCONSO fields
|
||
terminated by '|' ESCAPED BY
|
||
'' lines terminated by '\n'
|
||
</em>
|
||
</li>
|
||
</ul>
|
||
</li>
|
||
<li>Save and close the file, then re-run the script.
|
||
</li>
|
||
</ol>
|
||
<p><strong>Date Posted: </strong>December 16, 2008
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2008AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
MetaMap NLP View label missing from Content View Restrictor Window
|
||
</p>
|
||
<p><strong>Problem: </strong> On the Restrict Searches and Views Option, Content View Restrictor
|
||
screen, the name
|
||
of the third content
|
||
view (MetaMap NLP View) is missing.
|
||
</p>
|
||
<p><strong>Solution: </strong>This error will be corrected in the 2009AA release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>November 17, 2008
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2008AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Advanced Suppressibility Options Error
|
||
</p>
|
||
<p><strong>Problem: </strong> When using Advanced Suppressibility Options to remove suppressible
|
||
term types from a
|
||
customized
|
||
Metathesaurus subset, MetamorphoSys may not have removed all of the appropriate
|
||
rows/data from the
|
||
customized Metathesaurus MRHIER.RRF file.
|
||
</p>
|
||
<p><strong>Solution: </strong>Log in to the
|
||
<a class="usa-link" href="http://umlsks.nlm.nih.gov">
|
||
UMLSKS
|
||
</a>
|
||
and download the updated 2008AB UMLS Release files. Note: The Build Date of the
|
||
correct version of
|
||
MetamorphoSys is 2008_11_20_06_34_04 (located in Help --> About MetamorphoSys, in
|
||
the Welcome to
|
||
MetamorphoSys window).
|
||
</p>
|
||
<p><strong>Date Posted: </strong>November 24, 2008
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2007AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Validation Error when running off DVD
|
||
</p>
|
||
<p><strong>Problem: </strong>Users who have a DVD read/write drive will receive this error when
|
||
attempting to
|
||
validate the UMLS 2007AB
|
||
DVD.
|
||
</p>
|
||
<p><img alt="error message image" height="215" src="../../../images/2007AB_notify.jpg"
|
||
width="380" />
|
||
</p>
|
||
<p><strong>Solution: </strong>Until the user clicks "OK" the installation process can not go
|
||
forward. Clicking
|
||
"OK" will allow the
|
||
validation to complete by writing the file to another location.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>July 2, 2007
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2007AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Non-ASCII UTF-8 dash characters in 5 RxNorm, MTHSPL CODES not removed by
|
||
MetamorphoSys Output
|
||
Option</p>
|
||
<p><strong>Problem: </strong>Who is affected? Users who
|
||
<br>
|
||
(1) include RxNorm or MTHSPL data in their customized Metathesaurus subsets,
|
||
and who also
|
||
<br />
|
||
(2) use the Output Option in MetamorphoSys to exclude non-UTF-8 characters
|
||
from their subset
|
||
</br>
|
||
</p>
|
||
<p>MetamorphoSys fails to remove the following non-ASCII UTF-8 dash characters in the
|
||
CODE field in the
|
||
following 5 rows in MRSAT (2007AB):
|
||
<br />
|
||
|
||
<br />
|
||
C0716197|L6401119|S7339522|A11769224|AUI|0025–1961|AT69824745||NDC|MTHSPL|0025-1961-30|N||
|
||
<br />
|
||
C0716197|L6401119|S7339522|A11769224|AUI|0025–1961|AT69829041||SPL_SET_ID|MTHSPL|0B0BA593-FE54-456C-A3D7-651C
|
||
50036E3E|N||
|
||
<br />
|
||
C0716197|L6401119|S7339522|A11769224|AUI|0025–1961|AT69831407||RXCUI|RXNORM|687204|N||
|
||
<br />
|
||
C0716197|L6401119|S7339522|A11769224|AUI|0025–1961|AT69851217||DM_SPL_ID|MTHSPL|2746|N||
|
||
<br />
|
||
C0716197|L6401119|S7339522|A11769224|AUI|0025–1961|AT69853512||RXAUI|RXNORM|2621866|N||
|
||
</p>
|
||
<p>It fails to remove the non-ASCII UTF-8 dash in in the CODE field of one MRCONSO row:
|
||
</p>
|
||
<p>C0716197|ENG|S|L6401119|PF|S7339522|Y|A11769224||||MTHSPL|DP|0025–1961|Metronidazole
|
||
750 MILLIGRAM In
|
||
1 TABLET ORAL TABLET, FILM COATED, EXTENDED RELEASE [Flagyl ER]|0|N||
|
||
</p>
|
||
<p>The dash character in these rows is not an ASCII dash, but rather the UTF-8
|
||
dash:
|
||
<br />
|
||
<strong>
|
||
0x2013|U+2013|EN DASH|General Punctuation|1
|
||
</strong>
|
||
</p>
|
||
|
||
<p><strong>Solution: </strong>The Unicode character U+2013 is represented in UTF-8 as a sequence
|
||
of the
|
||
following 3 bytes (in octal):
|
||
<br />
|
||
\342, \200 and \223.
|
||
</p>
|
||
<p>Use the following perl script to make the change in the appropriate file:
|
||
<br />
|
||
perl -ne '{s/\342\200\223/-/g;print}' MRCONSO.RRF
|
||
<br />
|
||
or
|
||
<br />
|
||
perl -ne '{s/\342\200\223/-/g;print}' MRSAT.RRF
|
||
</p>
|
||
<p>These errors will be corrected in the 2007AC release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>July 2, 2007
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
|
||
<tr><!-- start several 2006AA bugs-->
|
||
<th scope="row">
|
||
2007AA
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Bad LOINC Relationship data in early release
|
||
<p><strong>Problem: </strong>Relationship data was incorrect in an early edition of the 2007AA
|
||
release. Users who
|
||
downloaded the release
|
||
prior to the official announcement will find incorrect LOINC mapped-to relationships
|
||
in the file MRREL.
|
||
</p>
|
||
<p><strong>Solution: </strong>
|
||
The information has been corrected in the official 2007AA release. Users should
|
||
download these files which
|
||
were made available on 1/29/07.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>January 30, 2007
|
||
</p>
|
||
</div>
|
||
|
||
<div>
|
||
<hr>
|
||
<br />
|
||
<p><strong>Title: </strong>Oracle Load Script produces errors related to Japanese language sources
|
||
<p><strong>Problem: </strong>Oracle users receive errors when trying to load the file RXW_JPN.RRF.
|
||
</p>
|
||
<p><strong>Solution: </strong>
|
||
The log file will report a series of errors like the one below:
|
||
</p>
|
||
<blockquote>
|
||
<p>Record 6171: Rejected - Error on table MRXW_JPN, column WD.
|
||
<br />
|
||
Field in data file exceeds maximum length
|
||
</p>
|
||
</blockquote>
|
||
<p>The error occurs because Oracle interprets the length of the WD column of the
|
||
MRXW_JPN table in terms of
|
||
BYTE semantics, instead of CHAR semantics. To force SQL*Loader to handle this
|
||
properly, the
|
||
MRXW_JPN.ctl SQL*Loader control file can be edited to include this line:
|
||
</p>
|
||
<p>characterset UTF8 length semantics char
|
||
</p>
|
||
<p>Thus, the complete MRXW_JPN.ctl file would be as follows:
|
||
</p>
|
||
<blockquote>
|
||
<p>options (direct=true)
|
||
<br />
|
||
load data
|
||
<br />
|
||
<strong>
|
||
characterset UTF8 length semantics char
|
||
</strong>
|
||
<br />
|
||
infile 'MRXW_JPN.RRF' "str X'7c0a'"
|
||
<br />
|
||
badfile 'MRXW_JPN.bad'
|
||
<br />
|
||
discardfile 'MRXW_JPN.dsc'
|
||
<br />
|
||
truncate
|
||
<br />
|
||
into table MRXW_JPN
|
||
<br />
|
||
fields terminated by '|'
|
||
<br />
|
||
trailing nullcols
|
||
<br />
|
||
(LAT char(3),
|
||
<br />
|
||
WD char(100),
|
||
<br />
|
||
CUI char(8),
|
||
<br />
|
||
LUI char(8),
|
||
<br />
|
||
SUI char(8)
|
||
<br />
|
||
)
|
||
</p>
|
||
</blockquote>
|
||
<p>With this change, the populate_oracle_db.csh script should run to completion without
|
||
any errors.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>January 30, 2007
|
||
</p>
|
||
</div>
|
||
|
||
<div>
|
||
<hr>
|
||
<br />
|
||
<p><strong>Title: </strong>Oracle Load Script produces errors related to character fields
|
||
<p><strong>Problem: </strong>Oracle users receive errors when trying to load the file MRSAT.
|
||
</p>
|
||
<p><strong>Solution: </strong>
|
||
Set "Truncate long fields to 3990 characters" to avoid errors in loading MRSAT rows
|
||
into Oracle. "Truncate
|
||
long fields..." appears on the "Output Options" tab, under "Maximum Field Length".
|
||
This problem will be
|
||
fixed by changing the default field length in the 2007AB Release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>January 15, 2007
|
||
</p>
|
||
</div>
|
||
|
||
<div>
|
||
<hr>
|
||
<br />
|
||
<p><strong>Title: </strong>MRHIER and MRSAB don't load properly in Oracle databases
|
||
<p><strong>Problem: </strong>Oracle users receive errors when trying to load the files MRSAB & MRHIER.
|
||
</p>
|
||
<p><strong>Solution: </strong>If you have already created a subset, edit the file "oracle_tables.sql" or
|
||
"mysql_tables.sql" so that the
|
||
TTYL field has a length of 200 (instead of 100) and the PAUI field has a VARCHAR (or
|
||
in Oracle VARCHAR2)
|
||
data type with length 9 (instead of CHAR(8)). If loading Oracle scripts, also edit
|
||
the SQL*Loader control
|
||
files "MRSAB.ctl" and "MRHIER.ctl" to accordingly set the lengths of the TTYL and
|
||
PAUI fields.
|
||
</p>
|
||
<p>Prior to creating a subset:
|
||
</p>
|
||
<p>Edit the MMSYS/config/mrpluscolsfiles.dat file. Change the lines
|
||
</p>
|
||
<p>TTYL|MRCOLS|varchar(100)|Term type list for a source||||06-DEC-06|
|
||
<br />
|
||
PAUI|MRCOLS|char(8)|Unique identifier for parent atom||||06-DEC-06|
|
||
</p>
|
||
<p>To this:
|
||
</p>
|
||
<p>TTYL|MRCOLS|varchar(200)|Term type list for a source||||06-DEC-06|
|
||
<br />
|
||
PAUI|MRCOLS|varchar(9)|Unique identifier for parent atom||||06-DEC-06|
|
||
</p>
|
||
<p>This problem will be fixed in the 2007AB Release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>January 15, 2007
|
||
</p>
|
||
</div>
|
||
|
||
<div>
|
||
<hr>
|
||
<br />
|
||
<p><strong>Title: </strong>Macintosh directory names with spaces
|
||
<p><strong>Problem: </strong>On Macintosh OS X, the name of the install directory and its parents can not
|
||
include
|
||
spaces; shell scripts
|
||
will fail to find the current directory name, and cause this error message to
|
||
appear:
|
||
</p>
|
||
<p>cd: MMSYS: No such file or directory
|
||
</p>
|
||
<p><strong>Solution: </strong>
|
||
Install the UMLS release files in an install directory with no spaces in its name or
|
||
the names of its
|
||
parents.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>January 15, 2007
|
||
</td>
|
||
</tr><!--end several 2006AA bugs-->
|
||
|
||
|
||
<tr>
|
||
|
||
<th scope="row">
|
||
2006AC
|
||
</strong>
|
||
,
|
||
<strong>
|
||
2006AD
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
MetamorphoSys Content View Filter Tab
|
||
</p>
|
||
<p><strong>Problem: </strong>
|
||
<ol class="usa-list">
|
||
<li>Enabling the Content View Filter creates a blank tab. The Natural
|
||
Language Processing Content
|
||
View Filter is not displayed and cannot be selected.
|
||
</li>
|
||
<li> Users are unable to navigate away from the blank tab. (Temporary and immediate
|
||
Solution: Disable the Content View Filter.)
|
||
</li>
|
||
</ol>
|
||
</p>
|
||
<p><strong>Solution: </strong>The error exists in the files MMSYS/config/mmsys.a.prop and
|
||
MMSYS/config/mmsys.b.prop.
|
||
</p>
|
||
<p>Add the lines below to the both of both files:
|
||
</p>
|
||
<p>gov.nih.nlm.mms.filters.ContentViewFilter.name_2=MetaMap NLP View
|
||
<br />
|
||
gov.nih.nlm.mms.filters.ContentViewFilter.description_2=It represents the strict
|
||
model of data used by
|
||
MetaMap.
|
||
<br />
|
||
gov.nih.nlm.mms.filters.ContentViewFilter.code_2=256
|
||
</p>
|
||
<p>Adding these lines will correct the error and allow users to
|
||
enable a Content View Filter that
|
||
correctly displays the Natural Language Processing filter.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>November 3, 2006
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2006AC
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Advanced Suppressibility Options -->Remove Suppressible Term Types Option does
|
||
not remove Term Types
|
||
|
||
<p><strong>Problem: </strong>Users who create an ORF subset and select one or all of the following
|
||
options:
|
||
Remove Source Term Type
|
||
Suppressible Data, Remove Editor Assigned Suppressible Data, or Remove Obsolete
|
||
Data, will find the line
|
||
"Suppressible terms were included in the subset." at the bottom of their MMSYS.log
|
||
file.
|
||
</p>
|
||
<p><strong>Solution: </strong>The error exists in the production of the log file, not in the data files.
|
||
Examination of the data files
|
||
will show that suppressible terms were not included in the subset, in relation to
|
||
the options the user
|
||
checked. (For example, if Remove Obsolete Data was checked only obsolete terms will
|
||
be removed.) The error
|
||
in the log file will be corrected for the 2006AD release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>July 14, 2006
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2006AC
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
In the RRF Browser, Find command does not highlight terms
|
||
|
||
<p><strong>Problem: </strong>On Mac, Solaris, and Linux platforms: when using the find command, found
|
||
terms are
|
||
not highlighted until the
|
||
user moves (scrolls up or down) within the window.
|
||
</p>
|
||
<p><strong>Solution: </strong>The error will be corrected for the 2006AD release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>July 14, 2006
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2006AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Java Issues After Installing J2SE 5.0 Release 4 Update
|
||
</p>
|
||
<p><strong>Problem: </strong>The software update for Java 2 Platform Standard Edition (J2SE) 5.0 Release
|
||
4 for
|
||
Mac OS X v10.4.5 will
|
||
change the default version of Java virtual machine from Java 1.4.2 to Java 5.0. This
|
||
may cause problems with
|
||
MetamorphoSys.
|
||
</p>
|
||
<p><strong>Solution: </strong>Reset the default Java virtual machine. Instructions are available from
|
||
Apple at
|
||
http://docs.info.apple.com/article.html?artnum=303526. The 2006AC release of the
|
||
UMLS will call the correct
|
||
JRE, regardless of the default settings.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>5/08/06
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
|
||
|
||
<tr><!-- start of several 2006AA bugs-->
|
||
<th scope="row">
|
||
2006AA
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Incorrect MeSH
|
||
<sup>
|
||
®
|
||
</sup>
|
||
Relationships
|
||
</p>
|
||
<p><strong>Problem: </strong>
|
||
<p>In the UMLS 2006AA release available for download from 2/13/06 to 2/24/06,
|
||
erroneous
|
||
relationships were
|
||
present in the MRREL file and duplicated in the files MRHIER, MRFILES, and
|
||
MRCOLS.
|
||
</p>
|
||
<p><strong>Solution: </strong>A corrected release was made available for download from the
|
||
<a class="usa-link" href="http://umlsks.nlm.nih.gov" target="_blank">
|
||
UMLSKS
|
||
</a>
|
||
on 3/2/2006.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>2/24/2006
|
||
</p>
|
||
</div>
|
||
|
||
<div>
|
||
<hr>
|
||
|
||
<p><strong>Title: </strong>Problem with MRHIER.RRF References
|
||
</p>
|
||
<p><strong>Problem: </strong>The removal of MRCXT.RRF from the default data set for 2006AA had the unintended
|
||
consequence of affecting
|
||
hierarchy information in MRHIER.RRF, such that the information cannot be
|
||
properly
|
||
resolved by MetamorphoSys
|
||
in all cases.
|
||
</p>
|
||
<p>In particular, in cases where a source with hierarchies is selectively
|
||
subsetted, a
|
||
situation may result
|
||
where the PTR field of MRHIER.RRF contains references to AUI values that do not
|
||
exist in MRCONSO.RRF.
|
||
</p>
|
||
<strong>Scope:</strong>
|
||
|
||
This will likely not be an issue for the majority of users. In the event that a
|
||
user's
|
||
configuration causes
|
||
MetamorphoSys to either keep or remove sources in their entirety, this
|
||
problematic data
|
||
condition does not
|
||
arise.
|
||
</p>
|
||
|
||
<p>There are four known ways in which this condition might occur. Each involves
|
||
removing parts of sources that
|
||
contain hierarchies without removing the entire source and operating with an
|
||
input
|
||
set that does not contain
|
||
MRCXT data:
|
||
</p>
|
||
<ol class="usa-list">
|
||
<li>Using the "remove UTF8" option in the output handler configuration
|
||
panel in
|
||
conjunction with a source
|
||
list that included sources with UTF-8 characters and a hierarchy
|
||
</li>
|
||
<li>Selecting "remove suppressible data" from the suppressible termgroups
|
||
advanced
|
||
options and choosing
|
||
suppressible termgroups from among the atoms of a source that contains
|
||
hierarchies
|
||
</li>
|
||
<li>Using the SampleMetaFilter (very rare)
|
||
</li>
|
||
<li>Using a user-created filter that selectively removes atoms from sources
|
||
with
|
||
hierarchies (very rare)
|
||
</li>
|
||
</ol>
|
||
<p>The first two situations will by far be the most common.
|
||
</p>
|
||
<p>When using the "remove UTF8" condition in conjunction with a Source List
|
||
configuration that includes sources
|
||
with UTF-8 characters, the resulting MRHIER.RRF will contain this data
|
||
condition.
|
||
The set of sources
|
||
containing UTF-8 characters (and contexts) includes:
|
||
</p>
|
||
<table>
|
||
<tbody>
|
||
<tr>
|
||
<th>
|
||
Source
|
||
</th>
|
||
<th>
|
||
Count
|
||
</th>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
HL7V2.5
|
||
</td>
|
||
<td>
|
||
<div>
|
||
2
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
HL7V3.0
|
||
</td>
|
||
<td>
|
||
<div>
|
||
12
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
MDRDUT
|
||
</td>
|
||
<td>
|
||
<div>
|
||
5123
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
MDRFRE
|
||
</td>
|
||
<td>
|
||
<div>
|
||
11786
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
MDRGER
|
||
</td>
|
||
<td>
|
||
<div>
|
||
6
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
MDRPOR
|
||
</td>
|
||
<td>
|
||
<div>
|
||
54372
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
MDRSPA
|
||
</td>
|
||
<td>
|
||
<div>
|
||
45295
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
MSH
|
||
</td>
|
||
<td>
|
||
<div>
|
||
293
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
MSHFRE
|
||
</td>
|
||
<td>
|
||
<div>
|
||
27274
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
MSHGER
|
||
</td>
|
||
<td>
|
||
<div>
|
||
9931
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
MSHITA
|
||
</td>
|
||
<td>
|
||
<div>
|
||
489
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
PDQ
|
||
</td>
|
||
<td>
|
||
<div>
|
||
49
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
SNOMEDCT
|
||
</td>
|
||
<td>
|
||
<div>
|
||
493
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
<br />
|
||
|
||
<p>When selecting term types to be suppressible that participate in contexts
|
||
and
|
||
using
|
||
the advanced options
|
||
"remove suppressible data" option, the resulting MRHIER.RRF will contain
|
||
this
|
||
data
|
||
condition.
|
||
</p>
|
||
<p>Following is a sample problematic MRHIER.RRF entry that occurs when the user
|
||
configures MetamorphoSys to
|
||
"remove UTF-8" and to keep all sources.
|
||
</p>
|
||
<pre>
|
||
C0000039|A7439429|1|A7455821|MSHFRE||A7474418.A7456206.A7456207.A7461322.A7452688.A7440176.A7452689.A7455821|||</pre>
|
||
<p>In this example, AUIs A7452688, A7452689, and A7455821 are not found in
|
||
MRCONSO.RRF.
|
||
</p>
|
||
<p>Here is another example:
|
||
</p>
|
||
<pre> C0000139|A7480712|1|A7504811|MSHGER||A7533768.A7484783.A7525302.A7504817.A7504811|||</pre>
|
||
<p>In this case, AUI A7525302 is not found in MRCONSO.RRF.
|
||
</p>
|
||
<strong>Solution: </strong>
|
||
<p>There is a work-around for this problem, albeit a time-consuming one. As
|
||
indicated
|
||
above, this problem
|
||
results when the input set does not contain MRCXT.RRF data. The presence of
|
||
MRCXT.RRF on the input side
|
||
would guarantee output data free of this data condition.
|
||
</p>
|
||
<p>The user should take the following steps:
|
||
</p>
|
||
<ol class="usa-list">
|
||
<li>Generate an output set using the desired configuration, making sure not
|
||
to
|
||
select options matching any
|
||
of the four conditions described above. The output subset should then
|
||
contain
|
||
all of the hierarchy data
|
||
for the set of sources selected for inclusion.
|
||
</li>
|
||
<li>Use the MRCXT builder to create a MRCXT.RRF file matching the
|
||
MRHIER.RRF
|
||
file.
|
||
</li>
|
||
<li>Use the first output set (including MRCXT.RRF) as the input and create
|
||
a
|
||
second
|
||
output, this time using
|
||
the options that created the initial problem. This second output set
|
||
should
|
||
be
|
||
what the user is looking
|
||
for.
|
||
</li>
|
||
</ol>
|
||
<p>So, consider the case where the user wanted the "keep everything" subset
|
||
with
|
||
the
|
||
"remove UTF-8" option
|
||
selected. In order to achieve this via the work-around, the user could take
|
||
the
|
||
following actions:
|
||
</p>
|
||
<ol class="usa-list">
|
||
<li>Configure the Source List to include all sources.
|
||
</li>
|
||
<li>Ensure that "remove UTF-8" was NOT checked in the output handler
|
||
configuration.
|
||
</li>
|
||
<li>Generate the output set.
|
||
</li>
|
||
<li>Run the MRCXT Builder to generate a full MRCXT.RRF file.
|
||
</li>
|
||
<li>Re-configure MetamorphoSys to point to the set of data generated in
|
||
#1-4.
|
||
Again
|
||
include all sources but
|
||
this time make sure that "remove UTF-8" IS checked.
|
||
</li>
|
||
<li>Generate a second output set. This one will contain correctly resolved
|
||
MRHIER.RRF data.
|
||
</li>
|
||
<li>Remove the first set of output files (unless additional subsets are to
|
||
be
|
||
made
|
||
from it).
|
||
</li>
|
||
</ol>
|
||
<p>A more technically sophisticated user could also use a perl script like the
|
||
one
|
||
below to manually remove the
|
||
unwanted MRHIER.RRF entries from their subset.
|
||
</p>
|
||
<pre>#!/usr/local/bin/perl
|
||
|
||
open (MRCONSO,"MRCONSO.RRF") || die "Could not open MRCONSO.RRF : $! $?\n"; while (‹MRCONSO›) {
|
||
chop;
|
||
split /\|/;
|
||
$auis{$_[7]} = 1;
|
||
}
|
||
close (MRCONSO);
|
||
open (MRHIER,"MRHIER.RRF") || die "Could not open MRHIER.RRF : $! $?\n"; while (‹MRHIER›) {
|
||
chop;
|
||
split /\|/;
|
||
$ptr = $_[6];
|
||
@ptr_auis = split /./, $ptr;
|
||
$missing = 0;
|
||
foreach $aui (@ptr_auis) {
|
||
unless ($auis{$aui}) {
|
||
$missing = 1;
|
||
last;
|
||
}
|
||
}
|
||
print "$_\n" unless $missing;
|
||
}
|
||
close (MRHIER);
|
||
</pre>
|
||
<p>The output of this script would be a corrected MRHIER.RRF file.
|
||
</p>
|
||
|
||
<p><strong>Date Posted: </strong>
|
||
<p>2/27/2006
|
||
</p>
|
||
</div>
|
||
|
||
<div>
|
||
<hr>
|
||
<br />
|
||
<p><strong>Title: </strong>LSN Attribute Incorrectly Defined
|
||
<p>Problem: The LSN attribute is incorrectly defined as "LOINC short name".
|
||
<p><strong>Solution: </strong>The correct definition for this attribute is "LOINC Spanish name". The offical
|
||
documentation is correct and
|
||
can be accessed at
|
||
<a class="usa-link" href="http://www.nlm.nih.gov/research/umls/archive/archive_home.html">
|
||
http://www.nlm.nih.gov/research/umls/archive/archive_home.html
|
||
</a>
|
||
. This issue will be resolved in the 2006AB release.
|
||
</p>
|
||
</div>
|
||
<p><strong>Date Posted: </strong>2/13/2006
|
||
</p><br />
|
||
</td>
|
||
</tr><!-- end several 2006AA bugs-->
|
||
|
||
|
||
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2005AC
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
ATN Field Too Short in the ORF File MRCOLS
|
||
<p>Problem: When generating an ORF subset with the database load script option, the ATN
|
||
field is set to 20 chars instead
|
||
of 50. Any sources that have ATN values greater than 20 that are loaded into a
|
||
database using one of
|
||
our scripts produces an error (data is longer than the field length).
|
||
<p><strong>Solution: </strong> After generating subset and the load script, edit the load script to make ATN
|
||
field
|
||
50 chars. This issue
|
||
will be resolved in the 2006AA release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>11/30/2005
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
<strong>
|
||
2005AC
|
||
</strong>
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
TS Fields in MRCON Not Properly Computed for Editor Suppressed Atoms
|
||
<p>Problem: When generating an ORF subset from ORF input, the TS fields in MRCON are
|
||
not properly computed for editor
|
||
suppressed atoms.
|
||
<p><strong>Solution: </strong> This issue will be resolved in the 2006AA release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>11/30/2005
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2005AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
MeSH Attribute Information Incorrectly Represented
|
||
</p>
|
||
<p><strong>Problem: </strong>The data problem reported on 7/19/2005 has been fixed. In the original 2005AB
|
||
release (release date
|
||
20050615), some data in the following MeSH attributes were incorrectly represented
|
||
in the Metathesaurus
|
||
files MRSAT and MRREL:
|
||
</p>
|
||
<strong>MeSH Attributes</strong>
|
||
<ul class="usa-list usa-list--unstyled">
|
||
<li>AN</li>
|
||
<li>EC</li>
|
||
<li>OL</li>
|
||
<li>AQL</li>
|
||
<li>FX</li>
|
||
<li>PA</li>
|
||
<li>CX</li>
|
||
<li>HN</li>
|
||
<li>PM</li>
|
||
<li>DC</li>
|
||
<li>MDA</li>
|
||
<li>RN</li>
|
||
<li>DS</li>
|
||
<li>MMR</li>
|
||
<li>RR</li>
|
||
<li>DX</li>
|
||
<li>MN</li>
|
||
</ul>
|
||
|
||
<p>Attributes from other sources, and MeSH data in other Metathesaurus
|
||
files, including
|
||
MRCONSO, MRDEF, MRSTY,
|
||
and MRHIER, were unaffected.
|
||
</p>
|
||
<p><strong>Solution: </strong>Licensees who use MeSH attribute data in their research or applications
|
||
should use
|
||
the corrected 2005AB UMLS
|
||
release. The corrected 2005AB UMLS release carries the release date of
|
||
20050718.
|
||
Release date is included in
|
||
the release.dat and mmsys.log files.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>7/26/2005
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2005AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
MetamorphoSys Errors Associated with Mac OS Tiger
|
||
</p>
|
||
<p><strong>Problem: </strong>We have found issues in the most recent Tiger update (10.4.2) that may cause
|
||
new
|
||
problems for users,
|
||
including application crashes. We are investigating and expect Apple to
|
||
remedy these
|
||
issues. One specific
|
||
Problem: Mac OS Tiger users receive an error message stating "Resources
|
||
temporarily
|
||
unavailable" when
|
||
running MetamorphoSys.
|
||
</p>
|
||
<p><strong>Solution: </strong>This error has been corrected in the 2005AC release of the UMLS. If you must
|
||
use an
|
||
older version, close all
|
||
unnecessary applications. Macintosh Tiger users (OS X 10.4) are reminded to
|
||
quit all
|
||
other applications
|
||
(including dashboard widgets) to avoid the Mac "resource temporarily
|
||
unavailable"
|
||
error.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>7/27/2005
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2005ABe
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Differing MD5 Files for AMBIGLUI.RRF, AMBIGSUI.RRF, MRAUI.RRF, MRCUI.RRF,
|
||
MRSMAP.RRF, and
|
||
MRSMAP.RRF
|
||
</p>
|
||
<p><strong>Problem: </strong>MD5 files created using Windows are not the same as MD5 files created on
|
||
other
|
||
operating systems.
|
||
</p>
|
||
<p><strong>Solution: </strong>There is no solution at this time. This problem will be corrected in the
|
||
2005AC
|
||
release.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>6/15/2005
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2005AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Disk Full Errors Are Not Detected and Reported in MetamorphoSys
|
||
</p>
|
||
<p><strong>Problem: </strong>In some circumstances disk full errors are not properly detected.
|
||
MetamorphoSys may
|
||
appear to complete
|
||
correctly but files are corrupted. Files may include truncated lines or null
|
||
characters inserted into the
|
||
data.
|
||
</p>
|
||
<p><strong>Solution: </strong>Users must be certain that they have adequate disk space before using
|
||
MetamorphoSys.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>6/15/2005
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2005AA
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Invalid Data in NDDF Update; Also Affects RxNorm Subsets
|
||
</p>
|
||
<p><strong>Problem: </strong>There are serious errors in the NDDF update in 2005AA that affect not only
|
||
NDDF in
|
||
the Metathesaurus, but
|
||
also RxNorm. Drug data that was added to the Metathesaurus from the November
|
||
NDDF
|
||
update are correct, but
|
||
over 100,000 NDDF drug names already in the Metathesaurus were incorrectly
|
||
marked as
|
||
obsolete. NDDF data, as
|
||
a separate source, and within the RxNorm subset, should not be used, or
|
||
should be
|
||
used with extreme caution.
|
||
</p>
|
||
<p><strong>Solution: </strong>A new RxNorm Cumulative Release File, including corrected NDDF data, will be
|
||
available in late February or
|
||
early March.
|
||
<br />
|
||
NDDF will be corrected in the UMLS 2005AB release, scheduled to be available
|
||
in
|
||
April 2005.
|
||
<br />
|
||
See also: RxNorm Cumulative Update.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>2/8/2005
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2005AA
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
RxNorm Cumulative Update: Non-Matching Codes for RxNorm Atoms
|
||
</p>
|
||
<p><strong>Problem: </strong>The RxNorm Cumulative Update of 11/17/2004 contains non-matching codes for
|
||
RxNorm
|
||
atoms. This update is
|
||
based on the 2004AC release of the UMLS, but contains all new codes for
|
||
RxNorm
|
||
atoms. These codes do not
|
||
correspond to previously assigned codes and the update cannot be applied to
|
||
existing
|
||
RxNorm data.
|
||
</p>
|
||
<p><strong>Solution: </strong>RxNorm data will be resynchronized with the 2005AA release, updated with
|
||
SNOMED CT
|
||
drug data, and the full
|
||
and corrected Cumulative RxNorm will be released in late February or early
|
||
March.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>2/8/2005
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2005AA
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
Missing Codes in Spanish and Portuguese Translations of MeSH 2005 (MSHSPA
|
||
and
|
||
MSHPOR)
|
||
</p>
|
||
<p><strong>Problem: </strong>For 2005AA, the Spanish and Portuguese translations of MeSH 2005 (MSHSPA and
|
||
MSHPOR)
|
||
do not include the MeSH
|
||
Descriptor Number in the CODE field in MRCONSO.RRF (MRCON in ORF).
|
||
</p>
|
||
<p><strong>Solution: </strong>Problem will be corrected in 2005AB.
|
||
</p>
|
||
<p><strong>Date Posted: </strong>1/18/2005
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2004AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Title: </strong>
|
||
ORF Database Load Scripts for Those Who Downloaded 2004AB Before Friday,
|
||
July
|
||
23rd
|
||
</p>
|
||
<p><strong>Problem: </strong>The Original Release Format (ORF) MySql and Oracle load scripts for indexes
|
||
are
|
||
missing column names.
|
||
</p>
|
||
<p><strong>Solution: </strong>
|
||
<ol type="a">
|
||
<li>Manually insert column names into script for indexes
|
||
<br />
|
||
or
|
||
</li>
|
||
<li><a class="usa-link" href="http://umlsks.nlm.nih.gov">
|
||
Download
|
||
</a>
|
||
and unzip the mmsys.zip file (64364251 bytes or 61 MB), then re-run
|
||
MetamorphoSys to recreate your data
|
||
</li>
|
||
</ol>
|
||
<p><strong>Date Posted: </strong>7/27/2004
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<th scope="row">
|
||
2004AB
|
||
</th>
|
||
<td>
|
||
<p><strong>Condition:
|
||
</strong>
|
||
User selects RxNorm subset from the initial Default Subsets list, then
|
||
disables the
|
||
filter by unchecking the
|
||
box on the RxNorm Output Options tab.</p>
|
||
|
||
<p><strong>
|
||
Bug:
|
||
</strong>
|
||
Unchecking the box does not disable the filter. The RxNorm filter is applied
|
||
regardless
|
||
of the state of the
|
||
checkbox.</p>
|
||
|
||
<p><strong>
|
||
Temporary Fix for 2004AB:
|
||
</strong>
|
||
Do not pick RxNorm filter on the Install menu and then attempt to deselect
|
||
this option
|
||
on the RxNorm Output
|
||
Option tab.</p>
|
||
<p>To be corrected in the 2004AC release.</p>
|
||
</p>
|
||
<p><strong>Date Posted: </strong>7/20/2004
|
||
</p>
|
||
</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
|
||
|
||
<p><br><a class="usa-button" href="#top">Back to Top</a></p>
|
||
|
||
|
||
</div><!-- end col-->
|
||
</div><!-- end row-->
|
||
|
||
|
||
|
||
|
||
|
||
<p class=”margin-top-5”><small>Last Reviewed: October 29, 2024</small></p>
|
||
|
||
</div>
|
||
</main>
|
||
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