499 lines
48 KiB
HTML
499 lines
48 KiB
HTML
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<!DOCTYPE html>
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<html lang="en-US">
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<head>
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<meta name="title" property="og:title" content="Porter Lab: Publications">
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<meta name="type" property="og:type" content="website">
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<meta name="image" property="og:image" content="https://www.nlm.nih.gov/images/NLMgeneric.jpg">
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<meta name="image:alt" property="og:image:alt" content="National Library of Medicine (NLM)">
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<meta name="twitter:card" content="summary_large_image">
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<meta name="twitter:site" content="@NLM_NIH">
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<meta name="twitter:title" content="Porter Lab: Publications">
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<meta name="twitter:image" content="https://www.nlm.nih.gov/images/NLMgeneric.jpg">
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<meta name="twitter:image:alt" content ="National Library of Medicine (NLM)">
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<meta charset="UTF-8">
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<meta name="viewport" content="width=device-width, initial-scale=1.0">
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<meta http-equiv="X-UA-Compatible" content="IE=edge,chrome=1">
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<link rel="stylesheet" href="/research/css/main.css" media="screen" >
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<link rel="stylesheet" href="/research/css/styles.css" media="screen" >
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<title>Porter Lab: Publications</title>
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<link rel="schema.DC" href="http://purl.org/dc/elements/1.1/" title="The Dublin Core metadata Element Set" />
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<meta name="DC.Title" content="Porter Lab: Publications" />
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<meta name="DC.Publisher" content="U.S. National Library of Medicine" />
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<meta name="DC.Date.Issued" content="2021-08-23" />
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<meta name="DC.Date.Modified" content="2022-12-13" />
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<meta name="NLMDC.Date.LastReviewed" content="2022-10-06" />
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<meta name="NLM.Contact.Email" content="lauren.porter@nih.gov" />
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<meta name="DC.Type" content="Photos of Staff, Programs, Activities, Building and Grounds" />
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<meta name="DC.Rights" content="Public Domain" />
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<style>
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@import url("font/stylesheet.css");
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@import url("OrigramPro/stylesheet.css");
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@font-face{
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font-family: 'Milliard Book';
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src: url("milliard-cufonfonts-webfont/milliard-book.woff");
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}
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.test_menu {
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font-family: "Gill Sans", "Gill Sans MT", "Myriad Pro", "DejaVu Sans Condensed", Helvetica, Arial, sans-serif;
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background-color: #444444;
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background-size: auto;
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color: white;
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}
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nav a:link {
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color:white;
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font-family:'Milliard Book';
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font-size:80%;
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display:table-cell;
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padding:10px;
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vertical-align:middle;
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position:relative;
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background-color: transparent;
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text-decoration: none;
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}
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nav a:hover {
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font-family:'Milliard Book';
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font-size:80%;
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padding:10px;
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vertical-align:middle;
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position:relative;
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background-color: transparent;
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text-decoration: underline;
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}
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body {overflow-y:scroll}
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/* Dropdown Button */
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.dropbtn {
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color: #FFFFFF;
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font-family:'Milliard Book';
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font-size:100%;
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padding: 10px;
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background-color: transparent;
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border: none;
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}
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/* The container <div> - needed to position the dropdown content */
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.dropdown {
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position: relative;
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display: block;
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}
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/* Dropdown Content (Hidden by Default) */
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.dropdown-content {
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display: none;
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position: absolute;
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right: 10%;
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background-color: #444444;
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font-size:80%;
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box-shadow: 0px 8px 16px 0px rgba(0,0,0,0.2);
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z-index: 1;
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}
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.dropdown-content a {
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display: block;
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position: absolute;
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float: none;
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color: white;
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padding: 12px 16px;
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text-decoration: none;
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}
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.dropdown-content a:hover {
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background-color: #fff;
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color: #444444;
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}
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.dropdown:hover .dropdown-content {
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display: block;
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}
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.dropbtn a:hover{color:white}
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@media screen and (max-width: 574px) {
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.nav_image {
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width:100%;
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height:auto; }
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}
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@media screen and (min-width: 575px) {
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.nav_image {
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width:100%;
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height:auto; }
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}
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@media screen and (min-width: 990px) {
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.nav_image {
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width:60%;
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height:auto;
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}
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}
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@media screen and (max-width: 989px) {
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.mySlides{
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width:100%;
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height:auto; }
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}
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@media screen and (min-width: 990px) {
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.mySlides {
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width:70%;
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height:auto;
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}
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}
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@media screen and (max-width: 989px) {
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nav {
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font-size:2.5vw }
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}
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@media screen and (min-width: 990px) {
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nav {
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font-size:2vw
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}
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@media screen and (min-width: 1201px) {
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nav {
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font-size:1.6vw
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}
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td {background-color: #444444 !important;}
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.usa-grid, .usa-grid-full { max-width: none !important;}
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.hero {display: none;}
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table {margin:0;}
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</style>
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<link href="css/lsb_layout.css" rel="stylesheet" type="text/css">
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<link href="MyFontsWebfontsKit/MyFontsWebfontsKit.css" rel="stylesheet" type="text/css">
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<link href="css/navbar.css" rel="stylesheet" type="text/css">
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<link href="css/testbar.css" rel="stylesheet" type="text/css">
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<link href="css/lsb_layout.css" rel="stylesheet" type="text/css">
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<!-- Google Tag Manager -->
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<script>(function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start': new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src='//www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);})(window,document,'script','dataLayer','GTM-MT6MLL');</script>
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<!-- End Google Tag Manager -->
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</head>
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<body>
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<!-- Google Tag Manager -->
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<noscript><iframe src="//www.googletagmanager.com/ns.html?id=GTM-MT6MLL" height="0" width="0" style="display:none;visibility:hidden" title="googletagmanager"></iframe></noscript>
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<!-- End Google Tag Manager -->
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<header class="header">
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<div class="usa-grid">
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<div class="header-container">
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<a href="https://www.nlm.nih.gov/" class="icon_logo" title="National Library of Medicine" aria-label="National Library of Medicine" id="anch_0">
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<h2 class="text-center" style="font-family:'Milliard Book'"><strong>2023</strong></h2>
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<p class="ref_center"><br /><strong>Distinguishing features of fold-switching proteins</strong><br /><br /> <strong><u>Chakravarty, D.</u>, <u>Schafer, J.W.</u>, <u>Porter, L.L.*</u></strong> <strong><em><br /><br /><a style="color:black" href="https://onlinelibrary.wiley.com/doi/full/10.1002/pro.4596">Protein Science</a></em> <strong> </strong><a style="color:black" href="pdfs/distinguishing_features_ps2023.pdf">[PDF]</a></strong></p>
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<p class="ref_center"><br /><strong>Evolutionary selection of proteins with two folds </strong><br /><br /> <strong><u>Schafer, J.W.</u></strong>, <strong><u>Porter, L.L.*</u></strong> <strong><em><br /><br /><a style="color:black" href="https://www.biorxiv.org/content/10.1101/2023.01.18.524637v1">bioRxiv</a></em> <strong> </strong><a style="color:black" href="pdfs/Schafer_coevolution_LLP_011823.pdf">[PDF]</a></strong></p>
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<h2 class="text-center" style="font-family:'Milliard Book'"><strong>2022</strong></h2>
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<p class="ref_center"><br /><strong>Identification of a covert evolutionary pathway between two protein folds</strong><br /><br /> <strong><u>Chakravarty, D.</u></strong>, Sreenivasan, S., Swint-Kruse, S., <strong><u>Porter, L.L.*</u></strong> <strong><em><br /><br /><a style="color:black" href="https://www.biorxiv.org/content/10.1101/2022.12.08.519646v1">bioRxiv</a></em> <strong> </strong><a style="color:black" href="pdfs/FixJ_KdpE_full_final.pdf">[PDF]</a></strong></p>
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<p class="ref_center"><br /><strong>Many dissimilar NusG protein domains switch between α-helix and β-sheet folds</strong><br /><br /> <strong><u>Porter, L.L.*</u>, <u>Kim, A.K.</u>, <u>Rimal, S.</u></strong>, Looger, L.L., Majumdar, A., Mensh, B.D., Starich, M.S., and Strub, M.P. <strong><em><br /><br /><a style="color:black" href="https://www.nature.com/articles/s41467-022-31532-9">Nature Communications</a></em> <strong> </strong><a style="color:black" href="pdfs/sequence_space_final.pdf">[PDF]</a></strong></p>
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<p class="ref_center"><br /><strong>AlphaFold2 fails to predict protein fold switching</strong><br /><br /> <strong><u>Chakravarty, D.</u>, <u>Porter, L.L.*</u></strong><strong><em><br /><br /><a style="color:black" href="https://onlinelibrary.wiley.com/doi/10.1002/pro.4353">Protein Science</a></em> <strong> </strong><a style="color:black" href="pdfs/chakravarty_AF2.pdf">[PDF]</a></strong></p>
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<h2 class="text-center" style="font-family:'Milliard Book'"><strong>2021</strong></h2>
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<p class="ref_center"><br /><strong>Fold-switching proteins</strong><br /><br /> LiWang, A.*, <strong><u>Porter,L.L.*</u></strong>, Wang, L.P.* <strong><em><br /><br /><a style="color:black" href="https://onlinelibrary.wiley.com/doi/full/10.1002/bip.23478">Biopolymers</a></em> <strong> </strong><a style="color:black" href="pdfs/fold_switching_proteins_BP2021.pdf">[PDF]</a></strong></p>
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<p class="ref_center"><br /><strong>Predictable fold switching by the SARS‐CoV‐2 protein ORF9b</strong><br /><br /> <strong><u>Porter, L.L.*</u> <br /><br /><em><a style="color:black" href="https://onlinelibrary.wiley.com/doi/full/10.1002/pro.4097">Protein Science</a></em><strong> </strong> <a style="color:black" href="pdfs/orf9b.pdf">[PDF]</a></strong></p>
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<p class="ref_center"><br /><strong>A sequence-based method for predicting extant fold switchers that undergo alpha-helix to beta-strand transitions</strong><br /><br /> <strong><u>Mishra, S.</u></strong>, Looger, L.L., <strong><u>Porter, L.L.*</u> <br /><br /><em><a style="color:black" href="https://onlinelibrary.wiley.com/doi/10.1002/bip.23471">Biopolymers</a></em><strong> </strong><a style="color:black" href="pdfs/mishra_biopolymers_2021.pdf">[PDF]</a></strong></p>
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<p class="ref_center"><br /><strong>A high-throughput predictive method for sequence-similar fold switchers</strong><br /> <br /><strong><u>Kim, A.K.</u></strong>, Looger, L.L., <strong><u>Porter, L.L.*</u><br /><br /> <em><a style="color:black" href="https://onlinelibrary.wiley.com/doi/pdf/10.1002/bip.23416">Biopolymers</a></em><strong> </strong><a style="color:black" href="pdfs/kim_biopolymers_2021.pdf">[PDF]</a></strong></p>
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<p class="ref_center"><br /><strong>Functional and regulatory roles of fold-switching proteins</strong><br /><br /> <strong><u>Kim, A.K.</u></strong>, <strong><u>Porter, L.L.*</u><br /><br /> <em><a style="color:black" href="https://www.sciencedirect.com/science/article/abs/pii/S0969212620303786">Structure</a></em><strong> </strong><a style="color:black" href="pdfs/kim_structure_2021.pdf">[PDF]</a></strong></p>
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<h2 class="text-center" style="font-family:'Milliard Book'"><strong>2019</strong></h2>
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<p class="ref_center"><br /><strong>Inaccurate secondary structure predictions often indicate protein fold switching</strong><br /><br /> <strong><u>Mishra, S.</u></strong>, Looger, L.L., <strong><u>Porter, L.L.*</u> <br /><br /><em><a style="color:black" href="https://onlinelibrary.wiley.com/doi/full/10.1002/pro.3664">Protein Science</a></em><strong> </strong><a style="color:black" href="pdfs/mishra_2019.pdf">[PDF]</a></strong></p>
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