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<div class="h1">PubMed Central Update: MLA 2008</div>
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<p>A <a href="https://webmeeting.nih.gov/p71158499/">recording of the original presentation</a> is available.</p>
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<p>Slide 1</p>
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<p align="center"><img src="graphics/pmc/image002.gif" alt="PubMed Central Update" width="364" height="274" /></p>
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<p align="center"><strong>PubMed Central Update <br /></strong>Jack Logue <br />MLA Conference <br />May 2008</p>
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<p>Slide 2</p>
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<p align="center"><img src="graphics/pmc/image004.gif" alt="What is PubMed Central?" width="364" height="274" /></p>
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<p align="center"><strong>What is PubMed Central? </strong></p>
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<ul>
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<li>PubMed Central (PMC) is the U.S. National Library of Medicine's digital archive of biomedical and life sciences journal literature</li>
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<li>A logical extension of NLM’s general mandate</li>
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<li>Provides free and unrestricted access</li>
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<li>Integrates journal literature with other valuable information resources in the NCBI database family (e.g., PubMed, Nucleotide, Protein)</li>
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<li>Digitizes journal back issues to create a complete electronic record of a journal</li>
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<li>Launched in February 2000</li>
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</ul>
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<p>Slide 3</p>
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<p align="center"><img src="graphics/pmc/image006.gif" alt="Can you tell me how to get to PMC?" width="364" height="274" /></p>
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<p align="center"><strong>Can you tell me how to get to PMC? </strong></p>
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<p>Many ways to get to PMC:</p>
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<p>[link removed] http://www.pubmedcentral.nih.gov/</p>
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<p>Slide 4</p>
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<p align="center"><img src="graphics/pmc/image008.gif" alt="Can you tell me how to get to PMC?" width="364" height="274" /></p>
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<p align="center"><strong>Can you tell me how to get to PMC?</strong></p>
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<ul>
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<li>Most users search PubMed (or Google) to get to PMC articles</li>
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<li>It’s worth visiting PMC directly b/c not all articles in PMC have a PubMed record (out of PubMed scope).</li>
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</ul>
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<p>Slide 5</p>
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<p align="center"><img src="graphics/pmc/image010.gif" alt="Can you tell me how to get to PMC?" width="364" height="274" /></p>
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<p align="center"><strong>Can you tell me how to get to PMC? </strong></p>
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<ul>
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<li>Using the Abstract Plus banner.</li>
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<li>You’ll also see the free article icon on PubMed search page</li>
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</ul>
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<p>Slide 6</p>
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<p align="center"><img src="graphics/pmc/image012.gif" alt="Can you tell me how to get to PMC?" width="364" height="274" /></p>
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<p align="center"><strong>Can you tell me how to get to PMC? </strong></p>
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<ul>
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<li>PubMed Limits includes PMC subset</li>
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<li>Translates to pubmed pmc local[ sb]</li>
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</ul>
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<p>Slide 7</p>
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<p align="center"><img src="graphics/pmc/image014.gif" alt="What's in PMC?" width="364" height="274" /></p>
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<p align="center"><strong>What’s in PMC? </strong></p>
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<p>MLA 2007: 325 journals, 960,000 articles, 4m unique visitors in April 2007</p>
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<p>MLA 2008: 383 journals, 1,512,652 articles, 4.3m unique visitors in April 2008</p>
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<ul>
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<li>Substantial growth in offering AND usage continues at a rapid pace. Figures don’t include administrative materials (TOCs, covers, etc.)</li>
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<li>Public Access mandate has greatly increased publisher interest and applications.</li>
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<li>Will hit 1m articles later this spring. A great time was had by all as we congregated by the window. We had our cake…and then we ate it.</li>
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<li>1 st quarter 2007: averaging ~3m unique IPs per month</li>
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</ul>
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<p>Slide 8</p>
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<p align="center"><img src="graphics/pmc/image016.gif" alt="What's in PMC?" width="364" height="274" /></p>
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<p align="center"><strong>What’s in PMC?</strong></p>
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<p>~ 1,500,000 articles</p>
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<p>New & recent electronic content: 475,000</p>
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<p>= appx 1/3 of PMC content</p>
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<p>Back issue scanning: +1,030,000</p>
|
||
<p>Very valuable resource to medical history searchers</p>
|
||
<p>great benefit to joining PMC – will discuss later</p>
|
||
<p>Manuscripts</p>
|
||
<p>basically: author manuscripts based on research funded by NIH, WT (UK), Inserm (France), some other grant funding agencies</p>
|
||
<p>I’ll get into how these sets of content differ later on. (Public Access has also impacted this significantly)</p>
|
||
<p>Slide 9</p>
|
||
<p align="center"><img src="graphics/pmc/image018.gif" alt="What's in PMC?" width="364" height="274" /></p>
|
||
<p align="center"><strong>What’s in PMC?</strong></p>
|
||
<p>New & recent electronic content: 475,000 articles</p>
|
||
<ul>
|
||
<li>Publisher agrees to provide:</li>
|
||
<li>Full text XML</li>
|
||
<li>High-resolution ("print") PDFs</li>
|
||
<li>Original high-resolution images</li>
|
||
<li>Supplementary material</li>
|
||
</ul>
|
||
<p>XML is preferred for archiving</p>
|
||
<ul>
|
||
<li>Technology-independent and portable</li>
|
||
<li>Allows for richer linking and automated text analysis</li>
|
||
<li>Allows for longer "shelf-life" of data</li>
|
||
</ul>
|
||
<p>PMC is not just a web site with journal articles</p>
|
||
<p>Xml/ sgml provided to us by publisher is converted to archival standard</p>
|
||
<p>Articles from across all the journals in the archive are standardized to the same archiving dtd</p>
|
||
<p>When user clicks to view article, html page is created ‘on the fly’ based on the standardized xml</p>
|
||
<p>It’s the standardized xml that really constitutes the archive</p>
|
||
<p>Can also analyse xml for better linking to other NCBI databases (to pubmed citations, taxonomy records, etc)</p>
|
||
<p>Soon will be able to point back to PMC from other NCBI dbs</p>
|
||
<p>Slide 10</p>
|
||
<p align="center"><img src="graphics/pmc/image020.gif" alt="What's in PMC?" width="364" height="274" /></p>
|
||
<p align="center"><strong>What’s in PMC?</strong></p>
|
||
<p>Back Issue Digitization Project: 1,030,000 articles</p>
|
||
<ul>
|
||
<li>Print journals scanned “cover to cover” (from earliest volume)</li>
|
||
<li>Create and archive high resolution PDFs with true reproduction of figures/images</li>
|
||
<li>OCR text used to do full text searched and build list of linked reference citations</li>
|
||
</ul>
|
||
<p>Another great source of pride to PMC – and great benefit to searchers and publishers - to be able to include a journal ‘cover to cover’</p>
|
||
<p>High level of quality assurance</p>
|
||
<p>We apply high-level character recognition to be able to recreate and pull out reference citations</p>
|
||
<p>Major benefit to societies/publishers, who get to keep the entire run of scanned content (and distribute it to other archives)</p>
|
||
<p>Slide 11</p>
|
||
<p align="center"><img src="graphics/pmc/image022.gif" alt="What's in PMC?" width="364" height="274" /></p>
|
||
<p align="center"><strong>What’s in PMC?</strong></p>
|
||
<p>Example of reference citations, along with links we’re then able to generate pointing to PubMed records</p>
|
||
<p>Slide 12</p>
|
||
<p align="center"><img src="graphics/pmc/image024.gif" alt="To join PMC..." width="364" height="274" /></p>
|
||
<p align="center"><strong>To Join PMC…</strong></p>
|
||
<p>Here’s what happens from publisher’s perspective:</p>
|
||
<ul>
|
||
<li>Formal agreement signed between NLM and publisher</li>
|
||
<li>Journal may delay free access to up to a year or more</li>
|
||
<li>Copyright is retained by publisher or author</li>
|
||
<li>Publisher may designate journal (or certain articles) as open access</li>
|
||
<li>Deposits are permanent: journal may stop depositing new content but may not withdraw content already deposited in PMC</li>
|
||
</ul>
|
||
<p>Slide 13</p>
|
||
<p align="center"><img src="graphics/pmc/image026.gif" alt="Joined PMC in 2007/08" width="364" height="274" /></p>
|
||
<p align="center"><strong>Joined PMC in 2007/08</strong></p>
|
||
<p>Acta Crystallographica Section F, molecular systems biology, Netherlands Heart Journal, Studies in Mycology...</p>
|
||
<p>~50 new journals joined PMC on a full participation basis last year. ~50-60 more currently in the evaluation pipeline. These will become available in a steady stream from now to the foreseeable future.</p>
|
||
<p>Many of these are from abroad. Centers in Korea, Eastern and Western Europe.</p>
|
||
<p>Slide 14</p>
|
||
<p align="center"><img src="graphics/pmc/image028.gif" alt="Completed Back Scanning Archive in 2007/08" width="364" height="274" /></p>
|
||
<p align="center"><strong>Completed Back Scanning Archive in 2007/08</strong></p>
|
||
<p>The American Journal of Pathology (1896- ), British Journal of Pharmacology (1946- ), Journal of the Royal Society of Medicine (1809- )...</p>
|
||
<p>Some back scanning that was completed recently.</p>
|
||
<p>Back Scanning program currently not active, due to budgetary constraints.</p>
|
||
<p>From medical history standpoint, there’s very interesting content here</p>
|
||
<p>Slide 15</p>
|
||
<p align="center"><img src="graphics/pmc/image030.gif" alt="Forthcoming Scanning Projects" width="364" height="274" /></p>
|
||
<p align="center"><strong>Forthcoming Scanning Projects</strong></p>
|
||
<ul>
|
||
<li>BMJ + Specialist titles nearly complete.</li>
|
||
<li>Journal of the National Medical Association</li>
|
||
<li>But alas…funding is gone!</li>
|
||
</ul>
|
||
<p>JNMA focuses on advancing the art of medicine for African-Americans. </p>
|
||
<p>JNMA founded as an alternative to JAMA because African Americans were not allowed to join the AMA at that time.</p>
|
||
<p>Flat budgets have sunk the scanning project!</p>
|
||
<p>Slide 16</p>
|
||
<p align="center"><img src="graphics/pmc/image032.gif" alt="OA Titles Joining PMC 2007/08" width="364" height="274" /></p>
|
||
<p align="center"><strong>OA Titles Joining PMC 2007/08</strong></p>
|
||
<p>MDPI Marine Drugs, Environmental Health Perspectives, Yale Journal of Biology and Medicine, Clinical and Developmental Immunology, Metal-Based Drugs, International Journal of Plant Genomics</p>
|
||
<p>Total = 200+ journals with full or partial open access</p>
|
||
<p>OA = many journals are going beyond embargo-free and want to make they’re content as widely-available as possible.</p>
|
||
<p>Users benefit a couple of ways:</p>
|
||
<p>Articles immediately available (and in some cases distributable according to Creative Commons terms or whatever OA terms are on the article)</p>
|
||
<p>The metadata – and in some cases f/t - for OA articles in PMC is available for downloading (for citation analysis, etc). Some nice visualizations have been built using this data.</p>
|
||
<p>OA is a viable model. Hindawi is making a profit. Other publishers (like Bentham) are making an effort to also profit by this method.</p>
|
||
<p>Slide 17</p>
|
||
<p align="center"><img src="graphics/pmc/image034.gif" alt="Open Access Feeds " width="364" height="274" /></p>
|
||
<p align="center"><strong>Open Access Feeds </strong></p>
|
||
<p>Blackwell Online Open, Springer Open Choice Articles, Taylor and Frances “ iOpenAccess” – coming soon</p>
|
||
<p>Nice arrangement whereby some publishers have agreed to provide their OA articles to us – whether or not the journals are full PMC participants.</p>
|
||
<p>Slide 18</p>
|
||
<p align="center"><img src="graphics/pmc/image036.gif" alt="Finding NCBI Related Records" width="364" height="274" /></p>
|
||
<p align="center"><strong>Finding NCBI Related Records </strong></p>
|
||
<p>Now let’s move on to some features</p>
|
||
<p>This is not a new feature, just a reminder of how one can link to other NCBI records from PMC article</p>
|
||
<p>Slide 19</p>
|
||
<p align="center"><img src="graphics/pmc/image038.gif" alt="Tables and Images in Context " width="364" height="274" /></p>
|
||
<p align="center"><strong>Tables and Images in Context </strong></p>
|
||
<p>Moved tables and figures from back of article into the article body.</p>
|
||
<p>Slide 20</p>
|
||
<p align="center"><img src="graphics/pmc/image040.gif" alt="PMC Help on Bookshelf " width="364" height="274" /></p>
|
||
<p align="center"><strong>PMC Help on Bookshelf</strong></p>
|
||
<p>A user’s guide to PMC is published on the Books site, as a part of the NCBI Help manual.</p>
|
||
<p>Slide 21</p>
|
||
<p align="center"><img src="graphics/pmc/image042.gif" alt="PMC News RSS Feed " width="364" height="274" /></p>
|
||
<p align="center"><strong>PMC News RSS Feed </strong></p>
|
||
<p>Slide 22</p>
|
||
<p align="center"><img src="graphics/pmc/image044.gif" alt="UK PubMed Central (UKPMC) " width="364" height="274" /></p>
|
||
<p align="center"><strong>UK PubMed Central (UKPMC)</strong></p>
|
||
<p>Went live a few months ago</p>
|
||
<p>PMC mirror</p>
|
||
<p>Slide 23</p>
|
||
<p align="center"><img src="graphics/pmc/image046.gif" alt="UK PubMed Central (UKPMC) " width="364" height="274" /></p>
|
||
<p align="center"><strong>UK PubMed Central (UKPMC) </strong></p>
|
||
<p align="left">Partnership btwn NLM and health agencies in UK</p>
|
||
<p>Has its own manuscript submission system for research funded by UK agencies – Bart will discuss</p>
|
||
<p>Slide 24</p>
|
||
<p align="center"><img src="graphics/pmc/image048.gif" alt="Improved Limits " width="364" height="274" /></p>
|
||
<p align="center"><strong>Improved Limits</strong></p>
|
||
<p>Like PubMed limits, includes autocomplete on journal field and author field</p>
|
||
<p>Journal field reflects full PMC participating journals as well as journal manuscripts via NIHMS</p>
|
||
<p>Nice feature of author field is that since PMC indexes full names (when provided), you can see full names</p>
|
||
<p>Slide 25</p>
|
||
<p align="center"><img src="graphics/pmc/image050.gif" alt="Contact Us " width="364" height="274" /></p>
|
||
<p align="center"><strong>Contact Us </strong></p>
|
||
<p>PubMed Central: <strong><a href="//www.ncbi.nlm.nih.gov/pmc/">//www.pubmedcentral.nih.gov </a></strong></p>
|
||
<p><strong> </strong>Questions about PMC?: <strong><a href="mailto:pubmedcentral@nih.gov">pubmedcentral@nih.gov</a></strong></p>
|
||
|
||
|
||
|
||
|
||
<p class=”margin-top-5”><small>Last Reviewed: February 14, 2014</small></p>
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