723 lines
34 KiB
HTML
723 lines
34 KiB
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Finding Chemical Information
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<p>
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There are a variety of ways you can navigate this course. You can:</p>
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<ul>
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<li>Click the Prev and Next buttons at the bottom of each page to move through the material.</li>
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<li>Use the main navigation with dropdown subsections featured on all pages.</li>
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<li>Use a combination of the above methods to explore the course contents.</li>
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<p>For the NLM Navigator activities:</p>
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<ul>
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<li>Turn off pop-up blockers in your browser.</li>
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<li>Follow along in the live PubChem site in the right side frame.</li>
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<li>Use the arrows in the side bar to navigate through the activities.</li>
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<li>Jump to a specific section by clicking the menu button with three lines in the upper right-side corner.</li>
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<li><strong>Important note</strong>: Use the arrows or the menu button to navigate to a previous section. Using your browser's back button may cause you to exit the NLM Navigator tutorial.</li>
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<div class="container-fluid">
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<div class="col col-12">
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<!-- Section -->
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<section id="item-1" class="row"><!-- Do not include class pt-3 on first section -->
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<div class="col-lg-12">
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<div class="px-2 mb-5 bg-default">
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<!-- Header -->
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<h2>About PubChem
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</h2>
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<hr>
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<h3>Data Sources</h3>
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<br>
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<div class="row">
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<div class="col-lg-12">
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<p>Data sources are who supplies chemical data to PubChem. Data sources can directly submit chemical information to PubChem or PubChem will proactively add relevant chemical information from data sources.</p>
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</div>
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</div>
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<div class="row">
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<div class="col-lg-8 mx-auto text-center">
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<div class="graphic">
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<a href="img/PubChem_Sources.png" target="_blank"><img class="img-fluid" src="img/PubChem_Sources.png" alt="PubChem Data Sources graphic showing Academic Labs, Governmental Agencies, Chemical Supply, Pharmaceutical Companies, Journal Publishers, and Individual Researchers pointing at the PubChem logo."></a>
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</div>
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</div>
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</div>
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<div class="row">
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<div class="col-lg-12">
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<p>To browse the data sources that have contributed to PubChem, click <a href="https://pubchem.ncbi.nlm.nih.gov/source/" target="_blank">here</a> or on the <strong>Explore Data Sources</strong> link located below the PubChem search box, next to the statistcs.</p>
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</div>
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<div class="row">
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<div class="col-lg-7 mx-auto text-center">
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<div class="graphic">
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<a href="img/PubChem_DataSources.png" target="_blank"><img class="img-fluid shadow" src="img/PubChem_DataSources.png" alt="PubChem Data Sources page screen shot"></a>
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</div>
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</div>
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</div>
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<div class="col-lg-12">
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<br>
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<p>On the Data Sources page, search for a specific source or filter sources according to:</p>
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<ul><li><strong>Data Type</strong> (covered later in this tutorial)</li>
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<li><strong>Source Category</strong> (the type of source, like a chemical vendor or journal publisher)</li>
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<li><strong>Source Status</strong> (if the source is actively contributing data or is a <a href="https://pubchemdocs.ncbi.nlm.nih.gov/legacy-designation" target="_blank">legacy source</a>)</li>
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<li><strong>Source Country</strong></li>
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</ul>
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<br>
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<h4><i class="fas fa-user-edit"></i> Exercises</h4>
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<div>
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<p>Open the <a href="https://pubchem.ncbi.nlm.nih.gov/source/" target="_blank">PubChem Data Sources page</a> and answer the following questions:</p>
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<div class="card shadow-sm">
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<div class="card-body">
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<ol class="pubmed-numbers p-l-0">
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<li><strong>True or False? Chemical vendors contribute data to PubChem.</strong></li>
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</ol>
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<br>
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<div class="form-check mb-1">
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<input class="form-check-input" type="radio" name="flexRadioDefaultQ1" id="flexRadioDefault1">
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<label class="form-check-label" for="flexRadioDefault1">
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a) True
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</label>
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||
</div>
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||
<div class="form-check mb-1">
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<input class="form-check-input" type="radio" name="flexRadioDefaultQ1" id="flexRadioDefault2">
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<label class="form-check-label" for="flexRadioDefault2">
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b) False
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</label>
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</div>
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||
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<!-- Button trigger modal -->
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<div class="text-center">
|
||
<button type="button" class="btn btn-primary" data-bs-toggle="modal" data-bs-target="#Exercise1Modal">
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||
Show Answer
|
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</button>
|
||
</div>
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<!-- Modal -->
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<div class="modal fade" id="Exercise1Modal" tabindex="-1" role="dialog" aria-labelledby="Exercise1ModalLabel" aria-hidden="true">
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<div class="modal-dialog" role="document">
|
||
<div class="modal-content">
|
||
<div class="modal-header">
|
||
<h5 class="modal-title" id="Exercise1ModalLabel">Answer</h5>
|
||
<button type="button" class="btn-close" data-bs-dismiss="modal" aria-label="Close">
|
||
</button>
|
||
</div>
|
||
<div class="modal-body">
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<p><strong>a) True.</strong> (Hint: Locate the "Source Category" list of filters. Are chemical vendors listed as a type of category?)
|
||
</p>
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||
</div>
|
||
<div class="modal-footer">
|
||
<button type="button" class="btn btn-secondary" data-bs-dismiss="modal">Close</button>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
</div>
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|
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</div>
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<br>
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||
<div class="card shadow-sm">
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||
<div class="card-body">
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<ol class="pubmed-numbers p-l-0" style="counter-reset: my-counter 1">
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<li><strong>True or False? PubChem contains data sources only from the United States.</strong></li>
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</ol>
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||
<br>
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||
<div class="form-check mb-1">
|
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<input class="form-check-input" type="radio" name="flexRadioDefaultQ2" id="flexRadioDefault3">
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<label class="form-check-label" for="flexRadioDefault3">
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a) True
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</label>
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</div>
|
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<div class="form-check mb-1">
|
||
<input class="form-check-input" type="radio" name="flexRadioDefaultQ2" id="flexRadioDefault4">
|
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<label class="form-check-label" for="flexRadioDefault4">
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b) False
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</label>
|
||
</div>
|
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|
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|
||
<!-- Button trigger modal -->
|
||
<div class="text-center">
|
||
<button type="button" class="btn btn-primary" data-bs-toggle="modal" data-bs-target="#Exercise2Modal">
|
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Show Answer
|
||
</button>
|
||
</div>
|
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|
||
<!-- Modal -->
|
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<div class="modal fade" id="Exercise2Modal" tabindex="-1" role="dialog" aria-labelledby="Exercise2ModalLabel" aria-hidden="true">
|
||
<div class="modal-dialog" role="document">
|
||
<div class="modal-content">
|
||
<div class="modal-header">
|
||
<h5 class="modal-title" id="Exercise2ModalLabel">Answer</h5>
|
||
<button type="button" class="btn-close" data-bs-dismiss="modal" aria-label="Close">
|
||
</button>
|
||
</div>
|
||
<div class="modal-body">
|
||
<p><strong>b) False.</strong> (Hint: Locate the "Source Country" map or list of filters. Is the United States the only country listed?)
|
||
</p>
|
||
</div>
|
||
<div class="modal-footer">
|
||
<button type="button" class="btn btn-secondary" data-bs-dismiss="modal">Close</button>
|
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</div>
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</div>
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</div>
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||
</div>
|
||
|
||
</div>
|
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|
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|
||
</div>
|
||
</div>
|
||
|
||
<br>
|
||
|
||
<h4><i class="fas fa-user-edit"></i> Exercises</h4>
|
||
<div>
|
||
<p>You can also view details about specific data sources by searching for a source on this page. Find the search box located at the top of the page. Type <strong>Chemotion</strong> into the search box. As you type, PubChem will automatically start showing relevant results. (Hint: don’t forget to clear any filters!)</p>
|
||
<p>Click on the <strong>Chemotion</strong> link and explore its record to answer the following questions:</p>
|
||
|
||
<div class="card shadow-sm">
|
||
<div class="card-body">
|
||
|
||
<ol class="pubmed-numbers p-l-0">
|
||
<li><strong>Which country does Chemotion operate from?</strong></li>
|
||
</ol>
|
||
<br>
|
||
<div class="form-check mb-2">
|
||
<input class="form-check-input" type="radio" name="flexRadioDefaultQ3" id="flexRadioDefault5">
|
||
<label class="form-check-label" for="flexRadioDefault5">
|
||
a) Germany
|
||
</label>
|
||
</div>
|
||
<div class="form-check mb-2">
|
||
<input class="form-check-input" type="radio" name="flexRadioDefaultQ3" id="flexRadioDefault6">
|
||
<label class="form-check-label" for="flexRadioDefault6">
|
||
b) United States
|
||
</label>
|
||
</div>
|
||
<div class="form-check mb-2">
|
||
<input class="form-check-input" type="radio" name="flexRadioDefaultQ3" id="flexRadioDefault7">
|
||
<label class="form-check-label" for="flexRadioDefault7">
|
||
c) United Kingdom
|
||
</label>
|
||
</div>
|
||
<div class="form-check mb-2">
|
||
<input class="form-check-input" type="radio" name="flexRadioDefaultQ3" id="flexRadioDefault8">
|
||
<label class="form-check-label" for="flexRadioDefault8">
|
||
d) China
|
||
</label>
|
||
</div>
|
||
|
||
|
||
<!-- Button trigger modal -->
|
||
<div class="text-center">
|
||
<button type="button" class="btn btn-primary" data-bs-toggle="modal" data-bs-target="#Exercise3Modal">
|
||
Show Answer
|
||
</button>
|
||
</div>
|
||
|
||
<!-- Modal -->
|
||
<div class="modal fade" id="Exercise3Modal" tabindex="-1" role="dialog" aria-labelledby="Exercise3ModalLabel" aria-hidden="true">
|
||
<div class="modal-dialog" role="document">
|
||
<div class="modal-content">
|
||
<div class="modal-header">
|
||
<h5 class="modal-title" id="Exercise3ModalLabel">Answer</h5>
|
||
<button type="button" class="btn-close" data-bs-dismiss="modal" aria-label="Close">
|
||
</button>
|
||
</div>
|
||
<div class="modal-body">
|
||
<p><strong>a) Germany.</strong> (Hint: Look for the map or address to see where Chemotion is located. Also, make sure you’re spelling Chemotion correctly.)
|
||
</p>
|
||
</div>
|
||
<div class="modal-footer">
|
||
<button type="button" class="btn btn-secondary" data-bs-dismiss="modal">Close</button>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
</div>
|
||
</div>
|
||
|
||
<br>
|
||
|
||
<div class="card shadow-sm">
|
||
<div class="card-body">
|
||
|
||
<ol class="pubmed-numbers p-l-0" style="counter-reset: my-counter 1">
|
||
<li><strong>What type of data does Chemotion contribute to PubChem? </strong></li>
|
||
</ol>
|
||
<br>
|
||
<div class="form-check mb-2">
|
||
<input class="form-check-input" type="radio" name="flexRadioDefaultQ4" id="flexRadioDefault9">
|
||
<label class="form-check-label" for="flexRadioDefault9">
|
||
a) Annotations
|
||
</label>
|
||
</div>
|
||
<div class="form-check mb-2">
|
||
<input class="form-check-input" type="radio" name="flexRadioDefaultQ4" id="flexRadioDefault10">
|
||
<label class="form-check-label" for="flexRadioDefault10">
|
||
b) Live Substances
|
||
</label>
|
||
</div>
|
||
<div class="form-check mb-2">
|
||
<input class="form-check-input" type="radio" name="flexRadioDefaultQ4" id="flexRadioDefault11">
|
||
<label class="form-check-label" for="flexRadioDefault11">
|
||
c) Live BioAssay
|
||
</label>
|
||
</div>
|
||
<div class="form-check mb-2">
|
||
<input class="form-check-input" type="radio" name="flexRadioDefaultQ4" id="flexRadioDefault12">
|
||
<label class="form-check-label" for="flexRadioDefault12">
|
||
d) Pathways
|
||
</label>
|
||
</div>
|
||
|
||
|
||
<!-- Button trigger modal -->
|
||
<div class="text-center">
|
||
<button type="button" class="btn btn-primary" data-bs-toggle="modal" data-bs-target="#Exercise4Modal">
|
||
Show Answer
|
||
</button>
|
||
</div>
|
||
|
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<!-- Modal -->
|
||
<div class="modal fade" id="Exercise4Modal" tabindex="-1" role="dialog" aria-labelledby="Exercise4ModalLabel" aria-hidden="true">
|
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<div class="modal-dialog" role="document">
|
||
<div class="modal-content">
|
||
<div class="modal-header">
|
||
<h5 class="modal-title" id="Exercise4ModalLabel">Answer</h5>
|
||
<button type="button" class="btn-close" data-bs-dismiss="modal" aria-label="Close">
|
||
</button>
|
||
</div>
|
||
<div class="modal-body">
|
||
<p><strong>b) Live Substances.</strong> (Hint: On the Chemotion summary page, look at the "Data in PubChem" row. What type of data is listed?)
|
||
</p>
|
||
</div>
|
||
<div class="modal-footer">
|
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<button type="button" class="btn btn-secondary" data-bs-dismiss="modal">Close</button>
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|
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|
||
|
||
<p><strong>Next, we will review the different types of data in PubChem.</strong></p>
|
||
|
||
<p><strong>Note: You can return to the PubChem search box from any page by clicking either the:</strong></p>
|
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|
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|
||
|
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