96 lines
6.5 KiB
Text
96 lines
6.5 KiB
Text
#URL https://www.ncbi.nlm.nih.gov/snp/rs4673/download/frequency
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#NCBI Reference SNP (rs) Report ALPHA rs4673
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#Current Build 156
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#Released October 16, 2022
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#Organism Homo sapiens
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#Position chr16:88646828 (GRCh38.p14)
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#Alleles A>G / A>T
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#Variation Type SNV (Single Nucleotide Variation)
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#Publications 70 citations
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#
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#Frequency Data Table
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#################
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#Study Population Group Samplesize Ref Allele Alt Allele BioProject ID BioSample ID
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Allele Frequency Aggregator Total Global 350882 A=0.342109 G=0.657891, T=0.000000 PRJNA507278 SAMN10492705
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Allele Frequency Aggregator European Sub 303360 A=0.347989 G=0.652011, T=0.000000 SAMN10492695
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Allele Frequency Aggregator Other Sub 18362 A=0.31266 G=0.68734, T=0.00000 SAMN11605645
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Allele Frequency Aggregator African Sub 8636 A=0.4568 G=0.5432, T=0.0000 SAMN10492703
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Allele Frequency Aggregator Latin American 2 Sub 7212 A=0.2542 G=0.7458, T=0.0000 SAMN10492700
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Allele Frequency Aggregator Asian Sub 6954 A=0.0869 G=0.9131, T=0.0000 SAMN10492704
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Allele Frequency Aggregator South Asian Sub 5224 A=0.3700 G=0.6300, T=0.0000 SAMN10492702
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Allele Frequency Aggregator Latin American 1 Sub 1134 A=0.3686 G=0.6314, T=0.0000 SAMN10492699
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TopMed Global Study-wide 264690 A=0.356980 G=0.643020 PRJNA400167
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gnomAD - Exomes Global Study-wide 250626 A=0.302295 G=0.697705 PRJNA398795 SAMN07488253
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gnomAD - Exomes European Sub 134694 A=0.307311 G=0.692689 SAMN10181265
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gnomAD - Exomes Asian Sub 48988 A=0.26106 G=0.73894
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gnomAD - Exomes American Sub 34568 A=0.22894 G=0.77106 SAMN07488255
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gnomAD - Exomes African Sub 16210 A=0.44904 G=0.55096 SAMN07488254
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gnomAD - Exomes Ashkenazi Jewish Sub 10048 A=0.43232 G=0.56768 SAMN07488252
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gnomAD - Exomes Other Sub 6118 A=0.3341 G=0.6659 SAMN07488248
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gnomAD - Genomes Global Study-wide 139950 A=0.350268 G=0.649732 PRJNA398795 SAMN07488253
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gnomAD - Genomes European Sub 75822 A=0.31439 G=0.68561 SAMN10181265
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gnomAD - Genomes African Sub 41896 A=0.45412 G=0.54588 SAMN07488254
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gnomAD - Genomes American Sub 13636 A=0.27567 G=0.72433 SAMN07488255
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gnomAD - Genomes Ashkenazi Jewish Sub 3320 A=0.4190 G=0.5810 SAMN07488252
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gnomAD - Genomes East Asian Sub 3122 A=0.0865 G=0.9135 SAMN07488251
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gnomAD - Genomes Other Sub 2154 A=0.3417 G=0.6583 SAMN07488248
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ExAC Global Study-wide 120788 A=0.309170 G=0.690830 PRJEB8661 SAMN07490465
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ExAC Europe Sub 72846 A=0.31582 G=0.68418
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ExAC Asian Sub 25138 A=0.27047 G=0.72953
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ExAC American Sub 11552 A=0.22464 G=0.77536
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ExAC African Sub 10354 A=0.45132 G=0.54868
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ExAC Other Sub 898 A=0.302 G=0.698 SAMN07486028
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The PAGE Study Global Study-wide 78680 A=0.34446 G=0.65554 PRJNA168052 SAMN10868975
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The PAGE Study AfricanAmerican Sub 32500 A=0.45228 G=0.54772 SAMN10868721
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The PAGE Study Mexican Sub 10810 A=0.24995 G=0.75005 SAMN10868735
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The PAGE Study Asian Sub 8316 A=0.1023 G=0.8977 SAMN10868722
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The PAGE Study PuertoRican Sub 7916 A=0.3469 G=0.6531 SAMN10868968
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The PAGE Study NativeHawaiian Sub 4534 A=0.2532 G=0.7468 SAMN10868777
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The PAGE Study Cuban Sub 4228 A=0.3614 G=0.6386 SAMN10868733
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The PAGE Study Dominican Sub 3828 A=0.3929 G=0.6071 SAMN10868734
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The PAGE Study CentralAmerican Sub 2450 A=0.2522 G=0.7478 SAMN10868729
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The PAGE Study SouthAmerican Sub 1982 A=0.3128 G=0.6872 SAMN10868969
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The PAGE Study NativeAmerican Sub 1260 A=0.3190 G=0.6810 SAMN10868739
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The PAGE Study SouthAsian Sub 856 A=0.332 G=0.668 SAMN10868970
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14KJPN JAPANESE Study-wide 28250 A=0.09395 G=0.90605 PRJNA678214 SAMN16789458
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8.3KJPN JAPANESE Study-wide 16752 A=0.09187 G=0.90813 PRJNA678214 SAMN16789458
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1000Genomes_30x Global Study-wide 6404 A=0.3412 G=0.6588 PRJEB31736 SAMN07490465
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1000Genomes_30x African Sub 1786 A=0.5062 G=0.4938 SAMN07486022
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1000Genomes_30x Europe Sub 1266 A=0.3428 G=0.6572 SAMN07488239
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1000Genomes_30x South Asian Sub 1202 A=0.3735 G=0.6265 SAMN07486027
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1000Genomes_30x East Asian Sub 1170 A=0.0803 G=0.9197 SAMN07486024
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1000Genomes_30x American Sub 980 A=0.310 G=0.690 SAMN07488242
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1000Genomes Global Study-wide 5008 A=0.3357 G=0.6643 PRJEB6930 SAMN07490465
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1000Genomes African Sub 1322 A=0.5083 G=0.4917 SAMN07486022
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1000Genomes East Asian Sub 1008 A=0.0843 G=0.9157 SAMN07486024
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1000Genomes Europe Sub 1006 A=0.3419 G=0.6581 SAMN07488239
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1000Genomes South Asian Sub 978 A=0.375 G=0.625 SAMN07486027
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1000Genomes American Sub 694 A=0.307 G=0.693 SAMN07488242
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Genetic variation in the Estonian population Estonian Study-wide 4480 A=0.2929 G=0.7071 PRJNA489787
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The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 A=0.3324 G=0.6676 PRJEB7217
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UK 10K study - Twins TWIN COHORT Study-wide 3708 A=0.3546 G=0.6454 PRJEB7218
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KOREAN population from KRGDB KOREAN Study-wide 2930 A=0.0922 G=0.9078, T=0.0000 PRJNA589833
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HGDP-CEPH-db Supplement 1 Global Study-wide 2084 A=0.2927 G=0.7073 PRJEB6463
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HGDP-CEPH-db Supplement 1 Est_Asia Sub 470 A=0.100 G=0.900 SAMN13169023
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HGDP-CEPH-db Supplement 1 Central_South_Asia Sub 414 A=0.319 G=0.681 SAMN13169022
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HGDP-CEPH-db Supplement 1 Middle_Est Sub 350 A=0.440 G=0.560 SAMN13169025
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HGDP-CEPH-db Supplement 1 Europe Sub 320 A=0.359 G=0.641 SAMN13169024
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HGDP-CEPH-db Supplement 1 Africa Sub 242 A=0.550 G=0.450 SAMN13169020
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HGDP-CEPH-db Supplement 1 America Sub 216 A=0.093 G=0.907 SAMN13169021
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HGDP-CEPH-db Supplement 1 Oceania Sub 72 A=0.12 G=0.88 SAMN13169026
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HapMap Global Study-wide 1892 A=0.3631 G=0.6369 PRJNA60817 SAMN10820145
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HapMap American Sub 770 A=0.294 G=0.706 SAMN10821182
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HapMap African Sub 692 A=0.520 G=0.480 SAMN10821181
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HapMap Asian Sub 254 A=0.075 G=0.925 SAMN10821184
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HapMap Europe Sub 176 A=0.466 G=0.534 SAMN10821183
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Korean Genome Project KOREAN Study-wide 1832 A=0.0922 G=0.9078 PRJNA609628
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Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 A=0.329 G=0.671 PRJEB5829 SAMN13000132
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A Vietnamese Genetic Variation Database Global Study-wide 610 A=0.056 G=0.944 PRJNA515199 SAMN10744005
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Northern Sweden ACPOP Study-wide 600 A=0.247 G=0.753 PPRJNA503394 SAMN10359154
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Medical Genome Project healthy controls from Spanish population Spanish controls Study-wide 534 A=0.363 G=0.637 PRJEB8705 SAMN13001620
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SGDP_PRJ Global Study-wide 500 A=0.196 G=0.804 PRJNA586841
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FINRISK Finnish from FINRISK project Study-wide 302 A=0.166 G=0.834 PRJEB7895 SAMN13002954
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Qatari Global Study-wide 216 A=0.407 G=0.593 PRJNA288297 SAMN13019808
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Ancient Sardinia genome-wide 1240k capture data generation and analysis Global Study-wide 88 A=0.43 G=0.57 PRJEB36033 SAMN15458807
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Siberian Global Study-wide 52 A=0.27 G=0.73 PRJNA267856 SAMN13113809
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The Danish reference pan genome Danish Study-wide 40 A=0.23 G=0.78 PRJEB7725 SAMN13003120
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