95 lines
6.3 KiB
Text
95 lines
6.3 KiB
Text
#URL https://www.ncbi.nlm.nih.gov/snp/rs301/download/frequency
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#NCBI Reference SNP (rs) Report ALPHA rs301
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#Current Build 156
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#Released October 14, 2022
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#Organism Homo sapiens
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#Position chr8:19959423 (GRCh38.p14)
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#Alleles T>C
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#Variation Type SNV (Single Nucleotide Variation)
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#Publications 11 citations
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#
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#Frequency Data Table
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#################
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#Study Population Group Samplesize Ref Allele Alt Allele BioProject ID BioSample ID
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TopMed Global Study-wide 264690 T=0.745748 C=0.254252 PRJNA400167
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gnomAD - Exomes Global Study-wide 242970 T=0.758386 C=0.241614 PRJNA398795 SAMN07488253
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gnomAD - Exomes European Sub 129914 T=0.757239 C=0.242761 SAMN10181265
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gnomAD - Exomes Asian Sub 48338 T=0.77608 C=0.22392
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gnomAD - Exomes American Sub 33586 T=0.80379 C=0.19621 SAMN07488255
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gnomAD - Exomes African Sub 15320 T=0.66508 C=0.33492 SAMN07488254
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gnomAD - Exomes Ashkenazi Jewish Sub 9910 T=0.6744 C=0.3256 SAMN07488252
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gnomAD - Exomes Other Sub 5902 T=0.7636 C=0.2364 SAMN07488248
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Allele Frequency Aggregator Total Global 193094 T=0.757320 C=0.242680 PRJNA507278 SAMN10492705
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Allele Frequency Aggregator European Sub 163652 T=0.757913 C=0.242087 SAMN10492695
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Allele Frequency Aggregator Other Sub 13020 T=0.76436 C=0.23564 SAMN11605645
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Allele Frequency Aggregator African Sub 8322 T=0.6979 C=0.3021 SAMN10492703
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Allele Frequency Aggregator Asian Sub 6346 T=0.8024 C=0.1976 SAMN10492704
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Allele Frequency Aggregator Latin American 2 Sub 1010 T=0.7733 C=0.2267 SAMN10492700
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Allele Frequency Aggregator Latin American 1 Sub 464 T=0.754 C=0.246 SAMN10492699
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Allele Frequency Aggregator South Asian Sub 280 T=0.775 C=0.225 SAMN10492702
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gnomAD - Genomes Global Study-wide 139972 T=0.743649 C=0.256351 PRJNA398795 SAMN07488253
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gnomAD - Genomes European Sub 75860 T=0.76268 C=0.23732 SAMN10181265
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gnomAD - Genomes African Sub 41908 T=0.69851 C=0.30149 SAMN07488254
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gnomAD - Genomes American Sub 13614 T=0.77384 C=0.22616 SAMN07488255
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gnomAD - Genomes Ashkenazi Jewish Sub 3322 T=0.6908 C=0.3092 SAMN07488252
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gnomAD - Genomes East Asian Sub 3120 T=0.7994 C=0.2006 SAMN07488251
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gnomAD - Genomes Other Sub 2148 T=0.7616 C=0.2384 SAMN07488248
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ExAC Global Study-wide 109670 T=0.743421 C=0.256579 PRJEB8661 SAMN07490465
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ExAC Europe Sub 65364 T=0.73770 C=0.26230
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ExAC Asian Sub 24204 T=0.77029 C=0.22971
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ExAC American Sub 10364 T=0.79477 C=0.20523
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ExAC African Sub 8968 T=0.6510 C=0.3490
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ExAC Other Sub 770 T=0.770 C=0.230 SAMN07486028
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The PAGE Study Global Study-wide 78700 T=0.75179 C=0.24821 PRJNA168052 SAMN10868975
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The PAGE Study AfricanAmerican Sub 32514 T=0.69708 C=0.30292 SAMN10868721
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The PAGE Study Mexican Sub 10810 T=0.79389 C=0.20611 SAMN10868735
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The PAGE Study Asian Sub 8318 T=0.8165 C=0.1835 SAMN10868722
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The PAGE Study PuertoRican Sub 7918 T=0.7824 C=0.2176 SAMN10868968
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The PAGE Study NativeHawaiian Sub 4534 T=0.8363 C=0.1637 SAMN10868777
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The PAGE Study Cuban Sub 4230 T=0.7466 C=0.2534 SAMN10868733
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The PAGE Study Dominican Sub 3828 T=0.7518 C=0.2482 SAMN10868734
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The PAGE Study CentralAmerican Sub 2450 T=0.7845 C=0.2155 SAMN10868729
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The PAGE Study SouthAmerican Sub 1982 T=0.7785 C=0.2215 SAMN10868969
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The PAGE Study NativeAmerican Sub 1260 T=0.7714 C=0.2286 SAMN10868739
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The PAGE Study SouthAsian Sub 856 T=0.779 C=0.221 SAMN10868970
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14KJPN JAPANESE Study-wide 28258 T=0.80674 C=0.19326 PRJNA678214 SAMN16789458
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8.3KJPN JAPANESE Study-wide 16760 T=0.80453 C=0.19547 PRJNA678214 SAMN16789458
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GO Exome Sequencing Project Global Study-wide 13006 T=0.65893 C=0.34107 PRJNA192955
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GO Exome Sequencing Project European American Sub 8600 T=0.6815 C=0.3185
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GO Exome Sequencing Project African American Sub 4406 T=0.6148 C=0.3852
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1000Genomes_30x Global Study-wide 6404 T=0.7447 C=0.2553 PRJEB31736 SAMN07490465
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1000Genomes_30x African Sub 1786 T=0.6932 C=0.3068 SAMN07486022
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1000Genomes_30x Europe Sub 1266 T=0.7235 C=0.2765 SAMN07488239
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1000Genomes_30x South Asian Sub 1202 T=0.7945 C=0.2055 SAMN07486027
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1000Genomes_30x East Asian Sub 1170 T=0.7632 C=0.2368 SAMN07486024
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1000Genomes_30x American Sub 980 T=0.783 C=0.217 SAMN07488242
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1000Genomes Global Study-wide 5008 T=0.6180 C=0.3820 PRJEB6930 SAMN07490465
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1000Genomes African Sub 1322 T=0.6316 C=0.3684 SAMN07486022
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1000Genomes East Asian Sub 1008 T=0.5089 C=0.4911 SAMN07486024
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1000Genomes Europe Sub 1006 T=0.5408 C=0.4592 SAMN07488239
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1000Genomes South Asian Sub 978 T=0.777 C=0.223 SAMN07486027
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1000Genomes American Sub 694 T=0.638 C=0.362 SAMN07488242
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Genetic variation in the Estonian population Estonian Study-wide 4480 T=0.7504 C=0.2496 PRJNA489787
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KOREAN population from KRGDB KOREAN Study-wide 2930 T=0.7949 C=0.2051 PRJNA589833
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HapMap Global Study-wide 1892 T=0.7585 C=0.2415 PRJNA60817 SAMN10820145
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HapMap American Sub 770 T=0.783 C=0.217 SAMN10821182
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HapMap African Sub 692 T=0.723 C=0.277 SAMN10821181
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HapMap Asian Sub 254 T=0.787 C=0.213 SAMN10821184
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HapMap Europe Sub 176 T=0.750 C=0.250 SAMN10821183
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Genome-wide autozygosity in Daghestan Global Study-wide 1134 T=0.7390 C=0.2610 PRJNA576826 SAMN13013121
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Genome-wide autozygosity in Daghestan Daghestan Sub 626 T=0.720 C=0.280 SAMN13013126
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Genome-wide autozygosity in Daghestan Near_East Sub 144 T=0.785 C=0.215 SAMN13013123
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Genome-wide autozygosity in Daghestan Central Asia Sub 122 T=0.787 C=0.213 SAMN13013124
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Genome-wide autozygosity in Daghestan Europe Sub 108 T=0.759 C=0.241 SAMN13013127
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Genome-wide autozygosity in Daghestan South Asian Sub 98 T=0.69 C=0.31 SAMN13013122
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Genome-wide autozygosity in Daghestan Caucasus Sub 36 T=0.78 C=0.22 SAMN13013125
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CNV burdens in cranial meningiomas Global Study-wide 784 T=0.827 C=0.173 PRJEB37584 SAMN15458720
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CNV burdens in cranial meningiomas CRM Sub 784 T=0.827 C=0.173 SAMN15458720
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Northern Sweden ACPOP Study-wide 600 T=0.790 C=0.210 PPRJNA503394 SAMN10359154
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A Vietnamese Genetic Variation Database Global Study-wide 587 T=0.828 C=0.172 PRJNA515199 SAMN10744005
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Medical Genome Project healthy controls from Spanish population Spanish controls Study-wide 534 T=0.740 C=0.260 PRJEB8705 SAMN13001620
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Qatari Global Study-wide 216 T=0.759 C=0.241 PRJNA288297 SAMN13019808
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SGDP_PRJ Global Study-wide 216 T=0.417 C=0.583 PRJNA586841
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Ancient Sardinia genome-wide 1240k capture data generation and analysis Global Study-wide 86 T=0.74 C=0.26 PRJEB36033 SAMN15458807
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The Danish reference pan genome Danish Study-wide 40 T=0.75 C=0.25 PRJEB7725 SAMN13003120
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Siberian Global Study-wide 22 T=0.50 C=0.50 PRJNA267856 SAMN13113809
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