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<li><a href="#">Overview</a><ul>
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<li><a href="/gtr/docs/about/">About GTR</a></li>
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<li><a title="Submission overview" href="/gtr/docs/submit/">Submission to GTR</a></li>
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<li><a title="Resources included in GTR and where to locate a genetics professional" href="/gtr/docs/resources/">GTR resources</a></li>
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<li><a title="Overview of how to submit novel laboratory information" href="/gtr/docs/submit/add_lab/">Register a new lab</a></li>
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<li><a href="#">Genetic Test Submission</a><ul>
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<li><a title="Overview of genetic test submissions" href="/gtr/docs/submit/">Getting started</a></li>
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<li><a title="Instructions for clinical genetic test submissions" href="/gtr/docs/submit/add_test/">Clinical tests</a></li>
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<li><a title="Instructions for spreadsheet submissions for clinical genetic tests" href="/gtr/docs/fulltest/">Clinical tests by spreadsheet</a></li>
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<li><a title="Instructions for API submissions for clinical genetic tests" href="/gtr/docs/gtr_api_http/">Clinical tests by api</a></li>
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<li><a title="Instructions for research genetic test submissions" href="/gtr/docs/submit/add_research/">Research tests</a></li>
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<li><a href="#">Microbe Test Submission</a><ul>
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<li><a title="Overview of microbe test submissions" href="/gtr/docs/microbe_test/">Getting started</a></li>
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<li><a title="Instructions for clinical microbe test submissions" href="/gtr/docs/submit/add_microbe_clinical/">Clinical tests</a></li>
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<li><a title="Instructions for spreadsheet submissions for clinical microbe tests" href="/gtr/docs/microbe_fulltest/">Clinical tests by spreadsheet</a></li>
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<li><a title="Instructions for API submissions for clinical microbe tests" href="/gtr/docs/gtr_api_http/">Clinical tests by api</a></li>
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<li><a title="Instructions for research microbe test submissions" href="/gtr/docs/submit/add_microbe_research/">Research tests</a></li>
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</ul>
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</li>
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<li><a href="#">Search GTR</a><ul>
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<li><a title="How to use and search the GTR website" href="/gtr/docs/help/">Search tips</a></li>
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<li><a href="/gtr/docs/advanced_search">Advanced search</a></li>
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<li><a href="/gtr/docs/common_searches/">Common searches</a></li>
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<form id="form-helpdocs" action="/gtr/docs/" method="get">
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<h1>
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Overview</h1>
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<div>
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<h1 id="about-gtr">About GTR<sup>®</sup></h1>
|
||
<p>Participation in the GTR is voluntary. There is no charge to submit data or to use the website.</p>
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||
<p>This document contains information about the definition and regulation of tests, the types of tests contained in the Genetic Testing Registry (GTR) and how to recognize them, and how search results are ranked. The table of contents expedites navigation to the section of interest.</p>
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<p>Selected references about the GTR are cited at the end of this document. </p>
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<div class="toc">
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<ul>
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<li><a href="#definition">Definition of a Genetic Test in the GTR</a></li>
|
||
<li><a href="#tests">Clinical and Research Tests</a></li>
|
||
<li><a href="#research">Definition of a Research Test</a></li>
|
||
<li><a href="#content">Current Test Content in the GTR</a><ul>
|
||
<li><a href="#appearance-of-registered-gtr-tes">Appearance of registered GTR tests</a></li>
|
||
<li><a href="#sendout-tests">Send-out tests</a></li>
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||
</ul>
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</li>
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||
<li><a href="#regulatory">Regulatory Information in GTR</a></li>
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||
<li><a href="#ranking">Ranking of Search Results</a></li>
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||
<li><a href="#references">Selected References about the GTR</a></li>
|
||
<li><a href="#TM">GTR is a Registered Trademark</a></li>
|
||
</ul>
|
||
</div>
|
||
<h2 id="definition">Definition of a Genetic Test in the GTR</h2>
|
||
<p>A genetic test involves an analysis of human chromosomes, deoxyribonucleic acid, ribonucleic acid, genes, and/or gene products (<em>e.g</em>., enzymes and other types of proteins), which is predominately used to detect heritable or somatic mutations, genotypes, or phenotypes related to disease and health.</p>
|
||
<p>[Definition is adapted from the <a href="https://osp.od.nih.gov/wp-content/uploads/2013/11/SACGHS_oversight_report.pdf">April 2008 Report</a> of the Secretary's Advisory Committee on Genetics, Health, and Society (SACGHS) on the <em>U.S. System of Oversight of Genetic Testing: A Response to the Charge of the Secretary of Health and Human Services</em> (page 17).]</p>
|
||
<h2 id="tests">Clinical and Research Tests</h2>
|
||
<p>GTR currently contains information about genetic and microbe tests intended for clinical use and also accepts registrations for genetic and microbe research tests.</p>
|
||
<h2 id="research">Definition of a Research Test</h2>
|
||
<p>For the purposes of the GTR, a research test is defined as a test that is performed for the purpose of contributing to generalizable knowledge or for a laboratory to generate data in order to make technical improvements to a test.</p>
|
||
<p>[Definition is based on the definition of research used in <a href="http://www.hhs.gov/ohrp/humansubjects/guidance/45cfr46.html#46.102">Title 45 CFR part 46 of Health and Human Services regulations (46.102(d)</a>], which codifies the U.S. Federal Policy for the Protection of Human Subjects, or the <a href="http://www.hhs.gov/ohrp/humansubjects/commonrule/index.html">Common Rule</a>. The definition also aligns with the medical research definition used in the international <a href="http://www.wma.net/en/30publications/10policies/b3/index.html">Declaration of Helsinki</a> (#7).]</p>
|
||
<h2 id="content">Current Test Content in the GTR</h2>
|
||
<p>The Genetic Testing Registry contains information about clinical and research tests for Mendelian disorders and drug responses as well as somatic/cancer variation. GTR includes includes multigenic, array-based, biochemical, cytogenetic, and molecular tests. Molecular and serologic clinical and research tests for microorganisms - bacteria, viruses, and parasites - that play a role in human health and infectious disease are also within scope for GTR; examples, nucleic acid amplification and serologic tests for SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), the virus which causes COVID-19, real-time multiplex RT-PCR tests for norovirus, a gastrointestinal pathogen, and tests for the human microbiome.</p>
|
||
<p>GTR content comes from these information sources:</p>
|
||
<ol>
|
||
<li>Test providers who register in GTR by submitting laboratory and test data, and</li>
|
||
<li>Automatically provided data supplemented from NCBI’s databases</li>
|
||
</ol>
|
||
<h3 id="appearance-of-registered-gtr-tes">Appearance of registered GTR tests</h3>
|
||
<p>Registered tests have:</p>
|
||
<ol>
|
||
<li>A unique GTR accession and version number located below the test name</li>
|
||
<li>Test names that are specified by the submitting laboratory</li>
|
||
<li>Content for the test is in several sections on the page, that can be accessed using the navigation tool</li>
|
||
</ol>
|
||
<p>To view the information content offered by the GTR, explore a registered GTR test and the corresponding laboratory record.</p>
|
||
<p>
|
||
<img src="/core/assets/gtr/images/sca_test_django.png" alt="GTR test example" />
|
||
</p>
|
||
<h3 id="sendout-tests">Send-out tests</h3>
|
||
<p>GTR does not include tests that are performed entirely at an outside lab/facility (send-outs).</p>
|
||
<h2 id="regulatory">Regulatory Information in GTR</h2>
|
||
<p>In the U.S., clinical tests may be provided only by laboratories certified by the Centers for Medicare & Medicaid Services (CMS) through the Clinical Laboratory Improvement Amendments of 1988 (<a href="https://www.cms.gov/Regulations-and-Guidance/Legislation/CLIA/index.html">CLIA</a>). The GTR includes information about CLIA status if provided by the laboratory, including CLIA certification numbers and expiration dates.</p>
|
||
<p>Not all tests entered into the GTR have been cleared or approved by the U.S. Food and Drug Administration (FDA). GTR includes information about FDA test review where available. This information is provided by the submitter and is not independently reviewed by NIH or FDA. FDA has generally exercised enforcement discretion over a class of in vitro diagnostics termed Laboratory Developed Tests (LDTs). More information about FDA oversight of LDTs can be found <a href="http://www.fda.gov/MedicalDevices/ProductsandMedicalProcedures/InVitroDiagnostics/ucm407296.htm">here</a>.</p>
|
||
<p>Community standards for Good Laboratory Practices are available for review for <a href="http://www.cdc.gov/mmwr/preview/mmwrhtml/rr6102a1.htm?s_cid=rr6102a1_e">biochemical genetic testing and newborn screening</a> and <a href="http://www.cdc.gov/mmwr/pdf/rr/rr5806.pdf">molecular genetic testing</a>.</p>
|
||
<h2 id="ranking">Ranking of Search Results</h2>
|
||
<p>Search results are primarily determined by the search term chosen by the user and the filtering strategy. Weighting is applied to present records to the user that contain more detailed information among initial results.</p>
|
||
<p>Searches that produce a list of results are ordered according to the following factors:</p>
|
||
<ol>
|
||
<li>
|
||
<p>Relevance sorting evaluates the presence and frequency of the search term within records. The sort order is ranked according to relevance. A limit is set for how much a search term can increase relevance.</p>
|
||
</li>
|
||
<li>
|
||
<p>Tests containing more completed recommended fields have a higher sort order than others. For example, registered tests with completed fields for Clinical utility, Clinical validity and Target population are weighted more heavily than tests without this information.</p>
|
||
</li>
|
||
<li>The laboratory comparison page is alphabetical by institution. If there is no institution, the list is alphabetical by laboratory name.</li>
|
||
</ol>
|
||
<h2 id="references">Selected References about the GTR</h2>
|
||
<ol>
|
||
<li><em>The NIH genetic testing registry: a new, centralized database of genetic tests to enable access to comprehensive information and improve transparency</em>
|
||
Wendy S. Rubinstein; Donna R. Maglott; Jennifer M. Lee; Brandi L. Kattman; Adriana J. Malheiro; Michael Ovetsky; Vichet Hem; Viatcheslav Gorelenkov; Guangfeng Song; Craig Wallin; Nora Husain; Shanmuga Chitipiralla; Kenneth S. Katz; Douglas Hoffman; Wonhee Jang; Mark Johnson; Fedor Karmanov; Alexander Ukrainchik; Mikhail Denisenko; Cathy Fomous; Kathy Hudson; James M. Ostell<br />
|
||
<em>Nucleic Acids Research</em> 2013; <span class="slug-vol">41 </span><span class="slug-issue"> (D1): </span><span class="slug-pages"> D925-D935. </span><span class="slug-doi-wrapper"> doi: <span class="slug-doi" title="10.1093/nar/gks1173">10.1093/nar/gks1173</span></span><br />
|
||
<a href="http://nar.oxfordjournals.org/content/41/D1/D925.abstract">Abstract</a> <a href="http://nar.oxfordjournals.org/content/41/D1/D925.full">Full Text</a> <a href="http://nar.oxfordjournals.org/content/41/D1/D925.full.pdf%2Bhtml">PDF</a></li>
|
||
</ol>
|
||
<h2 id="TM"><strong>GTR</strong> is a Registered Trademark</h2>
|
||
<p><strong>GTR</strong> is Registered, U.S. Patent and Trademark Office under Registration Number 4,302,210.</p>
|
||
<p>
|
||
<span id="shared-content-1"></span>
|
||
</p>
|
||
</div>
|
||
<hr />
|
||
<h2>How to use GTR's web site</h2>
|
||
<div>
|
||
<h1 id="how-to-use-gtrs-web-site">How to use GTR's web site</h1>
|
||
<p>This page describes how to use the GTR to find tests and other genetic information. The content of this site is designed to assist health care providers and researchers navigating the landscape of genetic tests. <strong><em>Patients and consumers</em></strong> with specific questions about a genetic test should contact a health care provider or a genetics professional.</p>
|
||
<p>NIH does not independently verify information submitted to the GTR; it relies on submitters to provide information that is accurate and not misleading. NIH makes no endorsements of tests or laboratories listed in the GTR. GTR is not a substitute for medical advice.</p>
|
||
<p>This page is focussed on how to find information, not how to submit it. Go <a href="/gtr/docs/submit/">here</a> for information about how to submit a description of your tests to GTR.</p>
|
||
<div class="toc">
|
||
<ul>
|
||
<li><a href="#getting-started">Getting Started</a><ul>
|
||
<li><a href="#find_test">Find tests for a condition or drug response</a></li>
|
||
<li><a href="#testname">Find tests using words in the test name</a></li>
|
||
<li><a href="#genomic">Find genomic tests</a></li>
|
||
<li><a href="#find_lab">Find a laboratory</a></li>
|
||
<li><a href="#navigate-between-genereviews-and">Navigate between GeneReviews and GTR</a><ul>
|
||
<li><a href="#find_genereviews">Find a GeneReviews record from GTR</a></li>
|
||
<li><a href="#GTRtests_GR">Find tests in GTR from a GeneReview record</a></li>
|
||
</ul>
|
||
</li>
|
||
<li><a href="#myncbi_preferences">Set preferences for your favorite labs using your My NCBI account</a></li>
|
||
<li><a href="#search_help">Search the Help documents</a></li>
|
||
</ul>
|
||
</li>
|
||
<li><a href="#details">Resources for how to use GTR's web site</a><ul>
|
||
<li><a href="#finddata">How to find data</a><ul>
|
||
<li><a href="#usecases">Common use cases</a></li>
|
||
<li><a href="#find_registered">Find all registered labs and tests</a></li>
|
||
</ul>
|
||
</li>
|
||
<li><a href="#filter">Using filters</a></li>
|
||
<li><a href="#CompareLabs">How to compare labs</a></li>
|
||
</ul>
|
||
</li>
|
||
<li><a href="#sources">Information about GTR's data sources</a></li>
|
||
</ul>
|
||
</div>
|
||
<h2 id="getting-started">Getting Started</h2>
|
||
<h3 id="find_test">Find tests for a condition or drug response</h3>
|
||
<ul>
|
||
<li>Query for a test by clicking on the <strong>Tests</strong> tab on the home page or by selecting 'Tests' from the pull-down menu to the left of the Search button on any other page,</li>
|
||
<li>Start typing the name of the condition or drug.</li>
|
||
<li>If you see the name of the disorder in which you are interested appear under the query bar, click on it, otherwise click on <strong>Search</strong><ul>
|
||
<li>If you used <strong>Search</strong>, the result page will probably list multiple disorders in the left column. Click on the one you want</li>
|
||
</ul>
|
||
</li>
|
||
<li>If there are multiple tests listed for the condition in which you are interested, you can focus on those of most interest to you by selecting from filter options in the left column, such as method used in the test, certifications of the offerer, and location of the laboratory.</li>
|
||
</ul>
|
||
<h3 id="testname">Find tests using words in the test name</h3>
|
||
<ul>
|
||
<li>Query for tests with one or more words in the test name within the <strong>Tests</strong> tab.</li>
|
||
<li>Use double quotation marks around the word(s) and an asterisk after the last word, e.g. "mitochondrial*"<span class="error">[testname]</span>" or "respiratory chain*"[testname]. Click <strong>Search</strong>.</li>
|
||
</ul>
|
||
<h3 id="genomic">Find genomic tests</h3>
|
||
<p>Submitters describe 'test targets' which are assayed in their tests, such as chromosomes, genes, proteins and analytes.
|
||
Users can find tests that assay:</p>
|
||
<ul>
|
||
<li><a href="/gtr/tests/?term=Human+genome%5BTESTTARGET%5D+">Human genome</a> (also called Whole genome, Complete genome, etc.)</li>
|
||
<li><a href="/gtr/tests/?term=Whole+exome%5BTESTTARGET%5D+">Whole exome</a></li>
|
||
<li><a href="/gtr/tests/?term=Mitochondrion%5BTESTTARGET%5D+">Mitochondrion</a> (also called Mitochondrial genome, Mitochondrial DNA, etc.)</li>
|
||
</ul>
|
||
<p>To find tests with combinations of these targets, click on the links below:</p>
|
||
<ul>
|
||
<li><a href="/gtr/tests/?term=Human+genome%5BTESTTARGET%5D+OR+Whole+exome%5BTESTTARGET%5D+">Human genome <strong>OR</strong> Whole exome</a></li>
|
||
<li><a href="/gtr/tests/?term=Human+genome%5BTESTTARGET%5D+AND+Whole+exome%5BTESTTARGET%5D+">Human genome <strong>AND</strong> Whole exome</a></li>
|
||
<li><a href="/gtr/tests/?term=Human+genome%5BTESTTARGET%5D+AND+Whole+exome%5BTESTTARGET%5D+AND+Mitochondrion%5BTESTTARGET%5D">Human genome <strong>AND</strong> Whole exome <strong>AND</strong> Mitochondrion</a></li>
|
||
<li><a href="/gtr/tests/?term=Human+genome%5BTESTTARGET%5D+OR+Whole+exome%5BTESTTARGET%5D+OR+Mitochondrion%5BTESTTARGET%5D">Human genome <strong>OR</strong> Whole exome <strong>OR</strong> Mitochondrion</a></li>
|
||
</ul>
|
||
<p>To construct your own searches using 'AND' / 'OR' (which must be capitalized), enter combinations of these indexed terms into the GTR search box:</p>
|
||
<p class="rteindent1">
|
||
Human genome[TESTTARGET]<br />
|
||
Whole exome[TESTTARGET]<br />
|
||
Mitochondrion[TESTTARGET]<br />
|
||
**EXAMPLE**: Human genome[TESTTARGET] AND Mitochondrion[TESTTARGET]
|
||
</p>
|
||
<h3 id="find_lab">Find a laboratory</h3>
|
||
<ul>
|
||
<li>Query for a laboratory by clicking on the <strong>Labs</strong> tab on the home page or by selecting <strong>'Labs'</strong> from the pull-down menu to the left of the Search button on any other page</li>
|
||
<li>You can query on any of the following: name of tests, conditions, genes, proteins, laboratories, staff, or services.</li>
|
||
<li>Start typing your query</li>
|
||
<li>If you see the value in which you are interested appear under the query bar, click on it, otherwise click on <strong>Search</strong>.</li>
|
||
<li>If there are multiple laboratories listed in the result set, you can focus on those of most interest to you by selecting from filter options in the left column, such as certifications, special services, and location of the laboratory.</li>
|
||
</ul>
|
||
<h3 id="navigate-between-genereviews-and">Navigate between GeneReviews and GTR</h3>
|
||
<h4 id="find_genereviews">Find a <em>GeneReviews</em> record from GTR</h4>
|
||
<p><em>GeneReviews<sup>®</sup></em> are expert-authored, peer-reviewed disease descriptions that apply genetic testing to the diagnosis, management, and genetic counseling of patients and families with specific inherited conditions. A full description of the resource and a complete listing of individual <em>GeneReview</em> titles can be found <a href="https://www.ncbi.nlm.nih.gov/books/NBK1116/">here</a> on NCBI's Bookshelf.</p>
|
||
<p><strong><em>NEW!</em></strong> NCBI's Bookshelf now provides <a href="/books/NBK1116/advanced/"><em>GeneReviews</em> Advanced Search</a>. You can combine searches using AND/OR/NOT for Disease name, Gene symbol, Protein name, Author, Full text, and All fields. Autocomplete dictionaries support your queries. You can also access an alphabetical list of <a href="/books/NBK132723/"><em>GeneReviews</em> authors</a> and their titles and scan <a href="/books/NBK132722/">What's New in <em>GeneReviews</em></a> for newly posted, updated, and revised Reviews. To learn more, see the <span class="title"><a href="/books/NBK133289/">GeneReviews Advanced Search Help</a>.</span></p>
|
||
<p>Integration of <em>GeneReviews</em> in GTR:</p>
|
||
<ul>
|
||
<li>Query for a <em>GeneReview</em> by clicking on the <strong><em>GeneReviews</em></strong> tab on the GTR home page to take advantage of GTR’s autocomplete dictionary, or type any desired term and click on <strong>Search</strong>.</li>
|
||
<li>Query for a <em>GeneReview</em> within NCBI’s Bookshelf by clicking on the <strong><em>GeneReviews</em></strong> link on the home page in the Clinical Resources section (right side). On the NCBI Bookshelf home of <em>GeneReviews</em>, the upper right corner contains the link to <em>GeneReviews</em> Advanced Search, described above (New!). Beneath the search bar you can also access NCBI's query features including the Save search function.</li>
|
||
<li>Find a specific condition or test, and link to a context-specific <em>GeneReview</em> from the <strong>Reviews</strong> section in the discovery panel located on the right side of the condition or test page.</li>
|
||
<li>Find a specific condition for which a <em>GeneReview</em> exists, read an excerpt, and link to the full text of the <em>GeneReview</em> by section.</li>
|
||
<li>Searches that result in a list of conditions contain hyperlinks to available <em>GeneReviews</em>. The 'Refine your search' box on the upper left side provides a filter to view records for which <em>GeneReviews</em> are available. The 'related diseases' view signals the availability of information for conditions via a set of colored chiclets, including a green 'G' for conditions that have <em>GeneReviews</em>.</li>
|
||
</ul>
|
||
<h4 id="GTRtests_GR">Find tests in GTR from a <em>GeneReview</em> record</h4>
|
||
<p>GeneReviews staff have made an editorial decision not to provide active links to GTR within the body of GeneReviews where GeneTests Laboratory Directory links were formerly located (Table 1). However, new links on the right-hand panel labeled ‘Tests in GTR by Gene’ and ‘Tests in GTR by Condition’ lead to test information in GTR, as shown in this image:</p>
|
||
<p>
|
||
<img src="/core/assets/gtr/images/GeneReviews-GTR-links.png" alt="GeneReviews GTR links" />
|
||
</p>
|
||
<h3 id="myncbi_preferences">Set preferences for your favorite labs using your My NCBI account</h3>
|
||
<p>If there are one or more laboratories you prefer to use, you can use your My NCBI account to indicate they are your preferred laboratories. This can help you to quickly identify when your preferred laboratories offer tests of interest to you.</p>
|
||
<ul>
|
||
<li>Log into your My NCBI account using NIH login or third-party login. You can also use your My NCBI account to log in, but please note that there are upcoming changes to My NCBI accounts. See the <a href="https://ncbiinsights.ncbi.nlm.nih.gov/ncbi-login-retirement-faqs/">NCBI Account Login Changes FAQs</a>.</li>
|
||
<li>On the GTR website, find the laboratory as described <a href="#find_lab">above</a>.</li>
|
||
<li>On the laboratory page, click on <strong>Add to preferred labs.</strong></li>
|
||
<li>The <a href="https://www.ncbi.nlm.nih.gov/sites/books/NBK3842/">My NCBI help document</a> provides more information about the many features enabled by My NCBI and login procedures.</li>
|
||
</ul>
|
||
<h3 id="search_help">Search the Help documents</h3>
|
||
<p>Use the All GTR tab on the home page or next to the Search box on other pages. Type your search term and click Search. The left corner of your result list will state how many hits are in GTR help. Click the link or scroll down the page to find those results.</p>
|
||
<h2 id="details">Resources for how to use GTR's web site</h2>
|
||
<p>Instructions about how to use the Genetic Testing Registry's web site are provided in several formats. We invite you to try the following:</p>
|
||
<ul>
|
||
<li>NCBI Webinar, August 11, 2014, <a href="https://www.youtube.com/watch?v=6QsdeTB9K58">Introducing Three NCBI Resources to Navigate Testing for Disease Linked Variants: MedGen, GTR and ClinVar</a></li>
|
||
<li>NSGC Webinar January 25, 2012. (<a href="/projects/gtr/docs/NSGC_Webinar_2012.pptx">download here</a>)</li>
|
||
<li><a href="https://ftp.ncbi.nlm.nih.gov/pub/factsheets/Factsheet_GTR.pdf">Fact sheet</a> (see also: <a href="https://www.ncbi.nlm.nih.gov/education/factsheets/">NCBI's Education site</a>)</li>
|
||
<li><img src="https://static.pubmed.gov/portal/portal3rc.fcgi/3441902/img/2317562" alt="GTR on YouTube" /><a href="https://www.youtube.com/playlist?list=PL7dF9e2qSW0a1b37gVee-pYFZ4AEOGvqw">GTR's video library</a> includes:<ul>
|
||
<li>Homepage and Basic Search Functions</li>
|
||
<li>Locate a Test in Under Three Minutes</li>
|
||
<li>The All GTR Search Function</li>
|
||
<li>Advanced Search Function</li>
|
||
</ul>
|
||
</li>
|
||
</ul>
|
||
<h3 id="finddata">How to find data</h3>
|
||
<h4 id="usecases">Common use cases</h4>
|
||
<p><table border="1" cellpadding="1" cellspacing="1">
|
||
<thead>
|
||
<tr>
|
||
<th scope="row">Task</th>
|
||
<th scope="col">Instructions</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
<tr>
|
||
<th scope="row">Query all content simultaneously</th>
|
||
<td>On the home page, select the <strong>All GTR</strong> tab and enter your query. You may either press enter, select a value from the term list provided, or click on <strong>Search All GTR</strong>. On any result page, enter your query in the search bar, select <strong>All GTR</strong> from the menu to its right, and execute your search.</td>
|
||
</tr>
|
||
<tr>
|
||
<th scope="row">Find labs that offer a service</th>
|
||
<td>
|
||
<p>Search for laboratory-specific content by submitting your query under the <strong>Labs</strong> choice. The following are some of the terms that are supported: <a href="/gtr/labs/?term=%22Chromosomal%20Microarray%20(CMA)%22">Chromosomal Microarray (CMA)</a>, <a href="/gtr/labs/?term=%22custom%20balanced%20chromosome%20rearrangement%20studies%22">Custom Balanced Chromosome Rearrangement Studies</a>, <a href="/gtr/labs/?term=%22dna%20banking%22">DNA banking</a>, <a href="/gtr/labs/?term=%22fish-interphase%20panels%22">FISH-Interphase Panels</a>, <a href="/gtr/labs/?term=%22Marker%20Chromosome%20Identification%22">Marker Chromosome Identification</a>, <a href="/gtr/labs/?term=%22mutation%20confirmation%22">Mutation Confirmation</a>, <a href="/gtr/labs/?term=%22rna%20banking%22">RNA banking</a>, <a href="/gtr/labs/?term=Uniparental+Disomy+(UPD)+Testing">Uniparental Disomy (UPD) Testing</a>, <a href="/gtr/labs/?term=%22whole+exome+sequencing%22">Whole exome sequencing</a>, <a href="/gtr/labs/?term=%22whole+genome+sequencing%22">Whole genome sequencing</a></p>
|
||
<p>Find all labs offering the lab services Whole exome sequencing or Whole genome sequencing <a href="https://www.ncbi.nlm.nih.gov/gtr/labs/?term=(%22whole+exome+sequencing%22%5BLABSERVICE%5D)+OR+(%22whole+genome+sequencing%22%5BLABSERVICE%5D)">here</a>. For specific tests that assay the Human genome, Whole exome, and/or Mitochondrion, see the section <a href="#genomic">Find genomic tests</a>.</p>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<th scope="row">Search on a word fragment</th>
|
||
<td>Start typing your query, and notice the terms underneath the query box that contain what you have entered. The list will be refined with each character you enter. Click on the term below that represents what you want. <strong>NOTE:</strong> If you click on <strong>Search</strong> rather than one of the terms that appears below when you have entered a word fragment, you may not get a result. The GTR supports searching word fragments only that match the beginning of a word.</td>
|
||
</tr>
|
||
<tr>
|
||
<th scope="row">Find the <a href="#CompareLabs">Compare Labs function</a></th>
|
||
<td>1. On the home page, select the <strong>Tests</strong> tab, start typing your query and select a value from the term list provided, or<br />2. Navigate to the page with a list of tests (<em>e.g.</em> by searching for a condition and clicking a link for available tests), then select a single condition from the filter menu on the left hand side of the page and click the 'Compare labs' button just beneath the list of conditions.</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
</p>
|
||
<h4 id="find_registered">Find all registered labs and tests</h4>
|
||
<ul>
|
||
<li><a href="/gtr/all/tests/?term=all%5Bsb%5D">Click</a><a href="https://www.ncbi.nlm.nih.gov/gtr/all/tests/?term=all%5Bsb%5D">here</a> to find all laboratories in GTR and all registered tests.</li>
|
||
<li>If you click on the Laboratories result, you can then apply filters as well as access the searchable test menu and other details of these labs.</li>
|
||
<li>If you click on the Tests result, you can then apply filters as well as access the details of these registered tests.</li>
|
||
<li>Note that some registered labs may not have any registered tests. Labs may be in the process of submitting information to GTR, or may have services (such as whole genome sequencing) that are not yet in scope as fully registered tests.</li>
|
||
</ul>
|
||
<h3 id="filter">Using filters</h3>
|
||
<p>Filtering of GTR search results is described in the GTR <a href="https://ftp.ncbi.nlm.nih.gov/pub/factsheets/Factsheet_GTR.pdf">Fact sheet</a> and the YouTube video <a href="https://www.youtube.com/watch?v=HeS4Jvdy194&list=PL1C4A2AFF811F6F0B&index=5">Locate a Test in Under Three Minutes</a>. When your search result is a list, you can use various filters to narrow the list.</p>
|
||
<ul>
|
||
<li>List of conditions: Refine your search by limiting the results to conditions for which OMIM, <em>GeneReviews</em>, or GTR Tests are available.</li>
|
||
<li>List of tests:<ul>
|
||
<li>Select a condition in the upper left to narrow the list. The selection does not transfer to the next page.</li>
|
||
<li>Filter by Test type (clinical or research), Test purpose, Test method, Test services (Carrier testing or Prenatal testing), Lab certification, and Lab location.</li>
|
||
</ul>
|
||
</li>
|
||
<li>List of labs: Filter by Lab certification, Test services (Carrier testing or Prenatal testing), and Lab location.</li>
|
||
</ul>
|
||
<h3 id="CompareLabs">How to compare labs</h3>
|
||
<p>The Compare labs function facilitates the review of laboratories offering tests for a specific condition. This page is analogous to the 'grid' in the GeneTests Laboratory Directory. Each row corresponds to a laboratory and contains information on the test methods used by the specific test(s) the lab offers for the condition selected. Methodologies are displayed horizontally as colored ‘chiclets’ with a letter and a description beneath. Chiclets are vertically aligned allowing the user to scan the page for combinations of methods to plan their testing strategy. Test-specific services for carrier testing and prenatal testing are also represented by chiclets. Laboratories can be sorted alphabetically or selected through checkboxes. Filters for Test method, Test services, Lab certification and Lab location are available to help narrow search results and ease selection of the best laboratory.</p>
|
||
<p>Please refer to the <a href="#usecases">Common use cases</a> table above for ways to find the Compare labs function.</p>
|
||
<p>Please note the following features of this page:</p>
|
||
<ul>
|
||
<li>If only one laboratory provides one or more tests for the highlighted condition, only one row (lab) will display as there are no other labs for comparison.</li>
|
||
<li>Laboratories that offer research tests which satisfy the search criteria but do not report information about methods will display without methodology chiclets.</li>
|
||
<li>If your initial search was comprised of a condition name AND a gene, the number of tests in the test list page may be different from the number of labs displaying in the Compare labs page. This is because when you click on the disorder name and the Compare Labs button, the page displays a list of labs that provide tests for the highlighted condition regardless of gene.</li>
|
||
</ul>
|
||
<h2 id="sources">Information about GTR's data sources</h2>
|
||
<p>Please refer to the 2013 publication in <em>Nucleic Acids Research</em>, "The NIH genetic testing registry: a new, centralized database of genetic tests to enable access to comprehensive information and improve transparency". Links can be found <a href="/gtr/docs/about/#gtrrefs">here</a>.</p>
|
||
<p>
|
||
<span id="shared-content-1"></span>
|
||
</p>
|
||
</div>
|
||
<hr />
|
||
<h2>The GTR Submission Process</h2>
|
||
<div>
|
||
<p><span class="br_text"><a href="/gtr/">GTR Home</a> </span> <span class="br_sep"> > </span> <span class="br_text"> <a href="/gtr/">GTR Help</a> </span> <span class="br_sep"> > </span> <span class="br_text"><a href="/gtr/docs/submission/">Submission</a></span> <span class="br_sep"> > </span> <span class="br_text">Submission Overview</span></p>
|
||
<div class="fl_right">
|
||
<div><div><b>OMB NO: 0925-0651</b></div><div><b>EXPIRATION DATE: 01/31/2025</b>*</div><div><a href="/gtr/docs/omb_approval/">Burden Statement</a></div><div style="font-size: 0.9em;">* Renewal in process</div></div>
|
||
</div>
|
||
<div class="title_sec">
|
||
<h1 id="title_sec">The GTR Submission Process</h1>
|
||
</div>
|
||
<p>This document is an overview of the methods by which information can be registered in the GTR. Detailed information is provided in specific pages that can be accessed from the navigation menu above. </p>
|
||
<p>You can access a webinar about registering with GTR which will help you determine a submission strategy for your laboratory <a href="/gtr/docs/outreach/#ampwebinar">here</a>.</p>
|
||
<p>Table of contents</p>
|
||
<div class="toc">
|
||
<ul>
|
||
<li><a href="#tests">What constitutes a test in the GTR?</a></li>
|
||
<li><a href="#types">What types of tests are currently accepted?</a></li>
|
||
<li><a href="#data">What data should be collected before submitting?</a></li>
|
||
<li><a href="#submission">Submission scenarios</a><ul>
|
||
<li><a href="#scenarios">Scenarios for test submissions</a></li>
|
||
</ul>
|
||
</li>
|
||
<li><a href="#start">How do I get started?</a></li>
|
||
<li><a href="#who">Who is authorized to submit?</a></li>
|
||
<li><a href="#overview">Overview of the steps to register labs and tests</a></li>
|
||
<li><a href="#conventions">Conventions used in the interactive submission interface</a></li>
|
||
<li><a href="#homepage">Your submission home page</a></li>
|
||
<li><a href="#adding-tests">Adding tests</a></li>
|
||
<li><a href="#update">How to manage your records in the GTR</a></li>
|
||
<li><a href="#data_use">How are my data used by NCBI?</a></li>
|
||
<li><a href="#gtr-api-submissions">GTR API Submissions</a></li>
|
||
</ul>
|
||
</div>
|
||
<h2 id="tests">What constitutes a test in the GTR?</h2>
|
||
<p>A clinical test in the GTR is defined as the equivalent of a laboratory order code. The definition of a clinical genetic test in the GTR may be found <a href="/gtr/docs/about/">here</a>.</p>
|
||
<p>A research test in the GTR is defined as <span>a test that is performed for the purpose of contributing to generalizable knowledge or for a laboratory to generate data in order to make technical improvements to a test.</span></p>
|
||
<h2 id="types">What types of tests are currently accepted?</h2>
|
||
<p>GTR is now accepting registration of clinical and research tests. Tests may be registered for Mendelian disorders, somatic conditions (such as cancer), complex tests and arrays, and pharmacogenetic tests, as well as for microbe tests that affect human health and disease. These tests may include multiple methods and may include multiple major method categories such as biochemical, cytogenetic, and molecular tests.</p>
|
||
<p>GTR is not currently accepting registration of direct-to-consumer tests. </p>
|
||
<p>Tests that are general and not specific to a particular condition, set of conditions or genes, or chromosomal structures are categorized by GTR as <a href="/gtr/docs/submit/lab_info/#services">Laboratory services</a> and will be entered in the laboratory record. One such example is Preimplantation Genetic Diagnosis (PGD). Whole exome sequencing and whole genome sequencing are considered to be tests in GTR, but are not yet in scope as fully described tests. These may now be entered as Laboratory services, with the opportunity to provide information in a comment box, and at a later phase they will be registered as tests.</p>
|
||
<p>Tests which are performed entirely at an outside lab/facility (send-outs) should not be registered in GTR. 'Outside' means a lab/facility that is not covered by your lab's CLIA certification, even if both labs have the same parent organization.</p>
|
||
<h2 id="data">What data should be collected before submitting?</h2>
|
||
<p>The list of data elements that may be submitted is provided in GTR's Data Dictionary (<a href="https://ftp.ncbi.nlm.nih.gov/pub/GTR/documentation/GTRFieldDefinitions.pdf">pdf</a> or <a href="https://ftp.ncbi.nlm.nih.gov/pub/GTR/documentation/GTRFieldDefinitions.docx">Word</a>. These elements are categorized as minimal, recommended, and optional. Minimal fields are required, and submission will fail if not supplied. Recommended elements are not required, and can be skipped in the submission process. The web interface will, however, report 'not provided' for blank recommended fields. Optional fields are not required, and can be skipped in the submission process. The web interface will not display optional fields left blank.</p>
|
||
<h2 id="submission">Submission scenarios</h2>
|
||
<p>Registration in GTR is divided into two major categories:</p>
|
||
<ol>
|
||
<li>
|
||
<p>Laboratory registration </p>
|
||
<ul>
|
||
<li>Laboratory and personnel data that are applicable to all tests are entered once. </li>
|
||
<li>All laboratory registrations are performed through the interactive web-based submission user interface.</li>
|
||
<li>The 'Default parameters' tab enables the entry of information that is shared by most tests offered by the lab. Information supplied in this tab will pre-populate test records for later review and editing, potentially saving keystrokes.</li>
|
||
</ul>
|
||
</li>
|
||
<li>
|
||
<p>Test registration </p>
|
||
<ul>
|
||
<li>Submission of test-specific information, where a clinical test is defined as the equivalent of an order code and a research test is either a component of a research study or a test undergoing technical improvements.</li>
|
||
</ul>
|
||
</li>
|
||
</ol>
|
||
<h3 id="scenarios">Scenarios for test submissions</h3>
|
||
<ol>
|
||
<li>
|
||
<p><em>Completely interactive</em>:<br />
|
||
The submitter enters and reviews information via web-based forms. New clinical and research tests can be created by any lab registered in GTR.</p>
|
||
</li>
|
||
<li>
|
||
<p><em>Automatic submission using the GTR test submission template with complete set of fields (for clinical tests only):</em><br />
|
||
The submitter downloads a test submission template file from their lab overview page or or from the <a href="https://ftp.ncbi.nlm.nih.gov/pub/GTR/submission_templates/" class="file">FTP site</a> which supports entry of all test fields. The submitter completes the spreadsheet for each test the lab wishes to register. Once successfully uploaded, the tests are automatically registered. Read more about this mode of submission <a href="/gtr/docs/fulltest/">for clinical genetic tests</a> and <a href="/gtr/docs/microbe_fulltest/">clinical microbe tests</a>.</p>
|
||
</li>
|
||
<li>
|
||
<p><em>Semi-automatic submission using the GTR test submission template with minimal set of fields (for clinical genetic tests only):</em><br />
|
||
The submitter downloads a test submission template file from their lab overview page or from the <a href="https://ftp.ncbi.nlm.nih.gov/pub/GTR/submission_templates/" class="file">FTP site</a> which supports entry of all required test fields and certain recommended fields. <br />
|
||
The submitter completes the spreadsheet for each test the lab wishes to register. The submitter uses the interactive submission interface to review each record seeded by the spreadsheet, enters information as desired for any recommended and optional fields not supported by the spreadsheet, and submits each test. Read more about this mode of submission <a href="/gtr/docs/submit/semiautomatic/">here</a>.</p>
|
||
</li>
|
||
<li>
|
||
<p><em>Completely automatic:</em><br />
|
||
GTR now supports submission of clinical tests, both clinical genetic tests and clinical microbe tests, via a RESTful (REpresentational State Transfer) API (Application Programming Interface). Data submission and the status response are in JSON (JavaScript Object Notation) data exchange format. The <a href="/gtr/docs/gtr_api_http/">documentation</a> includes the submission and response schemas, as well as helpful information to guide submitters. <a href="mailto:tkt-tryhd@ncbi.nlm.nih.gov?subject=Create%20a%20GTR%20API%20service%20account">Contact GTR staff</a> to create a service account and get started.</p>
|
||
</li>
|
||
</ol>
|
||
<h2 id="start">How do I get started?</h2>
|
||
<p>The GTR help site includes multiple documents about registering laboratories and tests, with some specific and distinctive aspects of the submission/update process. The navigation menu at the top of the page provides menus from which to select the page specific to your topic of choice. Details about each tab are provided in the <a href="#list">table below</a>.</p>
|
||
<p>Laboratory information must be entered first. New laboratories have a wait period of 2-3 business days for GTR staff to review the laboratory record. Test information laboratory can be entered only after the laboratory has been registered in the GTR.</p>
|
||
<p>To determine whether your Web browser is supported to run NCBI web applications including data submission, use this link: <a href="/guide/browsers">Browser Advice for NCBI Web Pages</a></p>
|
||
<h2 id="who">Who is authorized to submit?</h2>
|
||
<p>Initially one person per lab can submit lab and test data to GTR.</p>
|
||
<p>We have enabled submissions from multiple individuals from a single lab in a function called <a href="/gtr/docs/manage_permissions/">Groups</a>. Please contact us if this is a feature you would like to use.</p>
|
||
<h2 id="overview">Overview of the steps to register labs and tests</h2>
|
||
<ol>
|
||
<li>Go to the <a href="https://submit.ncbi.nlm.nih.gov/subs/gtr">GTR Submission user interface</a></li>
|
||
<li><a href="/gtr/docs/login/">Login</a> to the GTR submission site</li>
|
||
<li><a href="/gtr/docs/submit/add_lab/">Create a lab record</a>: log in to the submission interface and proceed through the steps below, then click the Add a new lab button. Once you submit your lab, you will receive an email informing you your information was submitted. GTR staff will review the information and must approve your lab before you can register your tests. This process may take 2-3 business days. We may contact the lab if more information is needed. When your lab is approved, you will receive a notification email informing you that you can register your tests.</li>
|
||
<li>Once you have an active laboratory record, create new test records, review the information and submit the records interactively.</li>
|
||
<li>If you have many clinical tests to register, you can consider submitting data to GTR in bulk via the full test submission spreadsheet.</li>
|
||
</ol>
|
||
<h2 id="conventions">Conventions used in the interactive submission interface</h2>
|
||
<ul>
|
||
<li><strong>Orange asterisk (<span>*</span>):</strong> minimal field, the submission will fail if the data are not supplied</li>
|
||
<li><strong>?(<img src="/core/icons/help.png" alt="help icon" />) icon:</strong> hover over icon to display an instruction tip</li>
|
||
<li><strong>Information will display on the public site exactly as it is entered</strong>, unless otherwise noted. Therefore, please note carefully the recommended format for fields and be careful to spell out information the way you want the public to see it.</li>
|
||
<li><strong>Phone numbers</strong> require a specific format (<em>e.g.</em> US phone numbers should be entered as 123-456-7890 ext. 1234).</li>
|
||
<li><strong>URLs (websites)</strong> must begin with the protocol (<em>e.g</em>. http://, https://, or ftp://).</li>
|
||
</ul>
|
||
<h2 id="homepage">Your submission home page</h2>
|
||
<p>When you have established your account, you will be presented with your <a href="https://submit.ncbi.nlm.nih.gov/subs/gtr">GTR Submission home page</a>. This page supports the functions of adding, deleting and editing data. When you have completed a submission, it also displays what you have submitted and the status of each submission. For example, when you login to the GTR submission interface for the first time and accept the code of conduct, this is what you will see. Note the link to these help documents, and the address to contact GTR staff by email.</p>
|
||
<p>Your name anchors the link to your profile page. That profile page also has a submissions tab where you can review your submissions.</p>
|
||
<p>
|
||
<img src="/core/assets/gtr/images/submission_home_new.png" alt="Display of a submission home page for a new registrant" />
|
||
</p>
|
||
<p>Once you have started to process some information, the page will provide a summary, separated by laboratory, of the submission you have initiated. You can click on the link (<strong>Review lab submission</strong> or <strong>Edit this lab</strong>, the latter if the lab record has not been submitted) to view / edit the lab record. Please <a href="mailto:tkt-tryhd@ncbi.nlm.nih.gov?subject=Question%20about%20deleting%20lab%20or%20test%20data%20from%20GTR">contact GTR staff</a> if you need to delete your laboratory from the GTR.</p>
|
||
<p>
|
||
<img src="/core/assets/gtr/images/submission_home_new2.png" alt="Display of a submission home page after adding a lab" />
|
||
</p>
|
||
<p>Once a lab has submitted test information, you can view your tests using the <a href="/gtr/docs/test_management/">test management page</a>.</p>
|
||
<h2 add_tests="add_tests" id="adding-tests">Adding tests</h2>
|
||
<p>Detailed instructions are shown on the following pages: </p>
|
||
<ul>
|
||
<li>Using the submission wizard<ul>
|
||
<li>Genetic tests <ul>
|
||
<li><a href="/gtr/docs/submit/add_test">Clinical</a></li>
|
||
<li><a href="/gtr/docs/submit/add_research">Research</a></li>
|
||
</ul>
|
||
</li>
|
||
<li>Microbe tests<ul>
|
||
<li><a href="/gtr/docs/submit/add_microbe_clinical">Clinical</a></li>
|
||
<li><a href="/gtr/docs/submit/add_microbe_research">Research</a></li>
|
||
</ul>
|
||
</li>
|
||
</ul>
|
||
</li>
|
||
<li>Using the spreadsheet templates<ul>
|
||
<li>Genetic tests (clinical only)<ul>
|
||
<li><a href="/gtr/docs/fulltest">All clinical fields spreadsheet submission</a>; once the spreadsheet is uploaded, test submission is automatic; we encourage submitters to use this spreadsheet </li>
|
||
<li><a href="/gtr/docs/submit/semiautomatic">Minimal clinical fields spreadsheet submission</a>; note that this method is semiautomated; the submitter will need to submit each test manually using the submission wizard once the spreadsheet has been uploaded and processed.</li>
|
||
</ul>
|
||
</li>
|
||
<li>Microbe tests (clinical only) <ul>
|
||
<li><a href="/gtr/docs/microbe_fulltest">All clinical fields spreadsheet submission</a></li>
|
||
</ul>
|
||
</li>
|
||
</ul>
|
||
</li>
|
||
</ul>
|
||
<h2 id="update">How to manage your records in the GTR</h2>
|
||
<p>See <a href="/gtr/docs/manage_records/">detailed instructions</a> on how to update, delete, copy and edit GTR records.</p>
|
||
<h2 id="data_use">How are my data used by NCBI?</h2>
|
||
<p>The data you submit will be displayed publicly in GTR and may be reflected in other NCBI resources such as <a href="/medgen/">MedGen</a> and <a href="/clinvar/">ClinVar</a>. Exceptions to submitted information that will be displayed publicly, such as private comments to GTR staff and private contact information are marked in the submission user interface and in the help documentation. Please do not submit any data that you consider to be proprietary.</p>
|
||
<p>When your submission includes information about the alleles you test for a disorder, your data will be accessioned in ClinVar as well (<a href="https://www.ncbi.nlm.nih.gov/clinvar">http://www.ncbi.nlm.nih.gov/clinvar</a>). We therefore encourage you to provide information about the clinical significance of each allele. By combining efforts, GTR and ClinVar hope to improve access to information about medically important variation.</p>
|
||
<h2 id="gtr-api-submissions">GTR API Submissions</h2>
|
||
<p>For fully automated submission of GTR clinical tests, both genetic tests and microbe tests, see <a href="/gtr/docs/gtr_api_http/">GTR Submission API</a>.</p>
|
||
<p>
|
||
<span id="shared-content-1"></span>
|
||
</p>
|
||
</div>
|
||
<hr />
|
||
<h2>How to update your records in the GTR</h2>
|
||
<div>
|
||
<h1 id="update">How to update your records in the GTR</h1>
|
||
<div class="toc">
|
||
<ul>
|
||
<li><a href="#login">Login</a></li>
|
||
<li><a href="#updating-laboratory-records">Updating laboratory records</a><ul>
|
||
<li><a href="#updating-a-laboratory-record-whi">Updating a laboratory record which has already been submitted</a></li>
|
||
<li><a href="#updating-a-lab-record-for-which-">Updating a lab record for which the submission is still in process</a></li>
|
||
</ul>
|
||
</li>
|
||
<li><a href="#tests">Updating test records</a></li>
|
||
<li><a href="#alternate-access-to-test-and-lab">Alternate access to test and lab submissions</a></li>
|
||
</ul>
|
||
</div>
|
||
<p>Follow these steps to update a record in the GTR:</p>
|
||
<h2 id="login">Login</h2>
|
||
<p>See instructions <a href="/gtr/docs/login/">here</a> to login to the GTR Submission Portal.</p>
|
||
<h2 id="updating-laboratory-records">Updating laboratory records</h2>
|
||
<h3 id="updating-a-laboratory-record-whi">Updating a laboratory record which has already been submitted</h3>
|
||
<p>From the home page for your lab, in the section Laboratory Information, click on the button 'Update laboratory information' to access your laboratory record. The laboratory name at the top of the submission home page and the menu item 'Laboratory information' also link to this page.</p>
|
||
<p>
|
||
<img src="/core/assets/gtr/images/SP_home_lab_info.jpg" alt="Link to review or edit lab records" />
|
||
</p>
|
||
<p>Each link will take you to the <a href="/gtr/docs/submit/lab_overview/">overview</a> report of your submission, where you can review your data and verify current content. If you wish to make an update, click the <em>Edit</em> button.</p>
|
||
<p>
|
||
<img src="/core/assets/gtr/images/edit_lab.png" alt="Example of the edit function for a lab" />
|
||
</p>
|
||
<p>All tabs are available for navigation. Go to the sections where you need to make changes by clicking on the respective tab. Once you have made the changes, be certain to click on <em>Save and Continue</em> at the bottom of the form when you are done. On the lab overview page, be sure to click the <em>Submit</em> button.</p>
|
||
<h3 id="updating-a-lab-record-for-which-">Updating a lab record for which the submission is still in process</h3>
|
||
<p>If you have not completed a submission, click on <em>Edit lab Submission</em> from the home page in Submission Portal. The link will lead to the page in the record where the submission was last updated. In the example below, the processing of the record was stopped at the <em>Lab information</em> stage.</p>
|
||
<p>
|
||
<img src="/core/assets/gtr/images/edit_unprocessed.png" alt="Editing an unprocess submission" />
|
||
</p>
|
||
<p>Go to the sections where you need to make changes by clicking on the respective tab. Once you have made the changes, be certain to click on <em>Save and Continue</em> at the bottom of the form when you are done. On the lab overview page, be sure to click the <em>Submit</em> button.</p>
|
||
<h2 id="tests">Updating test records</h2>
|
||
<p>From your homepage in the GTR submission site (see <a href="/gtr/docs/login/">login</a> instructions), you will see the section 'Tests in this lab'. </p>
|
||
<p>Included file '/gtr/docs/lab_tests_include.md' not found</p>
|
||
<h2 id="alternate-access-to-test-and-lab">Alternate access to test and lab submissions</h2>
|
||
<p>Click <em>My Profile</em> located in the navigation menu of the submission homepage. Click on <em>My Submissions</em>. In the table below, you will see a list of your submissions. You can click on the submission ID to go directly to the test page.</p>
|
||
<p>
|
||
<img src="/core/assets/gtr/images/my_profile_submissions_link.png" alt="My profile link to view submissions" />
|
||
</p>
|
||
<p>
|
||
<span id="shared-content-1"></span>
|
||
</p>
|
||
</div>
|
||
<hr />
|
||
<h2>How to create URLs that link to GTR</h2>
|
||
<div>
|
||
<h1 id="how-to-create-urls-that-link-to-">How to create URLs that link to GTR</h1>
|
||
<p>GTR provides multiple views of data. URLs can be constructed that return the equivalent of searches of All GTR, or searches restricted by Tests, Conditions/Phenotypes, Genes, or Labs. Set queries can be used to deliver subsets of GTR content, such as all laboratories and tests that are registered in the GTR.</p>
|
||
<p>The URL is constructed from the following base:</p>
|
||
<p>http://www.ncbi.nlm.nih.gov/gtr/</p>
|
||
<p>with additions as tabulated below.</p>
|
||
<p><table border="1" cellpadding="1" cellspacing="1">
|
||
<thead>
|
||
<tr>
|
||
<th scope="col">Category</th>
|
||
<th scope="col">Type</th>
|
||
<th scope="col">Qualifier</th>
|
||
<th scope="col">Example</th>
|
||
</tr>
|
||
</thead>
|
||
<caption>How to build links to GTR</caption>
|
||
<tbody>
|
||
<tr>
|
||
<td>All GTR</td>
|
||
<td>Any word or phrase</td>
|
||
<td>?term=</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/?term=warfarin">http://www.ncbi.nlm.nih.gov/gtr/?term=warfarin</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A MIM number</td>
|
||
<td>?term=123456[mim]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/?term=100800[mim]">http://www.ncbi.nlm.nih.gov/gtr/?term=100800[mim]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A gene symbol</td>
|
||
<td>?term=GLA[gene]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/?term=GLA[gene]">http://www.ncbi.nlm.nih.gov/gtr/?term=GLA[gene]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A condition identifier<a href="#condition"><sup>1</sup></a></td>
|
||
<td>?term=C0002986[discui]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/?term=C0002986[discui]">http://www.ncbi.nlm.nih.gov/gtr/?term=C0002986[discui]</a>
|
||
</td>
|
||
</tr>
|
||
<tr></tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A laboratory name</td>
|
||
<td>?term=name[orgname]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/?term=genedx[orgname]">http://www.ncbi.nlm.nih.gov/gtr/?term=genedx[orgname]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>Tests</td>
|
||
<td>Any word or phrase</td>
|
||
<td>tests/?term=panel</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/tests/?term=panel">http://www.ncbi.nlm.nih.gov/gtr/tests/?term=panel</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A GTR accession</td>
|
||
<td>tests/GTR123456789</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/tests/GTR000501760/">http://www.ncbi.nlm.nih.gov/gtr/tests/GTR000501760/</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A gene symbol</td>
|
||
<td>tests/?term=GLA[gene]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/tests/?term=GLA[gene]">http://www.ncbi.nlm.nih.gov/gtr/tests/?term=GLA[gene]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A test name</td>
|
||
<td>tests/?term=mitochondri*[testname]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/tests/?term=mitochondri*[testname]">http://www.ncbi.nlm.nih.gov/gtr/tests/?term=mitochondri*[testname]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A laboratory name</td>
|
||
<td>tests/?term=name[orgname]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/tests/?term=genedx[orgname]">http://www.ncbi.nlm.nih.gov/gtr/tests/?term=genedx[orgname]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A director's name</td>
|
||
<td>tests/?term=name[director]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/tests/?term=bale[director]">http://www.ncbi.nlm.nih.gov/gtr/tests/?term=bale[director]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A name of a city</td>
|
||
<td>tests/?term=name[city]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/tests/?term=chicago[city]">http://www.ncbi.nlm.nih.gov/gtr/tests/?term=chicago[city]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A condition identifier<sup><a href="#condition">1</a></sup></td>
|
||
<td>tests/?term=C0002986[discui]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/tests/?term=C0002986[discui]">http://www.ncbi.nlm.nih.gov/gtr/tests/?term=C0002986[discui]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A MIM number</td>
|
||
<td>tests/?term=100800[mim]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/tests/?term=100800[mim]">http://www.ncbi.nlm.nih.gov/gtr/tests/?term=100800[mim]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>Conditions</td>
|
||
<td>Any word or phrase</td>
|
||
<td>conditions/?term=deficiency</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/conditions/?term=deficiency">http://www.ncbi.nlm.nih.gov/gtr/conditions/?term=deficiency</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A gene symbol</td>
|
||
<td>conditions/?term=GLA[gene]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/conditions/?term=GLA[gene]">http://www.ncbi.nlm.nih.gov/gtr/conditions/?term=GLA[gene]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A condition identifier</td>
|
||
<td>conditions/C0002986</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/conditions/C0002986">http://www.ncbi.nlm.nih.gov/gtr/conditions/C0002986</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A MIM number</td>
|
||
<td>conditions/?term=100800[mim]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/conditions/?term=100800[mim]">http://www.ncbi.nlm.nih.gov/gtr/conditions/?term=100800[mim]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A drug name</td>
|
||
<td>conditions/?term=name</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/conditions/?term=warfarin">http://www.ncbi.nlm.nih.gov/gtr/conditions/?term=warfarin</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>Genes</td>
|
||
<td>Any word or phrase of a name</td>
|
||
<td>genes/?term=kinase</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/genes/?term=kinase">http://www.ncbi.nlm.nih.gov/gtr/genes/?term=kinase</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A GeneID</td>
|
||
<td>genes/?term=id[uid]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/genes/?term=2[uid]">http://www.ncbi.nlm.nih.gov/gtr/genes/?term=2[uid]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A MIM number</td>
|
||
<td>genes/?term=123456[mim]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/genes/?term=100800[mim]">http://www.ncbi.nlm.nih.gov/gtr/genes/?term=100800[mim]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>Labs</td>
|
||
<td>Any word or phrase</td>
|
||
<td>labs/?term=laboratory</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/labs/?term=laboratory">http://www.ncbi.nlm.nih.gov/gtr/labs/?term=laboratory</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A laboratory name</td>
|
||
<td>labs/?term=cytogenetics[orgname]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/labs/?term=cytogenetics[orgname]">http://www.ncbi.nlm.nih.gov/gtr/labs/?term=cytogenetics[orgname]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A director's name</td>
|
||
<td>labs/?term=name[director]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/labs/?term=morton[director]">http://www.ncbi.nlm.nih.gov/gtr/labs/?term=morton[director]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A staff member's name</td>
|
||
<td>labs/?term=name[staff]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/labs/?term=smith[staff]">http://www.ncbi.nlm.nih.gov/gtr/labs/?term=smith[staff]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A service</td>
|
||
<td>labs/?term=name[labservice]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/labs/?term=chromosom*[labservice]">http://www.ncbi.nlm.nih.gov/gtr/labs/?term=chromosom*[labservice]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A condition name</td>
|
||
<td>labs/?term=name[disname]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/labs/?term=colorectal[disname]">http://www.ncbi.nlm.nih.gov/gtr/labs/?term=colorectal[disname]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td> </td>
|
||
<td>A city</td>
|
||
<td>labs/?term=name[city]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/labs/?term=chicago[city]">http://www.ncbi.nlm.nih.gov/gtr/labs/?term=chicago[city]</a>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>Set Queries</td>
|
||
<td>All registered labs and tests</td>
|
||
<td>?term="src gtr"[Properties]</td>
|
||
<td>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gtr/?term=%22src%20gtr%22[Properties]">http://www.ncbi.nlm.nih.gov/gtr/?term=%22src%20gtr%22[Properties]</a>
|
||
</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
<span id="condition"></span><sup>1</sup>GTR uses identifiers for conditions grouped into concepts by the <a href="http://www.nlm.nih.gov/research/umls/">Unified Medical Language System (UMLS)</a> and used by <a href="/medgen/">MedGen</a>.</p>
|
||
<p>
|
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<span id="shared-content-1"></span>
|
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</p>
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<noscript><img alt="" src="/stat?jsdisabled=true&ncbi_app=gtr&ncbi_db=&ncbi_pdid=static&ncbi_phid=CE8B21BC7C8B60210000000000C600AB" /></noscript>
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<li class="list-inline-item"><a href="https://www.facebook.com/nationallibraryofmedicine" aria-label="Facebook" rel="noopener noreferrer" target="_blank">
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<title>Facebook</title>
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<li class="list-inline-item"><a href="https://www.youtube.com/user/NLMNIH" aria-label="Youtube" target="_blank" rel="noopener noreferrer">
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<div class="col-lg-3 col-12">
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<p class="address_footer text-white">National Library of Medicine<br />
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<a href="https://www.google.com/maps/place/8600+Rockville+Pike,+Bethesda,+MD+20894/@38.9959508,-77.101021,17z/data=!3m1!4b1!4m5!3m4!1s0x89b7c95e25765ddb:0x19156f88b27635b8!8m2!3d38.9959508!4d-77.0988323" class="text-white" target="_blank" rel="noopener noreferrer">8600 Rockville Pike<br />
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Bethesda, MD 20894</a></p>
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<div class="col-lg-3 col-12 centered-lg">
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<p><a href="https://www.nlm.nih.gov/web_policies.html" class="text-white">Web Policies</a><br />
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<a href="https://www.nih.gov/institutes-nih/nih-office-director/office-communications-public-liaison/freedom-information-act-office" class="text-white">FOIA</a><br />
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<p><a class="supportLink text-white" href="https://support.nlm.nih.gov/">Help</a><br />
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<a href="https://www.nlm.nih.gov/accessibility.html" class="text-white">Accessibility</a><br />
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<a href="https://www.nlm.nih.gov/careers/careers.html" class="text-white">Careers</a></p>
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<a class="text-white" href="https://www.nih.gov/">NIH</a>
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