1617 lines
46 KiB
Text
1617 lines
46 KiB
Text
|
|
<!DOCTYPE html>
|
|
<html>
|
|
<head>
|
|
<title>Mouse Genome Assembly GRCm39 - Genome Reference Consortium</title>
|
|
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
|
<meta name="ncbi_app" content="grc" />
|
|
<meta name="ncbi_db" content="none" />
|
|
<meta name="ncbi_pdid" content="screen_default" />
|
|
<meta name="ncbi_pagename" content="assemblyDataPage" />
|
|
<meta name="ncbi_pagetitle" content="Mouse Genome Assembly GRCm39" />
|
|
|
|
<link rel="stylesheet" type="text/css" href="/grc/static/grc/css/grc.css" />
|
|
<style>
|
|
#menu ul#primary a#dataMenuItem {
|
|
border: 1px solid #666;
|
|
border-bottom: none;
|
|
background: #333;
|
|
padding-bottom: 6px;
|
|
margin-top: 0;
|
|
color: #ff9933;
|
|
text-decoration: none;
|
|
}
|
|
|
|
|
|
#menu ul#secondary li a#data-assemblyDataMenuItem {
|
|
color: #EFEFEF;
|
|
}
|
|
</style>
|
|
|
|
<link rel="stylesheet" type="text/css" href="/core/jig/1.14.8/css/jig.min.css" />
|
|
|
|
<script type="text/javascript" src="/core/jig/1.14.8/js/jig.min.js"></script>
|
|
|
|
<script type="text/javascript" src="/grc/static/grc/js/grc.js"></script>
|
|
|
|
|
|
</head>
|
|
<body>
|
|
<noscript>
|
|
<p>
|
|
<b>Warning:</b> this web site requires JavaScript to function. <a href="/guide/browsers#js_settings">more...</a>
|
|
</p>
|
|
</noscript>
|
|
<div id="header-container">
|
|
<a href="/grc">
|
|
<div id="header">
|
|
<img alt="GRC logo" src="/grc/static/grc/img/GRC_logo_reasonably_small.png" /><img src="/grc/static/grc/img/TitleBanner.png" alt="Genome Reference Consortium" /></a>
|
|
</div>
|
|
</div>
|
|
<div id="page">
|
|
<a id="skipnav" href="#main">Skip navigation and go to main content</a>
|
|
<div id="menu">
|
|
<ul id="primary">
|
|
<li><a href="/grc" title="GRC home" id="homeMenuItem">GRC Home</a></li>
|
|
<li><a href="/grc/data" title="Data" id="dataMenuItem">Data</a>
|
|
|
|
<ul id="secondary">
|
|
<li><a href="/grc/mouse" id="organismOverviewMenuItem">Mouse Overview</a></li>
|
|
<li><a href="/grc/mouse/issues" id="issueListMenuItem">Mouse Genome Issues</a></li>
|
|
<li><a href="/grc/mouse/data" id="assemblyDataMenuItem">Mouse Assembly Data</a></li>
|
|
<!-- <li><a href="/mouse/report-an-issue">Report a Problem</a></li> -->
|
|
</ul>
|
|
|
|
|
|
</li>
|
|
<li><a href="/grc/help" title="Information and help" id="helpMenuItem">Help</a></li>
|
|
<li><a href="/grc/report-an-issue" title="Report a problem" id="reportAnIssueMenuItem">Report an Issue</a></li>
|
|
<li><a href="/grc/contact-us" title="contact us" id="contactUsMenuItem">Contact Us</a></li>
|
|
<li><a href="/grc/credits" title="credits" id="creditsMenuItem">Credits</a></li>
|
|
|
|
<li><a href="/projects/genome/assembly/grc/curation/mouse" title="Curators only, authentication required" id="curatorsOnlyMenuItem">Curators Only</a></li>
|
|
|
|
</ul>
|
|
</div><!--end menu-->
|
|
<div id="main"><a name="main"></a>
|
|
<div id="assemblyDataPage">
|
|
<div id="contents" style="overflow:hidden;">
|
|
|
|
|
|
<h1>Mouse Genome Assembly GRCm39</h1>
|
|
<p>
|
|
Information on tiling path files (TPFs) for the
|
|
assembly is available at
|
|
<a href="/grc/tpf">TPF Overview</a>.
|
|
</p>
|
|
|
|
|
|
Other assembly versions:
|
|
<select id="assembly_select" name="assembly_select">
|
|
<option>Select one</option>
|
|
|
|
|
|
|
|
|
|
<option value="GRCm38.p6">GRCm38.p6</option>
|
|
|
|
|
|
|
|
<option value="GRCm38.p5">GRCm38.p5</option>
|
|
|
|
|
|
|
|
<option value="GRCm38.p4">GRCm38.p4</option>
|
|
|
|
|
|
|
|
<option value="GRCm38.p3">GRCm38.p3</option>
|
|
|
|
|
|
|
|
<option value="GRCm38.p2">GRCm38.p2</option>
|
|
|
|
|
|
|
|
<option value="GRCm38.p1">GRCm38.p1</option>
|
|
|
|
|
|
|
|
<option value="GRCm38">GRCm38</option>
|
|
|
|
|
|
|
|
<option value="MGSCv37">MGSCv37</option>
|
|
|
|
|
|
</select>
|
|
|
|
|
|
<div class="cleaner"></div>
|
|
|
|
<div id="tabs" class="ui-tabs ui-widget ui-widget-content ui-corner-all">
|
|
<ul class="ui-tabs-nav ui-helper-reset ui-helper-clearfix ui-widget-header ui-corner-all">
|
|
<li class="ui-state-default ui-corner-top ui-tabs-selected ui-state-active ui-tabs-active"><a class="ui-tabs-anchor" href="#chromosome_lengths">Chromosome lengths</a></li>
|
|
<li class="ui-state-default ui-corner-top"><a class="ui-tabs-anchor" href="#total_lengths">Total lengths</a></li>
|
|
<li class="ui-state-default ui-corner-top"><a class="ui-tabs-anchor" href="#ungapped_lengths">Ungapped lengths</a></li>
|
|
<li class="ui-state-default ui-corner-top"><a class="ui-tabs-anchor" href="#n50s">N50s</a></li>
|
|
<li class="ui-state-default ui-corner-top"><a class="ui-tabs-anchor" href="#gaps">Gaps</a></li>
|
|
<li class="ui-state-default ui-corner-top"><a class="ui-tabs-anchor" href="#counts">Counts</a></li>
|
|
</ul>
|
|
|
|
<div id="chromosome_lengths" class="ui-tabs-panel ui-widget-content ui-corner-bottom">
|
|
|
|
Chromosome lengths are calculated by summing the length of the placed scaffolds and estimated gaps.
|
|
|
|
<div class="ui-ncbigrid-outer-div caption-exists" role="grid" tabindex="0">
|
|
<div class="ui-ncbigrid-inner-div" tabindex="0">
|
|
<table
|
|
class="ui-ncbigrid"
|
|
data-jig="ncbigrid"
|
|
data-jigconfig="
|
|
isPageToolbarHideable: false,
|
|
isSortable: true, columnTypes: [null, 'numComma', 'str', null, 'numComma', 'numComma', 'str'], sortFunctions: [sortChromosomeIDs, null, null, null, null, null, null]">
|
|
<thead>
|
|
<tr>
|
|
<th>Chromosome</th>
|
|
<th>Total length (bp)</th>
|
|
<th>GenBank accession</th>
|
|
<th>RefSeq accession</th>
|
|
</tr>
|
|
</thead>
|
|
<tbody>
|
|
|
|
<tr>
|
|
<td>1</td>
|
|
<td>195,154,279</td>
|
|
<td><a href="/nucleotide/CM000994.3">CM000994.3</a></td>
|
|
<td><a href="/nucleotide/NC_000067.7">NC_000067.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>2</td>
|
|
<td>181,755,017</td>
|
|
<td><a href="/nucleotide/CM000995.3">CM000995.3</a></td>
|
|
<td><a href="/nucleotide/NC_000068.8">NC_000068.8</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>3</td>
|
|
<td>159,745,316</td>
|
|
<td><a href="/nucleotide/CM000996.3">CM000996.3</a></td>
|
|
<td><a href="/nucleotide/NC_000069.7">NC_000069.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>4</td>
|
|
<td>156,860,686</td>
|
|
<td><a href="/nucleotide/CM000997.3">CM000997.3</a></td>
|
|
<td><a href="/nucleotide/NC_000070.7">NC_000070.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>5</td>
|
|
<td>151,758,149</td>
|
|
<td><a href="/nucleotide/CM000998.3">CM000998.3</a></td>
|
|
<td><a href="/nucleotide/NC_000071.7">NC_000071.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>6</td>
|
|
<td>149,588,044</td>
|
|
<td><a href="/nucleotide/CM000999.3">CM000999.3</a></td>
|
|
<td><a href="/nucleotide/NC_000072.7">NC_000072.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>7</td>
|
|
<td>144,995,196</td>
|
|
<td><a href="/nucleotide/CM001000.3">CM001000.3</a></td>
|
|
<td><a href="/nucleotide/NC_000073.7">NC_000073.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>8</td>
|
|
<td>130,127,694</td>
|
|
<td><a href="/nucleotide/CM001001.3">CM001001.3</a></td>
|
|
<td><a href="/nucleotide/NC_000074.7">NC_000074.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>9</td>
|
|
<td>124,359,700</td>
|
|
<td><a href="/nucleotide/CM001002.3">CM001002.3</a></td>
|
|
<td><a href="/nucleotide/NC_000075.7">NC_000075.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>10</td>
|
|
<td>130,530,862</td>
|
|
<td><a href="/nucleotide/CM001003.3">CM001003.3</a></td>
|
|
<td><a href="/nucleotide/NC_000076.7">NC_000076.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>11</td>
|
|
<td>121,973,369</td>
|
|
<td><a href="/nucleotide/CM001004.3">CM001004.3</a></td>
|
|
<td><a href="/nucleotide/NC_000077.7">NC_000077.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>12</td>
|
|
<td>120,092,757</td>
|
|
<td><a href="/nucleotide/CM001005.3">CM001005.3</a></td>
|
|
<td><a href="/nucleotide/NC_000078.7">NC_000078.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>13</td>
|
|
<td>120,883,175</td>
|
|
<td><a href="/nucleotide/CM001006.3">CM001006.3</a></td>
|
|
<td><a href="/nucleotide/NC_000079.7">NC_000079.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>14</td>
|
|
<td>125,139,656</td>
|
|
<td><a href="/nucleotide/CM001007.3">CM001007.3</a></td>
|
|
<td><a href="/nucleotide/NC_000080.7">NC_000080.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>15</td>
|
|
<td>104,073,951</td>
|
|
<td><a href="/nucleotide/CM001008.3">CM001008.3</a></td>
|
|
<td><a href="/nucleotide/NC_000081.7">NC_000081.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>16</td>
|
|
<td>98,008,968</td>
|
|
<td><a href="/nucleotide/CM001009.3">CM001009.3</a></td>
|
|
<td><a href="/nucleotide/NC_000082.7">NC_000082.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>17</td>
|
|
<td>95,294,699</td>
|
|
<td><a href="/nucleotide/CM001010.3">CM001010.3</a></td>
|
|
<td><a href="/nucleotide/NC_000083.7">NC_000083.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>18</td>
|
|
<td>90,720,763</td>
|
|
<td><a href="/nucleotide/CM001011.3">CM001011.3</a></td>
|
|
<td><a href="/nucleotide/NC_000084.7">NC_000084.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>19</td>
|
|
<td>61,420,004</td>
|
|
<td><a href="/nucleotide/CM001012.3">CM001012.3</a></td>
|
|
<td><a href="/nucleotide/NC_000085.7">NC_000085.7</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>X</td>
|
|
<td>169,476,592</td>
|
|
<td><a href="/nucleotide/CM001013.3">CM001013.3</a></td>
|
|
<td><a href="/nucleotide/NC_000086.8">NC_000086.8</a></td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Y</td>
|
|
<td>91,455,967</td>
|
|
<td><a href="/nucleotide/CM001014.3">CM001014.3</a></td>
|
|
<td><a href="/nucleotide/NC_000087.8">NC_000087.8</a></td>
|
|
</tr>
|
|
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
</div>
|
|
|
|
|
|
|
|
</div>
|
|
|
|
<div id="total_lengths" class="ui-tabs-panel ui-widget-content ui-corner-bottom">
|
|
|
|
|
|
Total lengths are calculated by summing the length of the sequenced bases and estimated gaps.
|
|
|
|
|
|
<div id="total_lengths_inner_tabs" data-jig="ncbitabs">
|
|
|
|
<ul>
|
|
<li><a href="#total_lengths_primary">By chromosome</a></li>
|
|
<li><a href="#total_lengths_regions">By region</a></li>
|
|
</ul>
|
|
|
|
|
|
<div id="total_lengths_primary" class="inner_tabs">
|
|
<div class="ui-ncbigrid-outer-div caption-exists" role="grid" tabindex="0">
|
|
<div class="ui-ncbigrid-inner-div" tabindex="0">
|
|
<table class="ui-ncbigrid"
|
|
data-jig="ncbigrid"
|
|
data-jigconfig="
|
|
isPageToolbarHideable: false,
|
|
isSortable: true, columnTypes: [null, 'numComma', 'str', null, 'numComma', 'numComma', 'str'], sortFunctions: [sortChromosomeIDs, null, null, null, null, null, null]">
|
|
<thead>
|
|
|
|
<th>Chromosome</th>
|
|
<th>All scaffolds</th>
|
|
<th>Placed scaffolds</th>
|
|
<th>Unplaced scaffolds</th>
|
|
|
|
</thead>
|
|
<tbody>
|
|
|
|
<tr>
|
|
<td>1</td>
|
|
<td>195,974,786</td>
|
|
<td>195,154,279</td>
|
|
<td>820,507</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>2</td>
|
|
<td>181,755,017</td>
|
|
<td>181,755,017</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>3</td>
|
|
<td>159,745,316</td>
|
|
<td>159,745,316</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>4</td>
|
|
<td>156,862,662</td>
|
|
<td>156,860,686</td>
|
|
<td>1,976</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>5</td>
|
|
<td>153,496,487</td>
|
|
<td>151,758,149</td>
|
|
<td>1,738,338</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>6</td>
|
|
<td>149,588,044</td>
|
|
<td>149,588,044</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>7</td>
|
|
<td>145,171,164</td>
|
|
<td>144,995,196</td>
|
|
<td>175,968</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>8</td>
|
|
<td>130,127,694</td>
|
|
<td>130,127,694</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>9</td>
|
|
<td>124,359,700</td>
|
|
<td>124,359,700</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>10</td>
|
|
<td>130,530,862</td>
|
|
<td>130,530,862</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>11</td>
|
|
<td>121,973,369</td>
|
|
<td>121,973,369</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>12</td>
|
|
<td>120,092,757</td>
|
|
<td>120,092,757</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>13</td>
|
|
<td>120,883,175</td>
|
|
<td>120,883,175</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>14</td>
|
|
<td>125,139,656</td>
|
|
<td>125,139,656</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>15</td>
|
|
<td>104,073,951</td>
|
|
<td>104,073,951</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>16</td>
|
|
<td>98,008,968</td>
|
|
<td>98,008,968</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>17</td>
|
|
<td>95,294,699</td>
|
|
<td>95,294,699</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>18</td>
|
|
<td>90,720,763</td>
|
|
<td>90,720,763</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>19</td>
|
|
<td>61,420,004</td>
|
|
<td>61,420,004</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>X</td>
|
|
<td>170,035,695</td>
|
|
<td>169,476,592</td>
|
|
<td>559,103</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Y</td>
|
|
<td>92,212,126</td>
|
|
<td>91,455,967</td>
|
|
<td>756,159</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Un</td>
|
|
<td>739,257</td>
|
|
<td>na</td>
|
|
<td>739,257</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Genome</td>
|
|
<td>2,728,206,152</td>
|
|
<td>2,723,414,844</td>
|
|
<td>4,791,308</td>
|
|
</tr>
|
|
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div id="total_lengths_regions" class="inner_tabs">
|
|
<div class="ui-ncbigrid-outer-div caption-exists" role="grid" tabindex="0">
|
|
<div class="ui-ncbigrid-inner-div" tabindex="0">
|
|
<table class="ui-ncbigrid"
|
|
data-jig="ncbigrid"
|
|
data-jigconfig="
|
|
isPageToolbarHideable: false,
|
|
isSortable: true, columnTypes: [null, 'numComma', 'str', null, 'numComma', 'numComma', 'str'], sortFunctions: [sortChromosomeIDs, null, null, null, null, null, null]">
|
|
<thead>
|
|
|
|
<th>Region</th>
|
|
<th>Location</th>
|
|
<th>Sequence types</th>
|
|
<th>Scaffold length</th>
|
|
|
|
</thead>
|
|
<tbody>
|
|
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
|
|
</div>
|
|
|
|
</div>
|
|
|
|
<div id="n50s" class="ui-tabs-panel ui-widget-content ui-corner-bottom">
|
|
|
|
|
|
N50 is a measure of contiguity. 50% of the bases reside in a scaffold of this length or greater.
|
|
|
|
|
|
<div id="n50s_inner_tabs" data-jig="ncbitabs">
|
|
|
|
<ul>
|
|
<li><a href="#n50s_primary">By chromosome</a></li>
|
|
<li><a href="#n50s_regions">By region</a></li>
|
|
</ul>
|
|
|
|
|
|
<div id="n50s_primary" class="inner_tabs">
|
|
<div class="ui-ncbigrid-outer-div caption-exists" role="grid" tabindex="0">
|
|
<div class="ui-ncbigrid-inner-div" tabindex="0">
|
|
<table class="ui-ncbigrid"
|
|
data-jig="ncbigrid"
|
|
data-jigconfig="
|
|
isPageToolbarHideable: false,
|
|
isSortable: true, columnTypes: [null, 'numComma', 'str', null, 'numComma', 'numComma', 'str'], sortFunctions: [sortChromosomeIDs, null, null, null, null, null, null]">
|
|
<thead>
|
|
|
|
<th>Chromosome</th>
|
|
<th>All scaffolds</th>
|
|
<th>Placed scaffolds</th>
|
|
<th>Unplaced scaffolds</th>
|
|
|
|
</thead>
|
|
<tbody>
|
|
|
|
<tr>
|
|
<td>1</td>
|
|
<td>109,679,455</td>
|
|
<td>109,679,455</td>
|
|
<td>206,961</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>2</td>
|
|
<td>172,291,094</td>
|
|
<td>172,291,094</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>3</td>
|
|
<td>156,645,316</td>
|
|
<td>156,645,316</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>4</td>
|
|
<td>86,185,036</td>
|
|
<td>86,185,036</td>
|
|
<td>1,976</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>5</td>
|
|
<td>148,608,149</td>
|
|
<td>148,608,149</td>
|
|
<td>953,012</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>6</td>
|
|
<td>101,774,071</td>
|
|
<td>101,774,071</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>7</td>
|
|
<td>106,145,001</td>
|
|
<td>106,145,001</td>
|
|
<td>175,968</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>8</td>
|
|
<td>108,725,500</td>
|
|
<td>108,725,500</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>9</td>
|
|
<td>120,961,466</td>
|
|
<td>120,961,466</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>10</td>
|
|
<td>127,380,862</td>
|
|
<td>127,380,862</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>11</td>
|
|
<td>118,823,369</td>
|
|
<td>118,823,369</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>12</td>
|
|
<td>116,942,757</td>
|
|
<td>116,942,757</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>13</td>
|
|
<td>117,733,175</td>
|
|
<td>117,733,175</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>14</td>
|
|
<td>105,519,884</td>
|
|
<td>105,519,884</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>15</td>
|
|
<td>100,923,951</td>
|
|
<td>100,923,951</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>16</td>
|
|
<td>94,858,968</td>
|
|
<td>94,858,968</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>17</td>
|
|
<td>81,319,825</td>
|
|
<td>81,319,825</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>18</td>
|
|
<td>87,620,763</td>
|
|
<td>87,620,763</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>19</td>
|
|
<td>54,530,079</td>
|
|
<td>54,530,079</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>X</td>
|
|
<td>44,068,269</td>
|
|
<td>44,068,269</td>
|
|
<td>559,103</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Y</td>
|
|
<td>17,801,351</td>
|
|
<td>17,801,351</td>
|
|
<td>182,347</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Un</td>
|
|
<td>31,704</td>
|
|
<td>na</td>
|
|
<td>31,704</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Genome</td>
|
|
<td>106,145,001</td>
|
|
<td>106,145,001</td>
|
|
<td>205,776</td>
|
|
</tr>
|
|
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div id="n50s_regions" class="inner_tabs">
|
|
<div class="ui-ncbigrid-outer-div caption-exists" role="grid" tabindex="0">
|
|
<div class="ui-ncbigrid-inner-div" tabindex="0">
|
|
<table class="ui-ncbigrid"
|
|
data-jig="ncbigrid"
|
|
data-jigconfig="
|
|
isPageToolbarHideable: false,
|
|
isSortable: true, columnTypes: [null, 'numComma', 'str', null, 'numComma', 'numComma', 'str'], sortFunctions: [sortChromosomeIDs, null, null, null, null, null, null]">
|
|
<thead>
|
|
|
|
<th>Region</th>
|
|
<th>Location</th>
|
|
<th>Sequence types</th>
|
|
<th>Scaffold length</th>
|
|
|
|
</thead>
|
|
<tbody>
|
|
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
|
|
</div>
|
|
|
|
</div>
|
|
|
|
<div id="ungapped_lengths" class="ui-tabs-panel ui-widget-content ui-corner-bottom">
|
|
|
|
|
|
Ungapped lengths are calculated by summing the length of sequenced bases only. 'Ns' are excluded.
|
|
|
|
|
|
<div id="ungapped_lengths_inner_tabs" data-jig="ncbitabs">
|
|
|
|
<ul>
|
|
<li><a href="#ungapped_lengths_primary">By chromosome</a></li>
|
|
<li><a href="#ungapped_lengths_regions">By region</a></li>
|
|
</ul>
|
|
|
|
|
|
<div id="ungapped_lengths_primary" class="inner_tabs">
|
|
<div class="ui-ncbigrid-outer-div caption-exists" role="grid" tabindex="0">
|
|
<div class="ui-ncbigrid-inner-div" tabindex="0">
|
|
<table class="ui-ncbigrid"
|
|
data-jig="ncbigrid"
|
|
data-jigconfig="
|
|
isPageToolbarHideable: false,
|
|
isSortable: true, columnTypes: [null, 'numComma', 'str', null, 'numComma', 'numComma', 'str'], sortFunctions: [sortChromosomeIDs, null, null, null, null, null, null]">
|
|
<thead>
|
|
|
|
<th>Chromosome</th>
|
|
<th>All scaffolds</th>
|
|
<th>Placed scaffolds</th>
|
|
<th>Unplaced scaffolds</th>
|
|
|
|
</thead>
|
|
<tbody>
|
|
|
|
<tr>
|
|
<td>1</td>
|
|
<td>192,774,546</td>
|
|
<td>191,954,039</td>
|
|
<td>820,507</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>2</td>
|
|
<td>178,354,017</td>
|
|
<td>178,354,017</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>3</td>
|
|
<td>156,538,186</td>
|
|
<td>156,538,186</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>4</td>
|
|
<td>152,711,764</td>
|
|
<td>152,709,788</td>
|
|
<td>1,976</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>5</td>
|
|
<td>149,744,487</td>
|
|
<td>148,006,149</td>
|
|
<td>1,738,338</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>6</td>
|
|
<td>146,383,044</td>
|
|
<td>146,383,044</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>7</td>
|
|
<td>141,850,664</td>
|
|
<td>141,674,696</td>
|
|
<td>175,968</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>8</td>
|
|
<td>125,677,394</td>
|
|
<td>125,677,394</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>9</td>
|
|
<td>121,184,854</td>
|
|
<td>121,184,854</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>10</td>
|
|
<td>127,155,762</td>
|
|
<td>127,155,762</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>11</td>
|
|
<td>118,822,369</td>
|
|
<td>118,822,369</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>12</td>
|
|
<td>116,922,757</td>
|
|
<td>116,922,757</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>13</td>
|
|
<td>117,256,175</td>
|
|
<td>117,256,175</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>14</td>
|
|
<td>121,174,156</td>
|
|
<td>121,174,156</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>15</td>
|
|
<td>100,923,951</td>
|
|
<td>100,923,951</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>16</td>
|
|
<td>94,850,968</td>
|
|
<td>94,850,968</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>17</td>
|
|
<td>91,815,499</td>
|
|
<td>91,815,499</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>18</td>
|
|
<td>87,605,763</td>
|
|
<td>87,605,763</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>19</td>
|
|
<td>58,220,004</td>
|
|
<td>58,220,004</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>X</td>
|
|
<td>164,715,435</td>
|
|
<td>164,206,332</td>
|
|
<td>509,103</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Y</td>
|
|
<td>89,242,126</td>
|
|
<td>88,485,967</td>
|
|
<td>756,159</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Un</td>
|
|
<td>681,617</td>
|
|
<td>na</td>
|
|
<td>681,617</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Genome</td>
|
|
<td>2,654,605,538</td>
|
|
<td>2,649,921,870</td>
|
|
<td>4,683,668</td>
|
|
</tr>
|
|
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div id="ungapped_lengths_regions" class="inner_tabs">
|
|
<div class="ui-ncbigrid-outer-div caption-exists" role="grid" tabindex="0">
|
|
<div class="ui-ncbigrid-inner-div" tabindex="0">
|
|
<table class="ui-ncbigrid"
|
|
data-jig="ncbigrid"
|
|
data-jigconfig="
|
|
isPageToolbarHideable: false,
|
|
isSortable: true, columnTypes: [null, 'numComma', 'str', null, 'numComma', 'numComma', 'str'], sortFunctions: [sortChromosomeIDs, null, null, null, null, null, null]">
|
|
<thead>
|
|
|
|
<th>Region</th>
|
|
<th>Location</th>
|
|
<th>Sequence types</th>
|
|
<th>Scaffold length</th>
|
|
|
|
</thead>
|
|
<tbody>
|
|
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
|
|
</div>
|
|
|
|
</div>
|
|
|
|
<div id="gaps" class="ui-tabs-panel ui-widget-content ui-corner-bottom">
|
|
|
|
Spanned gaps are found within scaffolds and there is some evidence suggesting linkage
|
|
between the two sequences flanking the gap. Unspanned gaps are found between scaffolds and
|
|
there is no evidence of linkage.
|
|
|
|
<div id="gaps_inner_tabs" data-jig="ncbitabs">
|
|
|
|
<ul>
|
|
<li><a href="#gaps_primary">By chromosome</a></li>
|
|
<li><a href="#gaps_regions">By region</a></li>
|
|
</ul>
|
|
|
|
|
|
<div id="gaps_primary" class="inner_tabs">
|
|
<div class="ui-ncbigrid-outer-div caption-exists" role="grid" tabindex="0">
|
|
<div class="ui-ncbigrid-inner-div" tabindex="0">
|
|
<table class="ui-ncbigrid"
|
|
data-jig="ncbigrid"
|
|
data-jigconfig="
|
|
isPageToolbarHideable: false,
|
|
">
|
|
|
|
<thead>
|
|
<tr>
|
|
<th></th>
|
|
<th colspan="3">Spanned gaps</th>
|
|
<th colspan="3">Unspanned gaps</th>
|
|
</tr>
|
|
<tr>
|
|
<th>Chromosome </th>
|
|
<th>All scaffolds</th>
|
|
<th>Placed scaffolds</th>
|
|
<th>Unplaced scaffolds</th>
|
|
<th>All scaffolds</th>
|
|
<th>Placed scaffolds</th>
|
|
<th>Unplaced scaffolds</th>
|
|
</tr>
|
|
</thead>
|
|
<tbody>
|
|
|
|
<tr>
|
|
<td>1</td>
|
|
<td>6</td>
|
|
<td>6</td>
|
|
<td>0</td>
|
|
<td>6</td>
|
|
<td>6</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>2</td>
|
|
<td>2</td>
|
|
<td>2</td>
|
|
<td>0</td>
|
|
<td>9</td>
|
|
<td>9</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>3</td>
|
|
<td>4</td>
|
|
<td>4</td>
|
|
<td>0</td>
|
|
<td>4</td>
|
|
<td>4</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>4</td>
|
|
<td>29</td>
|
|
<td>29</td>
|
|
<td>0</td>
|
|
<td>6</td>
|
|
<td>6</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>5</td>
|
|
<td>3</td>
|
|
<td>3</td>
|
|
<td>0</td>
|
|
<td>5</td>
|
|
<td>5</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>6</td>
|
|
<td>1</td>
|
|
<td>1</td>
|
|
<td>0</td>
|
|
<td>6</td>
|
|
<td>6</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>7</td>
|
|
<td>4</td>
|
|
<td>4</td>
|
|
<td>0</td>
|
|
<td>6</td>
|
|
<td>6</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>8</td>
|
|
<td>6</td>
|
|
<td>6</td>
|
|
<td>0</td>
|
|
<td>6</td>
|
|
<td>6</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>9</td>
|
|
<td>7</td>
|
|
<td>7</td>
|
|
<td>0</td>
|
|
<td>5</td>
|
|
<td>5</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>10</td>
|
|
<td>2</td>
|
|
<td>2</td>
|
|
<td>0</td>
|
|
<td>5</td>
|
|
<td>5</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>11</td>
|
|
<td>1</td>
|
|
<td>1</td>
|
|
<td>0</td>
|
|
<td>5</td>
|
|
<td>5</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>12</td>
|
|
<td>1</td>
|
|
<td>1</td>
|
|
<td>0</td>
|
|
<td>5</td>
|
|
<td>5</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>13</td>
|
|
<td>3</td>
|
|
<td>3</td>
|
|
<td>0</td>
|
|
<td>5</td>
|
|
<td>5</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>14</td>
|
|
<td>3</td>
|
|
<td>3</td>
|
|
<td>0</td>
|
|
<td>6</td>
|
|
<td>6</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>15</td>
|
|
<td>0</td>
|
|
<td>0</td>
|
|
<td>0</td>
|
|
<td>5</td>
|
|
<td>5</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>16</td>
|
|
<td>3</td>
|
|
<td>3</td>
|
|
<td>0</td>
|
|
<td>5</td>
|
|
<td>5</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>17</td>
|
|
<td>5</td>
|
|
<td>5</td>
|
|
<td>0</td>
|
|
<td>6</td>
|
|
<td>6</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>18</td>
|
|
<td>1</td>
|
|
<td>1</td>
|
|
<td>0</td>
|
|
<td>4</td>
|
|
<td>4</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>19</td>
|
|
<td>0</td>
|
|
<td>0</td>
|
|
<td>0</td>
|
|
<td>6</td>
|
|
<td>6</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>X</td>
|
|
<td>50</td>
|
|
<td>49</td>
|
|
<td>1</td>
|
|
<td>19</td>
|
|
<td>19</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Y</td>
|
|
<td>8</td>
|
|
<td>8</td>
|
|
<td>0</td>
|
|
<td>19</td>
|
|
<td>19</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Un</td>
|
|
<td>65</td>
|
|
<td>na</td>
|
|
<td>65</td>
|
|
<td>0</td>
|
|
<td>na</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Genome</td>
|
|
<td>204</td>
|
|
<td>138</td>
|
|
<td>66</td>
|
|
<td>143</td>
|
|
<td>143</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
</tbody>
|
|
|
|
</table>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div id="gaps_regions" class="inner_tabs">
|
|
<div class="ui-ncbigrid-outer-div caption-exists" role="grid" tabindex="0">
|
|
<div class="ui-ncbigrid-inner-div" tabindex="0">
|
|
<table class="ui-ncbigrid"
|
|
data-jig="ncbigrid"
|
|
data-jigconfig="
|
|
isPageToolbarHideable: false,
|
|
isSortable: true, columnTypes: ['str', null, 'str', 'numComma', 'numComma', 'numComma', 'str'], sortFunctions: [null, sortChromosomeIDs, null, null, null, null]">
|
|
|
|
<thead>
|
|
<tr>
|
|
<th>Region</th>
|
|
<th>Location</th>
|
|
<th>Sequence types</th>
|
|
<th>Scaffolds</th>
|
|
<th>Spanned gaps</th>
|
|
<th>Unspanned gaps</th>
|
|
</tr>
|
|
</thead>
|
|
<tbody>
|
|
|
|
</tbody>
|
|
|
|
</table>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
</div>
|
|
|
|
</div>
|
|
|
|
<div id="counts" class="ui-tabs-panel ui-widget-content ui-corner-bottom">
|
|
|
|
|
|
Scaffold counts.
|
|
|
|
|
|
<div id="counts_inner_tabs" data-jig="ncbitabs">
|
|
|
|
<ul>
|
|
<li><a href="#counts_primary">By chromosome</a></li>
|
|
<li><a href="#counts_regions">By region</a></li>
|
|
</ul>
|
|
|
|
|
|
<div id="counts_primary" class="inner_tabs">
|
|
<div class="ui-ncbigrid-outer-div caption-exists" role="grid" tabindex="0">
|
|
<div class="ui-ncbigrid-inner-div" tabindex="0">
|
|
<table class="ui-ncbigrid"
|
|
data-jig="ncbigrid"
|
|
data-jigconfig="
|
|
isPageToolbarHideable: false,
|
|
isSortable: true, columnTypes: [null, 'numComma', 'str', null, 'numComma', 'numComma', 'str'], sortFunctions: [sortChromosomeIDs, null, null, null, null, null, null]">
|
|
<thead>
|
|
|
|
<th>Chromosome</th>
|
|
<th>All scaffolds</th>
|
|
<th>Placed scaffolds</th>
|
|
<th>Unplaced scaffolds</th>
|
|
|
|
</thead>
|
|
<tbody>
|
|
|
|
<tr>
|
|
<td>1</td>
|
|
<td>8</td>
|
|
<td>2</td>
|
|
<td>6</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>2</td>
|
|
<td>5</td>
|
|
<td>5</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>3</td>
|
|
<td>1</td>
|
|
<td>1</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>4</td>
|
|
<td>3</td>
|
|
<td>2</td>
|
|
<td>1</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>5</td>
|
|
<td>6</td>
|
|
<td>1</td>
|
|
<td>5</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>6</td>
|
|
<td>2</td>
|
|
<td>2</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>7</td>
|
|
<td>3</td>
|
|
<td>2</td>
|
|
<td>1</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>8</td>
|
|
<td>2</td>
|
|
<td>2</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>9</td>
|
|
<td>2</td>
|
|
<td>2</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>10</td>
|
|
<td>1</td>
|
|
<td>1</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>11</td>
|
|
<td>1</td>
|
|
<td>1</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>12</td>
|
|
<td>1</td>
|
|
<td>1</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>13</td>
|
|
<td>1</td>
|
|
<td>1</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>14</td>
|
|
<td>2</td>
|
|
<td>2</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>15</td>
|
|
<td>1</td>
|
|
<td>1</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>16</td>
|
|
<td>1</td>
|
|
<td>1</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>17</td>
|
|
<td>2</td>
|
|
<td>2</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>18</td>
|
|
<td>1</td>
|
|
<td>1</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>19</td>
|
|
<td>2</td>
|
|
<td>2</td>
|
|
<td>0</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>X</td>
|
|
<td>15</td>
|
|
<td>14</td>
|
|
<td>1</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Y</td>
|
|
<td>20</td>
|
|
<td>16</td>
|
|
<td>4</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Un</td>
|
|
<td>21</td>
|
|
<td>na</td>
|
|
<td>21</td>
|
|
</tr>
|
|
|
|
<tr>
|
|
<td>Genome</td>
|
|
<td>101</td>
|
|
<td>62</td>
|
|
<td>39</td>
|
|
</tr>
|
|
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div id="counts_regions" class="inner_tabs">
|
|
<div class="ui-ncbigrid-outer-div caption-exists" role="grid" tabindex="0">
|
|
<div class="ui-ncbigrid-inner-div" tabindex="0">
|
|
<table class="ui-ncbigrid"
|
|
data-jig="ncbigrid"
|
|
data-jigconfig="
|
|
isPageToolbarHideable: false,
|
|
isSortable: true, columnTypes: [null, 'numComma', 'str', null, 'numComma', 'numComma', 'str'], sortFunctions: [sortChromosomeIDs, null, null, null, null, null, null]">
|
|
<thead>
|
|
|
|
<th>Region</th>
|
|
<th>Location</th>
|
|
<th>Sequence types</th>
|
|
<th>Scaffold length</th>
|
|
|
|
</thead>
|
|
<tbody>
|
|
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
|
|
</div>
|
|
|
|
</div>
|
|
|
|
</div>
|
|
|
|
<div id="global_stats">
|
|
<table>
|
|
<thead>
|
|
<tr><th colspan="2">General</th></tr>
|
|
</thead>
|
|
<tbody>
|
|
<tr><td>Assembly name</td><td>GRCm39</td></tr>
|
|
<tr><td>Release date</td><td>2020-06-24</td></tr>
|
|
<tr><td>Assembly type</td><td>haploid</td></tr>
|
|
<tr><td>Release type</td><td>major</td></tr>
|
|
<tr><td>Assembly units</td><td>2</td></tr>
|
|
<tr><td>Total bases</td><td>2,728,222,451</td></tr>
|
|
<tr><td>Total non-N bases</td><td>2,654,621,837</td></tr>
|
|
<tr><td>Primary assembly N50</td><td>106,145,001</td></tr>
|
|
</tbody>
|
|
</table>
|
|
<table>
|
|
<thead>
|
|
<tr><th colspan="2">Regions</th></tr>
|
|
</thead>
|
|
<tbody>
|
|
<tr><td>Total regions</td><td>3</td></tr>
|
|
<tr><td>Regions with alternate loci</td><td>0</td></tr>
|
|
<tr><td>Regions with FIX patches</td><td>0</td></tr>
|
|
<tr><td>Regions with NOVEL patches</td><td>0</td></tr>
|
|
<tr><td>Regions as PAR</td><td>2</td></tr>
|
|
</tbody>
|
|
<table>
|
|
<thead>
|
|
<tr><th colspan="2">Alternate loci and patches</th></tr>
|
|
</thead>
|
|
<tbody>
|
|
<tr><td>Alternate loci</td><td>0</td></tr>
|
|
<tr><td>Alternate loci aligned to primary assembly</td><td>0</td></tr>
|
|
<tr><td>FIX patches</td><td>0</td></tr>
|
|
<tr><td>FIX patches aligned to primary assembly</td><td>0</td></tr>
|
|
<tr><td>NOVEL patches</td><td>0</td></tr>
|
|
<tr><td>NOVEL patches aligned to primary assembly</td><td>0</td></tr>
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
<script type="text/javascript">
|
|
|
|
jQuery(function(){
|
|
jQuery("#tabs").tabs();
|
|
});
|
|
|
|
</script>
|
|
|
|
|
|
</div>
|
|
</div>
|
|
<div class="cleaner"></div>
|
|
<div id="footer">
|
|
<ul>
|
|
<li><a title="Get GRC data via FTP" href="https://ftp.ncbi.nlm.nih.gov/pub/grc/">FTP</a></li>
|
|
<li><a target="_blank" href="https://www.genome.gov">NHGRI</a></li>
|
|
<li><a target="_blank" href="http://www.wellcome.ac.uk">Wellcome Sanger Institute</a></li>
|
|
<li><a target="_blank" href="https://www.hhs.gov">HHS</a></li>
|
|
<li><a target="_blank" href="https://www.nih.gov">NIH</a></li>
|
|
<li><a target="_blank" href="https://www.nih.gov/web-policies-notices">Accessibility</a></li>
|
|
<li class="last"><a target="_blank" href="https://www.hhs.gov/vulnerability-disclosure-policy/index.html">HHS Vulnerability Disclosure</a></li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div><!-- end page -->
|
|
|
|
|
|
<script type="text/javascript" src="/grc/static/grc/js/stats.js"></script>
|
|
|
|
|
|
<script type="text/javascript" src="/portal/portal3rc.fcgi/rlib/js/InstrumentNCBIBaseJS/InstrumentPageStarterJS.js"></script>
|
|
</body>
|
|
</html>
|