158 lines
8.8 KiB
HTML
158 lines
8.8 KiB
HTML
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<title>GEO Documentation - GEO - NCBI</title>
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<meta name="keywords" content="NCBI, national institutes of health, nih, database, archive, central, bioinformatics, biomedicine, geo, gene, expression, omnibus, chips, microarrays, oligonucleotide, array, sage, CGH" />
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<meta name="description" content="Gene Expression Omnibus (GEO) is a database repository of high throughput gene expression data and hybridization arrays, chips, microarrays." />
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<li><a href="#">GEO Publications</a>
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<li><a href="/geo/info/GEOHandoutFinal.pdf">Handout</a></li>
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<li><a href="/pmc/articles/PMC10767856/">NAR 2024 (latest)</a></li>
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<li><a href="/pmc/articles/PMC99122/">NAR 2002 (original)</a></li>
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<li><a href="/pmc/?term=10767856,4944384,3531084,3341798,3013736,2686538,2270403,1669752,1619900,1619899,539976,99122">All publications</a></li>
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<a title="GEO documentation guide" href="/geo/info/">Info</a> »
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<span>GEO Documentation</span><span id="login_status"><a href="/geo/submitter/" title="Click here to login. You need to do this only if you want to edit the contact information, submit data, see your unreleased data, or work with data already submitted by you. You do not need to login if you are here just to browse through public holdings">Login</a></span></div>
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<div id="content">
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<h1>GEO Documentation</h1>
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<p class="highlight">
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Starting in January 2025, GEO will no longer accept SAGE submissions.
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Please <a href="mailto:geo@ncbi.nlm.nih.gov">contact GEO</a> if you have any questions.
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<h2>General information</h2>
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<ul class="doc_list">
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<li><a href="/geo/info/faq.html">Frequently Asked Questions</a> </li>
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<li><a href="/geo/info/overview.html">Overview of data organization</a></li>
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<li><a href="/geo/info/MIAME.html">MIAME guidelines</a></li>
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<li><a href="/geo/info/linking.html">Citing and linking to the GEO database</a></li>
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<li><a href="/geo/info/disclaimer.html">Data disclaimer</a></li>
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<li><a href="/geo/info/reviewer.html">Guidelines for reviewers and journal editors</a></li>
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<li><a href="/pmc/?term=4944384,3531084,3341798,3013736,2686538,2270403,1669752,1619900,1619899,539976,99122">GEO publications</a></li>
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<li><a href="/geo/info/citations.html">Citation listings: deposit and third-party usage</a></li>
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</ul>
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<h2>Submission information</h2>
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<ul class="doc_list">
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<li><a href="/geo/info/submission.html">General data submission guide</a></li>
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<li><span>Data types</span>
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<ul>
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<li><span>Array submissions</span>
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<ul>
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<li><a href="/geo/info/submission.html#Table">General</a></li>
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<li><a href="/geo/info/geo_affy.html">Affymetrix</a></li>
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<li><a href="/geo/info/geo_agil.html">Agilent</a></li>
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<li><a href="/geo/info/geo_nimb.html">Nimblegen</a></li>
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<li><a href="/geo/info/geo_illu.html">Illumina</a></li>
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</ul>
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</li>
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<li><a href="/geo/info/geo_rtpcr.html">RT-PCR submissions</a></li>
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<li><a href="/geo/info/seq.html">High-throughput sequence submissions</a></li>
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<li><a href="/geo/info/geo_sage.html">Traditional SAGE submissions</a></li>
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</ul>
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<li><span>Submission format options</span>
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<ul>
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<li><a href="/geo/info/spreadsheet.html">GEOarchive (spreadsheets, e.g., Excel)</a></li>
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<li><a href="/geo/info/submissionftp.html">GEO File Transfer Protocol (FTP)</a></li>
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<li><a href="/geo/info/validation.html">GEO Metadata Validation Rules</a></li>
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<li><a href="/geo/info/platform.html">Platform content guidelines</a></li>
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<li><a href="/geo/info/update.html">Updating GEO records or account information</a></li>
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</ul>
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<h2>Data download, query and analysis</h2>
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<li><a href="/geo/info/download.html">Download options</a></li>
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<li><a href="/geo/info/datasets.html">About GEO DataSets</a></li>
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<li><a href="/geo/info/profiles.html">About GEO Profiles</a></li>
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<li><a href="/geo/info/qqtutorial.html">Querying GEO DataSets and GEO Profiles</a></li>
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<li><a href="/geo/info/geo_paccess.html">Programmatic access</a></li>
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<li><a href="/geo/info/rnaseqcounts.html">NCBI-generated RNA-seq count data</a></li>
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<li><a href="/geo/geo2r/">Analyze with GEO2R</a></li>
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<li><a href="/geo/info/geo2r.html">About GEO2R</a></li>
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</ul>
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<h2>Featured projects</h2>
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<ul class="doc_list">
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<li><a href="/geo/encode/">ENCODE</a> </li>
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<li><a href="/geo/roadmap/epigenomics/">RoadMap Epigenomics</a> (legacy)</li>
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Last modified: July 16, 2024</div>
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<span class="helpbar">|<a href="https://www.nlm.nih.gov"> NLM </a>|<a href="https://www.nih.gov"> NIH </a>|<a href="mailto:geo@ncbi.nlm.nih.gov"> Email GEO </a>|<a href="/geo/info/disclaimer.html"> Disclaimer </a>|<a href="https://www.nlm.nih.gov/accessibility.html"> Accessibility </a>|<a href="https://www.hhs.gov/vulnerability-disclosure-policy/index.html"> HHS Vulnerability Disclosure </a>|
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