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3092 lines
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256 KiB
XML
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<h1 class="res_name"><a href="/gene/">Gene</a></h1>
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<h2 class="res_tagline">Genes and mapped phenotypes</h2>
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<div class="search"><div class="search_form"><label for="database" class="offscreen_noflow">Search database</label><select id="database"><optgroup label="Recent"><option value="pubmed">PubMed</option><option value="medgen">MedGen</option><option value="books">Books</option><option value="clinvar" class="last">ClinVar</option></optgroup><optgroup label="All"><option value="gquery">All Databases</option><option value="assembly" data-ac_dict="assembly">Assembly</option><option value="biocollections">Biocollections</option><option value="bioproject">BioProject</option><option value="biosample">BioSample</option><option value="books">Books</option><option value="clinvar">ClinVar</option><option value="cdd">Conserved Domains</option><option value="gap">dbGaP</option><option value="dbvar">dbVar</option><option value="gene" selected="selected" data-ac_dict="gene">Gene</option><option value="genome" data-ac_dict="genome">Genome</option><option value="gds">GEO DataSets</option><option value="geoprofiles">GEO Profiles</option><option value="gtr">GTR</option><option value="ipg">Identical Protein Groups</option><option value="medgen">MedGen</option><option value="mesh">MeSH</option><option value="nlmcatalog">NLM Catalog</option><option value="nuccore" data-ac_dict="nuccore">Nucleotide</option><option value="omim">OMIM</option><option value="pmc">PMC</option><option value="protein" data-ac_dict="protein">Protein</option><option value="proteinclusters">Protein Clusters</option><option value="protfam">Protein Family Models</option><option value="pcassay">PubChem BioAssay</option><option value="pccompound">PubChem Compound</option><option value="pcsubstance">PubChem Substance</option><option value="pubmed">PubMed</option><option value="snp">SNP</option><option value="sra">SRA</option><option value="structure">Structure</option><option value="taxonomy">Taxonomy</option><option value="toolkit">ToolKit</option><option value="toolkitall">ToolKitAll</option><option value="toolkitbookgh">ToolKitBookgh</option></optgroup></select><div class="nowrap"><label for="term" class="offscreen_noflow" accesskey="/">Search term</label><div class="nowrap"><input type="text" name="term" id="term" title="Search Gene. Use up and down arrows to choose an item from the autocomplete." value="" class="jig-ncbiclearbutton jig-ncbiautocomplete" data-jigconfig="dictionary:'gene',disableUrl:'NcbiSearchBarAutoComplCtrl'" autocomplete="off" data-sbconfig="ds:'no',pjs:'yes',afs:'yes'" /></div><button id="search" type="submit" class="button_search nowrap" cmd="go">Search</button></div></div><ul class="searchlinks inline_list"><set></set><li><a href="/gene/advanced">Advanced</a></li><li class="help"><a id="help" class="jig-ncbihelpwindow" target="ncbihelp" name="help" href="/books/NBK3841/">Help</a></li></ul></div>
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<input name="EntrezSystem2.PEntrez.Gene.Gene_PageController.PreviousPageName" sid="1" type="hidden" value="results" />
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<div id="faceted_search" class="facet_hide">
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<h2 class="offscreen_noflow">Result Filters</h2>
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<div class="facet_cont" data-db="gene" data-default_grps="fg_gene-sources,fg_categories,fg_sequence-content,fg_status" data-sd="db:'gene',op:'select',term:'',qk:'41808',linkname:'',idsfromresult:'11994',extra:''"><ul class="facet" data-filter_id="gene-sources" id="_gene-sources"><li class="filter_grp "><div class="clearfix"><h3>Gene sources</h3><a href="#" data-value_id="" class="clear clear_hide">Clear</a></div><ul><li class="fil_val"><a href="#" data-value_id="genomic">Genomic</a></li></ul></li></ul><ul class="facet" data-filter_id="categories" id="_categories"><li class="filter_grp "><div class="clearfix"><h3>Categories</h3><a href="#" data-value_id="" class="clear clear_hide">Clear</a></div><ul><li class="fil_val"><a href="#" data-value_id="alt-splicing">Alternatively spliced</a></li><li class="fil_val"><a href="#" data-value_id="annotated-genes">Annotated genes</a></li><li class="fil_val"><a href="#" data-value_id="gene-type-protein-coding">Protein-coding</a></li></ul></li></ul><ul class="facet" data-filter_id="sequence-content" id="_sequence-content"><li class="filter_grp "><div class="clearfix"><h3>Sequence content</h3><a href="#" data-value_id="" class="clear clear_hide">Clear</a></div><ul><li class="fil_val"><a href="#" data-value_id="seq-ccds">CCDS</a></li><li class="fil_val"><a href="#" data-value_id="seq-ensembl">Ensembl</a></li><li class="fil_val"><a href="#" data-value_id="refseq">RefSeq</a></li></ul></li></ul><ul class="facet" data-filter_id="status" id="_status"><li class="filter_grp "><div class="clearfix"><h3>Status</h3><a href="#" data-value_id="" class="clear clear_show">Clear</a></div><ul><li class="fil_val selected"><a href="#" data-value_id="current-only">Current</a><span class="fcount">(1)</span></li></ul></li></ul><div id="chr-location-facet-wrapper" data-bid="MCID_67d590bcf59ffc792698cfab" data-hid="MCID_67d2a666fe1ad803e8633767" data-qky="41808" class="disabled" style="display:none"><ul class="facet" data-filter_id="chromosomal-region" id="_chromosomal-region" data-of="yes"><li class="filter_grp of_grp"><div class="clearfix"><h3>Chromosome locations</h3><a href="#" data-value_id="" class="clear clear_hide">Clear</a></div><ul><a id="facet_ofchromosomal-region" href="#facet_of_divchromosomal-region" class="jig-ncbipopper" data-jigconfig="triggerPosition: 'middle right', destPosition: 'middle left', hasArrow: true, arrowDirection: 'left', closeEvent : 'click', openEvent: 'click', adjustFit: 'autoAdjust', openAnimation: 'none', closeAnimation: 'none', addCloseButton:true, width: '375px'" data-value_id="fetch_more">more...</a><div id="facet_of_divchromosomal-region" style="display:none;" class="of_popup"><h4>Chromosome locations</h4><label for="organism-filter" style="width:100%;margin-bottom:.2em;" class="">Select an organism by typing or scrolling</label><input type="text" placeholder="Enter text to narrow down the list" id="organism-filter" style="width:98%;" autocomplete="off" /><br /><div id="chr-region-tax-list"><select id="of_chromosomal-region" size="9" class="chr-region-tax-list" style="width:100%;"></select></div><div id="chr-location-info-ctrl" data-disabled="disabled"><div class="chr-field"><label for="chr-name">Chromosome</label><br /><select id="chr-name" class="chr-field" disabled="disabled"></select></div><div class="chr-field"><label for="chr-from">From</label><br /><input type="text" name="chr-from" id="chr-from" disabled="disabled" class="chr-field" /></div><div class="chr-field"><label for="chr-to">To</label><br /><input type="text" name="chr-to" id="chr-to" disabled="disabled" class="chr-field" /></div></div><div class="actions clearfix"><button class="jig-ncbibutton of_add apply-chr" data-jigconfig="'color': 'ui-ncbibutton-blue'">Apply</button></div></div></ul></li></ul></div><ul class="facet facet_reset"><li><a href="#" data-value_id="reset">Clear all</a></li></ul><ul class="facet_tools"><li><a id="more_filter_groups_link" href="#more_filter_groups" class="jig-ncbipopper" data-jigconfig="triggerPosition: 'middle right', destPosition: 'top left', hasArrow: true, arrowDirection: 'left', closeEvent : 'click', openEvent: 'click', adjustFit: 'autoAdjust', openAnimation: 'none', closeAnimation: 'none', addCloseButton:true, width: '180px'">
|
||
Show additional filters</a></li><div id="more_filter_groups" style="display:none;" class="facets_dialog"><button class="ui-ncbipopper-close-button ui-ncbipopper-close-button-generated ui-state-default ui-corner-all ui-button-text-only ui-ncbibutton ui-ncbibutton-blue" generated="true" role="button" aria-disabled="false"><span class="ui-button-text">x</span></button><h4>Additional filters</h4><ul class="filter_groups_more facet"><li><input type="checkbox" id="fg_gene-sources" /><label for="fg_gene-sources">Gene sources</label></li><li><input type="checkbox" id="fg_categories" /><label for="fg_categories">Categories</label></li><li><input type="checkbox" id="fg_sequence-content" /><label for="fg_sequence-content">Sequence content</label></li><li><input type="checkbox" id="fg_status" /><label for="fg_status">Status</label></li><li><input type="checkbox" id="fg_chromosomal-region" /><label for="fg_chromosomal-region">Chromosome locations</label></li><li><input id="fg_field_search" type="checkbox" /><label for="fg_field_search">Search fields</label></li></ul><div class="actions clearfix"><button class="filter_groups_more_apply jig-ncbibutton primary-action" id="filter_groups_apply" data-jigconfig="'color': 'ui-ncbibutton-blue'">Show</button></div></div></ul><input name="EntrezSystem2.PEntrez.Gene.Gene_Facets.FacetsUrlFrag" sid="1" type="hidden" value="filters=current-only" /><input name="EntrezSystem2.PEntrez.Gene.Gene_Facets.FacetSubmitted" sid="1" type="hidden" value="false" /><input name="EntrezSystem2.PEntrez.Gene.Gene_Facets.BMFacets" sid="1" type="hidden" value="" /></div>
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<span style="display: block; text-align: center;">S</span>
|
||
<span style="display: block; text-align: center;">I</span>
|
||
<span style="display: block; text-align: center;">D</span>
|
||
<span style="display: block; text-align: center;">E</span>
|
||
<span style="display: block; text-align: center;">B</span>
|
||
<span style="display: block; text-align: center;">A</span>
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<span style="display: block; text-align: center;">R</span>
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<div class="results_settings one_setting"><ul class="inline_list left display_settings"><li><a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.Display" sid="0" href="#" class="jig-ncbipopper" data-jigconfig="triggerPosition : 'bottom center',destPosition : 'top center',destSelector : '#display_settings_menu_report', hasArrow : false,openEvent : 'click',closeEvent : 'click',isTriggerElementCloseClick: false,addCloseButton : false, groupName: 'entrez_pg'" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.Display">Full Report<span href="#" class="tgt_dark"></span></a></li></ul><div id="display_settings_menu_report" class="disp_settings tabPopper"><fieldset class="format"><legend>Format</legend><ul class="column_list"><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="1" value="full_report" format="" id="full_report" checked="true" /><label for="full_report">Full Report</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="2" value="full_report" format="text" id="full_reporttext" /><label for="full_reporttext">Full Report (text)</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="3" value="expression" format="" id="expression" /><label for="expression">Expression</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="4" value="gene_table" format="" id="gene_table" /><label for="gene_table">Gene Table</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="5" value="gene_table" format="text" id="gene_tabletext" /><label for="gene_tabletext">Gene Table (text)</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="6" value="generif" format="" id="generif" /><label for="generif">GeneRIF</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="7" value="docsum" format="" id="docsum" /><label for="docsum">Summary</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="8" value="docsum" format="text" id="docsumtext" /><label for="docsumtext">Summary (text)</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="9" value="tabular" format="" id="tabular" /><label for="tabular">Tabular</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="10" value="tabular" format="text" id="tabulartext" /><label for="tabulartext">Tabular (text)</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="11" value="asn1" format="text" id="asn1text" /><label for="asn1text">ASN.1</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="12" value="xml" format="text" id="xmltext" /><label for="xmltext">XML</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="13" value="uilist" format="text" id="uilisttext" /><label for="uilisttext">UI List</label></li></ul></fieldset></div><button name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SetDisplay" sid="1" class="button_apply ncbipopper-close-button" style="display:none">Apply</button><h4 class="content_header send_to align_right jig-ncbipopper" id="sendto" data-jigconfig="triggerPosition:'bottom center', destPosition : 'top center',destSelector : '#send_to_menu', hasArrow : false, openEvent : 'click',closeEvent : 'click', isTriggerElementCloseClick: false, addCloseButton:true, groupName: 'entrez_pg', adjustFit:'none'"><a href="#" sourceContent="send_to_menu" class="tgt_dark">Send to:</a><script type="text/javascript">
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||
jQuery(document).ready( function () {
|
||
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||
var selectedValue = jQuery(this).val().toLowerCase();
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if(selectedDiv.is(":hidden")){
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jQuery("#send_to_menu div.submenu:visible").slideUp();
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selectedDiv.slideDown();
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}
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});
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});
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||
jQuery("#sendto").bind("ncbipopperclose", function(){
|
||
jQuery("#send_to_menu div.submenu:visible").css("display","none");
|
||
jQuery("#send_to_menu input[type='radio']:checked").attr("checked",false);
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||
});
|
||
|
||
</script></h4><div id="send_to_menu" class="tabPopper send_to"><fieldset><legend>Choose Destination</legend><ul class="column_list"><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SendTo" sid="1" value="File" id="dest_File" /><label for="dest_File">File</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SendTo" sid="2" value="AddToClipboard" id="dest_AddToClipboard" /><label for="dest_AddToClipboard">Clipboard</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SendTo" sid="3" value="AddToCollections" id="dest_AddToCollections" /><label for="dest_AddToCollections">Collections</label></li></ul></fieldset><div class="submenu file" id="submenu_File" style="display: none;"><p id="submenu_File_hint" class="hidden"></p><ul><li><label for="file_format">Format</label><select id="file_format" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.FFormat" sid="1"><option value="full_report" format="text" selected="selected">Full Report (text)</option><option value="gene_table" format="text">Gene Table (text)</option><option value="docsum" format="text">Summary (text)</option><option value="tabular" format="text">Tabular (text)</option><option value="asn1" format="text">ASN.1</option><option value="xml" format="text">XML</option><option value="uilist" format="text">UI List</option></select></li></ul><button name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SendToSubmit" sid="1" class="button_apply file ncbipopper-close-button" type="submit" cmd="File">Create File</button></div><div class="submenu addtoclipboard" id="submenu_AddToClipboard" style="display: none;"><p id="submenu_AddToClipboard_hint" class="hidden"></p><button name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SendToSubmit" sid="2" class="button_apply clipboard ncbipopper-close-button" type="submit" cmd="AddToClipboard">Add to Clipboard</button></div><div class="submenu addtocollections" id="submenu_AddToCollections" style="display: none;"><p id="submenu_AddToCollections_hint" class="hidden"></p><button name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SendToSubmit" sid="3" class="button_apply collections ncbipopper-close-button" type="submit" cmd="AddToCollections">Add to Collections</button></div></div><div><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.FileFormat" sid="1" type="hidden" value="full_report" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.LastPresentation" sid="1" type="hidden" value="full_report" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.Presentation" sid="1" type="hidden" value="full_report" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.PageSize" sid="1" type="hidden" value="20" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.LastPageSize" sid="1" type="hidden" value="20" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.Sort" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.LastSort" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.FileSort" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.Format" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.LastFormat" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.PrevPageSize" sid="1" type="hidden" value="20" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.PrevPresentation" sid="1" type="hidden" value="full_report" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.PrevSort" sid="1" type="hidden" value="" /><input type="hidden" id="coll_startindex" name="CollectionStartIndex" value="1" /></div></div>
|
||
<div>
|
||
|
||
|
||
|
||
</div>
|
||
<div class="">
|
||
<div><span id="result_sel" class="nowrap"></span><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_ResultsController.ResultCount" sid="1" type="hidden" id="resultcount" value="1" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_ResultsController.RunLastQuery" sid="1" type="hidden" /></div>
|
||
|
||
</div>
|
||
<div id="messagearea" class="empty">
|
||
|
||
|
||
|
||
|
||
</div>
|
||
<div class="rprt full-rprt">
|
||
<div>
|
||
<div class="rprt-header">
|
||
<input type="hidden" id="gene-tax-id" value="10090" />
|
||
<h1 class="title" id="gene-name"><span class="gn" style="padding-right:.5em;">Pcdh15</span> protocadherin 15 [ <em class="tax">Mus musculus</em> (house mouse)
|
||
]
|
||
</h1>
|
||
<span class="geneid">Gene ID: 11994, updated on
|
||
8-Mar-2025</span>
|
||
</div>
|
||
<div class="download-datasets">
|
||
<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/axios/0.23.0/axios.min.js"></script>
|
||
<h4 class="download-datasets-popper jig-ncbipopper" id="download-asm" style="align-self:start" data-jigconfig="triggerPosition:'bottom center', destPosition : 'top center',destSelector : '#download-datasets-popper-menu', hasArrow : false, openEvent : 'click',closeEvent : 'click', isTriggerElementCloseClick: false, groupName: 'entrez_pg', adjustFit:'none'" role="button" aria-expanded="false" aria-haspopup="true">
|
||
<svg alt="download" class="dlbtn-icon" x="0px" y="0px" width="15px" height="15px" viewBox="0 0 60 60" enable-background="new 0 0 60 60" xml:space="preserve">
|
||
<g>
|
||
<polygon points="48.75,36.25 48.75,48.75 11.25,48.75 11.25,36.25 5,36.25 5,55 55,55 55,36.25 "></polygon>
|
||
<polygon points="42.5,23.75 36.25,23.75 36.25,5 23.75,5 23.75,23.75 17.5,23.75 30,42.5 "></polygon>
|
||
</g>
|
||
</svg>
|
||
<a href="#">Download Datasets</a>
|
||
</h4>
|
||
<div id="download-datasets-popper-menu" style="display:none;">
|
||
<div class="input-group">
|
||
<input type="checkbox" id="datasets-ft-gene-seq-fasta" value="FASTA_GENE" checked="checked" class="download-datasets-included-seq" />
|
||
<label for="datasets-ft-gene-seq-fasta">Gene Sequences (FASTA)</label>
|
||
</div>
|
||
<div class="input-group">
|
||
<input type="checkbox" id="datasets-ft-transcript-seq-fasta" value="FASTA_RNA" class="download-datasets-included-seq" />
|
||
<label for="datasets-ft-transcript-seq-fasta">Transcript sequences (FASTA)</label>
|
||
</div>
|
||
<div class="input-group">
|
||
<input type="checkbox" id="datasets-ft-protein-seq-fasta" value="FASTA_PROTEIN" class="download-datasets-included-seq" />
|
||
<label for="datasets-ft-protein-seq-fasta">Protein sequences(FASTA)</label>
|
||
</div>
|
||
<p style="margin-left:5px;">In addition, your package will include a detailed data report in both TSV and JSONL formats.</p>
|
||
<div class="input-group">
|
||
<label for="datasets-download-file-name">File name</label>
|
||
<input type="text" id="datasets-download-file-name" placeholder="Name your file" style="padding:5px;" value="Pcdh15_datasets.zip" />
|
||
</div>
|
||
<input type="hidden" id="download-datasets-base-url" value="https://api.ncbi.nlm.nih.gov/datasets/v2alpha/gene/download" />
|
||
<input type="hidden" id="gene-id-value" value="11994" />
|
||
<button id="datasets-download-submit" data-ga-action="click_begin_download" data-ga-label="download" class="jig-ncbibutton ui-state-default ui-corner-all ui-button-text-only ui-ncbibutton ui-ncbibutton-gray" role="button">
|
||
<span class="ui-button-text">Download</span>
|
||
</button>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="rprt-body">
|
||
|
||
|
||
<div class="rprt-section gene-summary">
|
||
<section class="rprt-section-header" id="summary">
|
||
<h2 id="header-summary">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-summary .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Summary</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.Summary_2" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<div id="summaryDiv" class="section">
|
||
<dl id="summaryDl">
|
||
<dt class="noline"> Official
|
||
Symbol</dt>
|
||
<dd class="noline">Pcdh15<span class="prov">provided by <a href="http://www.informatics.jax.org/mgihome/nomen/" target="_blank" title="Mouse Genome Informatics">MGI</a></span></dd>
|
||
<dt> Official
|
||
Full Name</dt>
|
||
<dd>protocadherin 15<span class="prov">provided by <a href="http://www.informatics.jax.org/mgihome/nomen/" target="_blank" title="Mouse Genome Informatics">MGI</a></span></dd>
|
||
<dt>Primary source</dt>
|
||
<dd>
|
||
<a href="http://www.informatics.jax.org/marker/MGI:1891428" data-gblink-text="Ensembl">MGI:MGI:1891428</a>
|
||
</dd>
|
||
<dt>See related</dt>
|
||
<dd>
|
||
<a href="http://www.ensembl.org/id/ENSMUSG00000052613" data-gblink-text="Ensembl" class="genome-browser-link" data-genome-browser-link-sort="5" data-gb-url="http://www.ensembl.org/loc/ENSMUSG00000052613">Ensembl:ENSMUSG00000052613</a>
|
||
<a href="https://www.alliancegenome.org/gene/MGI:1891428" data-gblink-text="Ensembl" ref="ordinalpos=1&ncbi_uid=11994&link_uid=MGI:1891428">AllianceGenome:MGI:1891428</a>
|
||
</dd>
|
||
<dt>Gene type</dt>
|
||
<dd>protein coding</dd>
|
||
<dt>RefSeq status</dt>
|
||
<dd>VALIDATED</dd>
|
||
<dt>Organism</dt>
|
||
<dd class="tax">
|
||
<a href="/Taxonomy/Browser/wwwtax.cgi?id=10090" ref="ordinalpos=1&ncbi_uid=11994&link_uid=10090">Mus musculus</a>
|
||
</dd>
|
||
<dt>Lineage</dt>
|
||
<dd class="tax">Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus</dd>
|
||
<dt>Also known as</dt>
|
||
<dd>av; roda; Ush1f; nmf19; Gm9815</dd>
|
||
<dt>Summary</dt>
|
||
<dd>Predicted to enable calcium ion binding activity. Acts upstream of or within several processes, including adult walking behavior; detection of mechanical stimulus involved in sensory perception; and plasma membrane bounded cell projection organization. Located in cytoplasm; photoreceptor outer segment; and plasma membrane. Is active in stereocilium. Is expressed in several structures, including central nervous system; gut epithelium; metanephros; sensory organ; and vibrissa follicle. Used to study Usher syndrome type 1F and autosomal recessive nonsyndromic deafness 23. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; Usher syndrome type 1F; and autosomal recessive nonsyndromic deafness 23. Orthologous to human PCDH15 (protocadherin related 15). [provided by Alliance of Genome Resources, Mar 2025]</dd>
|
||
<dt>Expression</dt>
|
||
<dd>Biased expression in frontal lobe adult (RPKM 1.4), CNS E18 (RPKM 1.1) and 9 other tissues <a href="#gene-expression">See more</a></dd>
|
||
<dt>Orthologs</dt>
|
||
<dd class="ortholog-links">
|
||
<a href="https://www.ncbi.nlm.nih.gov/gene/65217">human</a>
|
||
<a href="/gene/65217/ortholog/">all</a>
|
||
</dd>
|
||
<dt style="padding-top:.5em;">
|
||
<span class="new-icon">NEW</span>
|
||
</dt>
|
||
<dd style="padding-top:.5em;">
|
||
<strong>Try the new <a href="https://www.ncbi.nlm.nih.gov/datasets/gene/id/11994/" data-ga-category="summary" data-ga-action="click_datasets_link" data-ga-label="gene_table" title="View selected attributes for an input list of genes and download datasets containing genomic, transcript and protein sequences along with a detailed data report.">Gene table</a></strong>
|
||
<br />
|
||
<strong>Try the new <a href="https://www.ncbi.nlm.nih.gov/datasets/gene/id/11994/products/" data-ga-category="summary" data-ga-action="click_datasets_link" data-ga-label="transcript_table" title="View selected attributes for an input list of genes and download datasets containing genomic, transcript and protein sequences along with a detailed data report.">Transcript table</a></strong>
|
||
</dd>
|
||
</dl>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div class="rprt-section gene-genomic-context">
|
||
<section class="rprt-section-header" id="genomic-context">
|
||
<h2 id="header-genomic-context">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-genomic-context .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Genomic context</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.Genomic_Context" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<div class="gc_cont">
|
||
<div class="gt_cont_contents">
|
||
<div style="float:right"><span>See Pcdh15 in </span><a href="/genome/gdv/?context=gene&acc=11994" class="link-to-gdv genome-browser-link" data-genome-browser-link-sort="1" data-acc="GCF_000001635.27">Genome Data Viewer</a> </div>
|
||
<dl class="dl-chr-info" style="float:left;margin-top:0;">
|
||
<dt>Location: </dt>
|
||
<dd>
|
||
<span style="display:inline-block;">10 B5.3; 10 37.43 cM</span>
|
||
</dd>
|
||
</dl>
|
||
</div>
|
||
<dl class="dl-chr-info exon-count">
|
||
<dt>Exon count: </dt>
|
||
<dd>49</dd>
|
||
</dl>
|
||
<div class="ui-ncbigrid-outer-div" id="genomic-context-tbl-location">
|
||
<div class="ui-ncbigrid-inner-div">
|
||
<table class="jig-ncbigrid" data-jigconfig="">
|
||
<thead>
|
||
<tr>
|
||
<th style="max-width:15%">Annotation release</th>
|
||
<th style="max-width:10%">Status</th>
|
||
<th>Assembly</th>
|
||
<th>
|
||
<span title="Chromosome">Chr</span>
|
||
</th>
|
||
<th>Location</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
<tr>
|
||
<td>RS_2024_02</td>
|
||
<td>current</td>
|
||
<td>GRCm39 (<a href="/assembly/GCF_000001635.27/" ref="ncbi_uid=11994&link_uid=GCF_000001635.27">GCF_000001635.27</a>)</td>
|
||
<td>10</td>
|
||
<td>NC_000076.7 (72932003..74485663) </td>
|
||
</tr>
|
||
<tr>
|
||
<td>108.20200622</td>
|
||
<td>previous assembly</td>
|
||
<td>GRCm38.p6 (<a href="/assembly/GCF_000001635.26/" ref="ncbi_uid=11994&link_uid=GCF_000001635.26">GCF_000001635.26</a>)</td>
|
||
<td>10</td>
|
||
<td>NC_000076.6 (73096277..74649831) </td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
<p class="withnote margin_t2em"><strong>Chromosome 10 - NC_000076.7</strong><img usemap="#nbrMap11994_1877089959" border="0" alt="Genomic Context describing neighboring genes" src="/gutils/geneneighb.fcgi?geneid=11994&nuc_gi=1877089959&n0=Gm34776&n1=A330049N07Rik&n2=Pcdh15&n3=Gm5778&n4=LOC131377337&n5=LOC131377338&n6=Gm19168&n7=LOC131377339&n8=Gm6407&n9=LOC131377340&n10=Gm40691&n11=LOC131377341&n12=LOC131377342&n13=LOC131377343&n14=LOC131377344&n15=LOC131377345&n16=LOC131377346&n17=LOC131377347&n18=LOC131377348&n19=LOC131377349&n20=Gm7034&n21=Gm6419" /><map name="nbrMap11994_1877089959" id="nbrMap11994_1877089959">
|
||
<area shape="rect" onMouseOver="showtip(this,event,'RIKEN cDNA A330049N07 gene')" onMouseOut="hidetip()" coords="3,23,91,31" alt="Neighboring gene RIKEN cDNA A330049N07 gene" href="/gene/327768" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'predicted gene, 34776')" onMouseOut="hidetip()" coords="27,35,72,43" alt="Neighboring gene predicted gene, 34776" href="/gene/102638141" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_27128')" onMouseOut="hidetip()" coords="52,47,122,55" alt="Neighboring gene STARR-seq mESC enhancer starr_27128" href="/gene/131377337" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_27130')" onMouseOut="hidetip()" coords="74,35,144,43" alt="Neighboring gene STARR-seq mESC enhancer starr_27130" href="/gene/131377338" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'heterogeneous nuclear ribonucleoprotein A2/B1 pseudogene')" onMouseOut="hidetip()" coords="81,71,121,79" alt="Neighboring gene heterogeneous nuclear ribonucleoprotein A2/B1 pseudogene" href="/gene/544705" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_27131')" onMouseOut="hidetip()" coords="95,23,165,31" alt="Neighboring gene STARR-seq mESC enhancer starr_27131" href="/gene/131377339" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'TPX2, microtubule-associated protein homolog pseudogene')" onMouseOut="hidetip()" coords="108,83,153,91" alt="Neighboring gene TPX2, microtubule-associated protein homolog pseudogene" href="/gene/100418377" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_27132')" onMouseOut="hidetip()" coords="156,35,226,43" alt="Neighboring gene STARR-seq mESC enhancer starr_27132" href="/gene/131377340" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'ferritin light chain 1 pseudogene')" onMouseOut="hidetip()" coords="172,23,212,31" alt="Neighboring gene ferritin light chain 1 pseudogene" href="/gene/623191" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_27134')" onMouseOut="hidetip()" coords="248,23,318,31" alt="Neighboring gene STARR-seq mESC enhancer starr_27134" href="/gene/131377341" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'predicted gene, 40691')" onMouseOut="hidetip()" coords="249,35,294,43" alt="Neighboring gene predicted gene, 40691" href="/gene/105245206" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_27135')" onMouseOut="hidetip()" coords="255,47,325,55" alt="Neighboring gene STARR-seq mESC enhancer starr_27135" href="/gene/131377342" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_27136')" onMouseOut="hidetip()" coords="277,71,347,79" alt="Neighboring gene STARR-seq mESC enhancer starr_27136" href="/gene/131377343" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_27137')" onMouseOut="hidetip()" coords="282,83,352,91" alt="Neighboring gene STARR-seq mESC enhancer starr_27137" href="/gene/131377344" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_27138')" onMouseOut="hidetip()" coords="296,35,366,43" alt="Neighboring gene STARR-seq mESC enhancer starr_27138" href="/gene/131377345" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_27139')" onMouseOut="hidetip()" coords="298,95,368,103" alt="Neighboring gene STARR-seq mESC enhancer starr_27139" href="/gene/131377346" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_27141')" onMouseOut="hidetip()" coords="324,23,394,31" alt="Neighboring gene STARR-seq mESC enhancer starr_27141" href="/gene/131377347" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_27142')" onMouseOut="hidetip()" coords="333,47,403,55" alt="Neighboring gene STARR-seq mESC enhancer starr_27142" href="/gene/131377348" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_27143')" onMouseOut="hidetip()" coords="334,107,404,115" alt="Neighboring gene STARR-seq mESC enhancer starr_27143" href="/gene/131377349" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'high mobility group box 1-like pseudogene')" onMouseOut="hidetip()" coords="383,35,423,43" alt="Neighboring gene high mobility group box 1-like pseudogene" href="/gene/630453" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'predicted gene 6419')" onMouseOut="hidetip()" coords="383,71,423,79" alt="Neighboring gene predicted gene 6419" href="/gene/623346" />
|
||
</map>
|
||
</p>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="rprt-section gene-genomic-regions-transcripts-products">
|
||
<section class="rprt-section-header" id="genomic-regions-transcripts-products">
|
||
<h2 id="header-genomic-regions-transcripts-products">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-genomic-regions-transcripts-products .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Genomic regions, transcripts, and products</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.Genomic_Regions_Transcripts_a" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<div>
|
||
<div style="text-align:right;">Go to <a href="#reference-sequences">reference sequence details</a></div>
|
||
</div>
|
||
<div>
|
||
<p class="choose">
|
||
<label for="accession" class="label">Genomic Sequence: </label>
|
||
<select name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_GenomicProductsP.accessionList" sid="1" id="accessionList" data-taxid="10090" data-geneid="11994">
|
||
<option value="NC_000076.7_72932002_74485662">NC_000076.7 Chromosome 10 Reference GRCm39 C57BL/6J</option>
|
||
<option value="NC_000076.6_73096276_74649830">NC_000076.6 Chromosome 10 Reference GRCm38.p6 C57BL/6J</option>
|
||
</select>
|
||
</p>
|
||
</div>
|
||
<div id="NC_000076" class="divAccession">
|
||
<div class="seq-viewer">
|
||
<p class="note-link">
|
||
<strong>Go to nucleotide:</strong>
|
||
<a title="Nucleotide Graphic report" href="/nuccore/NC_000076.7?report=graph&from=72698953&to=74718711&app_context=Gene&assm_context=GCF_000001635.27" ref="ordinalpos=1&ncbi_uid=11994&link_uid=NC_000076.7">Graphics</a>
|
||
<a title="Nucleotide FASTA report" href="/nuccore/NC_000076.7?report=fasta&from=72932003&to=74485663" ref="ordinalpos=1&ncbi_uid=11994&link_uid=NC_000076.7">FASTA</a>
|
||
<a title="Nucleotide GenBank report" href="/nuccore/NC_000076.7?report=genbank&from=72932003&to=74485663" ref="ordinalpos=1&ncbi_uid=11994&link_uid=NC_000076.7">GenBank</a>
|
||
</p>
|
||
<div id="divNC_000076" class="SeqViewerApp" style="clear:both;" data-sv="appname=ncbigene&embedded=true&noslider=1&id=NC_000076.7&from=72698953&to=74718711&app_context=Gene&assm_context=GCF_000001635.27">
|
||
<a href="?appname=ncbigene&embedded=true&noslider=1&id=NC_000076.7&from=72698953&to=74718711&app_context=Gene&assm_context=GCF_000001635.27"></a>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
<input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_GenomicProductsP.nucleotideLink_NC_000076.7" sid="1" type="hidden" id="nucleotideLink_NC_000076_7_72932002_74485662" value="<p class="note-link"><strong>Go to nucleotide:</strong><a title="Nucleotide Graphic report" href="/nuccore/NC_000076.7?report=graph&amp;from=72698953&amp;to=74718711&amp;app_context=Gene&amp;assm_context=GCF_000001635.27" ref="ordinalpos=1&amp;ncbi_uid=11994&amp;link_uid=NC_000076.7">Graphics</a><a title="Nucleotide FASTA report" href="/nuccore/NC_000076.7?report=fasta&amp;from=72932003&amp;to=74485663" ref="ordinalpos=1&amp;ncbi_uid=11994&amp;link_uid=NC_000076.7">FASTA</a><a title="Nucleotide GenBank report" href="/nuccore/NC_000076.7?report=genbank&amp;from=72932003&amp;to=74485663" ref="ordinalpos=1&amp;ncbi_uid=11994&amp;link_uid=NC_000076.7">GenBank</a></p>" />
|
||
<input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_GenomicProductsP.relString_NC_000076.7" sid="1" type="hidden" id="relString_NC_000076_7_72932002_74485662" value="appname=ncbigene&amp;embedded=true&amp;noslider=1&amp;id=NC_000076.7&amp;from=72698953&amp;to=74718711&amp;app_context=Gene&amp;assm_context=GCF_000001635.27" />
|
||
<input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_GenomicProductsP.nucleotideLink_NC_000076.6" sid="1" type="hidden" id="nucleotideLink_NC_000076_6_73096276_74649830" value="<p class="note-link"><strong>Go to nucleotide:</strong><a title="Nucleotide Graphic report" href="/nuccore/NC_000076.6?report=graph&amp;from=72863243&amp;to=74882863&amp;app_context=Gene&amp;assm_context=GCF_000001635.26" ref="ordinalpos=1&amp;ncbi_uid=11994&amp;link_uid=NC_000076.6">Graphics</a><a title="Nucleotide FASTA report" href="/nuccore/NC_000076.6?report=fasta&amp;from=73096277&amp;to=74649831" ref="ordinalpos=1&amp;ncbi_uid=11994&amp;link_uid=NC_000076.6">FASTA</a><a title="Nucleotide GenBank report" href="/nuccore/NC_000076.6?report=genbank&amp;from=73096277&amp;to=74649831" ref="ordinalpos=1&amp;ncbi_uid=11994&amp;link_uid=NC_000076.6">GenBank</a></p>" />
|
||
<input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_GenomicProductsP.relString_NC_000076.6" sid="1" type="hidden" id="relString_NC_000076_6_73096276_74649830" value="appname=ncbigene&amp;embedded=true&amp;noslider=1&amp;id=NC_000076.6&amp;from=72863243&amp;to=74882863&amp;app_context=Gene&amp;assm_context=GCF_000001635.26" />
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div class="rprt-section gene-gene-expression">
|
||
<section class="rprt-section-header" id="gene-expression">
|
||
<h2 id="header-gene-expression">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-gene-expression .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Expression</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.Expression" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<div>
|
||
<div style="text-align:right;">
|
||
<a href="/gene/11994/?report=expression" data-url="/gene/11994/?report=expression" id="gene-expression-see-details">See details</a>
|
||
</div>
|
||
<div id="gene-expression-app" data-url="https://www.ncbi.nlm.nih.gov/gene/11994" data-report-type="summary">
|
||
<div>
|
||
<script type="text/javascript">
|
||
|
||
window.tissues_data = {'liver E14': {'id': '11994_SAMN01164143', 'gene': 11994, 'sample_id': 'SAMN01164143', 'source_name': 'liver E14', 'var': 0.0, 'full_rpkm': 0.00524769, 'exp_rpkm': 0.00525, 'exp_total': 11589, 'project_desc': 'PRJNA66167', '_version_': 1785731959609098268}, 'CNS E11.5': {'id': '11994_SAMN01164142', 'gene': 11994, 'sample_id': 'SAMN01164142', 'source_name': 'CNS E11.5', 'var': 0.0, 'full_rpkm': 0.0829795, 'exp_rpkm': 0.083, 'exp_total': 163279, 'project_desc': 'PRJNA66167', '_version_': 1785731959609098269}, 'whole brain E14.5': {'id': '11994_SAMN01164141', 'gene': 11994, 'sample_id': 'SAMN01164141', 'source_name': 'whole brain E14.5', 'var': 0.0, 'full_rpkm': 0.531942, 'exp_rpkm': 0.532, 'exp_total': 933163, 'project_desc': 'PRJNA66167', '_version_': 1785731959609098270}, 'liver E14.5': {'id': '11994_SAMN01164140', 'gene': 11994, 'sample_id': 'SAMN01164140', 'source_name': 'liver E14.5', 'var': 0.0, 'full_rpkm': 0.00483443, 'exp_rpkm': 0.00483, 'exp_total': 7355, 'project_desc': 'PRJNA66167', '_version_': 1785731959609098271}, 'CNS E18': {'id': '11994_SAMN01164139', 'gene': 11994, 'sample_id': 'SAMN01164139', 'source_name': 'CNS E18', 'var': 0.0, 'full_rpkm': 1.08819, 'exp_rpkm': 1.09, 'exp_total': 2095291, 'project_desc': 'PRJNA66167', '_version_': 1785731959609098272}, 'CNS E14': {'id': '11994_SAMN01164138', 'gene': 11994, 'sample_id': 'SAMN01164138', 'source_name': 'CNS E14', 'var': 0.0, 'full_rpkm': 0.452774, 'exp_rpkm': 0.453, 'exp_total': 898865, 'project_desc': 'PRJNA66167', '_version_': 1785731959609098273}, 'limb E14.5': {'id': '11994_SAMN01164137', 'gene': 11994, 'sample_id': 'SAMN01164137', 'source_name': 'limb E14.5', 'var': 0.0, 'full_rpkm': 0.0746325, 'exp_rpkm': 0.0746, 'exp_total': 133213, 'project_desc': 'PRJNA66167', '_version_': 1785731959609098274}, 'cerebellum adult': {'id': '11994_SAMN01164136', 'gene': 11994, 'sample_id': 'SAMN01164136', 'source_name': 'cerebellum adult', 'var': 0.0, 'full_rpkm': 0.350175, 'exp_rpkm': 0.35, 'exp_total': 486409, 'project_desc': 'PRJNA66167', '_version_': 1785731959609098275}, 'liver E18': {'id': '11994_SAMN01164135', 'gene': 11994, 'sample_id': 'SAMN01164135', 'source_name': 'liver E18', 'var': 0.0, 'full_rpkm': 0.00374168, 'exp_rpkm': 0.00374, 'exp_total': 8414, 'project_desc': 'PRJNA66167', '_version_': 1785731959609098276}, 'placenta adult': {'id': '11994_SAMN01164134', 'gene': 11994, 'sample_id': 'SAMN01164134', 'source_name': 'placenta adult', 'var': 0.0, 'full_rpkm': 0.00194991, 'exp_rpkm': 0.00195, 'exp_total': 4879, 'project_desc': 'PRJNA66167', '_version_': 1785731959609098277}, 'bladder adult': {'id': '11994_SAMN01164133', 'gene': 11994, 'sample_id': 'SAMN01164133', 'source_name': 'bladder adult', 'var': 0.0, 'full_rpkm': 0.00940054, 'exp_rpkm': 0.0094, 'exp_total': 15017, 'project_desc': 'PRJNA66167', '_version_': 1785731959609098278}, 'cortex adult': {'id': '11994_SAMN01164132', 'gene': 11994, 'sample_id': 'SAMN01164132', 'source_name': 'cortex adult', 'var': 0.0, 'full_rpkm': 0.940024, 'exp_rpkm': 0.94, 'exp_total': 1462250, 'project_desc': 'PRJNA66167', '_version_': 1785731959609098279}, 'frontal Lobe adult': {'id': '11994_SAMN01164131', 'gene': 11994, 'sample_id': 'SAMN01164131', 'source_name': 'frontal Lobe adult', 'var': 0.0, 'full_rpkm': 1.377, 'exp_rpkm': 1.38, 'exp_total': 2237247, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146816}, 'heart adult': {'id': '11994_SAMN00849390', 'gene': 11994, 'sample_id': 'SAMN00849390', 'source_name': 'heart adult', 'var': 0.0, 'full_rpkm': 0.0248276, 'exp_rpkm': 0.0248, 'exp_total': 14970, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146817}, 'colon adult': {'id': '11994_SAMN00849389', 'gene': 11994, 'sample_id': 'SAMN00849389', 'source_name': 'colon adult', 'var': 0.0, 'full_rpkm': 0.0174301, 'exp_rpkm': 0.0174, 'exp_total': 9672, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146818}, 'spleen adult': {'id': '11994_SAMN00849388', 'gene': 11994, 'sample_id': 'SAMN00849388', 'source_name': 'spleen adult', 'var': 0.0, 'full_rpkm': 0.0690876, 'exp_rpkm': 0.0691, 'exp_total': 49670, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146819}, 'lung adult': {'id': '11994_SAMN00849387', 'gene': 11994, 'sample_id': 'SAMN00849387', 'source_name': 'lung adult', 'var': 0.0, 'full_rpkm': 0.0025682, 'exp_rpkm': 0.00257, 'exp_total': 1381, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146820}, 'liver adult': {'id': '11994_SAMN00849386', 'gene': 11994, 'sample_id': 'SAMN00849386', 'source_name': 'liver adult', 'var': 0.0, 'full_rpkm': 0.0011451, 'exp_rpkm': 0.00115, 'exp_total': 876, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146821}, 'kidney adult': {'id': '11994_SAMN00849385', 'gene': 11994, 'sample_id': 'SAMN00849385', 'source_name': 'kidney adult', 'var': 0.0, 'full_rpkm': 0.00563621, 'exp_rpkm': 0.00564, 'exp_total': 4850, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146822}, 'testis adult': {'id': '11994_SAMN00849384', 'gene': 11994, 'sample_id': 'SAMN00849384', 'source_name': 'testis adult', 'var': 0.0, 'full_rpkm': 0.0959601, 'exp_rpkm': 0.096, 'exp_total': 59427, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146823}, 'thymus adult': {'id': '11994_SAMN00849383', 'gene': 11994, 'sample_id': 'SAMN00849383', 'source_name': 'thymus adult', 'var': 0.0, 'full_rpkm': 0.0279409, 'exp_rpkm': 0.0279, 'exp_total': 21787, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146824}, 'subcutaneous fat pad adult': {'id': '11994_SAMN00849382', 'gene': 11994, 'sample_id': 'SAMN00849382', 'source_name': 'subcutaneous fat pad adult', 'var': 0.0, 'full_rpkm': 0.00274644, 'exp_rpkm': 0.00275, 'exp_total': 1790, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146825}, 'genital fat pad adult': {'id': '11994_SAMN00849381', 'gene': 11994, 'sample_id': 'SAMN00849381', 'source_name': 'genital fat pad adult', 'var': 0.0, 'full_rpkm': 0.000865259, 'exp_rpkm': 0.000865, 'exp_total': 563, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146826}, 'Large Intestine adult': {'id': '11994_SAMN00849380', 'gene': 11994, 'sample_id': 'SAMN00849380', 'source_name': 'Large Intestine adult', 'var': 0.0, 'full_rpkm': 0.0159359, 'exp_rpkm': 0.0159, 'exp_total': 10365, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146827}, 'adrenal adult': {'id': '11994_SAMN00849379', 'gene': 11994, 'sample_id': 'SAMN00849379', 'source_name': 'adrenal adult', 'var': 0.0, 'full_rpkm': 0.0357323, 'exp_rpkm': 0.0357, 'exp_total': 21120, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146828}, 'duodenum adult': {'id': '11994_SAMN00849378', 'gene': 11994, 'sample_id': 'SAMN00849378', 'source_name': 'duodenum adult', 'var': 0.0, 'full_rpkm': 0.000258425, 'exp_rpkm': 0.000258, 'exp_total': 152, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146829}, 'small intestine adult': {'id': '11994_SAMN00849377', 'gene': 11994, 'sample_id': 'SAMN00849377', 'source_name': 'small intestine adult', 'var': 0.0, 'full_rpkm': 0.00527643, 'exp_rpkm': 0.00528, 'exp_total': 3161, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146830}, 'stomach adult': {'id': '11994_SAMN00849376', 'gene': 11994, 'sample_id': 'SAMN00849376', 'source_name': 'stomach adult', 'var': 0.0, 'full_rpkm': 0.00222654, 'exp_rpkm': 0.00223, 'exp_total': 1519, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146831}, 'mammary gland adult': {'id': '11994_SAMN00849375', 'gene': 11994, 'sample_id': 'SAMN00849375', 'source_name': 'mammary gland adult', 'var': 0.0, 'full_rpkm': 0.0923491, 'exp_rpkm': 0.0923, 'exp_total': 52542, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146832}, 'ovary adult': {'id': '11994_SAMN00849374', 'gene': 11994, 'sample_id': 'SAMN00849374', 'source_name': 'ovary adult', 'var': 0.0, 'full_rpkm': 0.0197484, 'exp_rpkm': 0.0197, 'exp_total': 8752, 'project_desc': 'PRJNA66167', '_version_': 1785731959610146833}};
|
||
|
||
|
||
|
||
|
||
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|
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window.taxId = 10090
|
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</script>
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<div>
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<select name="p" id="project-selector">
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<option value="iSRP012040" selected="selected" data-bioproject="PRJNA66167">
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|
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Mouse ENCODE transcriptome data
|
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</option>
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</select>
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<ul id="project-summary">
|
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|
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|
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Mouse ENCODE transcriptome data
|
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|
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</li>
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|
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|
||
<li id="project-summary-desc">Description: RNA profiling data sets generated by the Mouse ENCODE project.</li>
|
||
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|
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|
||
<li id="project-summary-bioprojects">BioProject: <a href="/bioproject/PRJNA66167/">PRJNA66167</a>
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||
</li>
|
||
|
||
<li id="project-summary-pubs">Publication:
|
||
|
||
|
||
<span><a href="/pubmed/25409824/">PMID 25409824</a></span>
|
||
|
||
</li>
|
||
|
||
|
||
<li id="project-summary-analysis-date">Analysis date: n/a</li>
|
||
|
||
</ul>
|
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|
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|
||
|
||
<div id="gene-expr-details" class="expression-chart"></div>
|
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||
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|
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|
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</div>
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<script type="text/javascript" src="https://www.gstatic.com/charts/loader.js"></script>
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google.charts.load('current', {
|
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'packages':[ 'corechart']
|
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</script>
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</div>
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</div>
|
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</div>
|
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|
||
<div class="rprt-section gene-bibliography">
|
||
<section class="rprt-section-header" id="bibliography"><h2 id="header-bibliography"><a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-bibliography .rprt-section-body'"><span class="ui-ncbitoggler-master-text">Bibliography</span></a></h2><div class="rprt-section-tools"><a href="#top" title="Go to the top of the page" class="gene-top-page"><span>Go to the top of the page</span></a><a href="/books/NBK3841/#EntrezGene.Bibliography" title="Help" class="gene-section-help"><span>Help</span></a></div></section>
|
||
<div class="rprt-section-body" style="">
|
||
<div class="generif-pubmed">
|
||
<h3 id="relatedarticlesinpubmed">
|
||
<a href="#" class="jig-ncbitoggler-open">Related articles in PubMed</a>
|
||
</h3>
|
||
<div class="generefbl-link">
|
||
<ol class="generef-link">
|
||
<li>
|
||
<a href="/pubmed/34751129/" ref="ordinalpos=1&ncbi_uid=11994&link_uid=34751129">Proposed therapy, developed in a Pcdh15-deficient mouse, for progressive loss of vision in human Usher syndrome.</a>
|
||
<span class="pubmed-auth-date"> Sethna S, <em>et al</em>. Elife, 2021 Nov 9. PMID 34751129, <span class="pubmed-pmc-link"><a href="/pmc/articles/PMC8577840/" ref="ordinalpos=0&ncbi_uid=11994&link_uid=PMC8577840">Free PMC Article</a></span></span>
|
||
</li>
|
||
<li>
|
||
<a href="/pubmed/29443515/" ref="ordinalpos=2&ncbi_uid=11994&link_uid=29443515">Tuning Inner-Ear Tip-Link Affinity Through Alternatively Spliced Variants of Protocadherin-15.</a>
|
||
<span class="pubmed-auth-date"> Narui Y, <em>et al</em>. Biochemistry, 2018 Mar 20. PMID 29443515, <span class="pubmed-pmc-link"><a href="/pmc/articles/PMC5892193/" ref="ordinalpos=0&ncbi_uid=11994&link_uid=PMC5892193">Free PMC Article</a></span></span>
|
||
</li>
|
||
<li>
|
||
<a href="/pubmed/15952048/" ref="ordinalpos=3&ncbi_uid=11994&link_uid=15952048">Characterization of vestibular dysfunction in the mouse model for Usher syndrome 1F.</a>
|
||
<span class="pubmed-auth-date"> Alagramam KN, <em>et al</em>. J Assoc Res Otolaryngol, 2005 Jun. PMID 15952048, <span class="pubmed-pmc-link"><a href="/pmc/articles/PMC2538330/" ref="ordinalpos=0&ncbi_uid=11994&link_uid=PMC2538330">Free PMC Article</a></span></span>
|
||
</li>
|
||
<li>
|
||
<a href="/pubmed/16408167/" ref="ordinalpos=4&ncbi_uid=11994&link_uid=16408167">Progression of inner ear pathology in Ames waltzer mice and the role of protocadherin 15 in hair cell development.</a>
|
||
<span class="pubmed-auth-date"> Pawlowski KS, <em>et al</em>. J Assoc Res Otolaryngol, 2006 Jun. PMID 16408167, <span class="pubmed-pmc-link"><a href="/pmc/articles/PMC2504581/" ref="ordinalpos=0&ncbi_uid=11994&link_uid=PMC2504581">Free PMC Article</a></span></span>
|
||
</li>
|
||
<li>
|
||
<a href="/pubmed/12939319/" ref="ordinalpos=5&ncbi_uid=11994&link_uid=12939319">Assessment of retinal structure and function in Ames waltzer mice.</a>
|
||
<span class="pubmed-auth-date"> Ball SL, <em>et al</em>. Invest Ophthalmol Vis Sci, 2003 Sep. PMID 12939319</span>
|
||
</li>
|
||
</ol>
|
||
<p class="see-all-pm">
|
||
<a href="/pubmed?LinkName=gene_pubmed&from_uid=11994" title="See all 103 citations in Pubmed">See all (103) citations in PubMed</a>
|
||
</p>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="generif-pubmed generif">
|
||
<h3 id="generifsgenereferencesintofunctions">
|
||
<a href="#" class="jig-ncbitoggler-open">GeneRIFs: Gene References Into Functions</a>
|
||
</h3>
|
||
<div>
|
||
<a href="/gene/about-generif" class="whatisthis">What's a GeneRIF?</a>
|
||
<div class="generefbl-link">
|
||
<ol class="generef-link">
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/38806495" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=11994&link_uid=38806495">Mice with deficiency in Pcdh15, a gene associated with bipolar disorders, exhibit significantly elevated diurnal amplitudes of locomotion and body temperature.</a>
|
||
<div id="gene-popper1" class="gene-rif-popper">Title: Mice with deficiency in Pcdh15, a gene associated with bipolar disorders, exhibit significantly elevated diurnal amplitudes of locomotion and body temperature.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/35830793" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=11994&link_uid=35830793">Template-independent genome editing in the Pcdh15(av-3j) mouse, a model of human DFNB23 nonsyndromic deafness.</a>
|
||
<div id="gene-popper2" class="gene-rif-popper">Title: Template-independent genome editing in the Pcdh15(av-3j) mouse, a model of human DFNB23 nonsyndromic deafness.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/34964715" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=11994&link_uid=34964715">Molecular structures and conformations of protocadherin-15 and its complexes on stereocilia elucidated by cryo-electron tomography.</a>
|
||
<div id="gene-popper3" class="gene-rif-popper">Title: Molecular structures and conformations of protocadherin-15 and its complexes on stereocilia elucidated by cryo-electron tomography.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/33009420" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=11994&link_uid=33009420">Interaction of protocadherin-15 with the scaffold protein whirlin supports its anchoring of hair-bundle lateral links in cochlear hair cells.</a>
|
||
<div id="gene-popper4" class="gene-rif-popper">Title: Interaction of protocadherin-15 with the scaffold protein whirlin supports its anchoring of hair-bundle lateral links in cochlear hair cells.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/30527337" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=11994&link_uid=30527337">Mechanically Weak Extracellular Membrane-Adjacent Domain Induces Dimerization of Protocadherin-15</a>
|
||
<div id="gene-popper5" class="gene-rif-popper">Title: A Mechanically Weak Extracellular Membrane-Adjacent Domain Induces Dimerization of Protocadherin-15.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/30070639" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=11994&link_uid=30070639">LHFPL5 forms extensive interactions with the PCDH15 transmembrane helices and stabilizes the overall PCDH15-LHFPL5 assembly.</a>
|
||
<div id="gene-popper6" class="gene-rif-popper">Title: Structure of mouse protocadherin 15 of the stereocilia tip link in complex with LHFPL5.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/30061390" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=11994&link_uid=30061390">a modified ciliary transport pathway used for Pcdh15 transport into the cilium of the inner ear hair cell and coordinated by FGFR1 activity.</a>
|
||
<div id="gene-popper7" class="gene-rif-popper">Title: FGFR1-mediated protocadherin-15 loading mediates cargo specificity during intraflagellar transport in inner ear hair-cell kinocilia.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/28705869" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=11994&link_uid=28705869">Many GABAergic interneurons, from their generation in the medial ganglionic eminence up to their settlement in the auditory cortex, express two cadherin-related (cdhr) proteins, cdhr23 and cdhr15, that form the hair bundle tip links gating the mechanoelectrical transduction channels.</a>
|
||
<div id="gene-popper8" class="gene-rif-popper">Title: Auditory cortex interneuron development requires cadherins operating hair-cell mechanoelectrical transduction.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/29443515" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=11994&link_uid=29443515">results demonstrate that alternative heterophilic tip-link structures form stable protein-protein interactions in vitro and suggest that homophilic PCDH15-PCDH15 tip links form through the interaction of additional EC repeats</a>
|
||
<div id="gene-popper9" class="gene-rif-popper">Title: Tuning Inner-Ear Tip-Link Affinity Through Alternatively Spliced Variants of Protocadherin-15.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/29261728" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=11994&link_uid=29261728">interactions of wild type (WT) and mutant variants of N-terminal fragments (EC1+2) of cadherin-23 and protocadherin-15, two proteins essential for inner-ear mechanotransduction, are reported.</a>
|
||
<div id="gene-popper10" class="gene-rif-popper">Title: Using thermal scanning assays to test protein-protein interactions of inner-ear cadherins.</div>
|
||
</li>
|
||
</ol>
|
||
</div>
|
||
<div class="submit-genrif">
|
||
<span>Submit:</span>
|
||
<a href="/gene/submit-generif/?geneId=11994&sym=Pcdh15&name=protocadherin 15&org=Mus musculus">New GeneRIF</a>
|
||
<a href="/RefSeq/update.cgi?geneid=11994&symbol=Pcdh15;task=fixpub">Correction</a>
|
||
<a href="https://www.ncbi.nlm.nih.gov/gene?db=gene&report=generif&term=11994" class="seeall-generif">See all GeneRIFs (30)</a>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div class="rprt-section gene-variation">
|
||
<section class="rprt-section-header" id="variation">
|
||
<h2 id="header-variation">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-variation .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Variation</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.variation" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<div class="infosec alleles-subsec">
|
||
<h3 id="alleles">
|
||
<a class="jig-ncbitoggler-open">Alleles</a>
|
||
</h3>
|
||
<div class="geneinfo-subsec">
|
||
<div>Alleles of this type are documented at Mouse Genome Informatics <a title="" href="http://www.informatics.jax.org/allele/summary?markerId=MGI:1891428">(MGI)</a></div>
|
||
<ul class="geneinfo-subsec">
|
||
<li>Chemically induced (ENU) (7)
|
||
<a title="PubMed ID 16972005" href="/pubmed/16972005">1 citation</a></li>
|
||
<li>Endonuclease-mediated (4)
|
||
<a title="PubMed ID 34751129" href="/pubmed/34751129">1 citation</a></li>
|
||
<li>Spontaneous (7)
|
||
<a title="PubMed ID 16887306,35296311" href="/pubmed/16887306,35296311">1 citation</a></li>
|
||
<li>Targeted (6)
|
||
<a title="PubMed ID 21427143" href="/pubmed/21427143">1 citation</a></li>
|
||
<li>Transgenic (1)
|
||
<a title="PubMed ID 10430593" href="/pubmed/10430593">1 citation</a></li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
<set></set>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
|
||
<div class="rprt-section gene-interactions">
|
||
<section class="rprt-section-header" id="interactions">
|
||
<h2 id="header-interactions">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-interactions .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Interactions</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.Interactions" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<table summary="Gene Interaction" class="jig-ncbiservergrid" data-jigconfig="webservice:'/gene/11994/data/interaction/',webserviceParams: 'p$l=Ajax&p$debugoutput=off', isServersideLoad:true, isServersidePaging: true,isServersidePagingCached: true,pageSize:25">
|
||
<thead>
|
||
<tr>
|
||
<th id="inter-prod">Products</th>
|
||
<th id="inter-interactant">Interactant</th>
|
||
<th id="inter-otherGene">Other Gene</th>
|
||
<th id="inter-compl">Complex</th>
|
||
<th id="inter-source">Source</th>
|
||
<th id="inter-pubs">Pubs</th>
|
||
<th id="inter-desc">Description</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody></tbody>
|
||
</table>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div class="rprt-section gene-general-gene-info">
|
||
<section class="rprt-section-header" id="general-gene-info">
|
||
<h2 id="header-general-gene-info">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-general-gene-info .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">General gene information</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.General_Gene_Information" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
|
||
<div class="rprt-section-body" style="">
|
||
<div id="gene-markers">
|
||
<h3 id="markers">
|
||
<a class="jig-ncbitoggler">Markers</a>
|
||
</h3>
|
||
<div>
|
||
<ul class="marker odd">
|
||
<li class="marker">Pcdh15 (e-PCR), detects polymorphism<ul class="marker-link"><li><a href="https://www.ncbi.nlm.nih.gov/probe?term=532117%20%5BUniSTS%20ID%5D" ref="ordinalpos=1&ncbi_uid=11994&link_uid=532117">UniSTS:532117</a></li></ul></li>
|
||
</ul>
|
||
<ul class="marker ">
|
||
<li class="marker">BB078305 (e-PCR)<ul class="marker-link"><li><a href="https://www.ncbi.nlm.nih.gov/probe?term=185837%20%5BUniSTS%20ID%5D" ref="ordinalpos=1&ncbi_uid=11994&link_uid=185837">UniSTS:185837</a></li></ul></li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div></div>
|
||
|
||
<div class="infosec">
|
||
<h3 id="homology">
|
||
<a class="jig-ncbitoggler-open">Homology</a>
|
||
</h3>
|
||
<ul class="geneinfo-subsec">
|
||
<li>
|
||
<a href="/gene/11994/ortholog/" id="ncbi-ortholog-link">NCBI Orthologs</a>
|
||
</li>
|
||
<a href="https://www.orthodb.org/?ncbi=11994" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=8178" target="_blank">
|
||
Orthologs from OrthoDB
|
||
</a>
|
||
</ul>
|
||
</div>
|
||
|
||
<!--<component id="Gene_InfoPathway"/>-->
|
||
|
||
|
||
<div class="gene-ontology infosec">
|
||
<h3 id="gene-ontology">
|
||
<a class="jig-ncbitoggler-open">
|
||
<span>Gene Ontology</span>
|
||
</a>
|
||
<a target="_blank" href="http://www.informatics.jax.org" class="g-ontology-src" title="Provided by MGI">Provided by MGI</a>
|
||
</h3>
|
||
<div class="ontology-tables">
|
||
<div class="ui-ncbigrid-outer-div">
|
||
<div class="ui-ncbigrid-inner-div">
|
||
<table class="jig-ncbigrid" data-jigconfig="isPageable: true, pageSize : 25, isSortable: true, columnTypes: ['str', 'str', 'str']">
|
||
<thead>
|
||
<tr>
|
||
<th class="col1">Function</th>
|
||
<th style="width:12%;">Evidence Code</th>
|
||
<th style="width:10%;">Pubs</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
<tr>
|
||
<td headers="ont-func">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0005509">enables calcium ion binding</a>
|
||
</td>
|
||
<td headers="ont-evi- ont-evi-code-">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-1-0', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IEA</a>
|
||
<div id="evidence-code-1-0" class="ecode">Inferred from Electronic Annotation<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi- ont-pub-"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-func">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0005515">enables protein binding</a>
|
||
</td>
|
||
<td headers="ont-evi- ont-evi-code-">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-2-0', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IPI</a>
|
||
<div id="evidence-code-2-0" class="ecode">Inferred from Physical Interaction<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi- ont-pub-"><a href="/pubmed/15590703,15928608,16301216,16481439,17805295,19270079,20498078,23135401,23217710,25114259,28504928,38228630" target="_blank" title="PubMed ID 15590703,15928608,16301216,16481439,17805295,19270079,20498078,23135401,23217710,25114259,28504928,38228630" ref="ordinalpos=1&ncbi_uid=11994&link_uid=15590703,15928608,16301216,16481439,17805295,19270079,20498078,23135401,23217710,25114259,28504928,38228630">PubMed</a> </td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
</div>
|
||
<div class="ui-ncbigrid-outer-div">
|
||
<div class="ui-ncbigrid-inner-div">
|
||
<table class="jig-ncbigrid" data-jigconfig="isPageable: true, pageSize : 25, isSortable: true, columnTypes: ['str', 'str', 'str']">
|
||
<thead>
|
||
<tr>
|
||
<th class="col1">Process</th>
|
||
<th style="width:12%;">Evidence Code</th>
|
||
<th style="width:10%;">Pubs</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0007015">acts_upstream_of_or_within actin filament organization</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-1-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-1-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/11124469" target="_blank" title="PubMed ID 11124469" ref="ordinalpos=1&ncbi_uid=11994&link_uid=11124469">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0008344">acts_upstream_of_or_within adult locomotory behavior</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-2-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-2-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0007628">acts_upstream_of_or_within adult walking behavior</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-3-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-3-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/11124469" target="_blank" title="PubMed ID 11124469" ref="ordinalpos=1&ncbi_uid=11994&link_uid=11124469">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0060088">acts_upstream_of_or_within auditory receptor cell stereocilium organization</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-4-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IGI</a>
|
||
<div id="evidence-code-4-1" class="ecode">Inferred from Genetic Interaction<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/15537665" target="_blank" title="PubMed ID 15537665" ref="ordinalpos=1&ncbi_uid=11994&link_uid=15537665">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0060088">acts_upstream_of_or_within auditory receptor cell stereocilium organization</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-5-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-5-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/10978835,11124469,16887306,23217710" target="_blank" title="PubMed ID 10978835,11124469,16887306,23217710" ref="ordinalpos=1&ncbi_uid=11994&link_uid=10978835,11124469,16887306,23217710">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0007155">involved_in cell adhesion</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-6-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IBA</a>
|
||
<div id="evidence-code-6-1" class="ecode">Inferred from Biological aspect of Ancestor<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0050973">acts_upstream_of_or_within detection of mechanical stimulus involved in equilibrioception</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-7-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-7-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/16481439" target="_blank" title="PubMed ID 16481439" ref="ordinalpos=1&ncbi_uid=11994&link_uid=16481439">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0050910">acts_upstream_of_or_within detection of mechanical stimulus involved in sensory perception of sound</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-8-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-8-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/16481439" target="_blank" title="PubMed ID 16481439" ref="ordinalpos=1&ncbi_uid=11994&link_uid=16481439">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0050957">involved_in equilibrioception</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-9-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> ISO</a>
|
||
<div id="evidence-code-9-1" class="ecode">Inferred from Sequence Orthology<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0007156">involved_in homophilic cell adhesion via plasma membrane adhesion molecules</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-10-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IEA</a>
|
||
<div id="evidence-code-10-1" class="ecode">Inferred from Electronic Annotation<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0042491">acts_upstream_of_or_within inner ear auditory receptor cell differentiation</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-11-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-11-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/16481439" target="_blank" title="PubMed ID 16481439" ref="ordinalpos=1&ncbi_uid=11994&link_uid=16481439">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0048839">acts_upstream_of_or_within inner ear development</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-12-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-12-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/10978835,15811708" target="_blank" title="PubMed ID 10978835,15811708" ref="ordinalpos=1&ncbi_uid=11994&link_uid=10978835,15811708">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0060122">acts_upstream_of_or_within inner ear receptor cell stereocilium organization</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-13-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-13-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/18339676" target="_blank" title="PubMed ID 18339676" ref="ordinalpos=1&ncbi_uid=11994&link_uid=18339676">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0007626">acts_upstream_of_or_within locomotory behavior</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-14-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-14-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/10430593,10978835,15811708,16962269" target="_blank" title="PubMed ID 10430593,10978835,15811708,16962269" ref="ordinalpos=1&ncbi_uid=11994&link_uid=10430593,10978835,15811708,16962269">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0002009">acts_upstream_of_or_within morphogenesis of an epithelium</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-15-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-15-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/11138007" target="_blank" title="PubMed ID 11138007" ref="ordinalpos=1&ncbi_uid=11994&link_uid=11138007">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0035264">acts_upstream_of_or_within multicellular organism growth</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-16-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-16-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/10978835" target="_blank" title="PubMed ID 10978835" ref="ordinalpos=1&ncbi_uid=11994&link_uid=10978835">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:1905515">acts_upstream_of_or_within non-motile cilium assembly</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-17-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-17-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/16481439" target="_blank" title="PubMed ID 16481439" ref="ordinalpos=1&ncbi_uid=11994&link_uid=16481439">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0045494">involved_in photoreceptor cell maintenance</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-18-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> ISO</a>
|
||
<div id="evidence-code-18-1" class="ecode">Inferred from Sequence Orthology<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0051592">involved_in response to calcium ion</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-19-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IEA</a>
|
||
<div id="evidence-code-19-1" class="ecode">Inferred from Electronic Annotation<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0051592">involved_in response to calcium ion</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-20-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> ISO</a>
|
||
<div id="evidence-code-20-1" class="ecode">Inferred from Sequence Orthology<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0060013">acts_upstream_of_or_within righting reflex</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-21-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-21-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/10978835,15811708" target="_blank" title="PubMed ID 10978835,15811708" ref="ordinalpos=1&ncbi_uid=11994&link_uid=10978835,15811708">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0050953">involved_in sensory perception of light stimulus</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-22-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> ISO</a>
|
||
<div id="evidence-code-22-1" class="ecode">Inferred from Sequence Orthology<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0007605">acts_upstream_of_or_within sensory perception of sound</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-23-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IGI</a>
|
||
<div id="evidence-code-23-1" class="ecode">Inferred from Genetic Interaction<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/15537665" target="_blank" title="PubMed ID 15537665" ref="ordinalpos=1&ncbi_uid=11994&link_uid=15537665">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0007605">acts_upstream_of_or_within sensory perception of sound</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-24-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-24-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/5093631,9653653,10430593,10978835,11124469,14570705,16481439" target="_blank" title="PubMed ID 5093631,9653653,10430593,10978835,11124469,14570705,16481439" ref="ordinalpos=1&ncbi_uid=11994&link_uid=5093631,9653653,10430593,10978835,11124469,14570705,16481439">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0007605">acts_upstream_of_or_within sensory perception of sound</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-25-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> ISO</a>
|
||
<div id="evidence-code-25-1" class="ecode">Inferred from Sequence Orthology<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0007605">involved_in sensory perception of sound</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-26-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> ISO</a>
|
||
<div id="evidence-code-26-1" class="ecode">Inferred from Sequence Orthology<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0001964">acts_upstream_of_or_within startle response</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-27-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-27-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/15811708" target="_blank" title="PubMed ID 15811708" ref="ordinalpos=1&ncbi_uid=11994&link_uid=15811708">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0007601">acts_upstream_of_or_within visual perception</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-28-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IMP</a>
|
||
<div id="evidence-code-28-1" class="ecode">Inferred from Mutant Phenotype<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/16799054" target="_blank" title="PubMed ID 16799054" ref="ordinalpos=1&ncbi_uid=11994&link_uid=16799054">PubMed</a> </td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
</div>
|
||
<div class="ui-ncbigrid-outer-div">
|
||
<div class="ui-ncbigrid-inner-div">
|
||
<table class="jig-ncbigrid" data-config="isPageable: true, pageSize : 25, isSortable: true, columnTypes: ['str', 'str', 'str']">
|
||
<thead>
|
||
<tr>
|
||
<th class="col1">Component</th>
|
||
<th style="width:12%;">Evidence Code</th>
|
||
<th style="width:10%;">Pubs</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0005737">located_in cytoplasm</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-1-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IDA</a>
|
||
<div id="evidence-code-1-2" class="ecode">Inferred from Direct Assay<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"><a href="/pubmed/16481439" target="_blank" title="PubMed ID 16481439" ref="ordinalpos=1&ncbi_uid=11994&link_uid=16481439">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0005576">located_in extracellular region</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-2-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IEA</a>
|
||
<div id="evidence-code-2-2" class="ecode">Inferred from Electronic Annotation<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0005615">located_in extracellular space</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-3-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> ISO</a>
|
||
<div id="evidence-code-3-2" class="ecode">Inferred from Sequence Orthology<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0016020">located_in membrane</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-4-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> ISS</a>
|
||
<div id="evidence-code-4-2" class="ecode">Inferred from Sequence or Structural Similarity<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"><a href="/pubmed/11138007" target="_blank" title="PubMed ID 11138007" ref="ordinalpos=1&ncbi_uid=11994&link_uid=11138007">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0001750">located_in photoreceptor outer segment</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-5-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IDA</a>
|
||
<div id="evidence-code-5-2" class="ecode">Inferred from Direct Assay<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"><a href="/pubmed/14570705" target="_blank" title="PubMed ID 14570705" ref="ordinalpos=1&ncbi_uid=11994&link_uid=14570705">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0001750">located_in photoreceptor outer segment</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-6-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> ISO</a>
|
||
<div id="evidence-code-6-2" class="ecode">Inferred from Sequence Orthology<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0005886">is_active_in plasma membrane</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-7-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IBA</a>
|
||
<div id="evidence-code-7-2" class="ecode">Inferred from Biological aspect of Ancestor<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0005886">located_in plasma membrane</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-8-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IDA</a>
|
||
<div id="evidence-code-8-2" class="ecode">Inferred from Direct Assay<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"><a href="/pubmed/23217710" target="_blank" title="PubMed ID 23217710" ref="ordinalpos=1&ncbi_uid=11994&link_uid=23217710">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0005886">located_in plasma membrane</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-9-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> TAS</a>
|
||
<div id="evidence-code-9-2" class="ecode">Traceable Author Statement<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0032420">is_active_in stereocilium</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-10-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> EXP</a>
|
||
<div id="evidence-code-10-2" class="ecode">Inferred from Experiment<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"><a href="/pubmed/26754646" target="_blank" title="PubMed ID 26754646" ref="ordinalpos=1&ncbi_uid=11994&link_uid=26754646">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0032420">located_in stereocilium</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-11-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IDA</a>
|
||
<div id="evidence-code-11-2" class="ecode">Inferred from Direct Assay<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"><a href="/pubmed/14570705" target="_blank" title="PubMed ID 14570705" ref="ordinalpos=1&ncbi_uid=11994&link_uid=14570705">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0045202">located_in synapse</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-12-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> ISO</a>
|
||
<div id="evidence-code-12-2" class="ecode">Inferred from Sequence Orthology<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"> </td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
</div>
|
||
</div>
|
||
|
||
<div class="rprt-section gene-general-protein-info">
|
||
<section class="rprt-section-header" id="general-protein-info">
|
||
<h2 id="header-general-protein-info">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-general-protein-info .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">General protein information</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.General_Protein_Information" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<dl>
|
||
<dt>Preferred Names</dt>
|
||
<dd>protocadherin-15</dd>
|
||
</dl>
|
||
<dl>
|
||
<dt>Names</dt>
|
||
<dd>Ames waltzer</dd>
|
||
<dd>protocadherin 15 CD2</dd>
|
||
</dl>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="rprt-section gene-reference-sequences">
|
||
<section class="rprt-section-header" id="reference-sequences">
|
||
<h2 id="header-reference-sequences">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-reference-sequences .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">NCBI Reference Sequences (RefSeq)</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.NCBI_Reference_Sequences_RefS" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<p>
|
||
<span class="new-icon">NEW</span>
|
||
<strong>Try the new <a href="/datasets/tables/genes/?table_type=transcripts&ids=11994&utm_source=gene&utm_medium=referral&utm_campaign=refseq" title="View selected attributes for an input list of genes and download datasets containing genomic, transcript and protein sequences along with a detailed data report." data-ga-category="refseq" data-ga-action="click_datasets_link" data-ga-label="transcript_table">Transcript table</a></strong>
|
||
</p>
|
||
<h3 class="genomerefseqs gene_std_toggler" id="refseqset-independent">
|
||
<a class="jig-ncbitoggler-open">RefSeqs maintained independently of Annotated
|
||
Genomes</a>
|
||
</h3>
|
||
<div class="genomerefseqs_slave">
|
||
<p class="desc"> These reference sequences exist independently of genome builds. <a href="#refseq-expl" id="expl-refseg">Explain</a></p>
|
||
<p id="refseq-expl"> These reference sequences are curated independently of the genome
|
||
annotation cycle, so their versions may not match the RefSeq versions in the current
|
||
genome build. Identify version mismatches by comparing the version of the RefSeq in
|
||
this section to the one reported in <a href="#geneGenomic regions, transcripts, and products">Genomic regions,
|
||
transcripts, and products</a> above. </p>
|
||
<h4 id="mrnaandproteins-p119068368">mRNA and Protein(s) </h4>
|
||
<ol>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001142735.1">NM_001142735.1</a> → <a href="/protein/NP_001136207.1">NP_001136207.1</a> protocadherin-15 isoform CD1-2 precursor</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (B) lacks an alternate in-frame exon in the 5' coding region, compared to variant A. The resulting isoform (CD1-2), also known as protocadherin-15-CD1 isoform 2, lacks a 5-aa segment near the N-terminus, compared to isoform CD1-1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AC153858, AK139154, CJ166718, DQ354396">AC153858, AK139154, CJ166718, DQ354396</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS56715.1">CCDS56715.1</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000101064.4" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000101064.4</a>, <a href="http://www.ensembl.org/id/ENSMUST00000105424.10" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000105424.10</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001136207.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">722</span> → <span class="cddto">815</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001142736.1">NM_001142736.1</a> → <a href="/protein/NP_001136208.1">NP_001136208.1</a> protocadherin-15 isoform CD1-4 precursor</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (C) lacks two alternate in-frame exons in the 5' and 3' coding region, compared to variant A. The resulting isoform (CD1-4), also known as protocadherin-15-CD1 isoform 4, lacks a 5-aa segment near the N-terminus and a 2-aa segment near the C-terminus, compared to isoform CD1-1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AC153858, AK139154, CJ166718, DQ354398">AC153858, AK139154, CJ166718, DQ354398</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS56718.1">CCDS56718.1</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000122911.3" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000122911.3</a>, <a href="http://www.ensembl.org/id/ENSMUST00000131321.9" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000131321.9</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001136208.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">722</span> → <span class="cddto">815</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001142737.1">NM_001142737.1</a> → <a href="/protein/NP_001136209.1">NP_001136209.1</a> protocadherin-15 isoform CD1-6 precursor</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (D) lacks an alternate in-frame exon in the 5' coding region and two alternate in-frame exons in the central coding region, compared to variant A. The resulting isoform (CD1-6), also known as protocadherin-15-CD1 isoform 6, lacks a 5-aa segment near the N-terminus and a 71-aa segment in the central protein, compared to isoform CD1-1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AC153858, AK139154, CJ166718, DQ354400">AC153858, AK139154, CJ166718, DQ354400</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS56719.1">CCDS56719.1</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000101069.4" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000101069.4</a>, <a href="http://www.ensembl.org/id/ENSMUST00000105429.10" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000105429.10</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001136209.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">651</span> → <span class="cddto">744</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001142738.1">NM_001142738.1</a> → <a href="/protein/NP_001136210.1">NP_001136210.1</a> protocadherin-15 isoform CD1-8 precursor</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (F) lacks 4 alternate in-frame exons, compared to variant A. The resulting isoform (CD1-8), also known as protocadherin-15-CD1 isoform 8, has the same N- and C-termini but lacks four internal segments, compared to isoform CD1-1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AC153858, AK139154, CJ166718, DQ354401">AC153858, AK139154, CJ166718, DQ354401</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS48595.1">CCDS48595.1</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000122940.3" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000122940.3</a>, <a href="http://www.ensembl.org/id/ENSMUST00000147189.9" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000147189.9</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001136210.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">685</span> → <span class="cddto">778</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001142739.1">NM_001142739.1</a> → <a href="/protein/NP_001136211.1">NP_001136211.1</a> protocadherin-15 isoform CD1-9 precursor</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (G) lacks two alternate in-frame exons in the 5' coding region, compared to variant A. The resulting isoform (CD1-9), also known as protocadherin-15-CD1 isoform 9, lacks a 27-aa segment near the N-terminus, compared to isoform CD1-1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AC153858, AK139154, CJ166718, DQ354402">AC153858, AK139154, CJ166718, DQ354402</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS56720.1">CCDS56720.1</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000121939.3" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000121939.3</a>, <a href="http://www.ensembl.org/id/ENSMUST00000126920.9" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000126920.9</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001136211.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">700</span> → <span class="cddto">793</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001142740.1">NM_001142740.1</a> → <a href="/protein/NP_001136212.1">NP_001136212.1</a> protocadherin-15 isoform CD1-7 precursor</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (E) lacks three alternate in-frame exons, compared to variant A. The resulting isoform (CD1-7), also known as protocadherin-15-CD1 isoform 7, has the same N- and C-termini but lacks three internal segments, compared to isoform CD1-1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AC153858, AK139154, CJ166718, DQ354403">AC153858, AK139154, CJ166718, DQ354403</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS48594.1">CCDS48594.1</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000090076.7" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000090076.7</a>, <a href="http://www.ensembl.org/id/ENSMUST00000092420.13" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000092420.13</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001136212.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">722</span> → <span class="cddto">815</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001142741.1">NM_001142741.1</a> → <a href="/protein/NP_001136213.1">NP_001136213.1</a> protocadherin-15 isoform CD1-10 precursor</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (H) lacks three alternate in-frame exons, compared to variant A. The resulting isoform (CD1-10), also known as protocadherin-15-CD1 isoform 10, has the same N- and C-termini but lacks two internal segments, compared to isoform CD1-10.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AC153858, AK139154, CJ166718, DQ354404">AC153858, AK139154, CJ166718, DQ354404</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS56721.1">CCDS56721.1</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000117731.3" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000117731.3</a>, <a href="http://www.ensembl.org/id/ENSMUST00000129404.9" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000129404.9</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001136213.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">700</span> → <span class="cddto">793</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001142742.1">NM_001142742.1</a> → <a href="/protein/NP_001136214.1">NP_001136214.1</a> protocadherin-15 isoform CD2-1 precursor</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (I) includes an alternate in-frame exon in the central coding region and has a distinct 3' splice pattern, compared to variant A. The resulting isoform (CD2-1), also known as protocadherin-15-CD2 isoform 1, includes an alternate 7-aa segment in the central coding region and has a distinct and longer C-terminus, compared to isoform CD1-1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AK139154, CJ166718, DQ354405">AK139154, CJ166718, DQ354405</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS56711.1">CCDS56711.1</a>
|
||
</dd>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A0A6YY17" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">A0A0A6YY17</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000119662.3" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000119662.3</a>, <a href="http://www.ensembl.org/id/ENSMUST00000151116.9" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000151116.9</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001136214.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">734</span> → <span class="cddto">827</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001142743.1">NM_001142743.1</a> → <a href="/protein/NP_001136215.1">NP_001136215.1</a> protocadherin-15 isoform CD2-2 precursor</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (J) lacks an alternate in-frame exon in the 5' coding region and has a distinct 3' splice pattern, compared to variant A. The resulting isoform (CD2-2), also known as protocadherin-15-CD2 isoform 2, lacks a 5-aa segment in the 5' coding region and has a distinct and longer C-terminus, compared to isoform CD1-1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AK139154, CJ166718, DQ354406">AK139154, CJ166718, DQ354406</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS56716.1">CCDS56716.1</a>
|
||
</dd>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A140T8S2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">A0A140T8S2</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000122466.3" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000122466.3</a>, <a href="http://www.ensembl.org/id/ENSMUST00000131724.9" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000131724.9</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001136215.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">722</span> → <span class="cddto">815</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001142746.1">NM_001142746.1</a> → <a href="/protein/NP_001136218.1">NP_001136218.1</a> protocadherin-15 isoform CD3-1 precursor</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (K) has a distinct 3' splice pattern, compared to variant A. The resulting isoform (CD3-1), also known as protocadherin-15-CD3 isoform 1, has a distinct and longer C-terminus, compared to isoform CD1-1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AC153858, AK139154, CJ166718, CO433511, DQ354413">AC153858, AK139154, CJ166718, CO433511, DQ354413</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS56713.1">CCDS56713.1</a>
|
||
</dd>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A140T8S2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">A0A140T8S2</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000135501.2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000135501.2</a>, <a href="http://www.ensembl.org/id/ENSMUST00000177107.8" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000177107.8</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001136218.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">727</span> → <span class="cddto">820</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001142747.1">NM_001142747.1</a> → <a href="/protein/NP_001136219.1">NP_001136219.1</a> protocadherin-15 isoform SI-1 precursor</p>
|
||
<p>
|
||
<a href="/ipg/NP_001136219.1/" ref="ncbi_uid=11994">See identical proteins and their annotated locations for NP_001136219.1</a>
|
||
</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (M) has a distinct 3' splice pattern, compared to variant A. The resulting isoform (SI-1), also known as protocadherin-15-secreted isoform 1, has a substantially shorter and distinct C-terminus, compared to isoform CD1-1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AK139154, CJ166718">AK139154, CJ166718</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS56712.1">CCDS56712.1</a>
|
||
</dd>
|
||
<dt>UniProtKB/Swiss-Prot</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/Q99PJ1" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q99PJ1</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000135849.2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000135849.2</a>, <a href="http://www.ensembl.org/id/ENSMUST00000177420.7" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000177420.7</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001136219.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">727</span> → <span class="cddto">820</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001142748.1">NM_001142748.1</a> → <a href="/protein/NP_001136220.1">NP_001136220.1</a> protocadherin-15 isoform SI-2 precursor</p>
|
||
<p>
|
||
<a href="/ipg/NP_001136220.1/" ref="ncbi_uid=11994">See identical proteins and their annotated locations for NP_001136220.1</a>
|
||
</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (N) lacks an alternate in-frame exon in the 5' coding region and has a distinct 3' splice pattern, compared to variant A. The resulting isoform (SI-2), also known as protocadherin-15-secreted isoform 2, lacks a 5-aa segment near the N-terminus and has a substantially shorter and distinct C-terminus, compared to isoform CD1-1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/CJ166718, DQ354417">CJ166718, DQ354417</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS56714.1">CCDS56714.1</a>
|
||
</dd>
|
||
<dt>UniProtKB/Swiss-Prot</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/Q99PJ1" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q99PJ1</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000120056.3" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000120056.3</a>, <a href="http://www.ensembl.org/id/ENSMUST00000125006.9" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000125006.9</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001136220.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">722</span> → <span class="cddto">815</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001142760.1">NM_001142760.1</a> → <a href="/protein/NP_001136232.1">NP_001136232.1</a> protocadherin-15 isoform CD3-2 precursor</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (L) lacks an alternate in-frame exon in the 5' coding region and has a distinct 3' splice pattern, compared to variant A. The resulting isoform (CD3-2), also known as protocadherin-15-CD3 isoform 2, lacks a 5-aa segment near the N-terminus and has a distinct and longer C-terminus, compared to isoform CD1-1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AC153858, AK139154, CJ166718, CO433511, DQ354414">AC153858, AK139154, CJ166718, CO433511, DQ354414</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS56717.1">CCDS56717.1</a>
|
||
</dd>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A140T8S2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">A0A140T8S2</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000141973.2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000141973.2</a>, <a href="http://www.ensembl.org/id/ENSMUST00000191854.6" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000191854.6</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001136232.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">722</span> → <span class="cddto">815</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_023115.3">NM_023115.3</a> → <a href="/protein/NP_075604.2">NP_075604.2</a> protocadherin-15 isoform CD1-1 precursor</p>
|
||
<p>
|
||
<a href="/ipg/NP_075604.2/" ref="ncbi_uid=11994">See identical proteins and their annotated locations for NP_075604.2</a>
|
||
</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (A) encodes isoform CD1-1, also known as protocadherin-15-CD1 isoform 1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AC121142, AC153858, AF281899, CJ166718">AC121142, AC153858, AF281899, CJ166718</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS35934.1">CCDS35934.1</a>
|
||
</dd>
|
||
<dt>UniProtKB/Swiss-Prot</dt>
|
||
<dd><a href="https://www.uniprot.org/uniprot/D6RCH0" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">D6RCH0</a>, <a href="https://www.uniprot.org/uniprot/E9Q7D7" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">E9Q7D7</a>, <a href="https://www.uniprot.org/uniprot/E9Q7R1" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">E9Q7R1</a>, <a href="https://www.uniprot.org/uniprot/E9Q7R2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">E9Q7R2</a>, <a href="https://www.uniprot.org/uniprot/F6KJX4" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F6KJX4</a>, <a href="https://www.uniprot.org/uniprot/F6KKG6" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F6KKG6</a>, <a href="https://www.uniprot.org/uniprot/F6R5Z7" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F6R5Z7</a>, <a href="https://www.uniprot.org/uniprot/F6RBV2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F6RBV2</a>, <a href="https://www.uniprot.org/uniprot/F6U3Q6" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F6U3Q6</a>, <a href="https://www.uniprot.org/uniprot/F6UPC9" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F6UPC9</a>, <a href="https://www.uniprot.org/uniprot/F6VPR3" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F6VPR3</a>, <a href="https://www.uniprot.org/uniprot/F6WUN7" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F6WUN7</a>, <a href="https://www.uniprot.org/uniprot/F6X715" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F6X715</a>, <a href="https://www.uniprot.org/uniprot/F6XPA1" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F6XPA1</a>, <a href="https://www.uniprot.org/uniprot/F6Y0A5" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F6Y0A5</a>, <a href="https://www.uniprot.org/uniprot/F6YP25" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F6YP25</a>, <a href="https://www.uniprot.org/uniprot/F6YZQ9" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F6YZQ9</a>, <a href="https://www.uniprot.org/uniprot/F7ASH0" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F7ASH0</a>, <a href="https://www.uniprot.org/uniprot/F7CIN1" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F7CIN1</a>, <a href="https://www.uniprot.org/uniprot/F7D5J8" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F7D5J8</a>, <a href="https://www.uniprot.org/uniprot/F7DFU0" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F7DFU0</a>, <a href="https://www.uniprot.org/uniprot/F8VQ61" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">F8VQ61</a>, <a href="https://www.uniprot.org/uniprot/H3BKS0" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">H3BKS0</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM15" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM15</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM16" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM16</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM18" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM18</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM19" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM19</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM20" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM20</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM21" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM21</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM22" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM22</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM23" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM23</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM24" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM24</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM25" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM25</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM26" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM26</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM27" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM27</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM28" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM28</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM29" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM29</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM30" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM30</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM31" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM31</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM32" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM32</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM33" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM33</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM34" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM34</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM35" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM35</a>, <a href="https://www.uniprot.org/uniprot/Q0ZM37" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q0ZM37</a>, <a href="https://www.uniprot.org/uniprot/Q2VQG7" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q2VQG7</a>, <a href="https://www.uniprot.org/uniprot/Q3URZ1" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q3URZ1</a>, <a href="https://www.uniprot.org/uniprot/Q3UTS7" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q3UTS7</a>, <a href="https://www.uniprot.org/uniprot/Q99PJ1" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">Q99PJ1</a></dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000141792.2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000141792.2</a>, <a href="http://www.ensembl.org/id/ENSMUST00000193361.6" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000193361.6</a></dd>
|
||
<dt class="clear"> Conserved Domains (1) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_075604.2">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">727</span> → <span class="cddto">820</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
</ol>
|
||
</div>
|
||
<h3 class="genomerefseqs gene_std_toggler" id="annotatedrefseq-title">
|
||
<a class="jig-ncbitoggler-open">RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02</a>
|
||
</h3>
|
||
<div class="genomerefseqs_slave">
|
||
<p class="desc"> The following sections contain reference sequences that belong to a
|
||
specific genome build. <a href="#" id="expl-genomes">Explain</a></p>
|
||
<p id="expl-genomes-desc" style="display:none">This section includes genomic Reference
|
||
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
|
||
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
|
||
assemblies. Model RNAs and proteins are also reported here.</p>
|
||
<h3 id="refseq-sequencedescription-p48377120">Reference GRCm39 C57BL/6J</h3>
|
||
<h4 id="genomic-p48377120">Genomic </h4>
|
||
<ol>
|
||
<li>
|
||
<p>NC_000076.7 Reference GRCm39 C57BL/6J</p>
|
||
<dl>
|
||
<dt>Range</dt>
|
||
<dd class="rs-range">
|
||
<span>72932003..74485663</span>
|
||
</dd>
|
||
<dt>Download</dt>
|
||
<dd><a href="/nuccore/NC_000076.7?from=72932003&to=74485663&report=genbank" ref="ordinalpos=1&ncbi_uid=11994&link_uid=NC_000076.7?from=72932003&to=74485663&report=genbank">GenBank</a>, <a href="/nuccore/NC_000076.7?from=72932003&to=74485663&report=fasta" ref="ordinalpos=1&ncbi_uid=11994&link_uid=NC_000076.7?from=72932003&to=74485663&report=fasta">FASTA</a>, <a href="/nuccore/NC_000076.7?from=72698953&to=74718711&report=graph&content=5" ref="ordinalpos=1&ncbi_uid=11994&link_uid=NC_000076.7?from=72698953&to=74718711&report=graph&content=5">Sequence Viewer (Graphics)</a></dd>
|
||
</dl>
|
||
</li>
|
||
</ol>
|
||
<h4 id="mrnaandproteins-p45989408">mRNA and Protein(s) </h4>
|
||
<ol>
|
||
<li>
|
||
<p><a href="/nuccore/XM_017313785.3">XM_017313785.3</a> → <a href="/protein/XP_017169274.1">XP_017169274.1</a> protocadherin-15 isoform X7</p>
|
||
<dl>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A0A6YY17" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">A0A0A6YY17</a>
|
||
</dd>
|
||
<dt class="clear"> Conserved Domains (2) <a href="/Structure/cdd/wrpsb.cgi?seqinput=XP_017169274.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">727</span> → <span class="cddto">820</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=375858">pfam18432</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">36</span> → <span class="cddto">145</span></dt>
|
||
<dd class="clearfix"> ECD; Extracellular Cadherin domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XM_017313784.3">XM_017313784.3</a> → <a href="/protein/XP_017169273.1">XP_017169273.1</a> protocadherin-15 isoform X1</p>
|
||
<dl>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A0A6YXB5" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">A0A0A6YXB5</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000141920.2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000141920.2</a>, <a href="http://www.ensembl.org/id/ENSMUST00000195531.6" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000195531.6</a></dd>
|
||
<dt class="clear"> Conserved Domains (2) <a href="/Structure/cdd/wrpsb.cgi?seqinput=XP_017169273.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">727</span> → <span class="cddto">820</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=375858">pfam18432</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">36</span> → <span class="cddto">145</span></dt>
|
||
<dd class="clearfix"> ECD; Extracellular Cadherin domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XM_006513155.5">XM_006513155.5</a> → <a href="/protein/XP_006513218.1">XP_006513218.1</a> protocadherin-15 isoform X2</p>
|
||
<dl>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A140T8S2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">A0A140T8S2</a>
|
||
</dd>
|
||
<dt class="clear"> Conserved Domains (2) <a href="/Structure/cdd/wrpsb.cgi?seqinput=XP_006513218.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">727</span> → <span class="cddto">820</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=375858">pfam18432</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">36</span> → <span class="cddto">145</span></dt>
|
||
<dd class="clearfix"> ECD; Extracellular Cadherin domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XM_006513156.5">XM_006513156.5</a> → <a href="/protein/XP_006513219.1">XP_006513219.1</a> protocadherin-15 isoform X3</p>
|
||
<dl>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A140T8S2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">A0A140T8S2</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000142173.2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUSP00000142173.2</a>, <a href="http://www.ensembl.org/id/ENSMUST00000193739.6" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">ENSMUST00000193739.6</a></dd>
|
||
<dt class="clear"> Conserved Domains (2) <a href="/Structure/cdd/wrpsb.cgi?seqinput=XP_006513219.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">727</span> → <span class="cddto">820</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=375858">pfam18432</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">36</span> → <span class="cddto">145</span></dt>
|
||
<dd class="clearfix"> ECD; Extracellular Cadherin domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XM_036155565.1">XM_036155565.1</a> → <a href="/protein/XP_036011458.1">XP_036011458.1</a> protocadherin-15 isoform X5</p>
|
||
<dl>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A0A6YXB5" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">A0A0A6YXB5</a>
|
||
</dd>
|
||
<dt class="clear"> Conserved Domains (3) <a href="/Structure/cdd/wrpsb.cgi?seqinput=XP_036011458.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">727</span> → <span class="cddto">820</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=214520">smart00112</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">310</span> → <span class="cddto">398</span></dt>
|
||
<dd class="clearfix"> CA; Cadherin repeats</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=408229">pfam18432</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">36</span> → <span class="cddto">145</span></dt>
|
||
<dd class="clearfix"> ECD; Extracellular Cadherin domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XM_036155566.1">XM_036155566.1</a> → <a href="/protein/XP_036011459.1">XP_036011459.1</a> protocadherin-15 isoform X6</p>
|
||
<dl>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A140T8S2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">A0A140T8S2</a>
|
||
</dd>
|
||
<dt class="clear"> Conserved Domains (3) <a href="/Structure/cdd/wrpsb.cgi?seqinput=XP_036011459.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">722</span> → <span class="cddto">815</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=214520">smart00112</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">305</span> → <span class="cddto">393</span></dt>
|
||
<dd class="clearfix"> CA; Cadherin repeats</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=408229">pfam18432</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">31</span> → <span class="cddto">140</span></dt>
|
||
<dd class="clearfix"> ECD; Extracellular Cadherin domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XM_036155564.1">XM_036155564.1</a> → <a href="/protein/XP_036011457.1">XP_036011457.1</a> protocadherin-15 isoform X4</p>
|
||
<dl>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A140T8S2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">A0A140T8S2</a>
|
||
</dd>
|
||
<dt class="clear"> Conserved Domains (3) <a href="/Structure/cdd/wrpsb.cgi?seqinput=XP_036011457.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">722</span> → <span class="cddto">815</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=214520">smart00112</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">305</span> → <span class="cddto">393</span></dt>
|
||
<dd class="clearfix"> CA; Cadherin repeats</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=408229">pfam18432</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">31</span> → <span class="cddto">140</span></dt>
|
||
<dd class="clearfix"> ECD; Extracellular Cadherin domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XM_036155563.1">XM_036155563.1</a> → <a href="/protein/XP_036011456.1">XP_036011456.1</a> protocadherin-15 isoform X4</p>
|
||
<dl>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A140T8S2" ref="itool=Gene_FullReport&PrId=5380&uid=11994&nlmid=&db=gene">A0A140T8S2</a>
|
||
</dd>
|
||
<dt class="clear"> Conserved Domains (3) <a href="/Structure/cdd/wrpsb.cgi?seqinput=XP_036011456.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=206637">cd11304</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">722</span> → <span class="cddto">815</span></dt>
|
||
<dd class="clearfix"> Cadherin_repeat; Cadherin tandem repeat domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=214520">smart00112</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">305</span> → <span class="cddto">393</span></dt>
|
||
<dd class="clearfix"> CA; Cadherin repeats</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=408229">pfam18432</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">31</span> → <span class="cddto">140</span></dt>
|
||
<dd class="clearfix"> ECD; Extracellular Cadherin domain</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
</ol>
|
||
<h4 id="rna-p32038608">RNA</h4>
|
||
<ol>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936069.1">XR_004936069.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936071.1">XR_004936071.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936081.1">XR_004936081.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936073.1">XR_004936073.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936072.1">XR_004936072.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936089.1">XR_004936089.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936068.1">XR_004936068.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_001779426.3">XR_001779426.3</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936076.1">XR_004936076.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936086.1">XR_004936086.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936077.1">XR_004936077.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936087.1">XR_004936087.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936078.1">XR_004936078.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936083.1">XR_004936083.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936080.1">XR_004936080.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936088.1">XR_004936088.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936093.1">XR_004936093.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936074.1">XR_004936074.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936092.1">XR_004936092.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936075.1">XR_004936075.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936070.1">XR_004936070.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936082.1">XR_004936082.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936091.1">XR_004936091.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936079.1">XR_004936079.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936084.1">XR_004936084.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936085.1">XR_004936085.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XR_004936090.1">XR_004936090.1</a> RNA Sequence </p>
|
||
<dl></dl>
|
||
</li>
|
||
</ol>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div class="rprt-section gene-related-sequences">
|
||
<section class="rprt-section-header" id="related-sequences">
|
||
<h2 id="header-related-sequences">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-related-sequences .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Related sequences</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.Related_Sequences" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<div>
|
||
<table id="proteinTblId" class="jig-ncbiservergrid" data-jigconfig="webservice:'/gene/11994/data/related-sequences/',webserviceParams: 'p$l=Ajax', isServersideLoad:true, isServersidePaging: true,isServersidePagingCached: true,pageSize:25">
|
||
<thead>
|
||
<tr>
|
||
<th colspan="2" id="rs-nucleo">Nucleotide</th>
|
||
<th rowspan="2" id="rs-protein">Protein</th>
|
||
<th class="nucleoTblTh" rowspan="2" id="rs-strain">Strain</th>
|
||
</tr>
|
||
<tr>
|
||
<th id="rs-heading">Heading</th>
|
||
<th id="rs-heading-acc">Accession and Version</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody></tbody>
|
||
</table>
|
||
<table id="proteinTblId" class="jig-ncbigrid" data-jigconfig="isPageable:true, pageSize:25">
|
||
<thead>
|
||
<tr>
|
||
<th class="proteinTblTh" rowspan="2" id="rs-prot-acc">Protein Accession</th>
|
||
<th class="proteinTblTh" colspan="2" id="rs-link">Links</th>
|
||
</tr>
|
||
<tr>
|
||
<th id="rs-genepept">GenPept Link</th>
|
||
<th id="rs-uniprot">UniProtKB Link</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
<tr>
|
||
<td headers="rs-prot-acc">Q99PJ1.3</td>
|
||
<td headers="rs-link rs-genepept">
|
||
<a href="/protein/519668673" ref="ordinalpos=1&ncbi_uid=11994&link_uid=519668673">GenPept</a>
|
||
</td>
|
||
<td>
|
||
<a href="https://www.uniprot.org/uniprot/Q99PJ1">UniProtKB/Swiss-Prot:Q99PJ1</a>
|
||
</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div class="rprt-section gene-additional-links">
|
||
|
||
<section class="rprt-section-header" id="additional-links"><h2 id="header-additional-links"><a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-additional-links .rprt-section-body'"><span class="ui-ncbitoggler-master-text">Additional links</span></a></h2><div class="rprt-section-tools"><a href="#top" title="Go to the top of the page" class="gene-top-page"><span>Go to the top of the page</span></a><a href="/books/NBK3841/#EntrezGene.Additional_Links" title="Help" class="gene-section-help"><span>Help</span></a></div></section>
|
||
|
||
<div class="rprt-section-body" style="">
|
||
|
||
|
||
<h3 class="withnote" id="genelinkout">
|
||
<a class="jig-ncbitoggler">Gene LinkOut</a>
|
||
</h3><div>
|
||
<p>The following <a href="https://www.ncbi.nlm.nih.gov/projects/linkout/index.html">LinkOut</a> resources are supplied by external providers. These providers are responsible for maintaining the links. </p>
|
||
<div>
|
||
<div class="linkout">
|
||
<a class="jig-ncbitoggler-open main">
|
||
<span>Other Literature Sources</span>
|
||
</a>
|
||
<ul>
|
||
<li><span class="free-rsc"></span>Dryad Digital Repository</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://datadryad.org/stash/dataset/doi:10.5061/dryad.j7h0c" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=7893">
|
||
<span>Dryad Digital Repository</span>
|
||
</a>
|
||
</li>
|
||
<li>
|
||
<a target="_blank" href="https://datadryad.org/stash/dataset/doi:10.5061/dryad.q3b16" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=7893">
|
||
<span>Dryad Digital Repository</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
</ul>
|
||
</div>
|
||
<div class="linkout">
|
||
<a class="jig-ncbitoggler-open main">
|
||
<span>Chemical Information</span>
|
||
</a>
|
||
<ul>
|
||
<li><span class="free-rsc"></span>Interologous Interaction Database</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://ophid.utoronto.ca/redirect/ncbi/mouse?proteins=11994" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=7911">
|
||
<span>Interologous Interaction Database</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="order-rsc"></span>MilliporeSigma</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.sigmaaldrich.com/catalog/genes/PCDH15?lang=en&region=US" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=9978">
|
||
<span>Pcdh15 products</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
</ul>
|
||
</div>
|
||
<div class="linkout">
|
||
<a class="jig-ncbitoggler-open main">
|
||
<span>Molecular Biology Databases</span>
|
||
</a>
|
||
<ul>
|
||
<li><span class="free-rsc"></span>Bgee database</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.bgee.org/gene/ENSMUSG00000052613" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=10418">
|
||
<span>Pcdh15 gene expression</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>BioGPS</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://biogps.org/gene/11994/" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=5059">
|
||
<span>BioGPS</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>BioGRID Open Repository of CRISPR Screens (ORCS)</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://orcs.thebiogrid.org/Gene/11994" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=10164">
|
||
<span>BioGRID CRISPR Screen Phenotypes (3 hits/81 screens)</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>CTD: Comparative Toxicogenomics Database</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://ctdbase.org/detail.go?type=gene&acc=65217" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=7845">
|
||
<span>CTD: Comparative Toxicogenomics Database - PCDH15</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>Eukaryotic Promoter Database</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://epd.vital-it.ch/cgi-bin/get_doc?db=mmEpdNew&format=genome&entry=Pcdh15_1" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=9624">
|
||
<span>Pcdh15_1</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>GlyGen glycoinformatics resource</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://glygen.org/protein/Q99PJ1" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=10227">
|
||
<span>GlyGen glycoinformatics resource</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li>Ingenuity Pathways Analysis</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://partnersolution.ingenuity.com/?cid=97ae3f91eab87a&p1=Entrez&p2=GV&s=&ipaUri=%2Fpa%2Fapi%2Fv2%2Fgeneview%3Fapplicationname%3DEntrez%26geneId%3D11994%26geneidtype%3Dentrezgene" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=5628">
|
||
<span>Ingenuity Pathways Analysis</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>InnateDB</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://www.innatedb.com/getGeneCard.do?id=162009" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=7894">
|
||
<span>InnateDB</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>Kyoto Encyclopedia of Genes and Genomes</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://www.genome.jp/dbget-bin/www_bget?mmu:11994" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=5174">
|
||
<span>Kyoto Encyclopedia of Genes and Genomes</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>OMA Browser: Orthologous MAtrix</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://omabrowser.org/oma/info/MOUSE02221/" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=9822">
|
||
<span>OMA Browser: Orthologous MAtrix</span>
|
||
</a>
|
||
</li>
|
||
<li>
|
||
<a target="_blank" href="https://omabrowser.org/oma/info/MOUSE02238/" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=9822">
|
||
<span>OMA Browser: Orthologous MAtrix</span>
|
||
</a>
|
||
</li>
|
||
<li>
|
||
<a target="_blank" href="https://omabrowser.org/oma/info/MOUSE02222/" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=9822">
|
||
<span>OMA Browser: Orthologous MAtrix</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>OrthoDB catalog of orthologs</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.orthodb.org/?ncbi=11994" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=8178">
|
||
<span>Orthologs</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>PhosphoSitePlus</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.phosphosite.org/entrezGeneIdAction.action?id=11994" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=7987">
|
||
<span>PhosphoSitePlus® - comprehensive post-translational modification resource</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
</ul>
|
||
</div>
|
||
<div class="linkout">
|
||
<a class="jig-ncbitoggler-open main">
|
||
<span>Research Materials</span>
|
||
</a>
|
||
<ul>
|
||
<li><span class="order-rsc"></span>Addgene Non-profit plasmid repository</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://addgene.org//browse/gene/11994" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=5304">
|
||
<span>Get Plasmids - Addgene</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li>ExactAntigen/Labome</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.labome.com/review/gene/mouse/Pcdh15-antibody.html" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=5753">
|
||
<span>reagent review</span>
|
||
</a>
|
||
</li>
|
||
<li>
|
||
<a target="_blank" href="https://www.labome.com/gene/mouse/Pcdh15-antibody.html" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=5753">
|
||
<span>reagents</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="order-rsc"></span>GenScript latest version of gene cDNA ORF Clone</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://www.genscript.com/gene/11994" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=8012">
|
||
<span>GenScript latest version of gene cDNA ORF Clone</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="order-rsc"></span>GeneCopoeia Inc.</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.genecopoeia.com/product/search/result.php?tax_id=10090&field=5&prt=16&key=11994" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=7255">
|
||
<span>Order miRNA target clones</span>
|
||
</a>
|
||
</li>
|
||
<li>
|
||
<a target="_blank" href="https://www.genecopoeia.com/product/search/result.php?prt=12&field=5&key=11994" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=7255">
|
||
<span>Order shRNA clones</span>
|
||
</a>
|
||
</li>
|
||
<li>
|
||
<a target="_blank" href="https://www.genecopoeia.com/product/search/result.php?tax_id=10090&prt=22&field=5&key=11994" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=7255">
|
||
<span>Order promoter clone</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="order-rsc"></span>OriGene</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.origene.com/search?q=PCDH15" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=7994">
|
||
<span>Order PCDH15 cDNA clone/Protein/Antibody/RNAi</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
</ul>
|
||
</div>
|
||
<div class="linkout">
|
||
<a class="jig-ncbitoggler-open main">
|
||
<span>Tools</span>
|
||
</a>
|
||
<ul>
|
||
<li><span class="free-rsc"></span>GeneMANIA</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://genemania.org/link?o=10090&g=11994" ref="itool=Gene_FullReport&uid=11994&nlmid=&db=gene&log$=linkoutlink&PrId=7529">
|
||
<span>GeneMANIA</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
<div id="urls-in-genombrowser" style="display:none">
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
<div><input type="hidden" class="section_status_input" name="status_checked" id="status_checked" value="" /><input type="hidden" class="section_status_input" name="status_open" id="status_open" value="summary,region,context,bibliography,phenotypes,variation,hiv,interactions,pathways,geneInfo,proteinInfo,refSeq,related,links" /><input type="hidden" class="section_status_input" name="status_exist" id="status_exist" value="summary,context,region,expression,bibliography,variation,interactions,geneInfo,proteinInfo,refSeq,related,links" /><input type="hidden" class="section_status_input" name="status_closed" id="status_closed" value="" /><meta name="status_checked" content="" class="meta_section_status" /><meta name="status_open" content="summary,region,context,bibliography,phenotypes,variation,hiv,interactions,pathways,geneInfo,proteinInfo,refSeq,related,links" class="meta_section_status" /><meta name="status_exist" content="summary,context,region,expression,bibliography,variation,interactions,geneInfo,proteinInfo,refSeq,related,links" class="meta_section_status" /><meta name="status_closed" content="" class="meta_section_status" /><script type="text/javascript">
|
||
|
||
var section_status_meta = {
|
||
'status_checked': '',
|
||
'status_open': 'summary,region,context,bibliography,phenotypes,variation,hiv,interactions,pathways,geneInfo,proteinInfo,refSeq,related,links',
|
||
'status_exist': 'summary,context,region,expression,bibliography,variation,interactions,geneInfo,proteinInfo,refSeq,related,links',
|
||
'status_closed': ''
|
||
};
|
||
|
||
|
||
/*
|
||
for (var o in section_status_meta) {
|
||
var meta=document.createElement('meta');
|
||
meta.name = o;
|
||
meta.content = section_status_meta[o];
|
||
var attr = document.createAttribute('data-ignore-limit');
|
||
attr.value = 'true';
|
||
meta.setAttributeNode(attr);
|
||
document.getElementsByTagName('head')[0].appendChild(meta);
|
||
}
|
||
*/
|
||
|
||
|
||
var __ncbi_sg_pingCallbacks_render_gene = function (data, evtObj, type) {
|
||
// data looks like {jsevent: "click", "link_id": "foo", ...}
|
||
// evtObj is the JS event object
|
||
// type is either "stat" (for applog) or "ga"
|
||
var extraData = {};
|
||
if (type == "stat") {
|
||
for (var o in section_status_meta) {
|
||
extraData[o] = section_status_meta[o];
|
||
}
|
||
|
||
return extraData;
|
||
|
||
}
|
||
}
|
||
|
||
|
||
</script></div>
|
||
|
||
</div>
|
||
</div>
|
||
|
||
<div id="messagearea_bottom">
|
||
|
||
</div>
|
||
<div class=" bottom">
|
||
|
||
</div>
|
||
|
||
</div>
|
||
</div>
|
||
<div class="supplemental col three_col last" id="sidebar_tabular">
|
||
<!-- sidebar close/hide button-->
|
||
<div class="ui-helper-clearfix">
|
||
<a href="#" id="sidecontent_2_pullout" style="float:right;" class="sidecontentpullout_local collapse_button"><span>Hide sidebar >></span></a>
|
||
</div>
|
||
<!-- end sidebar close/hide button-->
|
||
|
||
<h2 class="offscreen_noflow">Supplemental Content</h2>
|
||
|
||
<div id="gene-sidebar">
|
||
<div>
|
||
<div class="portlet brieflink dis-table-of-contents">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Table of contents</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_TableOfContents.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="Gene_TableOfContents" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_TableOfContents.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content">
|
||
<ul>
|
||
<li class="">
|
||
<a href="#summary">Summary</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#genomic-context">Genomic context</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#genomic-regions-transcripts-products">Genomic regions, transcripts, and products</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#gene-expression">Expression</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#bibliography">Bibliography</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#variation">Variation</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#interactions">Interactions</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#general-gene-info">General gene information</a>
|
||
<div class="subsection-links"><a href="#gene-markers">Markers</a>, <a href="#homology">Homology</a>, <a href="#gene-ontology">Gene Ontology</a></div>
|
||
</li>
|
||
<li class="">
|
||
<a href="#general-protein-info">General protein information</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#reference-sequences">NCBI Reference Sequences (RefSeq)</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#related-sequences">Related sequences</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#additional-links">Additional links</a>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="portlet brieflink dis-genomesbrowser brieflink dis-genomesbrowser">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Genome Browsers</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_GenomeBrowsers.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="Gene_GenomeBrowsers" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_GenomeBrowsers.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content">
|
||
<ul>
|
||
<li>
|
||
<a href="#">Loading...</a>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="portlet dis-related-info brieflink">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Related information</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_RelatedInformation.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="discovery_db_links" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_RelatedInformation.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content DiscoveryDbLinks">
|
||
<ul>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/structure?LinkName=gene_structure&from_uid=11994" ref="log$=recordlinks">3D structures</a>
|
||
<div class="brieflinkpop offscreen_noflow">3D structure of a gene</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pcassay?LinkName=gene_pcassay_alltarget_list&from_uid=11994" ref="log$=recordlinks">BioAssay by Target (List)</a>
|
||
<div class="brieflinkpop offscreen_noflow">BioAssays related to the gene by protein target or RNAi target</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pcassay?LinkName=gene_pcassay_target&from_uid=11994" ref="log$=recordlinks">BioAssay, by Gene target</a>
|
||
<div class="brieflinkpop offscreen_noflow">PubChem BioAssays done on the Gene target</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pcassay?LinkName=gene_pcassay_rnai&from_uid=11994" ref="log$=recordlinks">BioAssays, RNAi Target, Tested</a>
|
||
<div class="brieflinkpop offscreen_noflow">BioAssays that contain the gene as the target of a RNAi reagent</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/bioproject?LinkName=gene_bioproject&from_uid=11994" ref="log$=recordlinks">BioProjects</a>
|
||
<div class="brieflinkpop offscreen_noflow">BioProjects related to a gene</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/CCDS/CcdsBrowse.cgi?REQUEST=GENEID&DATA=11994" ref="log$=recordlinks">CCDS</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to CCDS</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/cdd?LinkName=gene_cdd&from_uid=11994" ref="log$=recordlinks">Conserved Domains</a>
|
||
<div class="brieflinkpop offscreen_noflow">Related CDD</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pmc?LinkName=gene_pmc&from_uid=11994" ref="log$=recordlinks">Full text in PMC</a>
|
||
<div class="brieflinkpop offscreen_noflow">PMC links</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pmc?LinkName=gene_pmc_nucleotide&from_uid=11994" ref="log$=recordlinks">Full text in PMC_nucleotide</a>
|
||
<div class="brieflinkpop offscreen_noflow">Full text in PubMedCentral identified from shared sequence links</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/sparcle?LinkName=gene_sparcle&from_uid=11994" ref="log$=recordlinks">Functional Class</a>
|
||
<div class="brieflinkpop offscreen_noflow">Functional class of the sequence domain architecture</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/gene?LinkName=gene_gene_neighbors&from_uid=11994" ref="log$=recordlinks">Gene neighbors</a>
|
||
<div class="brieflinkpop offscreen_noflow">Overlapping genes and two nearest non-overlapping genes on either side</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/genome?LinkName=gene_genome&from_uid=11994" ref="log$=recordlinks">Genome</a>
|
||
<div class="brieflinkpop offscreen_noflow">Related Genome</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/geoprofiles?LinkName=gene_geoprofiles&from_uid=11994" ref="log$=recordlinks">GEO Profiles</a>
|
||
<div class="brieflinkpop offscreen_noflow">Related GEO</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/homologene?LinkName=gene_homologene&from_uid=11994" ref="log$=recordlinks">HomoloGene</a>
|
||
<div class="brieflinkpop offscreen_noflow">Related HomoloGene</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/nuccore?LinkName=gene_nuccore&from_uid=11994" ref="log$=recordlinks">Nucleotide</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to related Nucleotide entry</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/probe?LinkName=gene_probe&from_uid=11994" ref="log$=recordlinks">Probe</a>
|
||
<div class="brieflinkpop offscreen_noflow">Related Probe entry</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/protein?LinkName=gene_protein&from_uid=11994" ref="log$=recordlinks">Protein</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to related protein entry</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pccompound?LinkName=gene_pccompound&from_uid=11994" ref="log$=recordlinks">PubChem Compound</a>
|
||
<div class="brieflinkpop offscreen_noflow">PubChem Compounds</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pcsubstance?LinkName=gene_pcsubstance&from_uid=11994" ref="log$=recordlinks">PubChem Substance</a>
|
||
<div class="brieflinkpop offscreen_noflow">PubChem Substances</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pubmed?LinkName=gene_pubmed&from_uid=11994" ref="log$=recordlinks">PubMed</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to related PubMed entry</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pubmed?LinkName=gene_pubmed_rif&from_uid=11994" ref="log$=recordlinks">PubMed (GeneRIF)</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to related PubMed article from GeneRIFs</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pubmed?LinkName=gene_pubmed_pmc_nucleotide&from_uid=11994" ref="log$=recordlinks">PubMed(nucleotide/PMC)</a>
|
||
<div class="brieflinkpop offscreen_noflow">Citations in PubMed identified from shared sequence and PMC links.</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/protein?LinkName=gene_protein_refseq&from_uid=11994" ref="log$=recordlinks">RefSeq Proteins</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to Protein RefSeqs</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/nuccore?LinkName=gene_nuccore_refseqrna&from_uid=11994" ref="log$=recordlinks">RefSeq RNAs</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to Nucleotide RefSeq RNAs</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/taxonomy?LinkName=gene_taxonomy&from_uid=11994" ref="log$=recordlinks">Taxonomy</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to related taxonomy entry</div>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="portlet dis-links-to-other-res brieflink">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Links to other resources</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_LinksTwo.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="Gene_LinksTwo" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_LinksTwo.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content">
|
||
<ul>
|
||
<li>
|
||
<a href="http://www.informatics.jax.org/marker/MGI:1891428">MGI</a>
|
||
</li>
|
||
<li>
|
||
<a href="http://www.ensembl.org/id/ENSMUSG00000052613">Ensembl</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.alliancegenome.org/gene/MGI:1891428">AllianceGenome</a>
|
||
</li>
|
||
<li>
|
||
<a href="http://www.informatics.jax.org/gxd/marker/MGI:1891428">Gene Expression Database (GXD) at MGI</a>
|
||
</li>
|
||
<li>
|
||
<a href="http://genome.ucsc.edu/cgi-bin/hgTracks?org=mouse&position=NM_001142746">UCSC</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://genecollections.nci.nih.gov/MGC/?ORG=Mm&LIST=BC172646">MGC</a>
|
||
</li>
|
||
<li>
|
||
<a href="http://www.genome.jp/dbget-bin/www_bget?mmu:11994">KEGG</a>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="portlet brieflink dis-general-info">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>General information</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_GeneralInfo.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="Gene_GeneralInfo" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_GeneralInfo.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content">
|
||
<ul>
|
||
<li>
|
||
<a href="/pmc/?term=PMC4383897+OR+PMC3013746+OR+PMC1761442+OR+PMC539985">About Gene</a>
|
||
</li>
|
||
<li>
|
||
<a href="/books/NBK3840">FAQ</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://ftp.ncbi.nlm.nih.gov/gene/">FTP site</a>
|
||
</li>
|
||
<li>
|
||
<a href="/books/NBK3841/">Help</a>
|
||
</li>
|
||
<li>
|
||
<a href="/books/NBK3842/">My NCBI help</a>
|
||
</li>
|
||
<li>
|
||
<a href="/books/NBK21085/">NCBI Handbook</a>
|
||
</li>
|
||
<li>
|
||
<a href="/gene/statistics/">Statistics</a>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="portlet brieflink dis-related-sites">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Related sites</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_RelatedSites.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="Gene_RelatedSites" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_RelatedSites.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content">
|
||
<ul>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/BLAST">BLAST</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/genome">Genome</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/bioproject">BioProject</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/genome/gdv/">Genome Data Viewer</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/geo">GEO</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/omim">OMIM</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/probe">Probe</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/RefSeq">RefSeq</a>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="portlet brieflink dis-feedback">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Feedback</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_Feedback.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="Gene_Feedback" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_Feedback.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content">
|
||
<ul>
|
||
<li>
|
||
<a href="https://support.ncbi.nlm.nih.gov/ics/support/ticketnewwizard.asp?style=classic&deptID=28049">Contact Help Desk</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/RefSeq/update.cgi?geneid=11994&symbol=Pcdh15">Submit Correction</a>
|
||
</li>
|
||
<li>
|
||
<a href="/gene/submit-generif?geneId=11994&sym=Pcdh15&name=protocadherin 15&org=Mus musculus">Submit GeneRIF</a>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="portlet brieflink dis-subscription">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Subscription</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_Subscription.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="Gene_Subscription" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_Subscription.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content">
|
||
<ul>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/mailman/listinfo/refseq-announce">RefSeq</a>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
</div>
|
||
|
||
<!-- <component id="Gene_RVFullReport.Gene_RightColMenuLinks"/>-->
|
||
<div class="portlet">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Recent activity</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="recent_activity" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content">
|
||
<div id="HTDisplay" class="">
|
||
<input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.Cmd" sid="1" type="hidden" />
|
||
<div class="action">
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.ClearHistory" sid="1" realname="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.ClearHistory" cmd="ClearHT" href="?cmd=ClearHT&" onclick="return false;" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.ClearHistory">
|
||
Clear
|
||
</a>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.HistoryToggle" sid="1" realname="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.HistoryToggle" class="HTOn" cmd="HTOff" href="?cmd=HTOff&" onclick="return false;" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.HistoryToggle">
|
||
Turn Off
|
||
</a>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.HistoryToggle" sid="2" realname="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.HistoryToggle" class="HTOff" cmd="HTOn" href="?cmd=HTOn&" onclick="return false;" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.HistoryToggle">
|
||
Turn On
|
||
</a>
|
||
</div>
|
||
<ul id="activity">
|
||
<li class="ra_rcd ralinkpopper two_line">
|
||
<a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=1" href="/portal/utils/pageresolver.fcgi?recordid=67d590bccde49f3df7e460dc">Pcdh15 protocadherin 15 [Mus musculus]</a>
|
||
<div class="ralinkpop offscreen_noflow">Pcdh15 protocadherin 15 [Mus musculus]<div class="brieflinkpopdesc">Gene ID:11994</div></div>
|
||
<div class="tertiary">Gene</div>
|
||
</li>
|
||
<li class="ra_rcd ralinkpopper two_line">
|
||
<a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=2" href="/portal/utils/pageresolver.fcgi?recordid=67d590a067c23b31e0b81ec5">RecName: Full=Unconventional myosin-VIIa</a>
|
||
<div class="ralinkpop offscreen_noflow">RecName: Full=Unconventional myosin-VIIa<div class="brieflinkpopdesc">gi|460018219|sp|Q13402.2|MYO7A_HUMA</div></div>
|
||
<div class="tertiary">Protein</div>
|
||
</li>
|
||
<li class="ra_rcd ralinkpopper two_line">
|
||
<a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=3" href="/portal/utils/pageresolver.fcgi?recordid=67d5908a84f3725e5934bc47">Usher syndrome type 1</a>
|
||
<div class="ralinkpop offscreen_noflow">Usher syndrome type 1<div class="brieflinkpopdesc"></div></div>
|
||
<div class="tertiary">MedGen</div>
|
||
</li>
|
||
<li class="ra_qry two_line">
|
||
<a class="htb" ref="log$=activity&linkpos=4" href="/portal/utils/pageresolver.fcgi?recordid=67d5908967c23b31e0b7b9ad">C1568247[conceptid] <span class="number">(1)</span></a>
|
||
<div class="tertiary">MedGen</div>
|
||
</li>
|
||
<li class="ra_rcd ralinkpopper two_line">
|
||
<a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=5" href="/portal/utils/pageresolver.fcgi?recordid=67d5908384f3725e593497ae">Autosomal recessive nonsyndromic hearing loss 2</a>
|
||
<div class="ralinkpop offscreen_noflow">Autosomal recessive nonsyndromic hearing loss 2<div class="brieflinkpopdesc"></div></div>
|
||
<div class="tertiary">MedGen</div>
|
||
</li>
|
||
</ul>
|
||
<p class="HTOn">Your browsing activity is empty.</p>
|
||
<p class="HTOff">Activity recording is turned off.</p>
|
||
<p id="turnOn" class="HTOff">
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.HistoryOn" sid="1" realname="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.HistoryOn" cmd="HTOn" href="?cmd=HTOn&" onclick="return false;" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.HistoryDisplay.HistoryOn">Turn recording back on</a>
|
||
</p>
|
||
<a class="seemore" href="/sites/myncbi/recentactivity">See more...</a>
|
||
</div>
|
||
</div>
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</div>
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|
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</div>
|
||
|
||
<div id="NCBIFooter_dynamic">
|
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<!--<component id="NCBIBreadcrumbs"/>
|
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<component id="NCBIHelpDesk"/>-->
|
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<noscript><img alt="" src="/stat?jsdisabled=true&ncbi_app=entrez&ncbi_db=gene&ncbi_pdid=full_report&ncbi_phid=CE886A227D57DF9100000000005A0055" /></noscript>
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<div xmlns="http://www.w3.org/1999/xhtml" class="footer" id="footer" xml:base="http://127.0.0.1/sites/static/header_footer/">
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<div id="icon-section-header" class="icon-section_header">Follow NCBI</div>
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<a class="footer-icon" id="footer_twitter" href="https://twitter.com/ncbi" aria-label="Twitter">
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<path class="cls-11" d="M101.64,243.37H57.79v-114h43.85Zm-22-131.54h-.26c-13.25,0-21.82-10.36-21.82-21.76,0-11.65,8.84-21.15,22.33-21.15S101.7,78.72,102,90.38C102,101.77,93.4,111.83,79.63,111.83Zm100.93,52.61A17.54,17.54,0,0,0,163,182v61.39H119.18s.51-105.23,0-114H163v13a54.33,54.33,0,0,1,34.54-12.66c26,0,44.39,18.8,44.39,55.29v58.35H198.1V182A17.54,17.54,0,0,0,180.56,164.44Z">
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