nih-gov/www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCSeq__gap.html

786 lines
118 KiB
HTML
Raw Blame History

This file contains ambiguous Unicode characters

This file contains Unicode characters that might be confused with other characters. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.9.0"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>NCBI C++ ToolKit: CSeq_gap Class Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
<script type="text/javascript">
jQuery.getScript("/core/alerts/alerts.js", function () {
galert(['div.nav_and_browser', 'div.header', '#universal_header',
'body > *:nth-child(1)'])
});
</script>
</head>
<body>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<div id="titlearea">
<table cellspacing="0" cellpadding="0">
<tbody>
<tr style="height: 56px;">
<td id="projectalign" style="padding-left: 0.5em;">
<div id="projectname">NCBI C++ ToolKit
</div>
</td>
</tr>
</tbody>
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.9.0 -->
<script type="text/javascript" src="menudata.js"></script>
<script type="text/javascript" src="menu.js"></script>
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
$(function() {
initMenu('',true,true,'/toolkit/','Search');
});
/* @license-end */</script>
<div id="main-nav"></div>
</div><!-- top -->
<div class="header">
<div class="summary">
<a href="#nested-classes">Classes</a> &#124;
<a href="#pub-types">Public Types</a> &#124;
<a href="#pub-methods">Public Member Functions</a> &#124;
<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
<a href="#pri-types">Private Types</a> &#124;
<a href="#pri-methods">Private Member Functions</a> &#124;
<a href="classCSeq__gap-members.html">List of all members</a> </div>
<div class="headertitle">
<div class="title">CSeq_gap Class Reference</div> </div>
</div><!--header-->
<div class="contents">
<p>
<a class="el" href = "https://www.ncbi.nlm.nih.gov/toolkitbookgh/?term=CSeq_gap">Search Toolkit Book for <i>CSeq_gap</i></a>
</p>
<p><code>#include &lt;<a class="el" href="Seq__gap_8hpp_source.html">objects/seq/Seq_gap.hpp</a>&gt;</code></p>
<div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
<img id="dynsection-0-trigger" src="closed.png" alt="+"/> Inheritance diagram for CSeq_gap:</div>
<div id="dynsection-0-summary" class="dynsummary" style="display:block;">
</div>
<div id="dynsection-0-content" class="dyncontent" style="display:none;">
<div class="center"><img src="img__inherit__graph/classCSeq__gap__inherit__graph.png" border="0" usemap="#aCSeq__gap_inherit__map" alt="Inheritance graph"/></div>
<map name="aCSeq__gap_inherit__map" id="aCSeq__gap_inherit__map">
<area shape="rect" title=" " alt="" coords="29,304,111,331"/>
<area shape="rect" href="classCSeq__gap__Base.html" title="CSeq_gap_Base ." alt="" coords="10,229,130,256"/>
<area shape="rect" href="classCSerialObject.html" title="Base class for all serializable objects." alt="" coords="19,155,121,181"/>
<area shape="rect" href="classCObject.html" title="CObject ." alt="" coords="35,80,105,107"/>
<area shape="rect" href="classCDebugDumpable.html" title=" " alt="" coords="5,5,135,32"/>
</map>
<center><span class="legend">[<a href="graph_legend.html">legend</a>]</span></center></div>
<div id="dynsection-1" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
<img id="dynsection-1-trigger" src="closed.png" alt="+"/> Collaboration diagram for CSeq_gap:</div>
<div id="dynsection-1-summary" class="dynsummary" style="display:block;">
</div>
<div id="dynsection-1-content" class="dyncontent" style="display:none;">
<div class="center"><img src="img__coll__graph/classCSeq__gap__coll__graph.png" border="0" usemap="#aCSeq__gap_coll__map" alt="Collaboration graph"/></div>
<map name="aCSeq__gap_coll__map" id="aCSeq__gap_coll__map">
<area shape="rect" title=" " alt="" coords="29,304,111,331"/>
<area shape="rect" href="classCSeq__gap__Base.html" title="CSeq_gap_Base ." alt="" coords="10,229,130,256"/>
<area shape="rect" href="classCSerialObject.html" title="Base class for all serializable objects." alt="" coords="19,155,121,181"/>
<area shape="rect" href="classCObject.html" title="CObject ." alt="" coords="35,80,105,107"/>
<area shape="rect" href="classCDebugDumpable.html" title=" " alt="" coords="5,5,135,32"/>
</map>
<center><span class="legend">[<a href="graph_legend.html">legend</a>]</span></center></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structCSeq__gap_1_1SGapTypeInfo.html">SGapTypeInfo</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Holds information about a given gap-type string. <a href="structCSeq__gap_1_1SGapTypeInfo.html#details">More...</a><br /></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:a6b17aad30405fa8a05d950f3570eb4ab"><td class="memItemLeft" align="right" valign="top">enum &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSeq__gap.html#a6b17aad30405fa8a05d950f3570eb4ab">ELinkEvid</a> { <a class="el" href="classCSeq__gap.html#a6b17aad30405fa8a05d950f3570eb4aba006b3eaaf5a3d6828d24f199e5ead8ed">eLinkEvid_UnspecifiedOnly</a>
, <a class="el" href="classCSeq__gap.html#a6b17aad30405fa8a05d950f3570eb4aba7f964bf371362ef6792838bbe602a991">eLinkEvid_Forbidden</a>
, <a class="el" href="classCSeq__gap.html#a6b17aad30405fa8a05d950f3570eb4aba8fde49184ab65d10d5a042db76541f03">eLinkEvid_Required</a>
}</td></tr>
<tr class="memdesc:a6b17aad30405fa8a05d950f3570eb4ab"><td class="mdescLeft">&#160;</td><td class="mdescRight">indicates which linkage-evidences a given gap-type can accept, if any <a href="classCSeq__gap.html#a6b17aad30405fa8a05d950f3570eb4ab">More...</a><br /></td></tr>
<tr class="separator:a6b17aad30405fa8a05d950f3570eb4ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a9e4daeba525ce3dade03009f4684638c"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCStaticArrayMap.html">CStaticArrayMap</a>&lt; <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *, <a class="el" href="structCSeq__gap_1_1SGapTypeInfo.html">SGapTypeInfo</a>, <a class="el" href="group__String.html#gaf4b25c871f888cfb5715583a380c699a">PCase_CStr</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSeq__gap.html#a9e4daeba525ce3dade03009f4684638c">TGapTypeMap</a></td></tr>
<tr class="memdesc:a9e4daeba525ce3dade03009f4684638c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map a gap-type string to its information Note that PCase_CStr, which means direct lookup is NOT insensitive to case, etc. <a href="classCSeq__gap.html#a9e4daeba525ce3dade03009f4684638c">More...</a><br /></td></tr>
<tr class="separator:a9e4daeba525ce3dade03009f4684638c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_types_classCSeq__gap__Base"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCSeq__gap__Base')"><img src="closed.png" alt="-"/>&#160;Public Types inherited from <a class="el" href="classCSeq__gap__Base.html">CSeq_gap_Base</a></td></tr>
<tr class="memitem:ga9af5a99cce4cf50e7dc1c768f00cb58e inherit pub_types_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">enum &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga9af5a99cce4cf50e7dc1c768f00cb58e">EType</a> { <br />
&#160;&#160;<a class="el" href="group__dataspec__NCBI__Sequence.html#gga9af5a99cce4cf50e7dc1c768f00cb58eadd711ad84eab78b58aa339da0532222e">eType_unknown</a> = 0
, <a class="el" href="group__dataspec__NCBI__Sequence.html#gga9af5a99cce4cf50e7dc1c768f00cb58eab40b116589de212576af6af514ecf255">eType_fragment</a> = 1
, <a class="el" href="group__dataspec__NCBI__Sequence.html#gga9af5a99cce4cf50e7dc1c768f00cb58ea6616b3a966ee3078d3ec81f41c407b05">eType_clone</a> = 2
, <a class="el" href="group__dataspec__NCBI__Sequence.html#gga9af5a99cce4cf50e7dc1c768f00cb58ea20dd375fb64932edfce94cc39e242e7b">eType_short_arm</a> = 3
, <br />
&#160;&#160;<a class="el" href="group__dataspec__NCBI__Sequence.html#gga9af5a99cce4cf50e7dc1c768f00cb58ea8223c40cf3574bcc2ba693a80458ce94">eType_heterochromatin</a> = 4
, <a class="el" href="group__dataspec__NCBI__Sequence.html#gga9af5a99cce4cf50e7dc1c768f00cb58ea0898a2befbc1fcc7f205f9691ea4646c">eType_centromere</a> = 5
, <a class="el" href="group__dataspec__NCBI__Sequence.html#gga9af5a99cce4cf50e7dc1c768f00cb58eab37484104cf4a316186a5444a5ee1bc2">eType_telomere</a> = 6
, <a class="el" href="group__dataspec__NCBI__Sequence.html#gga9af5a99cce4cf50e7dc1c768f00cb58ea9974cd54cc99ec1d80b9972d8b150144">eType_repeat</a> = 7
, <br />
&#160;&#160;<a class="el" href="group__dataspec__NCBI__Sequence.html#gga9af5a99cce4cf50e7dc1c768f00cb58ea7ed20b70133caf562c0e64a1488adab5">eType_contig</a> = 8
, <a class="el" href="group__dataspec__NCBI__Sequence.html#gga9af5a99cce4cf50e7dc1c768f00cb58eaf7fd9c6c90bee50cf8a03429e170ec37">eType_scaffold</a> = 9
, <a class="el" href="group__dataspec__NCBI__Sequence.html#gga9af5a99cce4cf50e7dc1c768f00cb58ea12c43c986e08f33ae3776e6d8c8ee573">eType_contamination</a> = 10
, <a class="el" href="group__dataspec__NCBI__Sequence.html#gga9af5a99cce4cf50e7dc1c768f00cb58ea8fda32bad97ed62f2597d7d219ef3041">eType_other</a> = 255
<br />
}</td></tr>
<tr class="separator:ga9af5a99cce4cf50e7dc1c768f00cb58e inherit pub_types_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga5e6211ae8bebe4d8b751d424c8e64dcc inherit pub_types_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">enum &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga5e6211ae8bebe4d8b751d424c8e64dcc">ELinkage</a> { <a class="el" href="group__dataspec__NCBI__Sequence.html#gga5e6211ae8bebe4d8b751d424c8e64dcca7b33682900d1f59b9acae61df16ce9dc">eLinkage_unlinked</a> = 0
, <a class="el" href="group__dataspec__NCBI__Sequence.html#gga5e6211ae8bebe4d8b751d424c8e64dcca2f11adf28ed29997f2161723e3a3d851">eLinkage_linked</a> = 1
, <a class="el" href="group__dataspec__NCBI__Sequence.html#gga5e6211ae8bebe4d8b751d424c8e64dcca33daf1671c2272c8bd265613d34cfaf5">eLinkage_other</a> = 255
}</td></tr>
<tr class="separator:ga5e6211ae8bebe4d8b751d424c8e64dcc inherit pub_types_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gabf60e5949aaaf3246a508e1b9e47e2ac inherit pub_types_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gabf60e5949aaaf3246a508e1b9e47e2ac">E_memberIndex</a> { <a class="el" href="group__dataspec__NCBI__Sequence.html#ggabf60e5949aaaf3246a508e1b9e47e2acad2c4d82f7037e318e1aa6f58d06bd153">e__allMandatory</a> = 0
, <a class="el" href="group__dataspec__NCBI__Sequence.html#ggabf60e5949aaaf3246a508e1b9e47e2acad7a4adc15efe8d9eb513672c61274a25">e_type</a>
, <a class="el" href="group__dataspec__NCBI__Sequence.html#ggabf60e5949aaaf3246a508e1b9e47e2aca66a7c1ed369c0f5942d8f6e44a640e5b">e_linkage</a>
, <a class="el" href="group__dataspec__NCBI__Sequence.html#ggabf60e5949aaaf3246a508e1b9e47e2acaffbeff9850ffdb5a92cf691e59891513">e_linkage_evidence</a>
}</td></tr>
<tr class="separator:gabf60e5949aaaf3246a508e1b9e47e2ac inherit pub_types_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga0f4ba027c58ba40c94b375ebbf2b9e39 inherit pub_types_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga0f4ba027c58ba40c94b375ebbf2b9e39">TType</a></td></tr>
<tr class="separator:ga0f4ba027c58ba40c94b375ebbf2b9e39 inherit pub_types_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga7594309118b239bb6c3ef2bd1924dafa inherit pub_types_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga7594309118b239bb6c3ef2bd1924dafa">TLinkage</a></td></tr>
<tr class="separator:ga7594309118b239bb6c3ef2bd1924dafa inherit pub_types_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaed7d154e6a7f4b00e5b35cc50441479b inherit pub_types_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">typedef list&lt; <a class="el" href="classCRef.html">CRef</a>&lt; <a class="el" href="classCLinkage__evidence.html">CLinkage_evidence</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gaed7d154e6a7f4b00e5b35cc50441479b">TLinkage_evidence</a></td></tr>
<tr class="separator:gaed7d154e6a7f4b00e5b35cc50441479b inherit pub_types_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga62c1c4d1d23104cd1170f7e1d66cd738 inherit pub_types_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCSerialObject_1_1CMemberIndex.html">Tparent::CMemberIndex</a>&lt; <a class="el" href="group__dataspec__NCBI__Sequence.html#gabf60e5949aaaf3246a508e1b9e47e2ac">E_memberIndex</a>, 4 &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga62c1c4d1d23104cd1170f7e1d66cd738">TmemberIndex</a></td></tr>
<tr class="separator:ga62c1c4d1d23104cd1170f7e1d66cd738 inherit pub_types_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_types_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCObject')"><img src="closed.png" alt="-"/>&#160;Public Types inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
<tr class="memitem:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">enum &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> { <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca2b8c59f649cc88eeb7eaeba939e2838d">eAllocFillNone</a> = 1
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca336d7ff658b673c2e8fe3aed9b155f04">eAllocFillZero</a>
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588ccab3631bf1c36b77f950d94372290deb76">eAllocFillPattern</a>
}</td></tr>
<tr class="memdesc:ga3cf5f3ac0aef32c4aab1fa66513588cc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Control filling of newly allocated memory. <a href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">More...</a><br /></td></tr>
<tr class="separator:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCObjectCounterLocker.html">CObjectCounterLocker</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">TLockerType</a></td></tr>
<tr class="memdesc:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Default locker type for <a class="el" href="classCRef.html" title="CRef .">CRef</a>. <a href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">More...</a><br /></td></tr>
<tr class="separator:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef atomic&lt; <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">TCounter</a></td></tr>
<tr class="memdesc:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Counter type is CAtomiCounter. <a href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">More...</a><br /></td></tr>
<tr class="separator:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a></td></tr>
<tr class="memdesc:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Alias for value type of counter. <a href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">More...</a><br /></td></tr>
<tr class="separator:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a60dadb6f607edd1f811916bc17f4a360"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSeq__gap.html#a60dadb6f607edd1f811916bc17f4a360">CSeq_gap</a> (void)</td></tr>
<tr class="separator:a60dadb6f607edd1f811916bc17f4a360"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af9370598077ba498347e57bf67b27082"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSeq__gap.html#af9370598077ba498347e57bf67b27082">~CSeq_gap</a> (void)</td></tr>
<tr class="separator:af9370598077ba498347e57bf67b27082"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a510f2927ecf33c31453f18af33f4a873"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSeq__gap.html#a510f2927ecf33c31453f18af33f4a873">ChangeType</a> (<a class="el" href="group__dataspec__NCBI__Sequence.html#ga0f4ba027c58ba40c94b375ebbf2b9e39">TType</a> linkage_type)</td></tr>
<tr class="separator:a510f2927ecf33c31453f18af33f4a873"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aacb423f6f002072594d8b032b77c865f"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSeq__gap.html#aacb423f6f002072594d8b032b77c865f">SetLinkageTypeScaffold</a> (<a class="el" href="group__dataspec__NCBI__Sequence.html#ga0dcbd347f93db819413dd15ec777b63a">CLinkage_evidence::TType</a> evidence_type)</td></tr>
<tr class="separator:aacb423f6f002072594d8b032b77c865f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a769f02fa234383bbddfa1cd39dc0377c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSeq__gap.html#a769f02fa234383bbddfa1cd39dc0377c">SetLinkageTypeLinkedRepeat</a> (<a class="el" href="group__dataspec__NCBI__Sequence.html#ga0dcbd347f93db819413dd15ec777b63a">CLinkage_evidence::TType</a> evidence_type)</td></tr>
<tr class="separator:a769f02fa234383bbddfa1cd39dc0377c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a19a16459dae86470b01ca7b84b318648"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSeq__gap.html#a19a16459dae86470b01ca7b84b318648">AddLinkageEvidence</a> (<a class="el" href="group__dataspec__NCBI__Sequence.html#ga0dcbd347f93db819413dd15ec777b63a">CLinkage_evidence::TType</a> evidence_type)</td></tr>
<tr class="separator:a19a16459dae86470b01ca7b84b318648"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classCSeq__gap__Base"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCSeq__gap__Base')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classCSeq__gap__Base.html">CSeq_gap_Base</a></td></tr>
<tr class="memitem:ga2c6c0e58fc3fa49cf85cfcc17a854cad inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga2c6c0e58fc3fa49cf85cfcc17a854cad">CSeq_gap_Base</a> (void)</td></tr>
<tr class="separator:ga2c6c0e58fc3fa49cf85cfcc17a854cad inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga2a26c3c6edaddfa88c901696f8cec09d inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga2a26c3c6edaddfa88c901696f8cec09d">~CSeq_gap_Base</a> (void)</td></tr>
<tr class="separator:ga2a26c3c6edaddfa88c901696f8cec09d inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga00280b844401cd102e4451e9b0a72620 inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga00280b844401cd102e4451e9b0a72620">DECLARE_INTERNAL_TYPE_INFO</a> ()</td></tr>
<tr class="separator:ga00280b844401cd102e4451e9b0a72620 inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga93f1b2eb2dc9457967acd7e68ba7b597 inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga93f1b2eb2dc9457967acd7e68ba7b597">IsSetType</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga93f1b2eb2dc9457967acd7e68ba7b597 inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if a value has been assigned to Type data member. <a href="group__dataspec__NCBI__Sequence.html#ga93f1b2eb2dc9457967acd7e68ba7b597">More...</a><br /></td></tr>
<tr class="separator:ga93f1b2eb2dc9457967acd7e68ba7b597 inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga171e6c500a99a08299aabd5fffa5e8b7 inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga171e6c500a99a08299aabd5fffa5e8b7">CanGetType</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga171e6c500a99a08299aabd5fffa5e8b7 inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetType method. <a href="group__dataspec__NCBI__Sequence.html#ga171e6c500a99a08299aabd5fffa5e8b7">More...</a><br /></td></tr>
<tr class="separator:ga171e6c500a99a08299aabd5fffa5e8b7 inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gacaefd07e057b9f51dfc1519d36e2226f inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gacaefd07e057b9f51dfc1519d36e2226f">ResetType</a> (void)</td></tr>
<tr class="memdesc:gacaefd07e057b9f51dfc1519d36e2226f inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset Type data member. <a href="group__dataspec__NCBI__Sequence.html#gacaefd07e057b9f51dfc1519d36e2226f">More...</a><br /></td></tr>
<tr class="separator:gacaefd07e057b9f51dfc1519d36e2226f inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga393e3f9242cca531003f0ba4d795e7ff inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga0f4ba027c58ba40c94b375ebbf2b9e39">TType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga393e3f9242cca531003f0ba4d795e7ff">GetType</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga393e3f9242cca531003f0ba4d795e7ff inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the Type member data. <a href="group__dataspec__NCBI__Sequence.html#ga393e3f9242cca531003f0ba4d795e7ff">More...</a><br /></td></tr>
<tr class="separator:ga393e3f9242cca531003f0ba4d795e7ff inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga5ae2a0d564e292bb58a8afc251e7f4bc inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga5ae2a0d564e292bb58a8afc251e7f4bc">SetType</a> (<a class="el" href="group__dataspec__NCBI__Sequence.html#ga0f4ba027c58ba40c94b375ebbf2b9e39">TType</a> <a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
<tr class="memdesc:ga5ae2a0d564e292bb58a8afc251e7f4bc inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assign a value to Type data member. <a href="group__dataspec__NCBI__Sequence.html#ga5ae2a0d564e292bb58a8afc251e7f4bc">More...</a><br /></td></tr>
<tr class="separator:ga5ae2a0d564e292bb58a8afc251e7f4bc inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaedfed04d098e88ac97a665257732ef6b inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga0f4ba027c58ba40c94b375ebbf2b9e39">TType</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gaedfed04d098e88ac97a665257732ef6b">SetType</a> (void)</td></tr>
<tr class="memdesc:gaedfed04d098e88ac97a665257732ef6b inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assign a value to Type data member. <a href="group__dataspec__NCBI__Sequence.html#gaedfed04d098e88ac97a665257732ef6b">More...</a><br /></td></tr>
<tr class="separator:gaedfed04d098e88ac97a665257732ef6b inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga05cde1281726e24b71961b36d3811ab5 inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga05cde1281726e24b71961b36d3811ab5">IsSetLinkage</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga05cde1281726e24b71961b36d3811ab5 inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if a value has been assigned to Linkage data member. <a href="group__dataspec__NCBI__Sequence.html#ga05cde1281726e24b71961b36d3811ab5">More...</a><br /></td></tr>
<tr class="separator:ga05cde1281726e24b71961b36d3811ab5 inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaad1738c08be1bf96e25aaa0afde4b21a inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gaad1738c08be1bf96e25aaa0afde4b21a">CanGetLinkage</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gaad1738c08be1bf96e25aaa0afde4b21a inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetLinkage method. <a href="group__dataspec__NCBI__Sequence.html#gaad1738c08be1bf96e25aaa0afde4b21a">More...</a><br /></td></tr>
<tr class="separator:gaad1738c08be1bf96e25aaa0afde4b21a inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga8d0ea21b2ae46bc3d5f66be7365a018d inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga8d0ea21b2ae46bc3d5f66be7365a018d">ResetLinkage</a> (void)</td></tr>
<tr class="memdesc:ga8d0ea21b2ae46bc3d5f66be7365a018d inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset Linkage data member. <a href="group__dataspec__NCBI__Sequence.html#ga8d0ea21b2ae46bc3d5f66be7365a018d">More...</a><br /></td></tr>
<tr class="separator:ga8d0ea21b2ae46bc3d5f66be7365a018d inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga199bd2792c8236a8fb4b5b5b1837b401 inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga7594309118b239bb6c3ef2bd1924dafa">TLinkage</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga199bd2792c8236a8fb4b5b5b1837b401">GetLinkage</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga199bd2792c8236a8fb4b5b5b1837b401 inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the Linkage member data. <a href="group__dataspec__NCBI__Sequence.html#ga199bd2792c8236a8fb4b5b5b1837b401">More...</a><br /></td></tr>
<tr class="separator:ga199bd2792c8236a8fb4b5b5b1837b401 inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gac97bc2464c789e17769521f38c61044d inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gac97bc2464c789e17769521f38c61044d">SetLinkage</a> (<a class="el" href="group__dataspec__NCBI__Sequence.html#ga7594309118b239bb6c3ef2bd1924dafa">TLinkage</a> <a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
<tr class="memdesc:gac97bc2464c789e17769521f38c61044d inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assign a value to Linkage data member. <a href="group__dataspec__NCBI__Sequence.html#gac97bc2464c789e17769521f38c61044d">More...</a><br /></td></tr>
<tr class="separator:gac97bc2464c789e17769521f38c61044d inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaeb88697ea30ab4c9d9c96ea467b38815 inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga7594309118b239bb6c3ef2bd1924dafa">TLinkage</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gaeb88697ea30ab4c9d9c96ea467b38815">SetLinkage</a> (void)</td></tr>
<tr class="memdesc:gaeb88697ea30ab4c9d9c96ea467b38815 inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assign a value to Linkage data member. <a href="group__dataspec__NCBI__Sequence.html#gaeb88697ea30ab4c9d9c96ea467b38815">More...</a><br /></td></tr>
<tr class="separator:gaeb88697ea30ab4c9d9c96ea467b38815 inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaf0eead52192bc2e4c613a5c190741748 inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gaf0eead52192bc2e4c613a5c190741748">IsSetLinkage_evidence</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gaf0eead52192bc2e4c613a5c190741748 inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if a value has been assigned to Linkage_evidence data member. <a href="group__dataspec__NCBI__Sequence.html#gaf0eead52192bc2e4c613a5c190741748">More...</a><br /></td></tr>
<tr class="separator:gaf0eead52192bc2e4c613a5c190741748 inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga3a500e760aae63a1f02362cd67699284 inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga3a500e760aae63a1f02362cd67699284">CanGetLinkage_evidence</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga3a500e760aae63a1f02362cd67699284 inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if it is safe to call GetLinkage_evidence method. <a href="group__dataspec__NCBI__Sequence.html#ga3a500e760aae63a1f02362cd67699284">More...</a><br /></td></tr>
<tr class="separator:ga3a500e760aae63a1f02362cd67699284 inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaa90dd6623e86661f69e258ad10299ebc inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gaa90dd6623e86661f69e258ad10299ebc">ResetLinkage_evidence</a> (void)</td></tr>
<tr class="memdesc:gaa90dd6623e86661f69e258ad10299ebc inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset Linkage_evidence data member. <a href="group__dataspec__NCBI__Sequence.html#gaa90dd6623e86661f69e258ad10299ebc">More...</a><br /></td></tr>
<tr class="separator:gaa90dd6623e86661f69e258ad10299ebc inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga7a5e49da4fe4c10bbbfee243888b82fd inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__dataspec__NCBI__Sequence.html#gaed7d154e6a7f4b00e5b35cc50441479b">TLinkage_evidence</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga7a5e49da4fe4c10bbbfee243888b82fd">GetLinkage_evidence</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga7a5e49da4fe4c10bbbfee243888b82fd inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the Linkage_evidence member data. <a href="group__dataspec__NCBI__Sequence.html#ga7a5e49da4fe4c10bbbfee243888b82fd">More...</a><br /></td></tr>
<tr class="separator:ga7a5e49da4fe4c10bbbfee243888b82fd inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gac4fc19d3345a0553777e8dedb690c30e inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__Sequence.html#gaed7d154e6a7f4b00e5b35cc50441479b">TLinkage_evidence</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gac4fc19d3345a0553777e8dedb690c30e">SetLinkage_evidence</a> (void)</td></tr>
<tr class="memdesc:gac4fc19d3345a0553777e8dedb690c30e inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assign a value to Linkage_evidence data member. <a href="group__dataspec__NCBI__Sequence.html#gac4fc19d3345a0553777e8dedb690c30e">More...</a><br /></td></tr>
<tr class="separator:gac4fc19d3345a0553777e8dedb690c30e inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga0184467a4c59dbd4c7c55208f046ee28 inherit pub_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga0184467a4c59dbd4c7c55208f046ee28">Reset</a> (void)</td></tr>
<tr class="memdesc:ga0184467a4c59dbd4c7c55208f046ee28 inherit pub_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset the whole object. <a href="group__dataspec__NCBI__Sequence.html#ga0184467a4c59dbd4c7c55208f046ee28">More...</a><br /></td></tr>
<tr class="separator:ga0184467a4c59dbd4c7c55208f046ee28 inherit pub_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classCSerialObject"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCSerialObject')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classCSerialObject.html">CSerialObject</a></td></tr>
<tr class="memitem:ga8575b1015c4a4f3336b6e1c0a4324b71 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga8575b1015c4a4f3336b6e1c0a4324b71">CSerialObject</a> (void)</td></tr>
<tr class="separator:ga8575b1015c4a4f3336b6e1c0a4324b71 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaf278b96157abad20b5d944fb83d32fb1 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gaf278b96157abad20b5d944fb83d32fb1">~CSerialObject</a> (void)</td></tr>
<tr class="separator:gaf278b96157abad20b5d944fb83d32fb1 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gacb5d8a2e6878e58aeaeaf342081f0b7f inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCTypeInfo.html">CTypeInfo</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gacb5d8a2e6878e58aeaeaf342081f0b7f">GetThisTypeInfo</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> =0</td></tr>
<tr class="separator:gacb5d8a2e6878e58aeaeaf342081f0b7f inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga6c7f903717f7a272091acf5124cfd903 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga6c7f903717f7a272091acf5124cfd903">Assign</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSerialObject.html">CSerialObject</a> &amp;source, <a class="el" href="group__GenClassSupport.html#ga059327d78b8d9e780d720f141674f241">ESerialRecursionMode</a> how=<a class="el" href="group__GenClassSupport.html#gga059327d78b8d9e780d720f141674f241abe759672df31c77b76afeea2cd4c0db7">eRecursive</a>)</td></tr>
<tr class="memdesc:ga6c7f903717f7a272091acf5124cfd903 inherit pub_methods_classCSerialObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set object to copy of another one. <a href="group__GenClassSupport.html#ga6c7f903717f7a272091acf5124cfd903">More...</a><br /></td></tr>
<tr class="separator:ga6c7f903717f7a272091acf5124cfd903 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gae694abd95a4753598c398540f3467d99 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gae694abd95a4753598c398540f3467d99">Equals</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSerialObject.html">CSerialObject</a> &amp;object, <a class="el" href="group__GenClassSupport.html#ga059327d78b8d9e780d720f141674f241">ESerialRecursionMode</a> how=<a class="el" href="group__GenClassSupport.html#gga059327d78b8d9e780d720f141674f241abe759672df31c77b76afeea2cd4c0db7">eRecursive</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gae694abd95a4753598c398540f3467d99 inherit pub_methods_classCSerialObject"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if both objects contain the same values. <a href="group__GenClassSupport.html#gae694abd95a4753598c398540f3467d99">More...</a><br /></td></tr>
<tr class="separator:gae694abd95a4753598c398540f3467d99 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga0daf4906b8f2e6382118c4a018491761 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga0daf4906b8f2e6382118c4a018491761">DebugDump</a> (<a class="el" href="classCDebugDumpContext.html">CDebugDumpContext</a> ddc, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga0daf4906b8f2e6382118c4a018491761 inherit pub_methods_classCSerialObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define method for dumping debug information. <a href="group__GenClassSupport.html#ga0daf4906b8f2e6382118c4a018491761">More...</a><br /></td></tr>
<tr class="separator:ga0daf4906b8f2e6382118c4a018491761 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga7382b4cd30306d9444f85abd912ff61e inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga7382b4cd30306d9444f85abd912ff61e">ThrowUnassigned</a> (<a class="el" href="group__GenClassSupport.html#ga4045c609bd35431331d0055309404111">TMemberIndex</a> index) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="separator:ga7382b4cd30306d9444f85abd912ff61e inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gab5506012856f3627d88368a24e1eb254 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gab5506012856f3627d88368a24e1eb254">ThrowUnassigned</a> (<a class="el" href="group__GenClassSupport.html#ga4045c609bd35431331d0055309404111">TMemberIndex</a> index, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *<a class="el" href="dbapi__sample__base_8hpp.html#a8334353b550f5c3b6d2ea57d716ab2e2">file_name</a>, <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> file_line) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="separator:gab5506012856f3627d88368a24e1eb254 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga937551d0a9c61c7ff537ac19ec37904d inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga937551d0a9c61c7ff537ac19ec37904d">HasNamespaceName</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga937551d0a9c61c7ff537ac19ec37904d inherit pub_methods_classCSerialObject"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object data type has namespace name. <a href="group__GenClassSupport.html#ga937551d0a9c61c7ff537ac19ec37904d">More...</a><br /></td></tr>
<tr class="separator:ga937551d0a9c61c7ff537ac19ec37904d inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga901688404844d3c9be43320e1d51c485 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga901688404844d3c9be43320e1d51c485">GetNamespaceName</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga901688404844d3c9be43320e1d51c485 inherit pub_methods_classCSerialObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get namespace name. <a href="group__GenClassSupport.html#ga901688404844d3c9be43320e1d51c485">More...</a><br /></td></tr>
<tr class="separator:ga901688404844d3c9be43320e1d51c485 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gacfc7e87713da36496323f5477db80219 inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gacfc7e87713da36496323f5477db80219">HasNamespacePrefix</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gacfc7e87713da36496323f5477db80219 inherit pub_methods_classCSerialObject"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if data type has namespace prefix. <a href="group__GenClassSupport.html#gacfc7e87713da36496323f5477db80219">More...</a><br /></td></tr>
<tr class="separator:gacfc7e87713da36496323f5477db80219 inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gae8fa62abf96f3ed3cec903dce6a6a33a inherit pub_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gae8fa62abf96f3ed3cec903dce6a6a33a">GetNamespacePrefix</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:gae8fa62abf96f3ed3cec903dce6a6a33a inherit pub_methods_classCSerialObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get namespace prefix. <a href="group__GenClassSupport.html#gae8fa62abf96f3ed3cec903dce6a6a33a">More...</a><br /></td></tr>
<tr class="separator:gae8fa62abf96f3ed3cec903dce6a6a33a inherit pub_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCObject')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
<tr class="memitem:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">CObject</a> (void)</td></tr>
<tr class="memdesc:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor. <a href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">More...</a><br /></td></tr>
<tr class="separator:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">CObject</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &amp;src)</td></tr>
<tr class="memdesc:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy constructor. <a href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">More...</a><br /></td></tr>
<tr class="separator:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">~CObject</a> (void)</td></tr>
<tr class="memdesc:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor. <a href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">More...</a><br /></td></tr>
<tr class="separator:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCObject.html">CObject</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &amp;src) <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
<tr class="memdesc:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assignment operator. <a href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">More...</a><br /></td></tr>
<tr class="separator:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">CanBeDeleted</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
<tr class="memdesc:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object can be deleted. <a href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">More...</a><br /></td></tr>
<tr class="separator:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">IsAllocatedInPool</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
<tr class="memdesc:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is allocated in memory pool (not system heap) <a href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">More...</a><br /></td></tr>
<tr class="separator:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">Referenced</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
<tr class="memdesc:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced. <a href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">More...</a><br /></td></tr>
<tr class="separator:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">ReferencedOnlyOnce</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
<tr class="memdesc:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced only once. <a href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">More...</a><br /></td></tr>
<tr class="separator:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">AddReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Add reference to object. <a href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">More...</a><br /></td></tr>
<tr class="separator:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">RemoveReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Remove reference to object. <a href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">More...</a><br /></td></tr>
<tr class="separator:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">ReleaseReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="memdesc:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Remove reference without deleting object. <a href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">More...</a><br /></td></tr>
<tr class="separator:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">DoNotDeleteThisObject</a> (void)</td></tr>
<tr class="memdesc:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mark this object as not allocated in heap &ndash; do not delete this object. <a href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">More...</a><br /></td></tr>
<tr class="separator:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">DoDeleteThisObject</a> (void)</td></tr>
<tr class="memdesc:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mark this object as allocated in heap &ndash; object can be deleted. <a href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">More...</a><br /></td></tr>
<tr class="separator:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
<tr class="memdesc:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define new operator for memory allocation. <a href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">More...</a><br /></td></tr>
<tr class="separator:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">operator new[]</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
<tr class="memdesc:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define new[] operator for 'array' memory allocation. <a href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">More...</a><br /></td></tr>
<tr class="separator:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">operator delete</a> (void *ptr)</td></tr>
<tr class="memdesc:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define delete operator for memory deallocation. <a href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">More...</a><br /></td></tr>
<tr class="separator:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">operator delete[]</a> (void *ptr)</td></tr>
<tr class="memdesc:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define delete[] operator for memory deallocation. <a href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">More...</a><br /></td></tr>
<tr class="separator:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, void *place)</td></tr>
<tr class="memdesc:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define new operator. <a href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">More...</a><br /></td></tr>
<tr class="separator:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">operator delete</a> (void *ptr, void *place)</td></tr>
<tr class="memdesc:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">More...</a><br /></td></tr>
<tr class="separator:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
<tr class="memdesc:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define new operator using memory pool. <a href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">More...</a><br /></td></tr>
<tr class="separator:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">operator delete</a> (void *ptr, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
<tr class="memdesc:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">More...</a><br /></td></tr>
<tr class="separator:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
<tr class="memitem:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ae8723856215191ef748f19ff73e8ba4e">CDebugDumpable</a> (void)</td></tr>
<tr class="separator:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#acdeaaedfabb4cc4a64108dbb854f4b51">~CDebugDumpable</a> (void)</td></tr>
<tr class="separator:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a4ff9ec248a38f17b7d8deb3f78318a37">DebugDumpText</a> (ostream &amp;<a class="el" href="events__unit__test_8cpp.html#ac3c18c078fe416626b6c1dcc3e780245">out</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &amp;bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="separator:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#aa0101dfdc0ae0cbd0cb1609c96f96229">DebugDumpFormat</a> (<a class="el" href="classCDebugDumpFormatter.html">CDebugDumpFormatter</a> &amp;ddf, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &amp;bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="separator:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a19047c92521e5f3ad2a14bab26a49b51">DumpToConsole</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
<tr class="separator:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:a89055edcf2c65bcd38e46e25500fc018"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="structCSeq__gap_1_1SGapTypeInfo.html">SGapTypeInfo</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSeq__gap.html#a89055edcf2c65bcd38e46e25500fc018">NameToGapTypeInfo</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCTempString.html">CTempString</a> &amp;sName)</td></tr>
<tr class="memdesc:a89055edcf2c65bcd38e46e25500fc018"><td class="mdescLeft">&#160;</td><td class="mdescRight">From a gap-type string, get the <a class="el" href="structCSeq__gap_1_1SGapTypeInfo.html" title="Holds information about a given gap-type string.">SGapTypeInfo</a>, insensitive to case, etc. <a href="classCSeq__gap.html#a89055edcf2c65bcd38e46e25500fc018">More...</a><br /></td></tr>
<tr class="separator:a89055edcf2c65bcd38e46e25500fc018"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a643042ca82ab5078adeaf29757ef4560"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__gap.html#a9e4daeba525ce3dade03009f4684638c">TGapTypeMap</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSeq__gap.html#a643042ca82ab5078adeaf29757ef4560">GetNameToGapTypeInfoMap</a> (void)</td></tr>
<tr class="memdesc:a643042ca82ab5078adeaf29757ef4560"><td class="mdescLeft">&#160;</td><td class="mdescRight">This is for if the user needs to get the gap-type string to <a class="el" href="structCSeq__gap_1_1SGapTypeInfo.html" title="Holds information about a given gap-type string.">SGapTypeInfo</a> info directly (For example, to iterate through all possible types). <a href="classCSeq__gap.html#a643042ca82ab5078adeaf29757ef4560">More...</a><br /></td></tr>
<tr class="separator:a643042ca82ab5078adeaf29757ef4560"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_static_methods_classCSeq__gap__Base"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCSeq__gap__Base')"><img src="closed.png" alt="-"/>&#160;Static Public Member Functions inherited from <a class="el" href="classCSeq__gap__Base.html">CSeq_gap_Base</a></td></tr>
<tr class="memitem:gabdef8c60eb76cbe668d1099fa7a95deb inherit pub_static_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> NCBI_NS_NCBI::CEnumeratedTypeValues *<a class="el" href="group__GenClassSupport.html#gaab9bc228ca2014a5451d4a8d47bee150">ENUM_METHOD_NAME</a>()&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#gabdef8c60eb76cbe668d1099fa7a95deb">EType</a> (void)</td></tr>
<tr class="memdesc:gabdef8c60eb76cbe668d1099fa7a95deb inherit pub_static_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Access to EType's attributes (values, names) as defined in spec. <a href="group__dataspec__NCBI__Sequence.html#gabdef8c60eb76cbe668d1099fa7a95deb">More...</a><br /></td></tr>
<tr class="separator:gabdef8c60eb76cbe668d1099fa7a95deb inherit pub_static_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga8ddb4a7671dfab56281e0686b7de54c6 inherit pub_static_methods_classCSeq__gap__Base"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> NCBI_NS_NCBI::CEnumeratedTypeValues *<a class="el" href="group__GenClassSupport.html#gaab9bc228ca2014a5451d4a8d47bee150">ENUM_METHOD_NAME</a>()&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga8ddb4a7671dfab56281e0686b7de54c6">ELinkage</a> (void)</td></tr>
<tr class="memdesc:ga8ddb4a7671dfab56281e0686b7de54c6 inherit pub_static_methods_classCSeq__gap__Base"><td class="mdescLeft">&#160;</td><td class="mdescRight">Access to ELinkage's attributes (values, names) as defined in spec. <a href="group__dataspec__NCBI__Sequence.html#ga8ddb4a7671dfab56281e0686b7de54c6">More...</a><br /></td></tr>
<tr class="separator:ga8ddb4a7671dfab56281e0686b7de54c6 inherit pub_static_methods_classCSeq__gap__Base"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_static_methods_classCSerialObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCSerialObject')"><img src="closed.png" alt="-"/>&#160;Static Public Member Functions inherited from <a class="el" href="classCSerialObject.html">CSerialObject</a></td></tr>
<tr class="memitem:gab2a92c7a5b5900317294b85e854db07e inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gab2a92c7a5b5900317294b85e854db07e">SetVerifyDataThread</a> (<a class="el" href="group__GenClassSupport.html#ga58e0144d240fc7ad45518d4c3ba735e1">ESerialVerifyData</a> <a class="el" href="ftds14_2freetds_2dblib_2unittests_2t0002_8c.html#a80ddcf418c95fb872f5eeccb9908b4c7">verify</a>)</td></tr>
<tr class="separator:gab2a92c7a5b5900317294b85e854db07e inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga2e3bead397d7ec0fffde866cd890267e inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga2e3bead397d7ec0fffde866cd890267e">SetVerifyDataGlobal</a> (<a class="el" href="group__GenClassSupport.html#ga58e0144d240fc7ad45518d4c3ba735e1">ESerialVerifyData</a> <a class="el" href="ftds14_2freetds_2dblib_2unittests_2t0002_8c.html#a80ddcf418c95fb872f5eeccb9908b4c7">verify</a>)</td></tr>
<tr class="separator:ga2e3bead397d7ec0fffde866cd890267e inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gada3dbb83951d0bed9bde06c6c4ede9e2 inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gada3dbb83951d0bed9bde06c6c4ede9e2">UnassignedString</a> (void)</td></tr>
<tr class="separator:gada3dbb83951d0bed9bde06c6c4ede9e2 inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga123d82fb69550b6418ad5d69e752873a inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__STL.html#ga88e22aab83a29bae20f5354e89b041e3">CStringUTF8</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga123d82fb69550b6418ad5d69e752873a">UnassignedStringUTF8</a> (void)</td></tr>
<tr class="separator:ga123d82fb69550b6418ad5d69e752873a inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga1d897c6ce0f541df2487600cedd9f40a inherit pub_static_methods_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> char&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga1d897c6ce0f541df2487600cedd9f40a">UnassignedByte</a> (void)</td></tr>
<tr class="separator:ga1d897c6ce0f541df2487600cedd9f40a inherit pub_static_methods_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_static_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCObject')"><img src="closed.png" alt="-"/>&#160;Static Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
<tr class="memitem:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">ThrowNullPointerException</a> (void)</td></tr>
<tr class="memdesc:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define method to throw null pointer exception. <a href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">More...</a><br /></td></tr>
<tr class="separator:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae042a181e665dd40945c1c1a7a6bc5d1">ThrowNullPointerException</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> type_info &amp;<a class="el" href="structtype.html">type</a>)</td></tr>
<tr class="separator:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga4b6f1beef2a1f37c68f7f3b1aac471d8">GetAllocFillMode</a> (void)</td></tr>
<tr class="separator:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga42eceef165a83cc081837a373ab6dd67">SetAllocFillMode</a> (<a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> <a class="el" href="mdb__load_8c.html#a1ea5d0cb93f22f7d0fdf804bd68c3326">mode</a>)</td></tr>
<tr class="separator:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">SetAllocFillMode</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &amp;<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
<tr class="memdesc:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set mode from configuration parameter value. <a href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">More...</a><br /></td></tr>
<tr class="separator:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_static_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/>&#160;Static Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
<tr class="memitem:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ab6ba54280c562230f65733cca0560c83">EnableDebugDump</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> on)</td></tr>
<tr class="separator:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-types"></a>
Private Types</h2></td></tr>
<tr class="memitem:aa550699d919d4a47bd057f0b652c23cf"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCSeq__gap__Base.html">CSeq_gap_Base</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSeq__gap.html#aa550699d919d4a47bd057f0b652c23cf">Tparent</a></td></tr>
<tr class="separator:aa550699d919d4a47bd057f0b652c23cf"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
Private Member Functions</h2></td></tr>
<tr class="memitem:a8c8f4742f0c4bd922f2ae8c017fc384a"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSeq__gap.html#a8c8f4742f0c4bd922f2ae8c017fc384a">CSeq_gap</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__gap.html">CSeq_gap</a> &amp;<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
<tr class="separator:a8c8f4742f0c4bd922f2ae8c017fc384a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af5fae4387e5edfcc8065021aa68a200e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCSeq__gap.html">CSeq_gap</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSeq__gap.html#af5fae4387e5edfcc8065021aa68a200e">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__gap.html">CSeq_gap</a> &amp;<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
<tr class="separator:af5fae4387e5edfcc8065021aa68a200e"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_static_attribs_classCSerialObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_attribs_classCSerialObject')"><img src="closed.png" alt="-"/>&#160;Static Public Attributes inherited from <a class="el" href="classCSerialObject.html">CSerialObject</a></td></tr>
<tr class="memitem:gacf732f6a9f64037d0cad32a72f7522ea inherit pub_static_attribs_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#gacf732f6a9f64037d0cad32a72f7522ea">ms_UnassignedStr</a> = &quot;&lt;*unassigned*&gt;&quot;</td></tr>
<tr class="separator:gacf732f6a9f64037d0cad32a72f7522ea inherit pub_static_attribs_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga6baaf827f8d2e4f98be84d91d511a716 inherit pub_static_attribs_classCSerialObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__GenClassSupport.html#ga6baaf827f8d2e4f98be84d91d511a716">ms_UnassignedByte</a> = char(0xcd)</td></tr>
<tr class="separator:ga6baaf827f8d2e4f98be84d91d511a716 inherit pub_static_attribs_classCSerialObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_static_attribs_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_attribs_classCObject')"><img src="closed.png" alt="-"/>&#160;Static Public Attributes inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
<tr class="memitem:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">eCounterBitsCanBeDeleted</a> = 1 &lt;&lt; 0</td></tr>
<tr class="memdesc:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define possible object states. <a href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">More...</a><br /></td></tr>
<tr class="separator:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">eCounterBitsInPlainHeap</a> = 1 &lt;&lt; 1</td></tr>
<tr class="memdesc:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Heap signature was found. <a href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">More...</a><br /></td></tr>
<tr class="separator:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">eCounterBitsPlaceMask</a></td></tr>
<tr class="memdesc:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mask for 'in heap' state flags. <a href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">More...</a><br /></td></tr>
<tr class="separator:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">eCounterStep</a> = 1 &lt;&lt; 2</td></tr>
<tr class="memdesc:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Skip over the "in heap" bits. <a href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">More...</a><br /></td></tr>
<tr class="separator:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">eCounterValid</a> = <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>(1) &lt;&lt; (sizeof(<a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>) * 8 - 2)</td></tr>
<tr class="memdesc:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimal value for valid objects (reference counter is zero) Must be a single bit value. <a href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">More...</a><br /></td></tr>
<tr class="separator:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">eCounterStateMask</a></td></tr>
<tr class="memdesc:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Valid object, and object in heap. <a href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">More...</a><br /></td></tr>
<tr class="separator:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classCObject')"><img src="closed.png" alt="-"/>&#160;Protected Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
<tr class="memitem:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">DeleteThis</a> (void)</td></tr>
<tr class="memdesc:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual method "deleting" this object. <a href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">More...</a><br /></td></tr>
<tr class="separator:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock">
<p class="definition">Definition at line <a class="el" href="Seq__gap_8hpp_source.html#l00059">59</a> of file <a class="el" href="Seq__gap_8hpp_source.html">Seq_gap.hpp</a>.</p>
</div><h2 class="groupheader">Member Typedef Documentation</h2>
<a id="a9e4daeba525ce3dade03009f4684638c"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a9e4daeba525ce3dade03009f4684638c">&#9670;&nbsp;</a></span>TGapTypeMap</h2>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">typedef <a class="el" href="classCStaticArrayMap.html">CStaticArrayMap</a>&lt;<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *, <a class="el" href="structCSeq__gap_1_1SGapTypeInfo.html">SGapTypeInfo</a>, <a class="el" href="group__String.html#gaf4b25c871f888cfb5715583a380c699a">PCase_CStr</a>&gt; <a class="el" href="classCSeq__gap.html#a9e4daeba525ce3dade03009f4684638c">CSeq_gap::TGapTypeMap</a></td>
</tr>
</table>
</div><div class="memdoc">
<p>Map a gap-type string to its information Note that PCase_CStr, which means direct lookup is NOT insensitive to case, etc. </p>
<p class="definition">Definition at line <a class="el" href="Seq__gap_8hpp_source.html#l00093">93</a> of file <a class="el" href="Seq__gap_8hpp_source.html">Seq_gap.hpp</a>.</p>
</div>
</div>
<a id="aa550699d919d4a47bd057f0b652c23cf"></a>
<h2 class="memtitle"><span class="permalink"><a href="#aa550699d919d4a47bd057f0b652c23cf">&#9670;&nbsp;</a></span>Tparent</h2>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">typedef <a class="el" href="classCSeq__gap__Base.html">CSeq_gap_Base</a> <a class="el" href="classCSeq__gap.html#aa550699d919d4a47bd057f0b652c23cf">CSeq_gap::Tparent</a></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">private</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p class="definition">Definition at line <a class="el" href="Seq__gap_8hpp_source.html#l00061">61</a> of file <a class="el" href="Seq__gap_8hpp_source.html">Seq_gap.hpp</a>.</p>
</div>
</div>
<h2 class="groupheader">Member Enumeration Documentation</h2>
<a id="a6b17aad30405fa8a05d950f3570eb4ab"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a6b17aad30405fa8a05d950f3570eb4ab">&#9670;&nbsp;</a></span>ELinkEvid</h2>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">enum <a class="el" href="classCSeq__gap.html#a6b17aad30405fa8a05d950f3570eb4ab">CSeq_gap::ELinkEvid</a></td>
</tr>
</table>
</div><div class="memdoc">
<p>indicates which linkage-evidences a given gap-type can accept, if any </p>
<table class="fieldtable">
<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="a6b17aad30405fa8a05d950f3570eb4aba006b3eaaf5a3d6828d24f199e5ead8ed"></a>eLinkEvid_UnspecifiedOnly&#160;</td><td class="fielddoc"><p>only the "unspecified" linkage-evidence is allowed </p>
</td></tr>
<tr><td class="fieldname"><a id="a6b17aad30405fa8a05d950f3570eb4aba7f964bf371362ef6792838bbe602a991"></a>eLinkEvid_Forbidden&#160;</td><td class="fielddoc"><p>no linkage-evidence is allowed </p>
</td></tr>
<tr><td class="fieldname"><a id="a6b17aad30405fa8a05d950f3570eb4aba8fde49184ab65d10d5a042db76541f03"></a>eLinkEvid_Required&#160;</td><td class="fielddoc"><p>any linkage-evidence is allowed, and at least one is required </p>
</td></tr>
</table>
<p class="definition">Definition at line <a class="el" href="Seq__gap_8hpp_source.html#l00075">75</a> of file <a class="el" href="Seq__gap_8hpp_source.html">Seq_gap.hpp</a>.</p>
</div>
</div>
<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
<a id="a60dadb6f607edd1f811916bc17f4a360"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a60dadb6f607edd1f811916bc17f4a360">&#9670;&nbsp;</a></span>CSeq_gap() <span class="overload">[1/2]</span></h2>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">CSeq_gap::CSeq_gap </td>
<td>(</td>
<td class="paramtype">void&#160;</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p class="definition">Definition at line <a class="el" href="Seq__gap_8hpp_source.html#l00118">118</a> of file <a class="el" href="Seq__gap_8hpp_source.html">Seq_gap.hpp</a>.</p>
</div>
</div>
<a id="af9370598077ba498347e57bf67b27082"></a>
<h2 class="memtitle"><span class="permalink"><a href="#af9370598077ba498347e57bf67b27082">&#9670;&nbsp;</a></span>~CSeq_gap()</h2>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">CSeq_gap::~CSeq_gap </td>
<td>(</td>
<td class="paramtype">void&#160;</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p class="definition">Definition at line <a class="el" href="Seq__gap_8cpp_source.html#l00074">74</a> of file <a class="el" href="Seq__gap_8cpp_source.html">Seq_gap.cpp</a>.</p>
</div>
</div>
<a id="a8c8f4742f0c4bd922f2ae8c017fc384a"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a8c8f4742f0c4bd922f2ae8c017fc384a">&#9670;&nbsp;</a></span>CSeq_gap() <span class="overload">[2/2]</span></h2>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">CSeq_gap::CSeq_gap </td>
<td>(</td>
<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__gap.html">CSeq_gap</a> &amp;&#160;</td>
<td class="paramname"><em>value</em></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">private</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
</div>
</div>
<h2 class="groupheader">Member Function Documentation</h2>
<a id="a19a16459dae86470b01ca7b84b318648"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a19a16459dae86470b01ca7b84b318648">&#9670;&nbsp;</a></span>AddLinkageEvidence()</h2>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> CSeq_gap::AddLinkageEvidence </td>
<td>(</td>
<td class="paramtype"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga0dcbd347f93db819413dd15ec777b63a">CLinkage_evidence::TType</a>&#160;</td>
<td class="paramname"><em>evidence_type</em></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p class="definition">Definition at line <a class="el" href="Seq__gap_8cpp_source.html#l00123">123</a> of file <a class="el" href="Seq__gap_8cpp_source.html">Seq_gap.cpp</a>.</p>
<p class="reference">References <a class="el" href="Seq__gap___8hpp_source.html#l00108">CSeq_gap_Base::eLinkage_linked</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00096">CSeq_gap_Base::eType_repeat</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00098">CSeq_gap_Base::eType_scaffold</a>, <a class="el" href="Linkage__evidence___8hpp_source.html#l00089">CLinkage_evidence_Base::eType_unspecified</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00329">CSeq_gap_Base::GetLinkage()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00282">CSeq_gap_Base::GetType()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00310">CSeq_gap_Base::IsSetLinkage()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00357">CSeq_gap_Base::IsSetLinkage_evidence()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00263">CSeq_gap_Base::IsSetType()</a>, <a class="el" href="ncbimisc_8hpp_source.html#l00822">NON_CONST_ITERATE</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00345">CSeq_gap_Base::SetLinkage()</a>, and <a class="el" href="Seq__gap___8hpp_source.html#l00375">CSeq_gap_Base::SetLinkage_evidence()</a>.</p>
<p class="reference">Referenced by <a class="el" href="seq__entry__edit_8cpp_source.html#l02040">AddLinkageEvidence()</a>, <a class="el" href="Seq__gap_8cpp_source.html#l00079">ChangeType()</a>, <a class="el" href="Seq__gap_8cpp_source.html#l00114">SetLinkageTypeLinkedRepeat()</a>, and <a class="el" href="Seq__gap_8cpp_source.html#l00105">SetLinkageTypeScaffold()</a>.</p>
</div>
</div>
<a id="a510f2927ecf33c31453f18af33f4a873"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a510f2927ecf33c31453f18af33f4a873">&#9670;&nbsp;</a></span>ChangeType()</h2>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void CSeq_gap::ChangeType </td>
<td>(</td>
<td class="paramtype"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga0f4ba027c58ba40c94b375ebbf2b9e39">TType</a>&#160;</td>
<td class="paramname"><em>linkage_type</em></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p class="definition">Definition at line <a class="el" href="Seq__gap_8cpp_source.html#l00079">79</a> of file <a class="el" href="Seq__gap_8cpp_source.html">Seq_gap.cpp</a>.</p>
<p class="reference">References <a class="el" href="Seq__gap_8cpp_source.html#l00123">AddLinkageEvidence()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00108">CSeq_gap_Base::eLinkage_linked</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00107">CSeq_gap_Base::eLinkage_unlinked</a>, <a class="el" href="ctre-unicode_8hpp_source.html#l00525">ctll::empty()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00096">CSeq_gap_Base::eType_repeat</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00098">CSeq_gap_Base::eType_scaffold</a>, <a class="el" href="Linkage__evidence___8hpp_source.html#l00089">CLinkage_evidence_Base::eType_unspecified</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00329">CSeq_gap_Base::GetLinkage()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00369">CSeq_gap_Base::GetLinkage_evidence()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00310">CSeq_gap_Base::IsSetLinkage()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00357">CSeq_gap_Base::IsSetLinkage_evidence()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00322">CSeq_gap_Base::ResetLinkage()</a>, <a class="el" href="Seq__gap___8cpp_source.html#l00080">CSeq_gap_Base::ResetLinkage_evidence()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00345">CSeq_gap_Base::SetLinkage()</a>, and <a class="el" href="Seq__gap___8hpp_source.html#l00298">CSeq_gap_Base::SetType()</a>.</p>
<p class="reference">Referenced by <a class="el" href="seq__entry__edit_8cpp_source.html#l01990">SetLinkageType()</a>.</p>
</div>
</div>
<a id="a643042ca82ab5078adeaf29757ef4560"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a643042ca82ab5078adeaf29757ef4560">&#9670;&nbsp;</a></span>GetNameToGapTypeInfoMap()</h2>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__gap.html#a9e4daeba525ce3dade03009f4684638c">CSeq_gap::TGapTypeMap</a> &amp; CSeq_gap::GetNameToGapTypeInfoMap </td>
<td>(</td>
<td class="paramtype">void&#160;</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">static</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>This is for if the user needs to get the gap-type string to <a class="el" href="structCSeq__gap_1_1SGapTypeInfo.html" title="Holds information about a given gap-type string.">SGapTypeInfo</a> info directly (For example, to iterate through all possible types). </p>
<p class="definition">Definition at line <a class="el" href="Seq__gap_8cpp_source.html#l00176">176</a> of file <a class="el" href="Seq__gap_8cpp_source.html">Seq_gap.cpp</a>.</p>
<p class="reference">References <a class="el" href="static__set_8hpp_source.html#l00888">DEFINE_STATIC_ARRAY_MAP</a>, <a class="el" href="Seq__gap_8hpp_source.html#l00079">eLinkEvid_Forbidden</a>, <a class="el" href="Seq__gap_8hpp_source.html#l00081">eLinkEvid_Required</a>, <a class="el" href="Seq__gap_8hpp_source.html#l00077">eLinkEvid_UnspecifiedOnly</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00094">CSeq_gap_Base::eType_centromere</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00099">CSeq_gap_Base::eType_contamination</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00097">CSeq_gap_Base::eType_contig</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00093">CSeq_gap_Base::eType_heterochromatin</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00096">CSeq_gap_Base::eType_repeat</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00098">CSeq_gap_Base::eType_scaffold</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00092">CSeq_gap_Base::eType_short_arm</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00095">CSeq_gap_Base::eType_telomere</a>, and <a class="el" href="Seq__gap___8hpp_source.html#l00089">CSeq_gap_Base::eType_unknown</a>.</p>
<p class="reference">Referenced by <a class="el" href="unit__test__fasta__reader__old_8cpp_source.html#l00966">BOOST_AUTO_TEST_CASE()</a>, <a class="el" href="Seq__gap_8cpp_source.html#l00158">NameToGapTypeInfo()</a>, and <a class="el" href="fasta_8cpp_source.html#l01094">CFastaReader::ParseGapLine()</a>.</p>
</div>
</div>
<a id="a89055edcf2c65bcd38e46e25500fc018"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a89055edcf2c65bcd38e46e25500fc018">&#9670;&nbsp;</a></span>NameToGapTypeInfo()</h2>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="structCSeq__gap_1_1SGapTypeInfo.html">CSeq_gap::SGapTypeInfo</a> * CSeq_gap::NameToGapTypeInfo </td>
<td>(</td>
<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCTempString.html">CTempString</a> &amp;&#160;</td>
<td class="paramname"><em>sName</em></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">static</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>From a gap-type string, get the <a class="el" href="structCSeq__gap_1_1SGapTypeInfo.html" title="Holds information about a given gap-type string.">SGapTypeInfo</a>, insensitive to case, etc. </p>
<p>This is NOT quite the same as calling find on the TGapTypeMap.</p>
<dl class="section return"><dt>Returns</dt><dd>NULL if not found </dd></dl>
<p class="definition">Definition at line <a class="el" href="Seq__gap_8cpp_source.html#l00158">158</a> of file <a class="el" href="Seq__gap_8cpp_source.html">Seq_gap.cpp</a>.</p>
<p class="reference">References <a class="el" href="static__set_8hpp_source.html#l00647">CStaticArraySearchBase&lt; KeyValueGetter, KeyCompare &gt;::end()</a>, <a class="el" href="static__set_8hpp_source.html#l00680">CStaticArraySearchBase&lt; KeyValueGetter, KeyCompare &gt;::find()</a>, <a class="el" href="Seq__gap_8cpp_source.html#l00176">GetNameToGapTypeInfoMap()</a>, and <a class="el" href="ctools_2ctransition_2ncbistd_8hpp_source.html#l00225">NULL</a>.</p>
<p class="reference">Referenced by <a class="el" href="feature__table__reader_8cpp_source.html#l01653">CFeatureTableReader::MakeGap()</a>, and <a class="el" href="fasta_8cpp_source.html#l01094">CFastaReader::ParseGapLine()</a>.</p>
</div>
</div>
<a id="af5fae4387e5edfcc8065021aa68a200e"></a>
<h2 class="memtitle"><span class="permalink"><a href="#af5fae4387e5edfcc8065021aa68a200e">&#9670;&nbsp;</a></span>operator=()</h2>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classCSeq__gap.html">CSeq_gap</a>&amp; CSeq_gap::operator= </td>
<td>(</td>
<td class="paramtype"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__gap.html">CSeq_gap</a> &amp;&#160;</td>
<td class="paramname"><em>value</em></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">private</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
</div>
</div>
<a id="a769f02fa234383bbddfa1cd39dc0377c"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a769f02fa234383bbddfa1cd39dc0377c">&#9670;&nbsp;</a></span>SetLinkageTypeLinkedRepeat()</h2>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void CSeq_gap::SetLinkageTypeLinkedRepeat </td>
<td>(</td>
<td class="paramtype"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga0dcbd347f93db819413dd15ec777b63a">CLinkage_evidence::TType</a>&#160;</td>
<td class="paramname"><em>evidence_type</em></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p class="definition">Definition at line <a class="el" href="Seq__gap_8cpp_source.html#l00114">114</a> of file <a class="el" href="Seq__gap_8cpp_source.html">Seq_gap.cpp</a>.</p>
<p class="reference">References <a class="el" href="Seq__gap_8cpp_source.html#l00123">AddLinkageEvidence()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00108">CSeq_gap_Base::eLinkage_linked</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00096">CSeq_gap_Base::eType_repeat</a>, <a class="el" href="Seq__gap___8cpp_source.html#l00080">CSeq_gap_Base::ResetLinkage_evidence()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00345">CSeq_gap_Base::SetLinkage()</a>, and <a class="el" href="Seq__gap___8hpp_source.html#l00298">CSeq_gap_Base::SetType()</a>.</p>
<p class="reference">Referenced by <a class="el" href="seq__entry__edit_8cpp_source.html#l02021">SetLinkageTypeLinkedRepeat()</a>.</p>
</div>
</div>
<a id="aacb423f6f002072594d8b032b77c865f"></a>
<h2 class="memtitle"><span class="permalink"><a href="#aacb423f6f002072594d8b032b77c865f">&#9670;&nbsp;</a></span>SetLinkageTypeScaffold()</h2>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void CSeq_gap::SetLinkageTypeScaffold </td>
<td>(</td>
<td class="paramtype"><a class="el" href="group__dataspec__NCBI__Sequence.html#ga0dcbd347f93db819413dd15ec777b63a">CLinkage_evidence::TType</a>&#160;</td>
<td class="paramname"><em>evidence_type</em></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p class="definition">Definition at line <a class="el" href="Seq__gap_8cpp_source.html#l00105">105</a> of file <a class="el" href="Seq__gap_8cpp_source.html">Seq_gap.cpp</a>.</p>
<p class="reference">References <a class="el" href="Seq__gap_8cpp_source.html#l00123">AddLinkageEvidence()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00108">CSeq_gap_Base::eLinkage_linked</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00098">CSeq_gap_Base::eType_scaffold</a>, <a class="el" href="Seq__gap___8cpp_source.html#l00080">CSeq_gap_Base::ResetLinkage_evidence()</a>, <a class="el" href="Seq__gap___8hpp_source.html#l00345">CSeq_gap_Base::SetLinkage()</a>, and <a class="el" href="Seq__gap___8hpp_source.html#l00298">CSeq_gap_Base::SetType()</a>.</p>
<p class="reference">Referenced by <a class="el" href="seq__entry__edit_8cpp_source.html#l02009">SetLinkageTypeScaffold()</a>.</p>
</div>
</div>
<hr/>The documentation for this class was generated from the following files:<ul>
<li>include/objects/seq/<a class="el" href="Seq__gap_8hpp_source.html">Seq_gap.hpp</a></li>
<li>src/objects/seq/<a class="el" href="Seq__gap_8cpp_source.html">Seq_gap.cpp</a></li>
</ul>
</div><!-- contents -->
<!-- start footer part -->
<hr class="footer"/><address class="footer"><small>
Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.0
</small></address>
<address style="align: right;"><small>Modified on Fri Sep 20 14:57:57 2024 by modify_doxy.py rev. 669887</small></address>
</body>
</html>