349 lines
68 KiB
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349 lines
68 KiB
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<title>NCBI C++ ToolKit: CLocalBlast Class Reference</title>
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<div id="projectname">NCBI C++ ToolKit
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<div class="summary">
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<a href="#pub-methods">Public Member Functions</a> |
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<a href="#pri-attribs">Private Attributes</a> |
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<a href="#friends">Friends</a> |
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<a href="classCLocalBlast-members.html">List of all members</a> </div>
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<div class="headertitle">
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<div class="title">CLocalBlast Class Reference<div class="ingroups"><a class="el" href="group__ALGO.html">ALGORITHMS</a> » <a class="el" href="group__AlgoBlast.html">BLAST (Basic Local Alignment Search Tool)</a></div></div> </div>
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</div><!--header-->
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<div class="contents">
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<p>
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<a class="el" href = "https://www.ncbi.nlm.nih.gov/toolkitbookgh/?term=CLocalBlast">Search Toolkit Book for <i>CLocalBlast</i></a>
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</p>
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<p>Class to perform a BLAST search on local BLAST databases Note that PHI-BLAST can be run using this class also, one only need to configure it as a regular blastp or blastn search and set the pattern in the <a class="el" href="classCBlastOptionsHandle.html" title="Handle to the options to the BLAST algorithm.">CBlastOptionsHandle</a> object.
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<a href="classCLocalBlast.html#details">More...</a></p>
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<p><code>#include <<a class="el" href="local__blast_8hpp_source.html">algo/blast/api/local_blast.hpp</a>></code></p>
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<div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
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<img id="dynsection-0-trigger" src="closed.png" alt="+"/> Inheritance diagram for CLocalBlast:</div>
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<div id="dynsection-0-summary" class="dynsummary" style="display:block;">
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<div id="dynsection-0-content" class="dyncontent" style="display:none;">
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<div class="center"><img src="img__inherit__graph/classCLocalBlast__inherit__graph.png" border="0" usemap="#aCLocalBlast_inherit__map" alt="Inheritance graph"/></div>
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<map name="aCLocalBlast_inherit__map" id="aCLocalBlast_inherit__map">
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<center><span class="legend">[<a href="graph_legend.html">legend</a>]</span></center></div>
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<div id="dynsection-1" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
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<img id="dynsection-1-trigger" src="closed.png" alt="+"/> Collaboration diagram for CLocalBlast:</div>
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<div id="dynsection-1-summary" class="dynsummary" style="display:block;">
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</div>
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<div id="dynsection-1-content" class="dyncontent" style="display:none;">
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<div class="center"><img src="img__coll__graph/classCLocalBlast__coll__graph.png" border="0" usemap="#aCLocalBlast_coll__map" alt="Collaboration graph"/></div>
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<table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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Public Member Functions</h2></td></tr>
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<tr class="memitem:ga282a492bec2b89bd33f2fe89dd90693d"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga282a492bec2b89bd33f2fe89dd90693d">CLocalBlast</a> (<a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classIQueryFactory.html">IQueryFactory</a> > query_factory, <a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCBlastOptionsHandle.html">CBlastOptionsHandle</a> > opts_handle, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSearchDatabase.html">CSearchDatabase</a> &dbinfo)</td></tr>
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<tr class="memdesc:ga282a492bec2b89bd33f2fe89dd90693d"><td class="mdescLeft"> </td><td class="mdescRight">Constructor with database description. <a href="group__AlgoBlast.html#ga282a492bec2b89bd33f2fe89dd90693d">More...</a><br /></td></tr>
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<tr class="separator:ga282a492bec2b89bd33f2fe89dd90693d"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga3afb45ff622fd9b1db0f21869e1befd7"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3afb45ff622fd9b1db0f21869e1befd7">CLocalBlast</a> (<a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classIQueryFactory.html">IQueryFactory</a> > query_factory, <a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCBlastOptionsHandle.html">CBlastOptionsHandle</a> > opts_handle, <a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCLocalDbAdapter.html">CLocalDbAdapter</a> > db)</td></tr>
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<tr class="memdesc:ga3afb45ff622fd9b1db0f21869e1befd7"><td class="mdescLeft"> </td><td class="mdescRight">Constructor with subject adapter (. <a href="group__AlgoBlast.html#ga3afb45ff622fd9b1db0f21869e1befd7">More...</a><br /></td></tr>
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<tr class="separator:ga3afb45ff622fd9b1db0f21869e1befd7"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga5e978ffd5023999c12dce8b2ce835353"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5e978ffd5023999c12dce8b2ce835353">CLocalBlast</a> (<a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classIQueryFactory.html">IQueryFactory</a> > query_factory, <a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCBlastOptionsHandle.html">CBlastOptionsHandle</a> > opts_handle, <a class="el" href="structBlastSeqSrc.html">BlastSeqSrc</a> *seqsrc, <a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classIBlastSeqInfoSrc.html">IBlastSeqInfoSrc</a> > seqInfoSrc)</td></tr>
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<tr class="memdesc:ga5e978ffd5023999c12dce8b2ce835353"><td class="mdescLeft"> </td><td class="mdescRight">Constructor with database description. <a href="group__AlgoBlast.html#ga5e978ffd5023999c12dce8b2ce835353">More...</a><br /></td></tr>
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<tr class="separator:ga5e978ffd5023999c12dce8b2ce835353"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga501b622f3def8267c073613e8ba758a4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCSearchResultSet.html">CSearchResultSet</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga501b622f3def8267c073613e8ba758a4">Run</a> ()</td></tr>
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<tr class="memdesc:ga501b622f3def8267c073613e8ba758a4"><td class="mdescLeft"> </td><td class="mdescRight">Executes the search. <a href="group__AlgoBlast.html#ga501b622f3def8267c073613e8ba758a4">More...</a><br /></td></tr>
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<tr class="separator:ga501b622f3def8267c073613e8ba758a4"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga5ec3f22255691a5be82fcf9050c116c5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="blast__def_8h.html#a3d0d4e6f739bff33d3cd532f63fafb18">TInterruptFnPtr</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5ec3f22255691a5be82fcf9050c116c5">SetInterruptCallback</a> (<a class="el" href="blast__def_8h.html#a3d0d4e6f739bff33d3cd532f63fafb18">TInterruptFnPtr</a> fnptr, void *user_data=<a class="el" href="group__CToolsBridge.html#ga070d2ce7b6bb7e5c05602aa8c308d0c4">NULL</a>)</td></tr>
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<tr class="memdesc:ga5ec3f22255691a5be82fcf9050c116c5"><td class="mdescLeft"> </td><td class="mdescRight">Set a function callback to be invoked by the CORE of BLAST to allow interrupting a BLAST search in progress. <a href="group__AlgoBlast.html#ga5ec3f22255691a5be82fcf9050c116c5">More...</a><br /></td></tr>
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<tr class="separator:ga5ec3f22255691a5be82fcf9050c116c5"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga6a5de8a50d31ac32c3d8550b829d8425"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classTSearchMessages.html">TSearchMessages</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6a5de8a50d31ac32c3d8550b829d8425">GetSearchMessages</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga6a5de8a50d31ac32c3d8550b829d8425"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve any error/warning messages that occurred during the search. <a href="group__AlgoBlast.html#ga6a5de8a50d31ac32c3d8550b829d8425">More...</a><br /></td></tr>
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<tr class="separator:ga6a5de8a50d31ac32c3d8550b829d8425"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gadd75dc67366b0f9e407d49f672f185b1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Portability.html#ga51b761affa74cf9aa661229a74bc91f7">Int4</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gadd75dc67366b0f9e407d49f672f185b1">GetNumExtensions</a> ()</td></tr>
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<tr class="memdesc:gadd75dc67366b0f9e407d49f672f185b1"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve the number of extensions performed during the search. <a href="group__AlgoBlast.html#gadd75dc67366b0f9e407d49f672f185b1">More...</a><br /></td></tr>
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<tr class="separator:gadd75dc67366b0f9e407d49f672f185b1"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga6118a57d4d57827038178dc4780597a5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structBlastDiagnostics.html">BlastDiagnostics</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6118a57d4d57827038178dc4780597a5">GetDiagnostics</a> ()</td></tr>
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<tr class="memdesc:ga6118a57d4d57827038178dc4780597a5"><td class="mdescLeft"> </td><td class="mdescRight">Get the diagnostics structure (deep copy, needs to be deleted by caller) <a href="group__AlgoBlast.html#ga6118a57d4d57827038178dc4780597a5">More...</a><br /></td></tr>
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<tr class="separator:ga6118a57d4d57827038178dc4780597a5"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga501f82cfe76e09e0a4e5df94d1014712"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga501f82cfe76e09e0a4e5df94d1014712">SetBatchNumber</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> batch_num)</td></tr>
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<tr class="separator:ga501f82cfe76e09e0a4e5df94d1014712"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCObject')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
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<tr class="memitem:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">CObject</a> (void)</td></tr>
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<tr class="memdesc:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">More...</a><br /></td></tr>
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<tr class="separator:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">CObject</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src)</td></tr>
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<tr class="memdesc:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">More...</a><br /></td></tr>
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<tr class="separator:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">~CObject</a> (void)</td></tr>
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<tr class="memdesc:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">More...</a><br /></td></tr>
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<tr class="separator:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCObject.html">CObject</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src) <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
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<tr class="memdesc:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">More...</a><br /></td></tr>
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<tr class="separator:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">CanBeDeleted</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
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<tr class="memdesc:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object can be deleted. <a href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">More...</a><br /></td></tr>
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<tr class="separator:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">IsAllocatedInPool</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is allocated in memory pool (not system heap) <a href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">More...</a><br /></td></tr>
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||
<tr class="separator:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">Referenced</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced. <a href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">More...</a><br /></td></tr>
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||
<tr class="separator:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">ReferencedOnlyOnce</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced only once. <a href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">More...</a><br /></td></tr>
|
||
<tr class="separator:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">AddReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Add reference to object. <a href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">RemoveReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference to object. <a href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">More...</a><br /></td></tr>
|
||
<tr class="separator:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">ReleaseReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference without deleting object. <a href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">DoNotDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as not allocated in heap – do not delete this object. <a href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">More...</a><br /></td></tr>
|
||
<tr class="separator:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">DoDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as allocated in heap – object can be deleted. <a href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator for memory allocation. <a href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">operator new[]</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new[] operator for 'array' memory allocation. <a href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">More...</a><br /></td></tr>
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||
<tr class="separator:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">operator delete</a> (void *ptr)</td></tr>
|
||
<tr class="memdesc:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator for memory deallocation. <a href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">More...</a><br /></td></tr>
|
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<tr class="separator:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">operator delete[]</a> (void *ptr)</td></tr>
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||
<tr class="memdesc:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete[] operator for memory deallocation. <a href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">More...</a><br /></td></tr>
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||
<tr class="separator:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, void *place)</td></tr>
|
||
<tr class="memdesc:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator. <a href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">More...</a><br /></td></tr>
|
||
<tr class="separator:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">operator delete</a> (void *ptr, void *place)</td></tr>
|
||
<tr class="memdesc:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">More...</a><br /></td></tr>
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||
<tr class="separator:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
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||
<tr class="memdesc:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator using memory pool. <a href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">More...</a><br /></td></tr>
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<tr class="separator:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">operator delete</a> (void *ptr, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
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||
<tr class="memdesc:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">More...</a><br /></td></tr>
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<tr class="separator:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga66707761bd1460db43ee9018220deb75 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga66707761bd1460db43ee9018220deb75">DebugDump</a> (<a class="el" href="classCDebugDumpContext.html">CDebugDumpContext</a> ddc, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="memdesc:ga66707761bd1460db43ee9018220deb75 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define method for dumping debug information. <a href="group__Object.html#ga66707761bd1460db43ee9018220deb75">More...</a><br /></td></tr>
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<tr class="separator:ga66707761bd1460db43ee9018220deb75 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
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<tr class="memitem:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ae8723856215191ef748f19ff73e8ba4e">CDebugDumpable</a> (void)</td></tr>
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<tr class="separator:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#acdeaaedfabb4cc4a64108dbb854f4b51">~CDebugDumpable</a> (void)</td></tr>
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<tr class="separator:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a4ff9ec248a38f17b7d8deb3f78318a37">DebugDumpText</a> (ostream &<a class="el" href="events__unit__test_8cpp.html#ac3c18c078fe416626b6c1dcc3e780245">out</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#aa0101dfdc0ae0cbd0cb1609c96f96229">DebugDumpFormat</a> (<a class="el" href="classCDebugDumpFormatter.html">CDebugDumpFormatter</a> &ddf, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a19047c92521e5f3ad2a14bab26a49b51">DumpToConsole</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="separator:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_methods_classCThreadable"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCThreadable')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCThreadable.html">CThreadable</a></td></tr>
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<tr class="memitem:gad77085cb372fad0fd5d0d77f3a4988ca inherit pub_methods_classCThreadable"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad77085cb372fad0fd5d0d77f3a4988ca">CThreadable</a> (void)</td></tr>
|
||
<tr class="memdesc:gad77085cb372fad0fd5d0d77f3a4988ca inherit pub_methods_classCThreadable"><td class="mdescLeft"> </td><td class="mdescRight">Default ctor. <a href="group__AlgoBlast.html#gad77085cb372fad0fd5d0d77f3a4988ca">More...</a><br /></td></tr>
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<tr class="separator:gad77085cb372fad0fd5d0d77f3a4988ca inherit pub_methods_classCThreadable"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga28c1c6206982acaa38034b5fec98b390 inherit pub_methods_classCThreadable"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga28c1c6206982acaa38034b5fec98b390">~CThreadable</a> (void)</td></tr>
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||
<tr class="memdesc:ga28c1c6206982acaa38034b5fec98b390 inherit pub_methods_classCThreadable"><td class="mdescLeft"> </td><td class="mdescRight">Our virtual destructor. <a href="group__AlgoBlast.html#ga28c1c6206982acaa38034b5fec98b390">More...</a><br /></td></tr>
|
||
<tr class="separator:ga28c1c6206982acaa38034b5fec98b390 inherit pub_methods_classCThreadable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga157e32778ecc9abd11744d21652a806a inherit pub_methods_classCThreadable"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga157e32778ecc9abd11744d21652a806a">SetNumberOfThreads</a> (size_t nthreads)</td></tr>
|
||
<tr class="memdesc:ga157e32778ecc9abd11744d21652a806a inherit pub_methods_classCThreadable"><td class="mdescLeft"> </td><td class="mdescRight">Mutator for the number of threads. <a href="group__AlgoBlast.html#ga157e32778ecc9abd11744d21652a806a">More...</a><br /></td></tr>
|
||
<tr class="separator:ga157e32778ecc9abd11744d21652a806a inherit pub_methods_classCThreadable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga0e9cae11814a1b2a8792f7c3f0eebd04 inherit pub_methods_classCThreadable"><td class="memItemLeft" align="right" valign="top">size_t </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga0e9cae11814a1b2a8792f7c3f0eebd04">GetNumberOfThreads</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga0e9cae11814a1b2a8792f7c3f0eebd04 inherit pub_methods_classCThreadable"><td class="mdescLeft"> </td><td class="mdescRight">Accessor for the number of threads to use. <a href="group__AlgoBlast.html#ga0e9cae11814a1b2a8792f7c3f0eebd04">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0e9cae11814a1b2a8792f7c3f0eebd04 inherit pub_methods_classCThreadable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga4db2905097228e23e6c7511cc236befa inherit pub_methods_classCThreadable"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga4db2905097228e23e6c7511cc236befa">IsMultiThreaded</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga4db2905097228e23e6c7511cc236befa inherit pub_methods_classCThreadable"><td class="mdescLeft"> </td><td class="mdescRight">Returns true if more than 1 thread is specified. <a href="group__AlgoBlast.html#ga4db2905097228e23e6c7511cc236befa">More...</a><br /></td></tr>
|
||
<tr class="separator:ga4db2905097228e23e6c7511cc236befa inherit pub_methods_classCThreadable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
|
||
Private Attributes</h2></td></tr>
|
||
<tr class="memitem:gae6791e79e2ac72ef2013f5d04bc5cb7b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classIQueryFactory.html">IQueryFactory</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae6791e79e2ac72ef2013f5d04bc5cb7b">m_QueryFactory</a></td></tr>
|
||
<tr class="memdesc:gae6791e79e2ac72ef2013f5d04bc5cb7b"><td class="mdescLeft"> </td><td class="mdescRight">Query factory from which to obtain the query sequence data. <a href="group__AlgoBlast.html#gae6791e79e2ac72ef2013f5d04bc5cb7b">More...</a><br /></td></tr>
|
||
<tr class="separator:gae6791e79e2ac72ef2013f5d04bc5cb7b"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga54b8a4bec9702b28bd3f9e3ce1d0bd17"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCBlastOptions.html">CBlastOptions</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga54b8a4bec9702b28bd3f9e3ce1d0bd17">m_Opts</a></td></tr>
|
||
<tr class="memdesc:ga54b8a4bec9702b28bd3f9e3ce1d0bd17"><td class="mdescLeft"> </td><td class="mdescRight">Options to use. <a href="group__AlgoBlast.html#ga54b8a4bec9702b28bd3f9e3ce1d0bd17">More...</a><br /></td></tr>
|
||
<tr class="separator:ga54b8a4bec9702b28bd3f9e3ce1d0bd17"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga17b444e73d104d3fadf4b65bb1eba579"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="structSInternalData.html">SInternalData</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga17b444e73d104d3fadf4b65bb1eba579">m_InternalData</a></td></tr>
|
||
<tr class="memdesc:ga17b444e73d104d3fadf4b65bb1eba579"><td class="mdescLeft"> </td><td class="mdescRight">Internal core data structures which are used in the preliminary and traceback stages of the search. <a href="group__AlgoBlast.html#ga17b444e73d104d3fadf4b65bb1eba579">More...</a><br /></td></tr>
|
||
<tr class="separator:ga17b444e73d104d3fadf4b65bb1eba579"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga1f0ef6770216cc65005412abfcf6cb4a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCBlastPrelimSearch.html">CBlastPrelimSearch</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga1f0ef6770216cc65005412abfcf6cb4a">m_PrelimSearch</a></td></tr>
|
||
<tr class="memdesc:ga1f0ef6770216cc65005412abfcf6cb4a"><td class="mdescLeft"> </td><td class="mdescRight">Object which runs the preliminary stage of the search. <a href="group__AlgoBlast.html#ga1f0ef6770216cc65005412abfcf6cb4a">More...</a><br /></td></tr>
|
||
<tr class="separator:ga1f0ef6770216cc65005412abfcf6cb4a"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga8ff6746b35448604a2518c8c676b96be"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCBlastTracebackSearch.html">CBlastTracebackSearch</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8ff6746b35448604a2518c8c676b96be">m_TbackSearch</a></td></tr>
|
||
<tr class="memdesc:ga8ff6746b35448604a2518c8c676b96be"><td class="mdescLeft"> </td><td class="mdescRight">Object which runs the traceback stage of the search. <a href="group__AlgoBlast.html#ga8ff6746b35448604a2518c8c676b96be">More...</a><br /></td></tr>
|
||
<tr class="separator:ga8ff6746b35448604a2518c8c676b96be"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae30d1976de3150eefa06bd358719c355"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCLocalDbAdapter.html">CLocalDbAdapter</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae30d1976de3150eefa06bd358719c355">m_LocalDbAdapter</a></td></tr>
|
||
<tr class="memdesc:gae30d1976de3150eefa06bd358719c355"><td class="mdescLeft"> </td><td class="mdescRight">Local DB adaptor (if one was) passed to constructor. <a href="group__AlgoBlast.html#gae30d1976de3150eefa06bd358719c355">More...</a><br /></td></tr>
|
||
<tr class="separator:gae30d1976de3150eefa06bd358719c355"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga12a808f01e93a54b7460bf3823d436f6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classIBlastSeqInfoSrc.html">IBlastSeqInfoSrc</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga12a808f01e93a54b7460bf3823d436f6">m_SeqInfoSrc</a></td></tr>
|
||
<tr class="memdesc:ga12a808f01e93a54b7460bf3823d436f6"><td class="mdescLeft"> </td><td class="mdescRight">User-specified <a class="el" href="classIBlastSeqInfoSrc.html" title="Abstract base class to encapsulate retrieval of sequence identifiers.">IBlastSeqInfoSrc</a> implementation (may be used for non-standard databases, etc.) <a href="group__AlgoBlast.html#ga12a808f01e93a54b7460bf3823d436f6">More...</a><br /></td></tr>
|
||
<tr class="separator:ga12a808f01e93a54b7460bf3823d436f6"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5e6c883ac1edc354ca4d73dddd90b832"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classTSearchMessages.html">TSearchMessages</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5e6c883ac1edc354ca4d73dddd90b832">m_Messages</a></td></tr>
|
||
<tr class="memdesc:ga5e6c883ac1edc354ca4d73dddd90b832"><td class="mdescLeft"> </td><td class="mdescRight">Warnings and error messages. <a href="group__AlgoBlast.html#ga5e6c883ac1edc354ca4d73dddd90b832">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5e6c883ac1edc354ca4d73dddd90b832"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga9f8bd4d4111c725d0ebcde9e8594875f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">std::string</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9f8bd4d4111c725d0ebcde9e8594875f">m_batch_num_str</a></td></tr>
|
||
<tr class="separator:ga9f8bd4d4111c725d0ebcde9e8594875f"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="friends"></a>
|
||
Friends</h2></td></tr>
|
||
<tr class="memitem:ga5685cac1c5e8e1fac4570809b5b14d6f"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5685cac1c5e8e1fac4570809b5b14d6f">::CBlastFilterTest</a></td></tr>
|
||
<tr class="separator:ga5685cac1c5e8e1fac4570809b5b14d6f"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2fe81b140a37f09b6d9a2d710645842f"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2fe81b140a37f09b6d9a2d710645842f">CBl2Seq</a></td></tr>
|
||
<tr class="separator:ga2fe81b140a37f09b6d9a2d710645842f"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
|
||
Additional Inherited Members</h2></td></tr>
|
||
<tr class="inherit_header pub_types_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCObject')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> { <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca2b8c59f649cc88eeb7eaeba939e2838d">eAllocFillNone</a> = 1
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca336d7ff658b673c2e8fe3aed9b155f04">eAllocFillZero</a>
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588ccab3631bf1c36b77f950d94372290deb76">eAllocFillPattern</a>
|
||
}</td></tr>
|
||
<tr class="memdesc:ga3cf5f3ac0aef32c4aab1fa66513588cc"><td class="mdescLeft"> </td><td class="mdescRight">Control filling of newly allocated memory. <a href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCObjectCounterLocker.html">CObjectCounterLocker</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">TLockerType</a></td></tr>
|
||
<tr class="memdesc:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Default locker type for <a class="el" href="classCRef.html" title="CRef –.">CRef</a>. <a href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef atomic< <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">TCounter</a></td></tr>
|
||
<tr class="memdesc:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Counter type is CAtomiCounter. <a href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">More...</a><br /></td></tr>
|
||
<tr class="separator:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a></td></tr>
|
||
<tr class="memdesc:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Alias for value type of counter. <a href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_types_classCThreadable"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCThreadable')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classCThreadable.html">CThreadable</a></td></tr>
|
||
<tr class="memitem:gabdbe225a906d15069ba90faafb50872a inherit pub_types_classCThreadable"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom">{ <a class="el" href="group__AlgoBlast.html#ggabdbe225a906d15069ba90faafb50872aa374b71bf3da2ee4e7be2274f1413062d">kMinNumThreads</a> = 1
|
||
}</td></tr>
|
||
<tr class="memdesc:gabdbe225a906d15069ba90faafb50872a"><td class="mdescLeft"> </td><td class="mdescRight">Never have less than 1 thread. <a href="group__AlgoBlast.html#gabdbe225a906d15069ba90faafb50872a">More...</a><br /></td></tr>
|
||
<tr class="separator:gabdbe225a906d15069ba90faafb50872a inherit pub_types_classCThreadable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCObject')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">ThrowNullPointerException</a> (void)</td></tr>
|
||
<tr class="memdesc:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define method to throw null pointer exception. <a href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">More...</a><br /></td></tr>
|
||
<tr class="separator:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae042a181e665dd40945c1c1a7a6bc5d1">ThrowNullPointerException</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> type_info &<a class="el" href="structtype.html">type</a>)</td></tr>
|
||
<tr class="separator:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga4b6f1beef2a1f37c68f7f3b1aac471d8">GetAllocFillMode</a> (void)</td></tr>
|
||
<tr class="separator:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga42eceef165a83cc081837a373ab6dd67">SetAllocFillMode</a> (<a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> <a class="el" href="mdb__load_8c.html#a1ea5d0cb93f22f7d0fdf804bd68c3326">mode</a>)</td></tr>
|
||
<tr class="separator:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">SetAllocFillMode</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="memdesc:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Set mode from configuration parameter value. <a href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">More...</a><br /></td></tr>
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<tr class="separator:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_static_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
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<tr class="memitem:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ab6ba54280c562230f65733cca0560c83">EnableDebugDump</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> on)</td></tr>
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<tr class="separator:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_static_attribs_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_attribs_classCObject')"><img src="closed.png" alt="-"/> Static Public Attributes inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
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<tr class="memitem:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">eCounterBitsCanBeDeleted</a> = 1 << 0</td></tr>
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<tr class="memdesc:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define possible object states. <a href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">More...</a><br /></td></tr>
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<tr class="separator:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">eCounterBitsInPlainHeap</a> = 1 << 1</td></tr>
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||
<tr class="memdesc:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Heap signature was found. <a href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">More...</a><br /></td></tr>
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<tr class="separator:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">eCounterBitsPlaceMask</a></td></tr>
|
||
<tr class="memdesc:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mask for 'in heap' state flags. <a href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">More...</a><br /></td></tr>
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||
<tr class="separator:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">eCounterStep</a> = 1 << 2</td></tr>
|
||
<tr class="memdesc:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Skip over the "in heap" bits. <a href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">eCounterValid</a> = <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>(1) << (sizeof(<a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>) * 8 - 2)</td></tr>
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||
<tr class="memdesc:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Minimal value for valid objects (reference counter is zero) Must be a single bit value. <a href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">More...</a><br /></td></tr>
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||
<tr class="separator:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">eCounterStateMask</a></td></tr>
|
||
<tr class="memdesc:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Valid object, and object in heap. <a href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">More...</a><br /></td></tr>
|
||
<tr class="separator:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pro_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classCObject')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
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||
<tr class="memitem:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">DeleteThis</a> (void)</td></tr>
|
||
<tr class="memdesc:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Virtual method "deleting" this object. <a href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pro_attribs_classCThreadable"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classCThreadable')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classCThreadable.html">CThreadable</a></td></tr>
|
||
<tr class="memitem:ga83912c7cae68ed8a3c62de40fcfcefa6 inherit pro_attribs_classCThreadable"><td class="memItemLeft" align="right" valign="top">size_t </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga83912c7cae68ed8a3c62de40fcfcefa6">m_NumThreads</a></td></tr>
|
||
<tr class="memdesc:ga83912c7cae68ed8a3c62de40fcfcefa6 inherit pro_attribs_classCThreadable"><td class="mdescLeft"> </td><td class="mdescRight">Keep track of how many threads should be used. <a href="group__AlgoBlast.html#ga83912c7cae68ed8a3c62de40fcfcefa6">More...</a><br /></td></tr>
|
||
<tr class="separator:ga83912c7cae68ed8a3c62de40fcfcefa6 inherit pro_attribs_classCThreadable"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table>
|
||
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
|
||
<div class="textblock"><p>Class to perform a BLAST search on local BLAST databases Note that PHI-BLAST can be run using this class also, one only need to configure it as a regular blastp or blastn search and set the pattern in the <a class="el" href="classCBlastOptionsHandle.html" title="Handle to the options to the BLAST algorithm.">CBlastOptionsHandle</a> object. </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="local__blast_8hpp_source.html#l00061">61</a> of file <a class="el" href="local__blast_8hpp_source.html">local_blast.hpp</a>.</p>
|
||
</div><hr/>The documentation for this class was generated from the following files:<ul>
|
||
<li>include/algo/blast/api/<a class="el" href="local__blast_8hpp_source.html">local_blast.hpp</a></li>
|
||
<li>src/algo/blast/api/<a class="el" href="local__blast_8cpp_source.html">local_blast.cpp</a></li>
|
||
</ul>
|
||
</div><!-- contents -->
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Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.0
|
||
</small></address>
|
||
<address style="align: right;"><small>Modified on Fri Sep 20 14:57:25 2024 by modify_doxy.py rev. 669887</small></address>
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||
</body>
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</html>
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