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{"id":11214,"date":"2023-04-25T16:44:14","date_gmt":"2023-04-25T20:44:14","guid":{"rendered":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/?p=11214"},"modified":"2023-04-25T16:44:14","modified_gmt":"2023-04-25T20:44:14","slug":"updated-bacterial-and-archaeal-reference-genomes-collection","status":"publish","type":"post","link":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/04\/25\/updated-bacterial-and-archaeal-reference-genomes-collection\/","title":{"rendered":"New Release! Updated Bacterial and Archaeal Reference Genomes Collection Now Available"},"content":{"rendered":"<p>As <a href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/01\/06\/bacterial-archaeal-reference-genomes\/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=prok-rep-genomes-20230425\"><span data-contrast=\"auto\">previously announced<\/span><\/a><span data-contrast=\"auto\">, we are continuously curating a better Prokaryotic Reference Genomes Collection. <\/span><span data-contrast=\"auto\"> An updated\u202f<\/span><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/data-hub\/genome\/?taxon=2157%2C2&reference_only=true&utm_source=ncbi_insights&utm_medium=referral&utm_campaign=prok-rep-genomes-20230425\"><span data-contrast=\"auto\">bacterial and archaeal reference genome collection<\/span><\/a><span data-contrast=\"auto\">\u202fis now available! This collection of\u202f17,623 genomes was built by selecting exactly one genome assembly for each species among the 283,000+ prokaryotic genomes in RefSeq, except for\u202f<\/span><i><span data-contrast=\"auto\">E. coli<\/span><\/i><span data-contrast=\"auto\">\u202ffor which two assemblies were selected as reference.<\/span><span data-ccp-props=\"{"134233117":true,"134233118":true,"201341983":0,"335559739":160,"335559740":240}\">\u00a0<\/span><\/p>\n<h5>What\u2019s new?<\/h5>\n<ul>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"4\" data-list-defn-props=\"{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"\uf0b7","469777815":"hybridMultilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span data-contrast=\"auto\">480 species were added to this collection<\/span><span data-ccp-props=\"{"134233117":true,"134233118":true,"201341983":0,"335559739":160,"335559740":240}\">\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"3\" data-list-defn-props=\"{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"\uf0b7","469777815":"hybridMultilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"2\" data-aria-level=\"1\"><span data-contrast=\"auto\">178 species are represented by a better assembly<\/span><span data-ccp-props=\"{"134233117":true,"134233118":true,"201341983":0,"335559739":160,"335559740":240}\">\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"3\" data-list-defn-props=\"{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"\uf0b7","469777815":"hybridMultilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"3\" data-aria-level=\"1\"><span data-contrast=\"auto\">17 species were removed due to changes in NCBI Taxonomy or uncertainty in their species assignment<\/span><span data-ccp-props=\"{"134233117":true,"134233118":true,"201341983":0,"335559739":160,"335559740":240}\">\u00a0<\/span><\/li>\n<\/ul>\n<p><!--more--><\/p>\n<p><span data-contrast=\"auto\">We have updated the <\/span><a href=\"https:\/\/blast.ncbi.nlm.nih.gov\/Blast.cgi?PROGRAM=blastn&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome&utm_source=ncbi_insights&utm_medium=referral&utm_campaign=prok-rep-genomes-20230425\"><span data-contrast=\"auto\">nucleotide BLAST RefSeq reference genomes database<\/span><\/a><span data-contrast=\"auto\"> as well as the <\/span><a href=\"https:\/\/blast.ncbi.nlm.nih.gov\/Blast.cgi?PAGE_TYPE=BlastSearch&BLAST_SPEC=MicrobialGenomes&utm_source=ncbi_insights&utm_medium=referral&utm_campaign=prok-rep-genomes-20230425\"><span data-contrast=\"auto\">Microbial Nucleotide BLAST page<\/span><\/a><span data-contrast=\"auto\"> to reflect this change. You can also run <\/span><a href=\"https:\/\/blast.ncbi.nlm.nih.gov\/Blast.cgi?PROGRAM=blastp&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome&utm_source=ncbi_insights&utm_medium=referral&utm_campaign=prok-rep-genomes-20230425\"><span data-contrast=\"auto\">BLAST searches against the proteins annotated on these reference genomes<\/span><\/a><span data-contrast=\"auto\">.<\/span><span data-ccp-props=\"{"134233117":true,"134233118":true,"201341983":0,"335559739":160,"335559740":240}\">\u00a0<\/span><\/p>\n<h5>Stay up to date<\/h5>\n<p><span data-contrast=\"auto\">Follow us on Twitter <\/span><a href=\"https:\/\/twitter.com\/ncbi\"><span data-contrast=\"auto\">@NCBI<\/span><\/a> <span data-contrast=\"auto\">and <\/span><a href=\"https:\/\/public.govdelivery.com\/accounts\/USNLMOCPL\/subscriber\/new?topic_id=USNLMOCPL_52\"><span data-contrast=\"auto\">join our mailing list<\/span><\/a> <span data-contrast=\"auto\">to keep up to date with the bacterial and archaeal reference genomes collection\u202fand other NCBI news.\u202f\u202f\u202f\u202f<\/span><span data-ccp-props=\"{"134233117":true,"134233118":true,"201341983":0,"335559739":160,"335559740":240}\">\u00a0<\/span><\/p>\n<h5>We want to hear from you!<\/h5>\n<p><span data-contrast=\"auto\">If you have questions or would like to provide feedback, please reach out to us\u00a0<\/span><span data-contrast=\"auto\">at info@ncbi.nlm.nih.gov.<\/span><span data-ccp-props=\"{"134233117":true,"134233118":true,"201341983":0,"335559739":160,"335559740":240}\">\u00a0<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>As previously announced, we are continuously curating a better Prokaryotic Reference Genomes Collection. An updated\u202fbacterial and archaeal reference genome collection\u202fis now available! This collection of\u202f17,623 genomes was built by selecting exactly one genome assembly for each species among the 283,000+ prokaryotic genomes in RefSeq, except for\u202fE. coli\u202ffor which two assemblies were selected as reference.\u00a0 What\u2019s … <a href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/04\/25\/updated-bacterial-and-archaeal-reference-genomes-collection\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">New Release! Updated Bacterial and Archaeal Reference Genomes Collection Now Available<\/span> <span class=\"meta-nav\">→<\/span><\/a><\/p>\n","protected":false},"author":42204617,"featured_media":10443,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"New Release! Updated Bacterial and Archaeal Reference Genomes Collection Now Available","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","enabled":false},"version":2}},"categories":[2248],"tags":[77187,34457,53114734,576953096,27739816],"table_tags":[],"class_list":["post-11214","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-whats-new","tag-blast","tag-taxonomy","tag-blastn","tag-prokaryotic-genome-annotation","tag-refseq"],"jetpack_publicize_connections":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.6 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>New Release! 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This collection of\u202f17,623 genomes was built by selecting exactly one genome assembly for each species among the 283,000+ prokaryotic genomes in RefSeq, except for\u202fE. coli\u202ffor which two assemblies were selected as reference.\u00a0 What\u2019s … Continue reading New Release! Updated Bacterial and Archaeal Reference Genomes Collection Now Available →\" \/>\n<meta property=\"og:url\" content=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/04\/25\/updated-bacterial-and-archaeal-reference-genomes-collection\/\" \/>\n<meta property=\"og:site_name\" content=\"NCBI Insights\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/ncbi.nlm\" \/>\n<meta property=\"article:published_time\" content=\"2023-04-25T20:44:14+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2023\/01\/Prok-2-e1673034929164.png\" \/>\n\t<meta property=\"og:image:width\" content=\"1100\" \/>\n\t<meta property=\"og:image:height\" content=\"575\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/png\" \/>\n<meta name=\"author\" content=\"NCBI Staff\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@NCBI\" \/>\n<meta name=\"twitter:site\" content=\"@NCBI\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"NCBI Staff\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"Article\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/04\/25\/updated-bacterial-and-archaeal-reference-genomes-collection\/#article\",\"isPartOf\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/04\/25\/updated-bacterial-and-archaeal-reference-genomes-collection\/\"},\"author\":{\"name\":\"NCBI Staff\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/#\/schema\/person\/4f41ea6a31cea38a9a1b1419c048e50b\"},\"headline\":\"New Release! 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