146 lines
59 KiB
HTML
146 lines
59 KiB
HTML
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/*# sourceURL=/css/ampshared.css*/</style><meta property="og:locale" content="en_US"><meta property="og:type" content="article"><meta property="og:title" content="New Annotations in RefSeq! - NCBI Insights"><meta property="og:description" content="In July, August, and September, the NCBI Eukaryotic Genome Annotation Pipeline released fifty-six new annotations in RefSeq! New Annotations Achroia grisella (moth) Acipenser ruthenus (sterlet) Ahaetulla prasina (snake) Alligator mississippiensis (American alligator) Ammospiza caudacuta (bird) Ammospiza nelsoni (bird) Anopheles bellator (mosquito) Anopheles coustani (mosquito) Anopheles ziemanni (mosquito) Arachis stenosperma (eudicot) Carassius carassius (crucian carp) Centropristis striata (black seabass) … Continue reading New Annotations in RefSeq! →"><meta property="og:url" content="https://ncbiinsights.ncbi.nlm.nih.gov/2023/10/24/new-annotations-in-refseq-2/"><meta property="og:site_name" content="NCBI Insights"><meta property="article:publisher" content="https://www.facebook.com/ncbi.nlm"><meta property="article:published_time" content="2023-10-24T16:07:24+00:00"><meta property="article:modified_time" content="2023-10-24T19:33:52+00:00"><meta property="og:image" content="https://ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/10/iStock-1398221247-e1698162027143.jpg"><meta 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<article class="amp-wp-article">
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<h1 class="amp-wp-title">New Annotations in RefSeq!</h1>
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<time datetime="2023-10-24T16:07:24+00:00">
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1 year ago </time>
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<amp-img width="1024" height="683" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/10/iStock-1398221247-e1698162027143.jpg?fit=1024%2C683&ssl=1" class="attachment-large size-large wp-post-image amp-wp-enforced-sizes i-amphtml-layout-intrinsic i-amphtml-layout-size-defined" alt="White flowering dogwood branch." data-hero-candidate="" layout="intrinsic" data-hero i-amphtml-ssr i-amphtml-layout="intrinsic"><i-amphtml-sizer slot="i-amphtml-svc" class="i-amphtml-sizer"><img alt="" aria-hidden="true" class="i-amphtml-intrinsic-sizer" role="presentation" src="data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjY4MyIgd2lkdGg9IjEwMjQiIHhtbG5zPSJodHRwOi8vd3d3LnczLm9yZy8yMDAwL3N2ZyIgdmVyc2lvbj0iMS4xIi8+"></i-amphtml-sizer><img class="i-amphtml-fill-content i-amphtml-replaced-content" decoding="async" loading="lazy" alt="White flowering dogwood branch." src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/10/iStock-1398221247-e1698162027143.jpg?fit=1024%2C683&ssl=1"></amp-img> <p class="wp-caption-text">
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Dogwood tree in bloom in North Eastern Tennessee </p>
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</figure>
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<div class="amp-wp-article-content">
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<p>In July, August, and September, the <a class="external-link" title="Follow link" href="https://www.ncbi.nlm.nih.gov/genome/annotation_euk/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=refseq-update-20231024" target="_blank" rel="nofollow noopener">NCBI Eukaryotic Genome Annotation Pipeline</a> released <a href="https://www.ncbi.nlm.nih.gov/datasets/genome/?accession=GCF_030625045.1%2CGCF_902713425.1%2CGCF_028640845.1%2CGCF_030867095.1%2CGCF_027887145.1%2CGCF_027579445.1%2CGCF_943735745.2%2CGCF_943734705.1%2CGCF_943734765.1%2CGCF_014773155.1%2CGCF_963082965.1%2CGCF_030273125.1%2CGCF_030987335.1%2CGCF_901000735.1%2CGCF_030265065.1%2CGCF_030272615.1%2CGCF_022539665.2%2CGCF_030445035.1%2CGCF_020826845.1%2CGCF_026250575.1%2CGCF_030265055.1%2CGCF_030936135.1%2CGCF_019097595.1%2CGCF_030052815.1%2CGCF_015227805.2%2CGCF_009828535.3%2CGCF_026419965.1%2CGCF_029784015.1%2CGCF_029962835.1%2CGCF_029873635.1%2CGCF_030247185.1%2CGCF_021218885.2%2CGCF_028018845.1%2CGCF_030504385.1%2CGCF_030435805.1%2CGCF_022355385.1%2CGCF_963259705.1%2CGCF_031216515.1%2CGCF_028018385.1%2CGCF_030435755.1%2CGCF_012432095.1%2CGCF_949786415.1%2CGCF_947086385.1%2CGCF_024137745.1%2CGCF_028476545.1%2CGCF_030620025.1%2CGCF_030490865.1%2CGCF_030253575.1%2CGCF_028751815.1%2CGCF_958295425.1%2CGCF_030684315.1%2CGCF_963082655.1%2CGCF_007210705.1%2CGCF_030247195.1%2CGCF_029867415.1%2CGCF_030704535.1&utm_source=ncbi_insights&utm_medium=referral&utm_campaign=refseq-update-20231024">fifty-six new annotations</a> in <a class="external-link" title="Follow link" href="https://www.ncbi.nlm.nih.gov/refseq/about/" target="_blank" rel="nofollow noopener">RefSeq</a>!</p>
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<h5>New Annotations</h5>
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<ul>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Achroia grisella (moth)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Acipenser ruthenus (sterlet)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Ahaetulla prasina (snake)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Alligator mississippiensis (American alligator)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Ammospiza caudacuta (bird)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Ammospiza nelsoni (bird)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Anopheles bellator (mosquito)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Anopheles coustani (mosquito)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Anopheles ziemanni (mosquito)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Arachis stenosperma (eudicot)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Carassius carassius (crucian carp)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Centropristis striata (black seabass)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Cornus florida (flowering dogwood) <em>(pictured)</em></span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Corylus avellana (European hazelnut)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Corythoichthys intestinalis (scribbled pipefish) </span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Cryptomeria japonica (Japanese cedar)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Daphnia carinata (crustacean)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Dasypus novemcinctus (nine-banded armadillo)</span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Diceros bicornis minor (black rhinoceros)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Diorhabda carinulata (beetle)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Doryrhamphus excisus (bluestripe pipefish)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Gavia stellata (red-throated loon)</span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Hemibagrus wyckioides (bony fish)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Hevea brasiliensis (rubber tree)</span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Hirundo rustica (Barn swallow)</span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Hylobates moloch (silvery gibbon)</span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Kogia breviceps (pygmy sperm whale)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Lycium ferocissimum (eudicot)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Magnolia sinica (flowering plant)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Malania oleifera (eudicot)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Malaya genurostris (mosquito)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Marmota monax (woodchuck)</span></li>
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Melospiza georgiana (bird)</span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Musca domestica (house fly)</span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Mustela lutreola (European mink)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Mustela nigripes (black-footed ferret)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Myotis daubentonii (Daubenton’s bat)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Neocloeon triangulifer (mayfly)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Neofelis nebulosa (Clouded leopard)</span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Ochotona princeps (American pika)</span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Onychostoma macrolepis (bony fish)</span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Peromyscus eremicus (cactus mouse)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Phlebotomus argentipes (fly)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Phymastichus coffea (wasps, ants & bees)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Physella acuta (gastropod)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Pocillopora verrucosa (stony corals)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Poecile atricapillus (Black-capped chickadee)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Rhododendron vialii (eudicot)</span></li>
|
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<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Salvia miltiorrhiza (eudicot)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Solea solea (common sole)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Stegostoma tigrinum (sharks & rays)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Stomoxys calcitrans (stable fly)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Tigriopus californicus (tidepool copepod)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Topomyia yanbarensis (mosquito)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Vicia villosa (hairy vetch)</span></li>
|
||
<li><span data-amp-original-style="font-size: 17px;" class="amp-wp-8bdd01f">Vitis vinifera (wine grape)</span></li>
|
||
</ul>
|
||
<p>View the full list of annotated eukaryotes available in the <a class="external-link" title="Follow link" href="https://www.ncbi.nlm.nih.gov/genome/gdv/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=refseq-update-20231024" target="_blank" rel="nofollow noopener">GDV genome browser</a>. You can download genome sequence and metadata using the <a class="external-link" title="Follow link" href="https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/download-genome/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=refseq-update-20231024" target="_blank" rel="nofollow noopener">NCBI Datasets command line tool</a>.</p>
|
||
<h5>Stay up to date</h5>
|
||
<p>RefSeq is part of the <a href="https://www.ncbi.nlm.nih.gov/comparative-genomics-resource/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=refseq-update-20231024">NIH Comparative Genomics Resource (CGR)</a>. <span data-contrast="none">CGR facilitates reliable comparative genomics analyses for all eukaryotic organisms through an NCBI Toolkit and community collaboration. </span><span data-ccp-props='{"134233117":true,"134233118":true,"201341983":0,"335559739":160,"335559740":240}'> </span></p>
|
||
<p>CGR is also making it easier to navigate between data and tools. To see this list and find out what’s in the RefSeq annotation pipeline, check out the <a href="https://www.ncbi.nlm.nih.gov/datasets/genome/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=refseq-update-20230724">new table</a> in NCBI Datasets with information on the latest eukaryotic RefSeq annotations.</p>
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<p><a class="external-link" href="https://public.govdelivery.com/accounts/USNLMOCPL/subscriber/new?topic_id=USNLMOCPL_50%22" rel="nofollow">Join our mailing list</a> to keep up to date with RefSeq and other CGR news.</p>
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<h5>Questions?</h5>
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<p><span data-ccp-props='{"201341983":0,"335559739":0,"335559740":240}'>If you have questions or would like to provide feedback, please <a href="https://support.nlm.nih.gov/support/create-case/">write to our help desk</a>. </span></p>
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