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<h4 class="margin-bottom-0"> <a href="/ncbi/conferences/PAG/PAG.html" title="NCBI @ PAG 32" class="text-white">NCBI @ PAG 32</a></h4>
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<div class="h1">NCBI Resources</div>
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<h3 style="text-align: center;"><span style="color: #326295;">The NIH Comparative Genomics Resource (CGR)</span></h3>
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The National Institutes of Health (NIH) Comparative Genomics Resource (CGR) is a multi-year National Library of Medicine (NLM) project to maximize the impact of eukaryotic research organisms and their genomic data resources to biomedical research.<p>
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<a title="Link to the Comparative Genomics Resource (CGR) webpage" href="https://www.ncbi.nlm.nih.gov/comparative-genomics-resource/?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank" ><img width="15%" src="/ncbi/conferences/Images/btn_access.png" alt="Website button"></a>
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<h3>BLAST</h3>
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<p>BLAST® finds regions of similarity between biological sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance.</p>
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<a title="Link to the BLAST webpage" href="https://blast.ncbi.nlm.nih.gov/?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank"><img width="15%" src="/ncbi/conferences/Images/btn_access.png" alt="Website button"></a>
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<a title="Link to the BLAST News flyer" href="https://ftp.ncbi.nlm.nih.gov/pub/factsheets/Flyer_BLAST_News.pdf?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank"><img width="15%" src="/ncbi/conferences/Images/btn_flyer.png" alt="Flyer button"></a><br>
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<h3>Comparative Genome Viewer (CGV)</h3>
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<p>The Comparative Genome Viewer (CGV) tool allows you to compare two genomes based on assembly-assembly alignments provided by NCBI.</p>
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<a title=Link to the Comparative Genome Viewer webpage" href="https://www.ncbi.nlm.nih.gov/genome/cgv/?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank" ><img width="15%" src="/ncbi/conferences/Images/btn_access.png" alt="Website button"></a>
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<a title="Link to the Comparative Genome Viewer flyer" href="https://ftp.ncbi.nlm.nih.gov/pub/factsheets/Flyer_CGV.pdf?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank"><img width="15%" src="/ncbi/conferences/Images/btn_flyer.png" alt="Flyer button"></a><br>
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<h3>Foreign Contamination Screen (FCS)</h3>
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<p>The NCBI Foreign Contamination Screen (FCS) is a tool suite for identifying and removing contaminant sequences in genome assemblies. Contaminants are defined as sequences in a dataset that do not originate from the biological source organism and can arise from a variety of environmental and laboratory sources. FCS will help you remove contaminants from genomes before submission to GenBank.</p>
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<div class="grid-row grid-gap">
|
||
<div class="mobile:grid-col-12">
|
||
<h3>Genome Data Viewer (GDV)</h3>
|
||
<p>The Genome Data Viewer (GDV) supports the exploration and analysis of NCBI-annotated and selected non-NCBI annotated eukaryotic genome assemblies. Currently, assemblies from over 1600 organisms are available.</p>
|
||
<a title="Link to the Genome Data Viewer webpage" href="https://www.ncbi.nlm.nih.gov/genome/gdv/?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank"><img width="15%" src="/ncbi/conferences/Images/btn_access.png" alt="Website button"></a>
|
||
<a title="Link to the Genome Data Viewer flyer" href="https://ftp.ncbi.nlm.nih.gov/pub/factsheets/Flyer_GDV.pdf?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank"><img width="15%" src="/ncbi/conferences/Images/btn_flyer.png" alt="Flyer button"></a><br>
|
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</div>
|
||
</div>
|
||
<div class="grid-row grid-gap">
|
||
<div class="mobile:grid-col-12">
|
||
<h3>NCBI Datasets</h3>
|
||
<p>NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases in the website or with command-line tools or APIs. Find and download gene, transcript, protein and genome sequences, annotation and metadata.</p>
|
||
<a title="Link to the NCBI Datasets webpage" href="https://www.ncbi.nlm.nih.gov/datasets/?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank" id="anch_63"><img width="15%" src="/ncbi/conferences/Images/btn_access.png" alt="Website button"></a>
|
||
<a title="Link to the NCBI Datasets flyer" href="https://ftp.ncbi.nlm.nih.gov/pub/factsheets/Flyer_Datasets.pdf?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank" id="anch_64"><img width="15%" src="/ncbi/conferences/Images/btn_flyer.png" alt="Flyer button"></a>
|
||
<a title="Link to the NCBI Datasets video" href="https://youtu.be/2_57xOi-aSg" id="anch_65" target="_blank" ><img width="15%" src="/ncbi/conferences/Images/btn_video.png" alt="Video button"></a><br>
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<!-- third category -->
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|
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<h4 class="usa-accordion__heading">
|
||
<button id="button-program-product-update-3" type="button" class="usa-accordion__button" aria-expanded="false">Sequence Resources</button>
|
||
</h4>
|
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<div id="program-product-update-3" class="usa-accordion__content usa-prose">
|
||
|
||
|
||
<div class="grid-row grid-gap">
|
||
<div class="mobile:grid-col-12">
|
||
<h3>GenBank</h3>
|
||
<p>GenBank® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. GenBank is part of the International Nucleotide Sequence Database Collaboration, which comprises the DNA DataBank of Japan (DDBJ), the European Nucleotide Archive (ENA), and GenBank at NCBI. These three organizations exchange data on a daily basis.</p>
|
||
<a title="Link to the GenBank information webpage" href="https://www.ncbi.nlm.nih.gov/genbank/?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank" ><img width="15%" src="/ncbi/conferences/Images/btn_access.png" alt="Website button"></a><br>
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</div>
|
||
|
||
<br>
|
||
<div class="grid-row grid-gap">
|
||
<div class="mobile:grid-col-12">
|
||
<h3>The NCBI Submission Portal</h3>
|
||
<p>NCBI's Submission Portal allows you to submit your data to the world's largest public repository of biological and scientific information.</p>
|
||
<a title="Link to the NCBI Submission Portal webpage" href="https://submit.ncbi.nlm.nih.gov/?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank" ><img width="15%" src="/ncbi/conferences/Images/btn_access.png" alt="Website button"></a><br>
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</div>
|
||
</div>
|
||
<div class="grid-row grid-gap">
|
||
<div class="mobile:grid-col-12">
|
||
<h3>RefSeq</h3>
|
||
<p>The NCBI Reference Sequence Database (RefSeq) is a comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.</p>
|
||
<a title="Link to the RefSeq Project information webpage" href="https://www.ncbi.nlm.nih.gov/refseq/?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank" ><img width="15%" src="/ncbi/conferences/Images/btn_access.png" alt="Website button"></a><br>
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</div>
|
||
</div>
|
||
<div class="grid-row grid-gap">
|
||
<div class="mobile:grid-col-12">
|
||
<h3>Sequence Read Archive (SRA)</h3>
|
||
<p>Sequence Read Archive data, available through multiple cloud providers and NCBI servers, is the largest publicly available repository of high throughput sequencing data. The archive accepts data from all branches of life as well as metagenomic and environmental surveys. SRA stores raw sequencing data and alignment information (if submitted) to enhance reproducibility and facilitate new discoveries through data analysis.</p>
|
||
<a title="Link to the SRA database webpage" href="https://www.ncbi.nlm.nih.gov/sra?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank" ><img width="15%" src="/ncbi/conferences/Images/btn_access.png" alt="Website button"></a><br>
|
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</div>
|
||
</div>
|
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</div>
|
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|
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<!-- literature section -->
|
||
<h4 class="usa-accordion__heading">
|
||
<button id="button-program-product-update-15" type="button" class="usa-accordion__button" aria-expanded="false">Literature Resources</button>
|
||
</h4>
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<div id="program-product-update-15" class="usa-accordion__content usa-prose">
|
||
|
||
|
||
<div class="grid-row grid-gap">
|
||
<div class="mobile:grid-col-12">
|
||
<h3>PubMed</h3>
|
||
<p>PubMed® comprises more than 34 million citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full text content from PubMed Central and publisher web sites.</p>
|
||
<a title="Link to the PubMed database webpage" href="https://pubmed.ncbi.nlm.nih.gov/?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank" id="anch_73"><img width="15%" src="/ncbi/conferences/Images/btn_access.png" alt="Website button"></a><br>
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</div>
|
||
</div>
|
||
<div class="grid-row grid-gap">
|
||
<div class="mobile:grid-col-12">
|
||
<h3>PubMed Central (PMC)</h3>
|
||
<p>PubMed Central® (PMC) is a free full-text archive of biomedical and life sciences journal literature.</p>
|
||
<a title="Link to the PubMed Central (PMC)database webpage" href="https://www.ncbi.nlm.nih.gov/pmc/?utm_source=conference-site&utm_medium=referrer&utm_campaign=pag-resources" target="_blank" id="anch_74"><img width="15%" src="/ncbi/conferences/Images/btn_access.png" alt="Website button"></a><br>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
</div>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<p class=”margin-top-5”><small>Last Reviewed: October 11, 2024</small></p>
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