1229 lines
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1229 lines
48 KiB
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<div class="col1">
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<h1>
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CGI Parameters</h1>
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<ul>
|
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<li>
|
||
for CGI the parameters are encoded as <strong>param=value</strong></li>
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<li>
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||
for command-line, they look like <strong>-param value</strong></li>
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</ul>
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<h2>
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Data source and destination</h2>
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<table border="2" cellpadding="2" cellspacing="2">
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<tbody>
|
||
<tr>
|
||
<th>
|
||
<em><strong>param</strong></em></th>
|
||
<th>
|
||
<em><strong>default value</strong></em></th>
|
||
<th>
|
||
<em><strong>value description</strong></em></th>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>btc_id</strong></td>
|
||
<td>
|
||
mandatory</td>
|
||
<td>
|
||
One of the following:
|
||
<ul>
|
||
<li>
|
||
NetCache or NetStorage ID of a serialized BioTreeContainer ASN.1 structure from which the tree image will be generated</li>
|
||
<li>
|
||
File with a serialized BioTreeContainer ASN.1 structure; for security only files under a directory defined in the .ini file will be read</li>
|
||
<li>
|
||
URL (HTTP/FTP/FILE) of a serialized BioTreeContainer ASN.1 structure from which the tree image will be generated</li>
|
||
</ul>
|
||
</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>ifmt</strong></td>
|
||
<td>
|
||
optional</td>
|
||
<td>
|
||
input file format: asnt (ASN text), asnb (ASN binary).<br />
|
||
Note: the input file format is auto-detected. This parameter is optional.</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>output_file</strong></td>
|
||
<td>
|
||
command-line app only</td>
|
||
<td>
|
||
redirects output to a given file</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>imgfmt</strong></td>
|
||
<td>
|
||
png</td>
|
||
<td>
|
||
one of: png, jpg, pdf. PDF mode is not compatible with setting viewports</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>returntree</strong></td>
|
||
<td>
|
||
false</td>
|
||
<td>
|
||
whether or not put the source BioTreeContainer into JSON result</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>returntreedict</strong></td>
|
||
<td>
|
||
false</td>
|
||
<td>
|
||
if true, put the dictionary portion of the BioTreeContainer into the JSON result</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>dltree</strong></td>
|
||
<td>
|
||
false</td>
|
||
<td>
|
||
Return BioTreeContainer as a netcache object exported in the format <strong>ofmt</strong>. The netcache ID for this object is returned as <strong>treekey </strong>in <strong>TV_TreeImgDesc.</strong></td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>nodereturnmode</strong></td>
|
||
<td>
|
||
full</td>
|
||
<td>
|
||
Set to 'full', 'brief' or 'local'. 'brief' mode will only return information for selected nodes and, if returnselchildren is true, their children in TV_TreeImgDesc. 'local' will only return information on the nodes of tiles being rendered in the current cgi call.</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>returnselchildren</strong></td>
|
||
<td>
|
||
false</td>
|
||
<td>
|
||
If nodereturnmode is 'brief', this will force the return of the children of selected nodes</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>maxselectreturn</strong></td>
|
||
<td>
|
||
-1</td>
|
||
<td>
|
||
If > -1, then this limits the number of selected nodes that will be returned to the specified value</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>nodereturndistthreshold</strong></td>
|
||
<td>
|
||
6.0</td>
|
||
<td>
|
||
If the distance between nodes is less than this value, node and label position data will not be returned</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>featnames</strong></td>
|
||
<td>
|
||
blank</td>
|
||
<td>
|
||
when treturning node data, "seq-id", "seq-title" and "accesion-nbr" are always returned unless <strong>featnames </strong>"!none". Any additional features can be requested in the comma separated list <strong>featnames</strong>. If <strong>featnames</strong> is "*", all features will be returned.</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>ofmt</strong></td>
|
||
<td>
|
||
optional</td>
|
||
<td>
|
||
Output file format: <strong>asnt</strong> (ASN text), <strong>asnb </strong>(ASN binary), <strong>xml </strong>(XML format), <strong>newick </strong>(Newick tree format), <strong>nexus</strong> (NEXUS format).</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>attriburl</strong></td>
|
||
<td>
|
||
optional</td>
|
||
<td>
|
||
URL which should return phylogentic-tree compatible attributes file. Returned file is used to update node features.</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>attribupdate</strong></td>
|
||
<td>
|
||
<span>optional</span></td>
|
||
<td>
|
||
If true, the updated tree is saved. This only works if the tree was read from netstorage.</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>descfmt</strong></td>
|
||
<td>
|
||
json</td>
|
||
<td>
|
||
format of returned tree description - one of: json, asnt, asnb, xml</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>rendertonetcache</strong></td>
|
||
<td>
|
||
true</td>
|
||
<td>
|
||
if set to false, will output the image directly to CGI/command-line app output; otherwise will save it to NetCache and return tree image information in JSON format</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
|
||
|
||
<h2 id="image-dimensions">
|
||
Image Dimensions</h2>
|
||
|
||
|
||
<table border="2" cellpadding="2" cellspacing="2">
|
||
<tbody>
|
||
<tr>
|
||
<th>
|
||
<em><strong>param</strong></em></th>
|
||
<th>
|
||
<em><strong>default value</strong></em></th>
|
||
<th>
|
||
<em><strong>value description</strong></em></th>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>width</strong></td>
|
||
<td>
|
||
mandatory if dynamicviewport is not true</td>
|
||
<td>
|
||
width of the area to draw the tree. If dynamicviewport is true, providing width enables vertical-only zoom.</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>height</strong></td>
|
||
<td>
|
||
mandatory if dynamicviewport is not true</td>
|
||
<td>
|
||
height of the area to draw the tree. Ignored if dynamicviewport is true.</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>tilewidth</strong></td>
|
||
<td>
|
||
optional; -1</td>
|
||
<td>
|
||
Width of a single tile when rendering multiple tiles. Should be a divisor of width. Ignored on calls with dynamicviewport=true</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>tileheight</strong></td>
|
||
<td>
|
||
optional; -1</td>
|
||
<td>
|
||
Height of a single tile when rendering multiple tiles. Should be a divisor of height. Ignored on calls with dynamicviewport=true</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>maxdim</strong></td>
|
||
<td>
|
||
optional; 8192</td>
|
||
<td>
|
||
Maximum tile dimension - for browsers that won't support larger images</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>rendertiles</strong></td>
|
||
<td>
|
||
optional; blank</td>
|
||
<td>
|
||
List of tiles to render in the format (x1,y1), (x2,y2),...(xn,yn) where x and y are the 0-based indices of the tile in the set of all tiles. If rendertiles is blank, all tiles will be rendered</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>dynamicviewport</strong></td>
|
||
<td>
|
||
optional; false</td>
|
||
<td>
|
||
if true, the viewport may be automatically adjusted to match the tree size; the new size will be returned in JSON (see <a href="/tools/treeviewer/cgiwebservice/#overallimageinformation">Overall image information</a>)</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>autoaspectratio</strong></td>
|
||
<td>
|
||
<p>
|
||
optional; false </p>
|
||
<p>
|
||
requires <strong>dynamicviewport</strong>, <strong>clientviewportwidth</strong><span> and </span><strong>clientviewportheight</strong></p>
|
||
</td>
|
||
<td>
|
||
compute optimal window size - one that is large enough for the labels to appear and which is proportional, as much as possible, to <strong>clientviewportwidth</strong> and <strong>clientviewportheight</strong>. The size of the optimal image is returned in <strong>renderingparameters</strong> as <strong>minzoomwidth</strong> and <strong>minzoomheight</strong>. If <strong>pctmaxzoom</strong> is not specified, the returned image is this same size. </td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>pctmaxzoom</strong></td>
|
||
<td>
|
||
optional; -1</td>
|
||
<td>
|
||
This is a number between 0 and 100 that can be optionally provided along with <strong>autoaspectratio</strong>. When provided, both minimum and maximum image dimensions will be returned with <strong>renderingparameters</strong> as (<strong>minzoomwidth</strong>, <span><strong>minzoomheight</strong>) and (<strong>maxzoomwidth</strong>, <strong>maxzoomheight</strong>). The size of the returned image will be interpolated between these two sizes based on <strong>pctmaxzoom</strong>. </span></td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>maxzoomscaler</strong></td>
|
||
<td>
|
||
optional; 1.5</td>
|
||
<td>
|
||
Scales the maximum zoom - a value of 1.5 for example indicates that the user will be allowed to zoom in until 1.5 times the zoom level at which labels appear</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>generateoverview</strong></td>
|
||
<td>
|
||
<p>
|
||
optional; none</p>
|
||
<p>
|
||
options are: <strong>none</strong>, <strong>with-image</strong>, or <strong>without-image</strong></p>
|
||
</td>
|
||
<td>
|
||
Tell server to create a separate overview image with size equal to the client viewport size. If <strong>without-image</strong> is specified the normal full size image will <strong>not</strong> be generated. Overview image is returned via netcache ID.</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong><span>clientviewportwidth</span></strong></td>
|
||
<td>
|
||
optional; 0</td>
|
||
<td>
|
||
width of the client viewport. Also used with <strong>autoaspectratio</strong></td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong><span>clientviewportheight</span></strong></td>
|
||
<td>
|
||
optional; 0</td>
|
||
<td>
|
||
height of the client viewport. <span>Also used with </span><strong>autoaspectratio</strong></td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>clientviewportx</strong></td>
|
||
<td>
|
||
optional; -1</td>
|
||
<td>
|
||
The x coordinate of the viewport relative the the overall (possibly tiled) image. Allows server to calculate which tiles overlap the client viewport in its current position</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>clientviewporty</strong></td>
|
||
<td>
|
||
-optional; 1</td>
|
||
<td>
|
||
The y coordinate of the viewport relative to the overall (possibly tiled) image. Allows server to calculate which tiles overlap the client viewport in its current position.</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>renderclientoverlap</strong></td>
|
||
<td>
|
||
<p>
|
||
optional; no-overlap</p>
|
||
<p>
|
||
options are: <strong>no-overlap</strong>, <strong>client</strong>, <strong>selection</strong>, or <strong>node-id</strong></p>
|
||
</td>
|
||
<td>
|
||
If we are rendering tiles, indicates if we only want to render tiles that overlap the client viewport coordinates, the current selection or first node in querynodeIDs. </td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>margins</strong></td>
|
||
<td>
|
||
optional; 0 px</td>
|
||
<td>
|
||
Same margins on all sides</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>bottommargin</strong></td>
|
||
<td>
|
||
optional; same as <strong>margins</strong></td>
|
||
<td>
|
||
If set, overrides the bottom margin (even if <strong>margins</strong> is set)</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
|
||
|
||
<h2 id="treeshape">
|
||
Tree layout and appearance</h2>
|
||
|
||
|
||
<table border="2" cellpadding="2" cellspacing="2">
|
||
<tbody>
|
||
<tr>
|
||
<th>
|
||
<em><strong>param</strong></em></th>
|
||
<th>
|
||
<em><strong>default value</strong></em></th>
|
||
<th>
|
||
<em><strong>value description</strong></em></th>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>renderer</strong></td>
|
||
<td>
|
||
optional; rect</td>
|
||
<td>
|
||
shape of the rendered tree, one of: rect, slanted, radial, force, circular</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>distmode</strong></td>
|
||
<td>
|
||
optional; true</td>
|
||
<td>
|
||
flag whether to take distance into account when rendering the image (see also <strong>dist</strong> feature in <a href="/tools/treeviewer/biotreecontainer/#featureswithspecialmeaning">Features with special meaning</a>)</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>renderscale</strong></td>
|
||
<td>
|
||
optional; true</td>
|
||
<td>
|
||
if true, scale marker will be rendered on the image</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>solidleaves</strong></td>
|
||
<td>
|
||
optional; false</td>
|
||
<td>
|
||
<span>if true, all leaf nodes will be drawn in a uniform solid color, otherwise leaves will have highlights like other nodes.</span></td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>edgehighlight</strong></td>
|
||
<td>
|
||
<p>
|
||
optional; none.</p>
|
||
<p>
|
||
options are: <strong>none</strong>, <strong>image</strong>, <strong>overview</strong>, <strong>both</strong></p>
|
||
</td>
|
||
<td>
|
||
if <strong>image </strong>or <strong>both</strong>, longer edges of main image are highlighted (darker) than other edges and if <strong>overview </strong>or <strong>both </strong>longer edges in overimage are highlighted</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>labelvis</strong></td>
|
||
<td>
|
||
optional; leaf</td>
|
||
<td>
|
||
controls which kinds of nodes have their labels printed on the image, one of: <strong>leaf</strong>, <strong>all</strong>, <strong>none</strong></td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>labelformat</strong></td>
|
||
<td>
|
||
optional; $(label)</td>
|
||
<td>
|
||
format string for generating a node label from node features (see <a href="/tools/treeviewer/biotreecontainer/#featureswithspecialmeaning">Features with special meaning</a>)</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>maxlabellen</strong></td>
|
||
<td>
|
||
optional; -1 (no maximum)</td>
|
||
<td>
|
||
Truncate all labels with length greater than <strong>maxlabellen</strong></td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>labelspacing</strong></td>
|
||
<td>
|
||
optional; 2.0</td>
|
||
<td>
|
||
scale dynamic viewport to adjust label spacing, 1.0=>minimum, 2.0=>doublespaced</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>rotatedlabels</strong></td>
|
||
<td>
|
||
optional; false</td>
|
||
<td>
|
||
if true and <strong>renderer</strong>=circular, render labels at an angle if needed to avoid overlap</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>horizspacing</strong></td>
|
||
<td>
|
||
optional; 7.0</td>
|
||
<td>
|
||
scale horizontal spacing between branches as a factor of node size</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>fontface</strong></td>
|
||
<td>
|
||
optional; default: “Helvetica”</td>
|
||
<td>
|
||
one of strings understood by CGlTextureFont::FaceFromString(), see <a href="/tools/treeviewer/parameters/#fontfacevalues">fontface <strong>values</strong></a></td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>fontsize</strong></td>
|
||
<td>
|
||
optional; 10</td>
|
||
<td>
|
||
in points</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>forcesquare</strong></td>
|
||
<td>
|
||
optional; false</td>
|
||
<td>
|
||
Set to true or false. If true, tree will be rendered to a square viewport. Useful only for circular layout mode to force a true circle rather than an ellipse.</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>nodesize</strong></td>
|
||
<td>
|
||
optional; 3px</td>
|
||
<td>
|
||
radius of a single (default-sized) node</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>linewidth</strong></td>
|
||
<td>
|
||
optional;1px</td>
|
||
<td>
|
||
width of the tree branch lines</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
|
||
|
||
<h2>
|
||
Tree node selection and ordering</h2>
|
||
|
||
|
||
<table border="2" cellpadding="2" cellspacing="2">
|
||
<tbody>
|
||
<tr>
|
||
<th>
|
||
<strong>param</strong></th>
|
||
<th>
|
||
<strong>default value</strong></th>
|
||
<th>
|
||
<strong>value description</strong></th>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>collapsednodeIDs</strong></td>
|
||
<td>
|
||
optional; empty</td>
|
||
<td>
|
||
if set, collapse the listed node IDs (and all nodes under them, so only the nodes closest to the root need to be listed)</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>collapsetoviewport</strong></td>
|
||
<td>
|
||
optional; false</td>
|
||
<td>
|
||
if true, collapses nodes (most distant first) so that tree will fit in(clientviewportwidth/height) at a resolution that allows labels to be drawn (any nodes collapsed in data source will first be expanded). nodes with property $PRIORITY>=1000 will not be collapsed</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>expandall</strong></td>
|
||
<td>
|
||
optional; false</td>
|
||
<td>
|
||
if true any nodes collapsed in the asn will be expanded</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>setmidpointroot</strong></td>
|
||
<td>
|
||
optional; false</td>
|
||
<td>
|
||
if true, tree is re-rooted using the midpoint algorthm</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>sort</strong></td>
|
||
<td>
|
||
<p>
|
||
optional; false</p>
|
||
<p>
|
||
options are: <strong>children</strong>, <strong>distance</strong>, <strong>labels</strong>, <strong>subtreelabels</strong></p>
|
||
</td>
|
||
<td>
|
||
if specified, sort children of each node in specified order</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>sortorder</strong></td>
|
||
<td>
|
||
<p>
|
||
optional; desc</p>
|
||
<p>
|
||
options are: <strong>asc</strong>, <strong>desc</strong></p>
|
||
</td>
|
||
<td>
|
||
When sort is specified, specifies whether nodes should be sorted in ascending or descending order</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>rootnodeID</strong></td>
|
||
<td>
|
||
optional; -1</td>
|
||
<td>
|
||
if not -1, re-root the tree at the specified node ID</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>selectednodeIDs</strong></td>
|
||
<td>
|
||
optional; empty</td>
|
||
<td>
|
||
comma-separated list of node ids to be shown as selected</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>deselectednodeIDs</strong></td>
|
||
<td>
|
||
optional; empty</td>
|
||
<td>
|
||
comma-separated list of node ids from the tree to be de-selected. nodes from selectednodeIDs are selected before nodes from deselectednodeIDs are deselected.</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>subtreenodeID</strong></td>
|
||
<td>
|
||
optional; -1</td>
|
||
<td>
|
||
if not -1, only a subtree starting from the node with this ID will be shown</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>neighborhoodnodeIDs</strong></td>
|
||
<td>
|
||
optional; empty</td>
|
||
<td>
|
||
Show nodes with the specified IDs as selected along with any other nodes that can be reached by recursively traversing connected branches up to a distance of <strong>neighborhooddist</strong>. The center and size of the selected nodes are also returned in the JSON struct <strong>neighborhood</strong> of <strong>TV_TreeImgDesc</strong></td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>neighborhooddist</strong></td>
|
||
<td>
|
||
<p>
|
||
optional; 0.0.</p>
|
||
<p>
|
||
required if <strong>neighborhoodnodeID</strong> is provided</p>
|
||
</td>
|
||
<td>
|
||
The maximum distance from <strong>neighborhoodnodeID</strong>, traversed recursively, for nodes to be included in the neighborhood selection set.</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>querynodeIDs</strong></td>
|
||
<td>
|
||
optional; empty</td>
|
||
<td>
|
||
list of node IDs for which we will return JSON data (even if nodes are collapsed)</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>query</strong></td>
|
||
<td>
|
||
optional; empty</td>
|
||
<td>
|
||
a valid query of the same format used in Genome Workbench. Nodes matching the query criteria will be rendered as selected and returned to the caller</td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>zoomtoquery</strong></td>
|
||
<td>
|
||
optional; false</td>
|
||
<td>
|
||
if true zoom in or out so that all of the selected nodes will fit in the client viewport (clientviportwidth/height)</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
|
||
|
||
<h2>
|
||
Test parameters</h2>
|
||
|
||
|
||
<table border="2" cellpadding="2" cellspacing="2">
|
||
<tbody>
|
||
<tr>
|
||
<th>
|
||
<em><strong>param</strong></em></th>
|
||
<th>
|
||
<em><strong>default value</strong></em></th>
|
||
<th>
|
||
<em><strong>value description</strong></em></th>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>test_delay</strong></td>
|
||
<td>
|
||
0</td>
|
||
<td>
|
||
delay in whole seconds before input starts to be processed, any value <0 or >60 will cause a delay of 60 seconds</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
|
||
|
||
<h2>
|
||
nc_fetch.cgi parameters</h2>
|
||
|
||
|
||
<table border="2" cellpadding="2" cellspacing="2">
|
||
<tbody>
|
||
<tr>
|
||
<th>
|
||
<em><strong>param</strong></em></th>
|
||
<th>
|
||
<em><strong>default value</strong></em></th>
|
||
<th>
|
||
<em><strong>value description</strong></em></th>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<strong>key</strong></td>
|
||
<td>
|
||
mandatory</td>
|
||
<td>
|
||
Netcache id of the generated image (obtained from <strong>img_key </strong>in the JSON return)</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
|
||
|
||
<h2 id="fontfacevalues">
|
||
fontface values</h2>
|
||
|
||
|
||
<p>
|
||
List of values allowable for <strong>fontface</strong> parameter can be found in <u><strong><a href="//www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/gui/opengl/gltexturefont.cpp "> http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/gui/opengl/gltexturefont.cpp </a></strong></u> (look for CGlTextureFont::s_FontNames). From a C++ application, they can be obtained by calling CGlTextureFont::GetAllFaces().</p>
|
||
|
||
</div>
|
||
<!--/.col1-->
|
||
<div class="col2">
|
||
<h2>
|
||
Table of Contents</h2><ul>
|
||
<li>
|
||
<a href="/tools/treeviewer/">Tree Viewer documentation home</a></li>
|
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<li>
|
||
<a href="/projects/treeview/">Tree Viewer application home</a></li>
|
||
<li>
|
||
For Users
|
||
<ul>
|
||
<li>
|
||
<a href="/tools/treeviewer/releasenotes">Release notes</a></li>
|
||
<li>
|
||
<a href="/tools/treeviewer/faq">Frequently asked questions</a></li>
|
||
<li>
|
||
<a href="/tools/treeviewer/videos">Videos</a></li>
|
||
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|
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|
||
<li>
|
||
User Tutorials
|
||
<ul>
|
||
<li>
|
||
<a href="/tools/treeviewer/tutorial-uud">User uploaded data</a></li>
|
||
<li>
|
||
<a href="/tools/treeviewer/tutorial-editlabels">Edit Labels Dialog</a></li>
|
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|
||
|
||
<li>
|
||
<a href="/tools/treeviewer/tutorial-search">Tree View Search</a></li>
|
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|
||
|
||
</ul>
|
||
</li>
|
||
<li>
|
||
For Developers
|
||
<ul>
|
||
<li>
|
||
<a href="/tools/treeviewer/embeddingapi">Embedding API manual</a></li>
|
||
<li>
|
||
<a href="/tools/treeviewer/macros">Tree Viewer Macros manual</a></li>
|
||
<li>
|
||
<a href="/tools/treeviewer/developerresources">Other Developer Resources</a></li>
|
||
</ul>
|
||
</li>
|
||
<li>
|
||
Related Resources
|
||
<ul>
|
||
<li>
|
||
<a href="/projects/sviewer/">Sequence Viewer</a></li>
|
||
<li>
|
||
<a href="/projects/msaviewer/">Multiple Sequence Alignment Viewer</a></li>
|
||
</ul>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
<!--/.col2-->
|
||
<div class="col3">
|
||
|
||
</div>
|
||
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|
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|
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|
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<div class="col5">
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</div>
|
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<div class="col6">
|
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|
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</div>
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<div class="col7">
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