728 lines
42 KiB
HTML
728 lines
42 KiB
HTML
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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<head><meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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<!-- AppResources meta begin -->
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<meta name="paf-app-resources" content="" />
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<meta xmlns:ncbi-portal="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" name="ncbi_app" content="sviewerdocs" /><meta xmlns:ncbi-portal="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" name="ncbi_pdid" content="sviewerdocs" />
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<title>URL Parameters</title>
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<!-- AppResources external_resources end -->
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<!-- Page headcontent begin -->
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<meta name="subsite" content="sequence-viewer" />
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<meta name="path" content="sequence-viewer/url_access" />
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<meta name="modified" content="2021-10-07T00:00:39Z" />
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<link type="text/css" rel="stylesheet" href="/core/assets/gbench/css/gbench-docs.css" /><meta xmlns:ncbi-portal="http://ncbi.gov/portal/XSLT/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" name="cms-edit-aux-url" content="http://cms.ncbi.nlm.nih.gov/node//edit" />
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<!-- Page headcontent end -->
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<link xmlns="http://www.w3.org/1999/xhtml" type="text/css" rel="stylesheet" href="//static.pubmed.gov/portal/portal3rc.fcgi/4218191/css/4207974/4206132.css" xml:base="http://127.0.0.1/sites/static/header_footer" />
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<link rel="shortcut icon" href="//www.ncbi.nlm.nih.gov/favicon.ico" /><meta name="ncbi_phid" content="CE8BF5D07C8C3D110000000000380030.m_5" /><script type="text/javascript"><!--
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--></script>
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<meta name='referrer' content='origin-when-cross-origin'/><link type="text/css" rel="stylesheet" href="//static.pubmed.gov/portal/portal3rc.fcgi/4201177/css/4121862/3974050/3917732/251717/4092826/3428953/14534/45193/3534283/4128070/3894326/4005757/2867781/3621797.css" /><link type="text/css" rel="stylesheet" href="//static.pubmed.gov/portal/portal3rc.fcgi/4201177/css/3529741/3529739.css" media="print" /><script type="text/javascript">
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var ObjectLinks=[{i:0, ename: "p$ExL", esid:"*", sname: "p$ExL", ssid:"*", dname:"p$el", dsid:"0",m:"CopyValue",p:[],f: function(src, dst) {fn_CopyValue(src, dst);}}]
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var ActiveNames = {"p$ExL":1};
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</script></head>
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<body class=" col2 sviewerdocs">
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<div class="grid">
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<div class="col twelve_col nomargin shadow">
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<!-- System messages like service outage or JS required; this is handled by the TemplateResources portlet -->
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<div class="sysmessages">
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<noscript>
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<p class="nojs">
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<strong>Warning:</strong>
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The NCBI web site requires JavaScript to function.
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<a href="/guide/browsers/#enablejs" title="Learn how to enable JavaScript" target="_blank">more...</a>
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</p>
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</noscript>
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</div>
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<!--/.sysmessage-->
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<div class="wrap">
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<div class="page">
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<div xmlns:xi="http://www.w3.org/2001/XInclude">
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<div xmlns="http://www.w3.org/1999/xhtml" id="universal_header" xml:base="http://127.0.0.1/sites/static/header_footer">
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<section class="usa-banner">
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<div class="usa-accordion">
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<header class="usa-banner-header">
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<div class="usa-grid usa-banner-inner">
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<img src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/favicons/favicon-57.png" alt="U.S. flag" />
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<p>An official website of the United States government</p>
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<button class="non-usa-accordion-button usa-banner-button" aria-expanded="false" aria-controls="gov-banner-top" type="button">
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<span class="usa-banner-button-text">Here's how you know</span>
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</button>
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</div>
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</header>
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<div class="usa-banner-content usa-grid usa-accordion-content" id="gov-banner-top" aria-hidden="true">
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<div class="usa-banner-guidance-gov usa-width-one-half">
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<img class="usa-banner-icon usa-media_block-img" src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/icon-dot-gov.svg" alt="Dot gov" />
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<div class="usa-media_block-body">
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<p>
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<strong>The .gov means it's official.</strong>
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<br />
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Federal government websites often end in .gov or .mil. Before
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sharing sensitive information, make sure you're on a federal
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government site.
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</p>
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</div>
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</div>
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<div class="usa-banner-guidance-ssl usa-width-one-half">
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<img class="usa-banner-icon usa-media_block-img" src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/icon-https.svg" alt="Https" />
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<div class="usa-media_block-body">
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<p>
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<strong>The site is secure.</strong>
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<br />
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The <strong>https://</strong> ensures that you are connecting to the
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official website and that any information you provide is encrypted
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and transmitted securely.
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</p>
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</div>
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</div>
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</div>
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</div>
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</section>
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<div class="usa-overlay"></div>
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<header class="ncbi-header" role="banner" data-section="Header">
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<div class="usa-grid">
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<div class="usa-width-one-whole">
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<div class="ncbi-header__logo">
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<a href="/" class="logo" aria-label="NCBI Logo" data-ga-action="click_image" data-ga-label="NIH NLM Logo">
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<img src="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/logos/AgencyLogo.svg" alt="NIH NLM Logo" />
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</a>
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</div>
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<div class="ncbi-header__account">
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<a id="account_login" href="https://account.ncbi.nlm.nih.gov" class="usa-button header-button" style="display:none" data-ga-action="open_menu" data-ga-label="account_menu">Log in</a>
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<button id="account_info" class="header-button" style="display:none" aria-controls="account_popup" type="button">
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<span class="fa fa-user" aria-hidden="true">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" width="20px" height="20px">
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<g style="fill: #fff">
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<ellipse cx="12" cy="8" rx="5" ry="6"></ellipse>
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<path d="M21.8,19.1c-0.9-1.8-2.6-3.3-4.8-4.2c-0.6-0.2-1.3-0.2-1.8,0.1c-1,0.6-2,0.9-3.2,0.9s-2.2-0.3-3.2-0.9 C8.3,14.8,7.6,14.7,7,15c-2.2,0.9-3.9,2.4-4.8,4.2C1.5,20.5,2.6,22,4.1,22h15.8C21.4,22,22.5,20.5,21.8,19.1z"></path>
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</g>
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</svg>
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</span>
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<span class="username desktop-only" aria-hidden="true" id="uname_short"></span>
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<span class="sr-only">Show account info</span>
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</button>
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</div>
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<div class="ncbi-popup-anchor">
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<div class="ncbi-popup account-popup" id="account_popup" aria-hidden="true">
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<div class="ncbi-popup-head">
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<button class="ncbi-close-button" data-ga-action="close_menu" data-ga-label="account_menu" type="button">
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<span class="fa fa-times">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 48 48" width="24px" height="24px">
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<path d="M38 12.83l-2.83-2.83-11.17 11.17-11.17-11.17-2.83 2.83 11.17 11.17-11.17 11.17 2.83 2.83 11.17-11.17 11.17 11.17 2.83-2.83-11.17-11.17z"></path>
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</svg>
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</span>
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<span class="usa-sr-only">Close</span></button>
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<h4>Account</h4>
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</div>
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<div class="account-user-info">
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Logged in as:<br />
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<b><span class="username" id="uname_long">username</span></b>
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</div>
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<div class="account-links">
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<ul class="usa-unstyled-list">
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<li><a id="account_myncbi" href="/myncbi/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_myncbi">Dashboard</a></li>
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<li><a id="account_pubs" href="/myncbi/collections/bibliography/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_pubs">Publications</a></li>
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<li><a id="account_settings" href="/account/settings/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_settings">Account settings</a></li>
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<li><a id="account_logout" href="/account/signout/" class="set-base-url" data-ga-action="click_menu_item" data-ga-label="account_logout">Log out</a></li>
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</ul>
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</div>
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</div>
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</div>
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</div>
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</div>
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</header>
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<div role="navigation" aria-label="access keys">
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<a id="nws_header_accesskey_0" href="https://www.ncbi.nlm.nih.gov/guide/browsers/#ncbi_accesskeys" class="usa-sr-only" accesskey="0" tabindex="-1">Access keys</a>
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<a id="nws_header_accesskey_1" href="https://www.ncbi.nlm.nih.gov" class="usa-sr-only" accesskey="1" tabindex="-1">NCBI Homepage</a>
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<a id="nws_header_accesskey_2" href="/myncbi/" class="set-base-url usa-sr-only" accesskey="2" tabindex="-1">MyNCBI Homepage</a>
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<a id="nws_header_accesskey_3" href="#maincontent" class="usa-sr-only" accesskey="3" tabindex="-1">Main Content</a>
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<a id="nws_header_accesskey_4" href="#" class="usa-sr-only" accesskey="4" tabindex="-1">Main Navigation</a>
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</div>
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<section data-section="Alerts">
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<div class="ncbi-alerts-placeholder"></div>
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</section>
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</div>
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</div>
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<!--/.header-->
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<div class="header">
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<div class="res_logo"><h1 class="res_name"><a href="/tools/sviewer/" title="NCBI Sequence Viewer home">NCBI Sequence Viewer</a></h1><h2 class="res_tagline"></h2></div>
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<form class="search_form" action="/gquery/" method="get">
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<label for="searchbarlite">Search NCBI </label>
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<input class="jig-ncbiclearbutton" type="text" size="40" id="searchbarlite" name="term" />
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<button type="submit" id="search" class="button_search">Search</button>
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<style type="text/css"></style>
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<input type="hidden" name="p$a" id="p$a" /><input type="hidden" name="p$l" id="p$l" value="PAFAppLayout" /><input type="hidden" name="p$st" id="p$st" value="tools" /><input name="SessionId" id="SessionId" value="CE8B5AF87C7FFCB1_0191SID" disabled="disabled" type="hidden" /><input name="Snapshot" id="Snapshot" value="/projects/staticsites/sviewer/sviewerdoc@1.22" disabled="disabled" type="hidden" /></form>
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</div>
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<div class="nav_and_browser">
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<div class="localnav"><ul data-section="nav-panel-top" class="jig-ncbilocalnav">
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<li> <a href="#">Sequence Viewer</a>
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<ul>
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<li><a href="/projects/sviewer/">Sequence Viewer application</a></li>
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</ul>
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</li>
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<li> <a href="#">General</a>
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<ul>
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<li><a href="/tools/sviewer/about/">About</a></li>
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<li><a href="/tools/sviewer/overview/">Getting started</a></li>
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<li><a href="/tools/sviewer/navigation/">Navigating the Sequence Viewer</a></li>
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<li><a href="/tools/sviewer/release-notes/">Release Notes</a></li>
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</ul>
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</li>
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<li> <a href="#">Help</a>
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<ul>
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<li><a href="/tools/sviewer/videos/">How-to Videos</a></li>
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<li><a href="/tools/sviewer/legends/">Graphical View Legend</a></li>
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<li><a href="/tools/sviewer/faq/">NCBI Track Sets FAQ</a></li>
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</ul>
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</li>
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<li> <a href="#">Interface</a>
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<ul>
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<li><a href="/tools/sviewer/configpanel/">Configure Tracks</a></li>
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<li><a href="/tools/sviewer/overviewpanel/">Overview Panel</a></li>
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<li><a href="/tools/sviewer/graphicalpanel/">Graphical Sequence Panel</a></li>
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<li><a href="/tools/sviewer/sequencepanel/">Sequence Text View</a></li>
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<li><a href="/tools/sviewer/tooltips/">Tooltips</a></li>
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</ul>
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</li>
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<li> <a href="#">Tutorials</a>
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<ul>
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<li><a href="/tools/sviewer/extdata/">Adding custom tracks</a></li>
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<li><a href="/tools/sviewer/markers/">Sequence Markers</a></li>
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<li><a href="/tools/sviewer/search/">Searching within the Sequence Viewer</a></li>
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<li><a href="/tools/sviewer/seqtrackdata/">Download Sequence and Track Data</a></li>
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<li><a href="/tools/sviewer/renderpdf/">Download PDF or SVG images</a></li>
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<li><a href="/tools/sviewer/mrnaproteindata/">Accessing RNA and protein sequence data</a></li>
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<li><a href="/tools/sviewer/translationdiscrepancies/">Displaying translation discrepancies</a></li>
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<li><a href="/tools/sviewer/manual-api/">Using Sequence Viewer Embedding API</a></li>
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</ul>
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</li>
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<li> <a href="#">Manuals</a>
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<ul>
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<li><a href="/tools/sviewer/embedding-api/">NCBI Sequence viewer embedding API</a></li>
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<li><a href="/tools/sviewer/url_access/">URL Parameters</a></li>
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</ul>
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</li>
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<li> <a href="#">Related Resources</a>
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<ul>
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<li><a href="/projects/treeview/">NCBI Tree Viewer</a></li>
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<li><a href="/projects/msaviewer/">NCBI Multiple Sequence Alignment Viewer</a></li>
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</ul>
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<li> <a href="#">Demo pages</a>
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<ul>
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<li><a target="_blank" href="/projects/sviewer/embedded.html">Embedding the NCBI Sequence View in Web Content</a></li>
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<li><a target="_blank" href="/projects/sviewer/MarkerDemo.html">Markers</a></li>
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<li><a target="_blank" href="/projects/sviewer/HGVSDemo.html">HGVS</a></li>
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<li><a target="_blank" href="/projects/sviewer/graphDemo.html">Graph overlay</a></li>
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<li><a target="_blank" href="/projects/sviewer/BAMDemo.html">BAM alignment visualization</a></li>
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<li><a target="_blank" href="/projects/sviewer/event_demo.html">Event listening</a></li>
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</ul>
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</li>
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</li></ul></div>
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</div>
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<!-- was itemctrl -->
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<div class="container">
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<div id="maincontent" class="content col twelve_col last">
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<div class="col1">
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<h2 id="url-parameters">URL Parameters</h2>
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<p>URLs for Sequence Viewer can be configured to customize the display. Sequence Viewer can also be embedded as a component in another web page.</p>
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<p><a href="/tools/sviewer/embedding-example/">Here</a> are examples of embedded instances of the Sequence Viewer.</p>
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<p>And <a href="/tools/sviewer/embedding-api/">here</a> is the full API manual for embedding. </p>
|
|
|
|
|
|
<p>For constructing URLs, use the baseURL is http://www.ncbi.nlm.nih.gov/nuccore/ <strong><INSERT GI HERE></strong> ?report=graph& <strong><List-of-arguments></strong></p>
|
|
|
|
|
|
<p>Arguments and argument qualifiers:</p>
|
|
|
|
|
|
<ol>
|
|
<li>
|
|
<p><strong>mk=<position or range>|<marker name>|<color in RGB hex></strong> Use the <strong>mk</strong> parameter to set a marker at a position or on a range of positions. Multiple markers can be set by separating the triples with a comma. Use an exclamation point ("!") after a triple to lock the marker. And the name and color parameters are optional.
|
|
Examples:</p>
|
|
<ul>
|
|
<li><strong>mk=1000</strong> puts an unlocked marker with default color and name at position 1000</li>
|
|
<li><strong>mk=1000:2000</strong> puts an unlocked marker with default color and name on the range 1000-2000</li>
|
|
<li><strong>mk=1000:2000|TestMarker</strong> puts an unlocked marker with default color and the name "TestMarker" on the range 1000-2000</li>
|
|
<li><strong>mk=1000:2000|TestMarker|00ff00</strong> puts an unlocked marker with color 0x00ff00 and the name "TestMarker" on the range 1000-2000</li>
|
|
<li><strong>mk=1000:2000|TestMarker|00ff00,3000:4000|TestMarker2|80ff10</strong> puts an unlocked marker with color 0x00ff00 and the name "TestMarker" on the range 1000-2000 and another unlocked marker with color 0x80ff10 and the name "TestMarker2" on the range 3000-4000.</li>
|
|
<li><strong>mk=1000:2000|TestMarker|00ff00,3000:4000|TestMarker2|80ff10!</strong> - same as above with a lock on "TestMarker2" .</li>
|
|
<li>Note: Special characters in marker names must be escaped properly usually with a \ prepended.</li>
|
|
</ul>
|
|
</li>
|
|
<li>
|
|
<p><strong>toolbar=<nspztcrh></strong> A set of switches that let you include/exclude particular options the toolbar. They're all present by default and as soon as one is specified, then you must opt in for all the choices.</p>
|
|
<ul>
|
|
<li>n - Name button</li>
|
|
<li>s - Search field</li>
|
|
<li>p - Panning buttons</li>
|
|
<li>z - Zoom slider & buttons</li>
|
|
<li>t - Tools menu</li>
|
|
<li>c - Configure menu</li>
|
|
<li>r - Reload button</li>
|
|
<li>h - Help button</li>
|
|
</ul>
|
|
</li>
|
|
<li>
|
|
<p><strong>embedded=panorama</strong> Shows only the top panel, the Overview panel, when used in the embedded model.</p>
|
|
</li>
|
|
<li><strong>origin=<sequence position></strong> - Set the sequence origin (Example: origin=5000)</li>
|
|
<li><strong>v=<view ranges></strong> - Set a specified visible range to a graphical panel (Example: v=1000:6000,100k:2m, 100K-2M, 100k..2M)</li>
|
|
<li><strong>c=<colors list></strong> - Set a specified color to a graphical panel (Example: c=0000FF,FFFF99)</li>
|
|
<li><strong>rid=<BLAST RID></strong> - Option to load BLAST results stored as an RID</li>
|
|
<li>
|
|
<p><strong>theme=<theme list></strong> - Set graphical display to a specific theme as a set of options in the order below(Example: theme=Default)</p>
|
|
<ul>
|
|
<li>Parameter Order - {color, decor, content, layout, spacing, label, geneModel}</li>
|
|
<li>0 - Compact - {0,0,1,0,1,0,2}</li>
|
|
<li>1 - Default - {0,0,1,0,0,0,1}</li>
|
|
<li>2 - Expanded - {0,0,1,0,2,0,0}</li>
|
|
<li>3 - Details< - {0,0,1,0,0,1,0}</li>
|
|
<li>4 - Fancy - {0,2,1,0,2,1,0}</li>
|
|
</ul>
|
|
</li>
|
|
<li>
|
|
<p><strong>content=<content list></strong> - Set graphical display content (Example: content=0)</p>
|
|
<ul>
|
|
<li>0 - Defaults</li>
|
|
<li>1 - Details</li>
|
|
<li>2 - Assembly Details</li>
|
|
<li>3 - Everything</li>
|
|
<li>4 - Genes</li>
|
|
<li>5 - Genes and SNPs</li>
|
|
<li>6 - Genes and Proteins</li>
|
|
<li>7 - Overview</li>
|
|
</ul>
|
|
</li>
|
|
<li>
|
|
<p><strong>color=<color list></strong> - Set graphical display color style (Example: color=0)</p>
|
|
<ul>
|
|
<li>0 - Color</li>
|
|
<li>1 - Greyscale</li>
|
|
<li>2 - High Contrast</li>
|
|
</ul>
|
|
</li>
|
|
<li>
|
|
<p><strong>decor=<decor list></strong> - Set graphical display decor (Example: decor=0)</p>
|
|
<ul>
|
|
<li>0 - Default</li>
|
|
<li>1 - Arrows</li>
|
|
<li>2 - CircleAnchor</li>
|
|
<li>3 - Fancy</li>
|
|
<li>4 - SquareAnchor</li>
|
|
</ul>
|
|
</li>
|
|
<li>
|
|
<p><strong>layout=<layout list></strong> - Set graphical display layout (Example: layout=0)</p>
|
|
<ul>
|
|
<li>0 - Defaults</li>
|
|
<li>1 - Level 1</li>
|
|
<li>2 - Level 2</li>
|
|
<li>3 - Level 3</li>
|
|
<li>4 - Multi Level</li>
|
|
</ul>
|
|
</li>
|
|
<li>
|
|
<p><strong>spacing=<spacing list></strong> - Set graphical display spacing (Example: spacing=0)</p>
|
|
<ul>
|
|
<li>0 - Normal</li>
|
|
<li>1 - Compact</li>
|
|
<li>2 - Oversize</li>
|
|
<li>3 - Overview</li>
|
|
</ul>
|
|
</li>
|
|
<li>
|
|
<p><strong>label=<label position></strong> - Set label position (Example: label=0)</p>
|
|
<ul>
|
|
<li>0 - Default (side)</li>
|
|
<li>1 - Top</li>
|
|
<li>2 - None</li>
|
|
</ul>
|
|
</li>
|
|
<li>
|
|
<p><strong>geneModel=<MergeStyle></strong> - Set gene merge style (Example: geneModel=0)</p>
|
|
<ul>
|
|
<li>0 - No Merge</li>
|
|
<li>1 - Merge Pairs</li>
|
|
<li>2 - Merge All</li>
|
|
</ul>
|
|
</li>
|
|
<li>
|
|
<p><strong>alncolor=<on/off list></strong> - Enables alignment coloration in the graphical display (Example: alncolor=on,off)</p>
|
|
</li>
|
|
<li><strong>flip=true</strong> - Flips the strand (Example: flip=true or flip=false,true to flip strand in the second graphical panel)</li>
|
|
<li><strong>select=<feature ids></strong> - Brings up a Marker Dialog (Example: select=00142d2b-000000c8-00000a44-0103-a209ee38)</li>
|
|
<li><strong>seq=from:to</strong> - Brings up a Sequence Text window (Example: seq=2000:7000)</li>
|
|
<li><strong>search=<search term></strong> - Brings up a Search Dialog (Example: search=GEN*)</li>
|
|
<li><strong>vm=true</strong> - Brings up a Marker Dialog (Example: vm=true)</li>
|
|
<li><strong>naa=<accession list></strong> - Option to load external named annotations (Example: naa=NA000000003,NA000000004,NA000000004:renderer_name)</li>
|
|
<li><strong>key=<NetCache key></strong> - Option to load external data from the NetCache</li>
|
|
<li><strong>URL=<URL to an external file></strong> - Option to load external data from a publicly accessible site (see <a href="/tools/sviewer/extdata/">Load External Data</a> )</li>
|
|
<li><strong>DEPRECATED</strong> <strong>from=<sequence position>&to=<sequence position></strong> - Set a specified visible range to a graphical panel. (Example: from=1000&to=8000)</li>
|
|
<li><strong>DEPRECATED in version 2.7</strong>
|
|
<strong>m=<markers positions></strong> - Set markers to specified positions (Example: m=1000,25000). An exclamation point ("!") after the marker position will make it locked.</li>
|
|
<li><strong>DEPRECATED in version 2.7</strong>
|
|
<strong>mn=<markers names></strong> - Set names for the markers (Example: mn=Marker 1,SNP #1)</li>
|
|
</ol>
|
|
|
|
|
|
</div>
|
|
<!--/.col1-->
|
|
<div class="col2">
|
|
<div>
|
|
<h2 id="table-of-contents">Table of Contents</h2>
|
|
<ul data-section="TOC-DOC-CLICK">
|
|
<li><a href="/projects/sviewer/">Sequence Viewer application</a></li>
|
|
<li><a href="/tools/sviewer/">Documentation Home</a></li>
|
|
<li>General
|
|
<ul>
|
|
<li><a href="/tools/sviewer/about/">About</a></li>
|
|
<li><a href="/tools/sviewer/overview/">Getting started</a></li>
|
|
<li><a href="/tools/sviewer/navigation/">Navigating the Sequence Viewer</a></li>
|
|
<li><a href="/tools/sviewer/release-notes/">Release Notes</a></li>
|
|
</ul>
|
|
</li>
|
|
<li>Help
|
|
<ul>
|
|
<li><a href="/tools/sviewer/videos/">How-to Videos</a></li>
|
|
<li><a href="/tools/sviewer/legends/">Graphical View Legend</a></li>
|
|
<li><a href="/tools/sviewer/faq/">NCBI Track Sets FAQ</a></li>
|
|
</ul>
|
|
</li>
|
|
<li>Interface
|
|
<ul>
|
|
<li><a href="/tools/sviewer/configpanel/">Configure Tracks</a></li>
|
|
<li><a href="/tools/sviewer/overviewpanel/">Overview Panel</a></li>
|
|
<li><a href="/tools/sviewer/graphicalpanel/">Graphical Sequence Panel</a></li>
|
|
<li><a href="/tools/sviewer/sequencepanel/">Sequence Text View</a></li>
|
|
<li><a href="/tools/sviewer/tooltips/">Tooltips</a></li>
|
|
</ul>
|
|
</li>
|
|
<li>Tutorials
|
|
<ul>
|
|
<li><a href="/tools/sviewer/extdata/">Adding custom tracks</a></li>
|
|
<li><a href="/tools/sviewer/markers/">Sequence Markers</a></li>
|
|
<li><a href="/tools/sviewer/search/">Searching within the Sequence Viewer</a></li>
|
|
|
|
|
|
<li><a href="/tools/sviewer/seqtrackdata/">Download Sequence and Track Data</a></li>
|
|
<li><a href="/tools/sviewer/renderpdf/">Download PDF or SVG images</a></li>
|
|
<li><a href="/tools/sviewer/mrnaproteindata/">Accessing RNA and protein sequence data</a></li>
|
|
<li><a href="/tools/sviewer/translationdiscrepancies/">Displaying translation discrepancies</a></li>
|
|
<li><a href="/tools/sviewer/manual-api/">Using Sequence Viewer Embedding API</a></li>
|
|
</ul>
|
|
</li>
|
|
<li>Manuals
|
|
<ul>
|
|
<li><a href="/tools/sviewer/embedding-api/">Sequence viewer embedding API</a></li>
|
|
<li><a href="/tools/sviewer/url_access/">URL Parameters</a></li>
|
|
</ul>
|
|
</li>
|
|
<li>Demo pages
|
|
<ul>
|
|
<li><a href="/projects/sviewer/embedded.html">Embedding the NCBI Sequence View in Web
|
|
Content</a></li>
|
|
<li><a href="/projects/sviewer/MarkerDemo.html">Markers</a></li>
|
|
<li><a href="/projects/sviewer/HGVSDemo.html">HGVS</a></li>
|
|
<li><a href="/projects/sviewer/graphDemo.html">Graph overlay</a></li>
|
|
<li><a href="/projects/sviewer/BAMDemo.html">BAM alignment visualization</a></li>
|
|
<li><a href="/projects/sviewer/event_demo.html">Event listening</a></li>
|
|
</ul>
|
|
</li>
|
|
<li>Related Resources
|
|
<ul>
|
|
<li><a href="/projects/treeview/">NCBI Tree Viewer</a></li>
|
|
<li><a href="/projects/msaviewer/">NCBI Multiple Sequence Alignment Viewer</a></li>
|
|
</ul>
|
|
</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
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<!--/.col2-->
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