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135 lines
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<title>4V86: Structure-function Analysis of Receptor-binding in Adeno-Associated Virus Serotype 6 (AAV-6)</title>
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<table cellspacing="0" id="mmdb_logo_links" cellpadding="0" width="100%"><tr><td><a class="ncbi_home_logo" href="/" alt="NBI HOME Logo">NCBI</a><div class="NLMLogo">National Center for<br/>Biotechnology Information</div></td><td class="titletext" align="left"><!--a href="/Structure/MMDB/mmdb.shtml"--><img border=0 src="/Structure/MMDB/strbanner.jpg" alt="4V86 - NCBI MMDB Logo"><!--/a--></td><td style="padding-bottom:1em;vertical-align:bottom"><form id="mmdbsearch" method="get" name="mmdbsearch" action="/Structure/pdb/" style="margin:0;padding:0;vertical-align: bottom;"><div class="mmdb-search-holder" style="height:100%;line-height:100%"><input accesskey="S" id="mmdb-search-box" type="search" name="uid" placeholder="Enter PDB ID or MMDB ID" value = "" aria-describedby="mmdb-search-uid" title="Enter PDB ID or MMDB ID"><button id="mmdb-search-button" class="__button mmdb-search-button" style="height:100%;line-height:100%;margin-right:-3px;" type="submit">Search</button></div></form></td></tr></table>
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<section data-section="infor" id="structure-infor-section"><h1 class="structure-title" data-mmdbid="171070" data-pdbid="4V86" id="structure-title"><a class="link title-pdbid" href="http://www.rcsb.org/pdb/explore/explore.do?structureId=4V86" style="font-weight:600;margin:0;">4V86: </a><span>Structure-function Analysis of Receptor-binding in Adeno-Associated Virus Serotype 6 (AAV-6)</span></h1>
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<div class="floatClear" id="infor-detail"><div class="reference_section" data-pmids="21917284" id="reference-section"></div>
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<div class="property_section"><form action="/Structure/mmdb/mmdbsrv.cgi" method="post" id="reloadform" name="reloadform" style="margin:0;padding:0"><input type="hidden" name="uid" value="171070"/></form><table border="0" cellpadding="4" cellspacing="4"><tr><td class="H4 pdbid-download">PDB ID: </td>
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<td><a id="pdb_id_link" class="link" href="http://www.rcsb.org/pdb/explore/explore.do?structureId=4V86" title="PDB ID">4V86</a><a id="download-pdb-file" class="__button" tabindex="-1" href="https://files.rcsb.org/download/4V86.pdb" title="Download PDB file" download="4V86.pdb">Download</a><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvStructureViewDataSetPDBdataset" title="-click to see help"></a></td>
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<tr><td class="H4 property-name">MMDB ID: </td>
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<td style="font-weight:bold"><span class="info-item">171070</span> <a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvRecordIdentifiers" title="-click to see help"></a></td>
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</tr>
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<tr><td class="H4 property-name">PDB Deposition Date: </td>
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<td><span id="depositionterm" style="padding-left: 0.2em;">2011/9/13<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvDeposited" title="-click to see help"></a></span></td>
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</tr>
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<tr><td class="H4 property-name">Updated in MMDB: </td>
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<td class="text" nowrap><span id="mmdb_updated" style="padding-left:0.2em">2020/08</span><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvUpdatedInMMDB" title="-click to see help"></a></td>
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</tr>
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<tr><td class="H4 property-name">Experimental Method: </td>
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<td class="TEXT" nowrap><div id="expmethod"><span title="x-ray diffraction" class="info-item">x-ray diffraction</span> <a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvExperimentalMethod" title="-click to see help"></a></div></td>
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<tr><td class="H4 property-name">Resolution: </td>
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<td class="TEXT" id="resolution" nowrap>3.003 Å<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#SearchFieldResolution" title="-click to see help"></a></td>
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<tr><td class="H4 property-name">Source Organism: </td>
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<td class="text"><div id="taxonomy"><a id="taxword" class="link" href="//www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=68558" title="Adeno-associated virus - 6">Adeno-associated virus - 6</a><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvTaxonomy" title="-click to see help"></a></div></td>
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<tr><td class="H4 property-name">Similar Structures: </td>
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<td><div id="vast-button-holder" style="width:100%;overflow:hidden;"><button class="__button" id="vast_button" type="submit">VAST+</button>
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<a class="help-img" href="/Structure/vastplus/docs/vastplus_help.html" title="-click to see help"></a></div></td>
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<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvDownaloadSequenceMMDB" title="-click to see help"></a></td></tr>
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<!-- start annotations -->
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<div align="center" id="annotblock" style="margin-top:0.8em;"><div class="formbox" id="asublock"><div id="asublock"><style>.unitschema-0{
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background-image:url("/Structure/mmdb/mmdbimage.fcgi?uid=171070&type=2&unm=0");
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}</style><section class="graph-section" data-section="graph" id="biounit-section-0"></section>
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<section class="content_block" data-section="table"><table border="1" class="bucontent"><caption class="butbl_caption">Molecular Components in 4V86<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvMolecularComponents" title="-click to see help"></a></caption>
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<thead><tr><th>Label</th>
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<th>Count</th>
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<th>Molecule</th>
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</tr></thead>
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<tbody data-bun="0" data-type="protein" id="unit0_protein_annotation"><tr><td class="butbl_inner_tbl_tit" colspan="3"><div style="float:left">Proteins (60 molecules)</div></td></tr>
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<tr data-row="0"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-0-1"><a href="//www.ncbi.nlm.nih.gov/protein/4V86_A" id="mol-legend-0-1" class="protein-molecule-label-1" data-gi="1890523529" data-molid="1" style="color:#FFFFFF;background-color:#FF00FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">A</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_B" id="mol-legend-0-2" class="protein-molecule-label-1" data-gi="1890523530" data-molid="2" style="color:#FFFFFF;background-color:#0000FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">B</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_C" id="mol-legend-0-3" class="protein-molecule-label-1" data-gi="1890523531" data-molid="3" style="color:#FFFFFF;background-color:#996633" title="-Select icon for molecule information"><div class="protein-table-chain-label">C</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_D" id="mol-legend-0-4" class="protein-molecule-label-1" data-gi="1890523532" data-molid="4" style="color:#000000;background-color:#00FF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">D</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_E" id="mol-legend-0-5" class="protein-molecule-label-1" data-gi="1890523533" data-molid="5" style="color:#000000;background-color:#CCCCCC" title="-Select icon for molecule information"><div class="protein-table-chain-label">E</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_F" id="mol-legend-0-6" class="protein-molecule-label-1" data-gi="1890523534" data-molid="6" style="color:#000000;background-color:#FF9900" title="-Select icon for molecule information"><div class="protein-table-chain-label">F</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_G" id="mol-legend-0-7" class="protein-molecule-label-1" data-gi="1890523535" data-molid="7" style="color:#000000;background-color:#FF6666" title="-Select icon for molecule information"><div class="protein-table-chain-label">G</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_H" id="mol-legend-0-8" class="protein-molecule-label-1" data-gi="1890523536" data-molid="8" style="color:#000000;background-color:#00FF00" title="-Select icon for molecule information"><div class="protein-table-chain-label">H</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_I" id="mol-legend-0-9" class="protein-molecule-label-1" data-gi="1890523537" data-molid="9" style="color:#000000;background-color:#00FFFF" title="-Select icon for molecule information"><div class="protein-table-chain-label">I</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_J" id="mol-legend-0-10" class="protein-molecule-label-1" data-gi="1890523538" data-molid="10" style="color:#000000;background-color:#FFFF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">J</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_K" id="mol-legend-0-11" class="protein-molecule-label-1" data-gi="1890523539" data-molid="11" style="color:#FFFFFF;background-color:#FF00FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">K</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_L" id="mol-legend-0-12" class="protein-molecule-label-1" data-gi="1890523540" data-molid="12" style="color:#FFFFFF;background-color:#0000FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">L</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_M" id="mol-legend-0-13" class="protein-molecule-label-1" data-gi="1890523541" data-molid="13" style="color:#FFFFFF;background-color:#996633" title="-Select icon for molecule information"><div class="protein-table-chain-label">M</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_N" id="mol-legend-0-14" class="protein-molecule-label-1" data-gi="1890523542" data-molid="14" style="color:#000000;background-color:#00FF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">N</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_O" id="mol-legend-0-15" class="protein-molecule-label-1" data-gi="1890523543" data-molid="15" style="color:#000000;background-color:#CCCCCC" title="-Select icon for molecule information"><div class="protein-table-chain-label">O</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_P" id="mol-legend-0-16" class="protein-molecule-label-1" data-gi="1890523544" data-molid="16" style="color:#000000;background-color:#FF9900" title="-Select icon for molecule information"><div class="protein-table-chain-label">P</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_Q" id="mol-legend-0-17" class="protein-molecule-label-1" data-gi="1890523545" data-molid="17" style="color:#000000;background-color:#FF6666" title="-Select icon for molecule information"><div class="protein-table-chain-label">Q</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_R" id="mol-legend-0-18" class="protein-molecule-label-1" data-gi="1890523546" data-molid="18" style="color:#000000;background-color:#00FF00" title="-Select icon for molecule information"><div class="protein-table-chain-label">R</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_S" id="mol-legend-0-19" class="protein-molecule-label-1" data-gi="1890523547" data-molid="19" style="color:#000000;background-color:#00FFFF" title="-Select icon for molecule information"><div class="protein-table-chain-label">S</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_T" id="mol-legend-0-20" class="protein-molecule-label-1" data-gi="1890523548" data-molid="20" style="color:#000000;background-color:#FFFF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">T</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_U" id="mol-legend-0-21" class="protein-molecule-label-1" data-gi="1890523549" data-molid="21" style="color:#FFFFFF;background-color:#FF00FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">U</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_V" id="mol-legend-0-22" class="protein-molecule-label-1" data-gi="1890523550" data-molid="22" style="color:#FFFFFF;background-color:#0000FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">V</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_W" id="mol-legend-0-23" class="protein-molecule-label-1" data-gi="1890523551" data-molid="23" style="color:#FFFFFF;background-color:#996633" title="-Select icon for molecule information"><div class="protein-table-chain-label">W</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_X" id="mol-legend-0-24" class="protein-molecule-label-1" data-gi="1890523552" data-molid="24" style="color:#000000;background-color:#00FF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">X</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_Y" id="mol-legend-0-25" class="protein-molecule-label-1" data-gi="1890523553" data-molid="25" style="color:#000000;background-color:#CCCCCC" title="-Select icon for molecule information"><div class="protein-table-chain-label">Y</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_Z" id="mol-legend-0-26" class="protein-molecule-label-1" data-gi="1890523554" data-molid="26" style="color:#000000;background-color:#FF9900" title="-Select icon for molecule information"><div class="protein-table-chain-label">Z</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_a" id="mol-legend-0-27" class="protein-molecule-label-1" data-gi="1938949641" data-molid="27" style="color:#000000;background-color:#FF6666" title="-Select icon for molecule information"><div class="protein-table-chain-label">a</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_b" id="mol-legend-0-28" class="protein-molecule-label-1" data-gi="1938949642" data-molid="28" style="color:#000000;background-color:#00FF00" title="-Select icon for molecule information"><div class="protein-table-chain-label">b</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_c" id="mol-legend-0-29" class="protein-molecule-label-1" data-gi="1938949643" data-molid="29" style="color:#000000;background-color:#00FFFF" title="-Select icon for molecule information"><div class="protein-table-chain-label">c</div></a><a href="//www.ncbi.nlm.nih.gov/protein/4V86_d" id="mol-legend-0-30" class="protein-molecule-label-1" data-gi="1938949644" data-molid="30" style="color:#000000;background-color:#FFFF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">d</div></a></div>
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<div class="identical-molecules ellipsis-horizontal floatClear">…</div>
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</td>
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<td>60</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Capsid Protein VP1">Capsid Protein VP1</div>
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<div class="annot-img-block" data-bun="0" data-gmolid="1" data-molids="1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30" id="molgraph-p-0-1"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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</tbody>
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</table>
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<div style="margin:0.5em 1em;text-align:left; font-size:85%;">* Click molecule labels to explore molecular sequence information.<br/></div>
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</section>
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</div></div></div>
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<!-- end annotations -->
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</table>
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<div align="left" class="citing"><hr width="85%"/><div style="font-weight:bold">Citing MMDB</div><div class="citref" style="padding:0.2em;"><img style="border:0;text-align:left;height:15px;width:15px;margin-right:0.2em" src="//pubchem.ncbi.nlm.nih.gov/images/PubMed.gif"> <span style="color:#444"> Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. </span> <cite><a class="link" href="//www.ncbi.nlm.nih.gov/pubmed/24319143">"<span style="font-style:italic;"> MMDB and VAST+: tracking structural similarities between macromolecular complexes. <b style="font-size:90%">Nucleic Acids Res. 2014 Jan; 42(Database issue)</b>:D297-303</span></a></cite></div></div>
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