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<h1><a data-section="Header" data-ga-action="Click-on"
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data-ga-label="dbSNP Short Genetic Variations"
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ref="section=Header&action=Click-on&label=dbSNP Short Genetic Variations"
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href="/snp/">dbSNP</a>
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<span class="uswds-gray tagline">Short Genetic Variations</span>
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</h1>
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<h3 class="usa-alert-heading">Welcome to the Reference SNP (rs) Report</h3>
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<p class="usa-alert-text">All alleles are reported in the <a href="https://www.ncbi.nlm.nih.gov/core/assets/snp/docs/RefSNP_orientation_updates.pdf" target="_blank"
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data-ga-action="Click for forward orientation" data-ga-category="Info panel"
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data-ga-label="Forward orientation">Variant Details tab</a> for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the
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<h3>Reference SNP (rs) Report</h3>
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</div>
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<div class="usa-width-one-half">
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<ul class="utilities usa-unstyled-list align-right">
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<li title="Download in API JSON format"><a href="https://api.ncbi.nlm.nih.gov/variation/v0/refsnp/333"
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data-section="Main" data-ga-action="Click-on" data-ga-label="main_download_btn"
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class="fa fa-question-circle ncbiPopper" id="mainhelp_tooltip"
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ref="section=Main&action=Click-on-Tooltip&label=main_tp"><span class="usa-sr-only">Help</span></a>
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<p id="main_tp">
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This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.<br/>
|
||
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.<br/>
|
||
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors. <br/>
|
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For more information see <a class="external-link" href="/snp/docs/refsnp_report/helpdoc"> Help documentation</a>.</p>
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<div class="usa-grid-full clearfix">
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<div class="usa-width-two-thirds">
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<div class="blue-box">
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<h2 id="refsnp_id">rs333</h2>
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</div>
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</div>
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<div class="accession usa-width-one-third">
|
||
<p>Current Build <span>157</span></p>
|
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<p>Released <span>
|
||
|
||
September 3, 2024
|
||
|
||
</span></p>
|
||
</div>
|
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</div>
|
||
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|
||
|
||
<div class="summary-box usa-grid-full">
|
||
<dl class="usa-width-one-half">
|
||
|
||
<dt>Organism</dt>
|
||
<dd class="species_name">Homo sapiens</dd>
|
||
|
||
|
||
|
||
|
||
<dt>Position</dt>
|
||
<dd>
|
||
|
||
<span>chr3:46373453-46373487 </span><span>(GRCh38.p14) </span><a data-width="640px" href="#pos_tp"
|
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ref="section=Summary&action=Click-on-Tooltip&label=pos_tp"
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data-section="Summary" data-ga-action="Click-on-Tooltip"
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data-ga-label="pos_tp" class="fa fa-question-circle ncbiPopper" id="position_tooltip"><span class="usa-sr-only">Help</span></a><p id="pos_tp">The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See <a href="/snp/docs/refsnp_report/helpdoc/">here</a> for details.</p>
|
||
|
||
|
||
</dd>
|
||
|
||
|
||
|
||
<dt>Alleles</dt>
|
||
<dd>
|
||
|
||
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA
|
||
|
||
</dd>
|
||
|
||
|
||
|
||
|
||
<dt>Variation Type</dt>
|
||
<dd>
|
||
|
||
Indel
|
||
|
||
|
||
|
||
<span class="small-font gray">Insertion and Deletion</span>
|
||
|
||
</dd>
|
||
|
||
|
||
|
||
<dt>Frequency</dt>
|
||
<dd>
|
||
|
||
<div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.1009875
|
||
(141516/1401322, GnomAD_exomes)
|
||
</div><div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.071408
|
||
(10649/149128, GnomAD_genomes)
|
||
</div><span>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.072628 (8805/121234, ExAC)
|
||
</span><span>(<a id="expandfrequency" data-freq-remn="12"
|
||
data-is-icon="false" data-section="Summary" data-ga-action="Click-on"
|
||
data-ga-label="Frequency" data-targets="#remn_summ_freq" href="#remn_summ_freq"
|
||
ref="section=Summary&action=Click-on&label=Frequency">+ 12 more</a>)</span><div class="ui-widget hide_elm" id="remn_summ_freq"><div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.02465
|
||
(1940/78694, PAGE_STUDY)
|
||
</div><div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.00005
|
||
(4/77444, 38KJPN)
|
||
</div><div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.09286
|
||
(2358/25394, ALFA)
|
||
</div><div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.06043
|
||
(755/12494, GO-ESP)
|
||
</div><div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0294
|
||
(188/6404, 1000G_30X)
|
||
</div><div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0292
|
||
(146/5008, 1000G)
|
||
</div><div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.1179
|
||
(528/4480, Estonian)
|
||
</div><div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0937
|
||
(361/3854, ALSPAC)
|
||
</div><div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0742
|
||
(275/3708, TWINSUK)
|
||
</div><div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.107
|
||
(64/600, NorthernSweden)
|
||
</div><div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.005
|
||
(1/216, Vietnamese)
|
||
</div><div>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.25
|
||
(10/40, GENOME_DK)
|
||
</div></div>
|
||
|
||
</dd>
|
||
|
||
</dl>
|
||
<dl class="usa-width-one-half">
|
||
|
||
<dt>Clinical Significance</dt>
|
||
<dd>
|
||
|
||
Reported in <a target="_blank" data-section="Summary" data-ga-action="Click-on"
|
||
data-ga-label="Reported in ClinVar"
|
||
ref="section=Summary&action=Click-on&label=Reported in ClinVar"
|
||
href="/clinvar?term=((23223[AlleleID]))">ClinVar</a>
|
||
|
||
</dd>
|
||
|
||
|
||
|
||
<dt>Gene : Consequence</dt>
|
||
<dd>
|
||
|
||
<div>CCR5 : Frameshift Variant</div><span>CCR5AS : Intron Variant</span>
|
||
|
||
</dd>
|
||
|
||
<dt>Publications</dt>
|
||
<dd>
|
||
|
||
<a id="snp_pub_count" href="#publications">108
|
||
citations
|
||
</a>
|
||
|
||
</dd>
|
||
|
||
|
||
<dt>Genomic View</dt>
|
||
<dd>
|
||
<a href="#seq_hash" data-section="Summary" data-ga-action="Click-on"
|
||
data-ga-label="Genomic View See rs on genome"
|
||
ref="section=Summary&action=Click-on&label=Genomic View See rs on genome">See rs on
|
||
genome</a>
|
||
</dd>
|
||
|
||
</dl>
|
||
</div>
|
||
|
||
|
||
|
||
<div class="js-tabs">
|
||
<ul class="js-tablist" data-section="Tab">
|
||
|
||
<li class="js-tablist__item">
|
||
<a href="#frequency_tab" ref="section=Tab&action=Click-on&label=Frequency"
|
||
data-ga-action="Click-on-horizontal" data-ga-label="Frequency" id="label_id_third"
|
||
class="js-tablist__link">Frequency
|
||
<span aria-hidden="true"></span></a>
|
||
</li>
|
||
|
||
<li class="js-tablist__item">
|
||
<a href="#variant_details" ref="section=Tab&action=Click-on&label=Variant Details"
|
||
data-ga-action="Click-on-horizontal" data-ga-label="Variant Details" id="label_id_first"
|
||
class="js-tablist__link">Variant Details
|
||
<span class="js-tablist__item-has-focus" aria-hidden="true"></span></a>
|
||
</li>
|
||
<li class="js-tablist__item">
|
||
<a href="#clinical_significance"
|
||
ref="section=Tab&action=Click-on&label=Clinical Significance"
|
||
data-ga-action="Click-on-horizontal" data-ga-label="Clinical Significance" id="label_id_second"
|
||
class="js-tablist__link">Clinical
|
||
Significance
|
||
<span aria-hidden="true"></span></a>
|
||
</li>
|
||
<li class="js-tablist__item">
|
||
<a href="#hgvs_tab" ref="section=Tab&action=Click-on&label=HGVS"
|
||
data-ga-action="Click-on-horizontal" data-ga-label="HGVS" id="label_id_fourth"
|
||
class="js-tablist__link">HGVS
|
||
<span aria-hidden="true"></span></a>
|
||
</li>
|
||
<li class="js-tablist__item">
|
||
<a href="#submissions" ref="section=Tab&action=Click-on&label=Submissions"
|
||
data-ga-action="Click-on-horizontal" data-ga-label="Submissions" id="label_id_fifth"
|
||
class="js-tablist__link">Submissions
|
||
<span aria-hidden="true"></span></a>
|
||
</li>
|
||
<li class="js-tablist__item">
|
||
<a href="#history" ref="section=Tab&action=Click-on&label=History"
|
||
data-ga-action="Click-on-horizontal" data-ga-label="History" id="label_id_sixth"
|
||
class="js-tablist__link">History
|
||
<span aria-hidden="true"></span></a>
|
||
</li>
|
||
<li class="js-tablist__item">
|
||
<a href="#publications" ref="section=Tab&action=Click-on&label=Publications"
|
||
data-ga-action="Click-on-horizontal" data-ga-label="Publications" id="label_id_seventh"
|
||
class="js-tablist__link">Publications
|
||
<span aria-hidden="true"></span></a>
|
||
</li>
|
||
<li class="js-tablist__item">
|
||
<a href="#flanks" ref="section=Tab&action=Click-on&label=Flanks"
|
||
data-ga-action="Click-on-horizontal" data-ga-label="Flanks" id="label_id_eighth"
|
||
class="js-tablist__link">Flanks
|
||
<span aria-hidden="true"></span></a>
|
||
</li>
|
||
|
||
</ul>
|
||
<div id="frequency_tab" class="js-tabcontent">
|
||
|
||
|
||
|
||
|
||
|
||
<a data-width="640px" href="#popfreq_tp"
|
||
ref="section=Frequency&action=Click-on-Popper&label=popfreq_tp"
|
||
data-section="Frequency" data-ga-action="Click-on-Popper"
|
||
data-ga-label="popfreq_tp" >
|
||
</a>
|
||
<p id="popfreq_tp">
|
||
<font size="5" color="blue"><strong><a href="/snp/docs/gsr/alfa" rel="nofollow" target="_blank">ALFA Allele Frequency</a></strong></font><br/>
|
||
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project <a href="/snp/docs/gsr/alfa" rel="nofollow" target="_blank">page</a> including descriptions, data access, and terms of use.
|
||
|
||
</p>
|
||
|
||
<div>
|
||
<span class="build_id_container"><span class="build_id_label">Release Version:</span> 20231103111315</span>
|
||
</div>
|
||
|
||
<div id="popfreq_table" data-section="PopFrequency" data-ga-action="ScrollPopFrequency" data-ga-label="popfreq" class="popfreq_table">
|
||
<table id="popfreq_datatable" class="stripe">
|
||
<thead>
|
||
<tr>
|
||
<th title="Continental population name">Population</th>
|
||
<th title="Global (total) and sub-populations">Group</th>
|
||
<th title="Total allele counts by population">Sample Size</th>
|
||
<th title="Reference assembly allele">Ref Allele</th>
|
||
<th title="Alternate allele">Alt Allele</th>
|
||
<th title="Reference Homozygous genotype Frequency">Ref HMOZ</th>
|
||
<th title="Alternate Homozygous genotype Frequency">Alt HMOZ</th>
|
||
<th title="Heterozygous genotype Frequency">HTRZ</th>
|
||
<th title="-Log(HWE Probability)">HWEP</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492705">Total</a>
|
||
|
||
</td>
|
||
<td>Global</td>
|
||
<td class="samp_s">25394</td>
|
||
<td class="popfreq_ref_allele">ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.90714</td>
|
||
<td class="popfreq_alt_allele">ACA=0.09286</td>
|
||
<td class="popfreq_alt_allele">0.823817</td>
|
||
<td class="popfreq_alt_allele">0.00953</td>
|
||
<td class="popfreq_alt_allele">0.166654</td>
|
||
<td class="popfreq_alt_allele">1</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492695">European</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">18192</td>
|
||
<td class="popfreq_ref_allele">ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.89045</td>
|
||
<td class="popfreq_alt_allele">ACA=0.10955</td>
|
||
<td class="popfreq_alt_allele">0.792106</td>
|
||
<td class="popfreq_alt_allele">0.011214</td>
|
||
<td class="popfreq_alt_allele">0.19668</td>
|
||
<td class="popfreq_alt_allele">0</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492703">African</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">3424</td>
|
||
<td class="popfreq_ref_allele">ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.9763</td>
|
||
<td class="popfreq_alt_allele">ACA=0.0237</td>
|
||
<td class="popfreq_alt_allele">0.953855</td>
|
||
<td class="popfreq_alt_allele">0.001168</td>
|
||
<td class="popfreq_alt_allele">0.044977</td>
|
||
<td class="popfreq_alt_allele">1</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492696">African Others</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">116</td>
|
||
<td class="popfreq_ref_allele">ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA=1.000</td>
|
||
<td class="popfreq_alt_allele">ACA=0.000</td>
|
||
<td class="popfreq_alt_allele">1.0</td>
|
||
<td class="popfreq_alt_allele">0.0</td>
|
||
<td class="popfreq_alt_allele">0.0</td>
|
||
<td class="popfreq_alt_allele">N/A</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492698">African American</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">3308</td>
|
||
<td class="popfreq_ref_allele">ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.9755</td>
|
||
<td class="popfreq_alt_allele">ACA=0.0245</td>
|
||
<td class="popfreq_alt_allele">0.952237</td>
|
||
<td class="popfreq_alt_allele">0.001209</td>
|
||
<td class="popfreq_alt_allele">0.046554</td>
|
||
<td class="popfreq_alt_allele">1</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492704">Asian</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">164</td>
|
||
<td class="popfreq_ref_allele">ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA=1.000</td>
|
||
<td class="popfreq_alt_allele">ACA=0.000</td>
|
||
<td class="popfreq_alt_allele">1.0</td>
|
||
<td class="popfreq_alt_allele">0.0</td>
|
||
<td class="popfreq_alt_allele">0.0</td>
|
||
<td class="popfreq_alt_allele">N/A</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492697">East Asian</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">110</td>
|
||
<td class="popfreq_ref_allele">ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA=1.000</td>
|
||
<td class="popfreq_alt_allele">ACA=0.000</td>
|
||
<td class="popfreq_alt_allele">1.0</td>
|
||
<td class="popfreq_alt_allele">0.0</td>
|
||
<td class="popfreq_alt_allele">0.0</td>
|
||
<td class="popfreq_alt_allele">N/A</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492701">Other Asian</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">54</td>
|
||
<td class="popfreq_ref_allele">ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA=1.00</td>
|
||
<td class="popfreq_alt_allele">ACA=0.00</td>
|
||
<td class="popfreq_alt_allele">1.0</td>
|
||
<td class="popfreq_alt_allele">0.0</td>
|
||
<td class="popfreq_alt_allele">0.0</td>
|
||
<td class="popfreq_alt_allele">N/A</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492699">Latin American 1</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">146</td>
|
||
<td class="popfreq_ref_allele">ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.959</td>
|
||
<td class="popfreq_alt_allele">ACA=0.041</td>
|
||
<td class="popfreq_alt_allele">0.931507</td>
|
||
<td class="popfreq_alt_allele">0.013699</td>
|
||
<td class="popfreq_alt_allele">0.054795</td>
|
||
<td class="popfreq_alt_allele">4</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492700">Latin American 2</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">610</td>
|
||
<td class="popfreq_ref_allele">ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.977</td>
|
||
<td class="popfreq_alt_allele">ACA=0.023</td>
|
||
<td class="popfreq_alt_allele">0.954098</td>
|
||
<td class="popfreq_alt_allele">0.0</td>
|
||
<td class="popfreq_alt_allele">0.045902</td>
|
||
<td class="popfreq_alt_allele">0</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492702">South Asian</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">94</td>
|
||
<td class="popfreq_ref_allele">ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA=1.00</td>
|
||
<td class="popfreq_alt_allele">ACA=0.00</td>
|
||
<td class="popfreq_alt_allele">1.0</td>
|
||
<td class="popfreq_alt_allele">0.0</td>
|
||
<td class="popfreq_alt_allele">0.0</td>
|
||
<td class="popfreq_alt_allele">N/A</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN11605645">Other</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">2764</td>
|
||
<td class="popfreq_ref_allele">ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.9045</td>
|
||
<td class="popfreq_alt_allele">ACA=0.0955</td>
|
||
<td class="popfreq_alt_allele">0.82055</td>
|
||
<td class="popfreq_alt_allele">0.011577</td>
|
||
<td class="popfreq_alt_allele">0.167873</td>
|
||
<td class="popfreq_alt_allele">1</td>
|
||
</tr>
|
||
|
||
</tbody>
|
||
</table>
|
||
|
||
|
||
<br/>
|
||
<br/>
|
||
</div>
|
||
|
||
|
||
<a data-width="640px" href="#frequency_tp"
|
||
ref="section=Frequency&action=Click-on-Tooltip&label=frequency_tp"
|
||
data-section="Frequency" data-ga-action="Click-on-Tooltip"
|
||
data-ga-label="frequency_tp" class="fa fa-question-circle align-right ncbiPopper">
|
||
<span class="usa-sr-only">Help</span>
|
||
</a>
|
||
<p id="frequency_tp">
|
||
Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").
|
||
</p>
|
||
|
||
|
||
|
||
|
||
<a href="/snp/rs333/download/frequency">
|
||
<i class="fa fa-download" aria-hidden="true"></i> Download</a>
|
||
<div id="dbsnp_freq_table">
|
||
<table id="dbsnp_freq_datatable" class="stripe">
|
||
<thead>
|
||
<tr>
|
||
<th class="study_header">Study</th>
|
||
<th class="population_header">Population</th>
|
||
<th>Group</th>
|
||
<th>Sample Size</th>
|
||
<th>Ref Allele</th>
|
||
<th>Alt Allele</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Exomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
Global
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">1401322</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.8990125</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.1009875</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Exomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
European
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">1165262</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.8844380</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.1155620</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Exomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
South Asian
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">86258</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.98288</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.01712</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Exomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
American
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">44724</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.96968</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.03032</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Exomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
East Asian
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">39700</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.99990</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.00010</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Exomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
African
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">33478</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.98465</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.01535</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Exomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
Ashkenazi Jewish
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">26132</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.86920</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.13080</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Exomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
Middle Eastern
|
||
|
||
</td>
|
||
<td>sub</td>
|
||
<td class="samp_s">5768</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9849</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0151</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
Global
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">149128</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.928592</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.071408</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
European
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">78534</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.88905</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.11095</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
African
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">41550</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.97969</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.02031</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
American
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">15282</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.96303</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.03697</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
East Asian
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">5180</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9994</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0006</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
South Asian
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">4820</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9859</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0141</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
Ashkenazi Jewish
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">3470</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.8697</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.1303</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA398795">gnomAD v4 - Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
Middle Eastern
|
||
|
||
</td>
|
||
<td>sub</td>
|
||
<td class="samp_s">292</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.986</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.014</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB8661">ExAC</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07490465">Global</a>
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">121234</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.927372</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.072628</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB8661">ExAC</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
Europe
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">73300</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.89156</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.10844</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB8661">ExAC</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
Asian
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">25164</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.99054</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.00946</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB8661">ExAC</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
American
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">11578</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.97228</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.02772</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB8661">ExAC</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
African
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">10286</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.97958</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.02042</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB8661">ExAC</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07486028">Other</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">906</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.904</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.096</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA168052">The PAGE Study</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10868975">Global</a>
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">78694</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.97535</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.02465</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA168052">The PAGE Study</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10868721">AfricanAmerican</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">32516</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.97804</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.02196</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA168052">The PAGE Study</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10868735">Mexican</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">10806</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.96965</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.03035</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA168052">The PAGE Study</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10868722">Asian</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">8318</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9995</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0005</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA168052">The PAGE Study</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10868968">PuertoRican</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">7918</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9731</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0269</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA168052">The PAGE Study</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10868777">NativeHawaiian</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">4532</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9715</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0285</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA168052">The PAGE Study</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10868733">Cuban</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">4230</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9567</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0433</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA168052">The PAGE Study</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10868734">Dominican</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">3828</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9673</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0327</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA168052">The PAGE Study</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10868729">CentralAmerican</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">2450</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9714</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0286</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA168052">The PAGE Study</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10868969">SouthAmerican</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">1980</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9672</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0328</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA168052">The PAGE Study</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10868739">NativeAmerican</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">1260</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9246</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0754</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA168052">The PAGE Study</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10868970">SouthAsian</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">856</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.984</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.016</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA678214">38KJPN</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN33574975">JAPANESE</a>
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">77444</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.99995</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.00005</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA507278">Allele Frequency Aggregator</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492705">Total</a>
|
||
|
||
</td>
|
||
<td>Global</td>
|
||
<td class="samp_s">25394</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.90714</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.09286</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA507278">Allele Frequency Aggregator</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492695">European</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">18192</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.89045</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.10955</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA507278">Allele Frequency Aggregator</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492703">African</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">3424</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9763</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0237</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA507278">Allele Frequency Aggregator</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN11605645">Other</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">2764</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9045</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0955</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA507278">Allele Frequency Aggregator</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492700">Latin American 2</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">610</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.977</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.023</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA507278">Allele Frequency Aggregator</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492704">Asian</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">164</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=1.000</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.000</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA507278">Allele Frequency Aggregator</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492699">Latin American 1</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">146</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.959</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.041</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA507278">Allele Frequency Aggregator</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10492702">South Asian</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">94</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=1.00</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.00</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA192955">GO Exome Sequencing Project</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
Global
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">12494</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.93957</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.06043</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA192955">GO Exome Sequencing Project</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
European American
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">8228</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9153</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0847</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA192955">GO Exome Sequencing Project</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
African American
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">4266</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9864</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0136</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB31736">1000Genomes_30X</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07490465">Global</a>
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">6404</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9706</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0294</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB31736">1000Genomes_30X</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07486022">African</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">1786</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9972</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0028</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB31736">1000Genomes_30X</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07488239">Europe</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">1266</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.8902</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.1098</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB31736">1000Genomes_30X</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07486027">South Asian</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">1202</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9917</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0083</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB31736">1000Genomes_30X</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07486024">East Asian</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">1170</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=1.0000</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0000</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB31736">1000Genomes_30X</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07488242">American</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">980</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.965</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.035</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB6930">1000Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07490465">Global</a>
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">5008</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9708</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0292</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB6930">1000Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07486022">African</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">1322</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9970</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0030</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB6930">1000Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07486024">East Asian</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">1008</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=1.0000</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0000</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB6930">1000Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07488239">Europe</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">1006</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.8897</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.1103</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB6930">1000Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07486027">South Asian</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">978</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.991</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.009</td>
|
||
</tr>
|
||
|
||
<tr class="chi_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB6930">1000Genomes</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN07488242">American</a>
|
||
|
||
</td>
|
||
<td>Sub</td>
|
||
<td class="samp_s">694</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.968</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.032</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA489787">Genetic variation in the Estonian population</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
Estonian
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">4480</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.8821</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.1179</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB7217">The Avon Longitudinal Study of Parents and Children</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
PARENT AND CHILD COHORT
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">3854</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9063</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0937</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB7218">UK 10K study - Twins</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
TWIN COHORT
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">3708</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.9258</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.0742</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PPRJNA503394">Northern Sweden</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10359154">ACPOP</a>
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">600</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.893</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.107</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJNA515199">A Vietnamese Genetic Variation Database</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN10744005">Global</a>
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">216</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.995</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.005</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="par_row">
|
||
<td>
|
||
|
||
<a href="/bioproject/PRJEB7725">The Danish reference pan genome</a>
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a href="/biosample/SAMN13003120">Danish</a>
|
||
|
||
</td>
|
||
<td>Study-wide</td>
|
||
<td class="samp_s">40</td>
|
||
<td>A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=0.75</td>
|
||
<td>delGTCAGTATCAATTCTGGAAGAATTTCCAGACA=0.25</td>
|
||
</tr>
|
||
|
||
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
|
||
|
||
</div>
|
||
<div id="variant_details" class="js-tabcontent">
|
||
<a data-width="640px" href="#variant_details_tp"
|
||
ref="section=Variant Details&action=Click-on-Tooltip&label=variant_details_tp"
|
||
data-section="Variant Details" data-ga-action="Click-on-Tooltip"
|
||
data-ga-label="variant_details_tp" class="fa fa-question-circle align-right ncbiPopper">
|
||
<span class="usa-sr-only">Help</span>
|
||
</a>
|
||
<p id="variant_details_tp">
|
||
Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with <a class="external-link" href="/variation/docs/glossary/#MolCon" rel="nofollow" target="_blank">molecular consequences</a> from <a class="external-link" href="http://www.sequenceontology.org/" rel="nofollow" target="_blank">Sequence Ontology</a>. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.</p>
|
||
|
||
|
||
|
||
|
||
<div>
|
||
|
||
<div class="sect_heading">Genomic Placements</div>
|
||
<div id="gene_plac_allele">
|
||
<!-- display class is a short-cut for specifying the stripe hover order-column
|
||
row-border as the class name for a table -->
|
||
<table id="genomics_placements_table" class="stripe">
|
||
<thead>
|
||
<tr>
|
||
<th>Sequence name</th>
|
||
<th>Change</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
|
||
|
||
<tr>
|
||
<td>GRCh38.p14 chr 3</td>
|
||
<td>NC_000003.12:g.46373456_46373487del</td>
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td>GRCh37.p13 chr 3</td>
|
||
<td>NC_000003.11:g.46414947_46414978del</td>
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td>CCR5 RefSeqGene</td>
|
||
<td>NG_012637.1:g.8315_8346del</td>
|
||
</tr>
|
||
|
||
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
|
||
|
||
|
||
<div id="trans_anno_allele">
|
||
|
||
|
||
|
||
<div class="sect_heading">
|
||
Gene: <a target="_blank" data-section="Variant Details"
|
||
data-ga-action="Click-on"
|
||
data-ga-label="transcript_annotation_gene_link"
|
||
ref="section=Variant Details&action=Click-on&label=transcript_annotation_gene_link"
|
||
href="/gene/1234">CCR5</a>, C-C motif chemokine receptor 5
|
||
(plus strand)
|
||
|
||
</div>
|
||
<table class="trans_anno_allele_datatable" class="stripe">
|
||
<thead>
|
||
<tr>
|
||
<th>Molecule type</th>
|
||
<th>Change</th>
|
||
<th>Amino acid[Codon]</th>
|
||
<th>SO Term</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
|
||
<tr class="vard_odd">
|
||
<td>CCR5 transcript variant A</td>
|
||
<td>
|
||
<span>
|
||
|
||
|
||
NM_000579.4:c.554_585del
|
||
|
||
</span>
|
||
</td>
|
||
<td>
|
||
<span><span class="codon-plain">S [</span><span class="codon-ghost">A</span><span class="codon-hilite">G</span><span class="codon-plain">] > I [</span><span class="codon-ghost">A</span><span class="codon-plain">]</span></span>
|
||
</td>
|
||
<td>
|
||
|
||
Coding Sequence Variant
|
||
|
||
</td>
|
||
</tr>
|
||
|
||
<tr class="vard_odd">
|
||
<td>C-C chemokine receptor type 5</td>
|
||
<td>
|
||
<span>
|
||
|
||
|
||
NP_000570.1:p.Ser185fs
|
||
|
||
</span>
|
||
</td>
|
||
<td>
|
||
<span>
|
||
|
||
|
||
S (Ser) > I (Ile)
|
||
|
||
</span>
|
||
</td>
|
||
<td>
|
||
|
||
Frameshift Variant
|
||
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="vard_even">
|
||
<td>CCR5 transcript variant B</td>
|
||
<td>
|
||
<span><a data-width="640px" href="#gene_change_22_tp"
|
||
ref="section=Variant Details&action=Click-on-Tooltip&label=gene_change_tp"
|
||
data-section="Variant Details" data-ga-action="Click-on-Tooltip"
|
||
data-ga-label="gene_change_tp" class="ncbiPopper">NM_001100168.2:c.554_585d…</a><p id="gene_change_22_tp" class="break_values long_value_tooltip">NM_001100168.2:c.554_585del</p></span>
|
||
</td>
|
||
<td>
|
||
<span><span class="codon-plain">S [</span><span class="codon-ghost">A</span><span class="codon-hilite">G</span><span class="codon-plain">] > I [</span><span class="codon-ghost">A</span><span class="codon-plain">]</span></span>
|
||
</td>
|
||
<td>
|
||
|
||
Coding Sequence Variant
|
||
|
||
</td>
|
||
</tr>
|
||
|
||
<tr class="vard_even">
|
||
<td>C-C chemokine receptor type 5</td>
|
||
<td>
|
||
<span>
|
||
|
||
|
||
NP_001093638.1:p.Ser185fs
|
||
|
||
</span>
|
||
</td>
|
||
<td>
|
||
<span>
|
||
|
||
|
||
S (Ser) > I (Ile)
|
||
|
||
</span>
|
||
</td>
|
||
<td>
|
||
|
||
Frameshift Variant
|
||
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
<tr class="vard_odd">
|
||
<td>CCR5 transcript variant C</td>
|
||
<td>
|
||
<span><a data-width="640px" href="#gene_change_32_tp"
|
||
ref="section=Variant Details&action=Click-on-Tooltip&label=gene_change_tp"
|
||
data-section="Variant Details" data-ga-action="Click-on-Tooltip"
|
||
data-ga-label="gene_change_tp" class="ncbiPopper">NM_001394783.1:c.554_585d…</a><p id="gene_change_32_tp" class="break_values long_value_tooltip">NM_001394783.1:c.554_585del</p></span>
|
||
</td>
|
||
<td>
|
||
<span><span class="codon-plain">S [</span><span class="codon-ghost">A</span><span class="codon-hilite">G</span><span class="codon-plain">] > I [</span><span class="codon-ghost">A</span><span class="codon-plain">]</span></span>
|
||
</td>
|
||
<td>
|
||
|
||
Coding Sequence Variant
|
||
|
||
</td>
|
||
</tr>
|
||
|
||
<tr class="vard_odd">
|
||
<td>C-C chemokine receptor type 5</td>
|
||
<td>
|
||
<span>
|
||
|
||
|
||
NP_001381712.1:p.Ser185fs
|
||
|
||
</span>
|
||
</td>
|
||
<td>
|
||
<span>
|
||
|
||
|
||
S (Ser) > I (Ile)
|
||
|
||
</span>
|
||
</td>
|
||
<td>
|
||
|
||
Frameshift Variant
|
||
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
</tbody>
|
||
</table>
|
||
|
||
<div class="sect_heading">
|
||
Gene: <a target="_blank" data-section="Variant Details"
|
||
data-ga-action="Click-on"
|
||
data-ga-label="transcript_annotation_gene_link"
|
||
ref="section=Variant Details&action=Click-on&label=transcript_annotation_gene_link"
|
||
href="/gene/102724297">CCR5AS</a>, CCR5 antisense RNA
|
||
(minus strand)
|
||
|
||
</div>
|
||
<table class="trans_anno_allele_datatable" class="stripe">
|
||
<thead>
|
||
<tr>
|
||
<th>Molecule type</th>
|
||
<th>Change</th>
|
||
<th>Amino acid[Codon]</th>
|
||
<th>SO Term</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
|
||
<tr class="vard_odd">
|
||
<td>CCR5AS transcript</td>
|
||
<td>
|
||
<span>
|
||
|
||
|
||
NR_125406.1:n.
|
||
|
||
</span>
|
||
</td>
|
||
<td>
|
||
<span>
|
||
|
||
|
||
|
||
N/A
|
||
|
||
|
||
</span>
|
||
</td>
|
||
<td>
|
||
|
||
Intron Variant
|
||
|
||
</td>
|
||
</tr>
|
||
|
||
|
||
</tbody>
|
||
</table>
|
||
|
||
|
||
|
||
</div>
|
||
</div>
|
||
|
||
</div>
|
||
|
||
<div id="clinical_significance" class="js-tabcontent">
|
||
<div>
|
||
<a data-width="640px" href="#clin_sig_tp"
|
||
ref="section=Clinical Significance&action=Click-on-Tooltip&label=clinical_significance_tp"
|
||
data-section="Clinical Significance" data-ga-action="Click-on-Tooltip"
|
||
data-ga-label="clinical_significance_tp"
|
||
class="fa fa-question-circle align-right ncbiPopper">
|
||
<span class="usa-sr-only">Help</span>
|
||
</a>
|
||
<p id="clin_sig_tp">
|
||
Clinical Significance tab shows a list of <a class="external-link" href="/clinvar/docs/clinsig" rel="nofollow" target="_blank">clinical significance </a>entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. <a href="/clinvar/RCV000001615.2" rel="nofollow" target="_blank">RCV000001615.2</a>) or Allele ID (i.e. <a href="/clinvar/variation/12274/" rel="nofollow" target="_blank">12274</a>) to access full ClinVar report.</p>
|
||
|
||
|
||
|
||
|
||
<div class="sect_heading">Allele: delGTCAGTATCAATTCTGGAAGAATTTCCAGACA (allele ID:
|
||
<a ref="section=Clinical Significance&action=Click-on&label=allele_link"
|
||
target="_blank" href="/clinvar?term=(23223[AlleleID])"
|
||
data-section="Clinical Significance"
|
||
data-ga-action="Click-on"
|
||
data-ga-label="allele_link">
|
||
23223
|
||
</a>)
|
||
</div>
|
||
|
||
<table id="clinical_significance_datatable" class="stripe" data-height="15em">
|
||
<thead>
|
||
<tr>
|
||
<th>ClinVar Accession</th>
|
||
<th>Disease Names</th>
|
||
<th>Clinical Significance</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
|
||
<tr>
|
||
<td><a target="_blank" data-section="Clinical Significance"
|
||
data-ga-action="Click-on" data-ga-label="ClinVar_Accession_link"
|
||
ref="section=Clinical Significance&action=Click-on&label=ClinVar_Accession_link"
|
||
href="/clinvar/RCV000008663.5">RCV000008663.5</a>
|
||
</td>
|
||
<td>Susceptibility to HIV infection</td>
|
||
<td>Protective</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" data-section="Clinical Significance"
|
||
data-ga-action="Click-on" data-ga-label="ClinVar_Accession_link"
|
||
ref="section=Clinical Significance&action=Click-on&label=ClinVar_Accession_link"
|
||
href="/clinvar/RCV000008664.4">RCV000008664.4</a>
|
||
</td>
|
||
<td>West Nile virus, susceptibility to</td>
|
||
<td>Risk-Factor</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" data-section="Clinical Significance"
|
||
data-ga-action="Click-on" data-ga-label="ClinVar_Accession_link"
|
||
ref="section=Clinical Significance&action=Click-on&label=ClinVar_Accession_link"
|
||
href="/clinvar/RCV000008665.6">RCV000008665.6</a>
|
||
</td>
|
||
<td>Resistance to hepatitis C virus</td>
|
||
<td>Protective</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" data-section="Clinical Significance"
|
||
data-ga-action="Click-on" data-ga-label="ClinVar_Accession_link"
|
||
ref="section=Clinical Significance&action=Click-on&label=ClinVar_Accession_link"
|
||
href="/clinvar/RCV000008666.5">RCV000008666.5</a>
|
||
</td>
|
||
<td>Multiple sclerosis modifier of disease progression</td>
|
||
<td>Risk-Factor</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" data-section="Clinical Significance"
|
||
data-ga-action="Click-on" data-ga-label="ClinVar_Accession_link"
|
||
ref="section=Clinical Significance&action=Click-on&label=ClinVar_Accession_link"
|
||
href="/clinvar/RCV000950102.2">RCV000950102.2</a>
|
||
</td>
|
||
<td>not provided</td>
|
||
<td>Benign</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" data-section="Clinical Significance"
|
||
data-ga-action="Click-on" data-ga-label="ClinVar_Accession_link"
|
||
ref="section=Clinical Significance&action=Click-on&label=ClinVar_Accession_link"
|
||
href="/clinvar/RCV003974808.1">RCV003974808.1</a>
|
||
</td>
|
||
<td>CCR5-related disorder</td>
|
||
<td>Benign</td>
|
||
</tr>
|
||
|
||
</tbody>
|
||
</table>
|
||
|
||
|
||
|
||
|
||
</div>
|
||
</div>
|
||
|
||
<div id="hgvs_tab" class="js-tabcontent">
|
||
<a data-width="640px" href="#aliases_tp"
|
||
ref="section=HGVS&action=Click-on-Tooltip&label=aliases_tp"
|
||
data-section="HGVS" data-ga-action="Click-on-Tooltip" data-ga-label="aliases_tp"
|
||
class="fa fa-question-circle align-right ncbiPopper">
|
||
<span class="usa-sr-only">Help</span>
|
||
</a>
|
||
<p id="aliases_tp">
|
||
Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. <a href="http://varnomen.hgvs.org/">HGVS name</a> is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".</p>
|
||
|
||
<div id="hgvs">
|
||
<table id="alliases_alleles_datatable" class="stripe">
|
||
<thead class="allele_wrap">
|
||
<tr>
|
||
<th>Placement</th>
|
||
|
||
<th>
|
||
A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA=
|
||
</th>
|
||
|
||
<th>
|
||
delGTCAGTATCAATTCTGGAAGAATTTCCAGACA
|
||
</th>
|
||
|
||
</tr>
|
||
</thead>
|
||
<tbody class="allele_wrap">
|
||
|
||
|
||
<tr>
|
||
<td class="alias_hgvs">
|
||
|
||
GRCh38.p14 chr 3
|
||
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NC_000003.12:g.46373453_46373487=
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NC_000003.12:g.46373456_46373487del
|
||
</td>
|
||
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td class="alias_hgvs">
|
||
|
||
GRCh37.p13 chr 3
|
||
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NC_000003.11:g.46414944_46414978=
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NC_000003.11:g.46414947_46414978del
|
||
</td>
|
||
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td class="alias_hgvs">
|
||
|
||
CCR5 RefSeqGene
|
||
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NG_012637.1:g.8312_8346=
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NG_012637.1:g.8315_8346del
|
||
</td>
|
||
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td class="alias_hgvs">
|
||
|
||
CCR5 transcript variant A
|
||
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NM_000579.4:c.551_585=
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NM_000579.4:c.554_585del
|
||
</td>
|
||
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td class="alias_hgvs">
|
||
|
||
CCR5 transcript variant A
|
||
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NM_000579.3:c.551_585=
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NM_000579.3:c.554_585del
|
||
</td>
|
||
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td class="alias_hgvs">
|
||
|
||
CCR5 transcript variant B
|
||
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NM_001100168.2:c.551_585=
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NM_001100168.2:c.554_585del
|
||
</td>
|
||
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td class="alias_hgvs">
|
||
|
||
CCR5 transcript variant B
|
||
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NM_001100168.1:c.551_585=
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NM_001100168.1:c.554_585del
|
||
</td>
|
||
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td class="alias_hgvs">
|
||
|
||
CCR5 transcript variant C
|
||
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NM_001394783.1:c.551_585=
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NM_001394783.1:c.554_585del
|
||
</td>
|
||
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td class="alias_hgvs">
|
||
|
||
LOC727797 transcript
|
||
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NM_001105536.1:c.551_585=
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NM_001105536.1:c.554_585del
|
||
</td>
|
||
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td class="alias_hgvs">
|
||
|
||
C-C chemokine receptor type 5
|
||
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NP_000570.1:p.Tyr184_Thr195=
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NP_000570.1:p.Ser185fs
|
||
</td>
|
||
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td class="alias_hgvs">
|
||
|
||
C-C chemokine receptor type 5
|
||
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NP_001093638.1:p.Tyr184_Thr195=
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NP_001093638.1:p.Ser185fs
|
||
</td>
|
||
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td class="alias_hgvs">
|
||
|
||
C-C chemokine receptor type 5
|
||
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NP_001381712.1:p.Tyr184_Thr195=
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
NP_001381712.1:p.Ser185fs
|
||
</td>
|
||
|
||
</tr>
|
||
|
||
|
||
|
||
<tr>
|
||
<td class="alias_hgvs">
|
||
|
||
CCR5 transcript variant X2
|
||
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
XM_005264855.1:c.550+1=
|
||
</td>
|
||
|
||
<td class="alias_hgvs">
|
||
XM_005264855.1:c.550+4_553del
|
||
</td>
|
||
|
||
</tr>
|
||
|
||
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
|
||
</div>
|
||
|
||
<div id="submissions" class="js-tabcontent">
|
||
<a data-width="640px" href="#submissions_tp"
|
||
ref="section=Submissions&action=Click-on-Tooltip&label=submissions_tp"
|
||
data-section="Submissions" data-ga-action="Click-on-Tooltip"
|
||
data-ga-label="submissions_tp" class="fa fa-question-circle align-right ncbiPopper">
|
||
<span class="usa-sr-only">Help</span>
|
||
</a>
|
||
<p id="submissions_tp">
|
||
Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs).
|
||
We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time.
|
||
Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.
|
||
</p>
|
||
|
||
|
||
<div class="sect_heading">
|
||
|
||
49 SubSNP,
|
||
|
||
15 Frequency,
|
||
|
||
6 ClinVar
|
||
submissions
|
||
</div>
|
||
<div id="submission">
|
||
<table id="submission_datatable" class="stripe">
|
||
<thead>
|
||
<tr>
|
||
<th>No</th>
|
||
<th>Submitter</th>
|
||
<th>Submission ID</th>
|
||
<th>Date (Build)</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
|
||
<tr >
|
||
<td>1</td>
|
||
<td>
|
||
|
||
NCBI
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss334">ss334</a>
|
||
|
||
</td>
|
||
<td>Sep 19, 2000
|
||
(36)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>2</td>
|
||
<td>
|
||
|
||
SNP500CANCER
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss5586335">ss5586335</a>
|
||
|
||
</td>
|
||
<td>Mar 31, 2003
|
||
(113)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>3</td>
|
||
<td>
|
||
|
||
KIDDLAB
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss6312538">ss6312538</a>
|
||
|
||
</td>
|
||
<td>Feb 20, 2003
|
||
(113)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>4</td>
|
||
<td>
|
||
|
||
CGM_KYOTO
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss76868272">ss76868272</a>
|
||
|
||
</td>
|
||
<td>Dec 07, 2007
|
||
(131)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>5</td>
|
||
<td>
|
||
|
||
CNG
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss95210450">ss95210450</a>
|
||
|
||
</td>
|
||
<td>Mar 25, 2008
|
||
(130)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>6</td>
|
||
<td>
|
||
|
||
1000GENOMES
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss1370291708">ss1370291708</a>
|
||
|
||
</td>
|
||
<td>Aug 21, 2014
|
||
(136)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>7</td>
|
||
<td>
|
||
|
||
OMIM-CURATED-RECORDS
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss1505810862">ss1505810862</a>
|
||
|
||
</td>
|
||
<td>Dec 08, 2014
|
||
(142)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>8</td>
|
||
<td>
|
||
|
||
EVA_GENOME_DK
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss1578018880">ss1578018880</a>
|
||
|
||
</td>
|
||
<td>Apr 01, 2015
|
||
(136)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>9</td>
|
||
<td>
|
||
|
||
EVA_DECODE
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss1588016654">ss1588016654</a>
|
||
|
||
</td>
|
||
<td>Apr 01, 2015
|
||
(136)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>10</td>
|
||
<td>
|
||
|
||
EVA_UK10K_ALSPAC
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss1703610048">ss1703610048</a>
|
||
|
||
</td>
|
||
<td>Apr 01, 2015
|
||
(136)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>11</td>
|
||
<td>
|
||
|
||
EVA_UK10K_TWINSUK
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss1703610076">ss1703610076</a>
|
||
|
||
</td>
|
||
<td>Apr 01, 2015
|
||
(136)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>12</td>
|
||
<td>
|
||
|
||
EVA_EXAC
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss1711720988">ss1711720988</a>
|
||
|
||
</td>
|
||
<td>Apr 01, 2015
|
||
(136)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>13</td>
|
||
<td>
|
||
|
||
ILLUMINA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss1958559336">ss1958559336</a>
|
||
|
||
</td>
|
||
<td>Feb 12, 2016
|
||
(136)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>14</td>
|
||
<td>
|
||
|
||
ILLUMINA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss2094812410">ss2094812410</a>
|
||
|
||
</td>
|
||
<td>Dec 20, 2016
|
||
(150)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>15</td>
|
||
<td>
|
||
|
||
ILLUMINA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss2095129519">ss2095129519</a>
|
||
|
||
</td>
|
||
<td>Dec 20, 2016
|
||
(150)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>16</td>
|
||
<td>
|
||
|
||
ILLUMINA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss2136299196">ss2136299196</a>
|
||
|
||
</td>
|
||
<td>Dec 20, 2016
|
||
(136)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>17</td>
|
||
<td>
|
||
|
||
ILLUMINA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss2633944651">ss2633944651</a>
|
||
|
||
</td>
|
||
<td>Nov 08, 2017
|
||
(151)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>18</td>
|
||
<td>
|
||
|
||
GNOMAD
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss2746990371">ss2746990371</a>
|
||
|
||
</td>
|
||
<td>Nov 08, 2017
|
||
(151)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>19</td>
|
||
<td>
|
||
|
||
GNOMAD
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss2792417192">ss2792417192</a>
|
||
|
||
</td>
|
||
<td>Nov 08, 2017
|
||
(151)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>20</td>
|
||
<td>
|
||
|
||
SWEGEN
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss2992240509">ss2992240509</a>
|
||
|
||
</td>
|
||
<td>Nov 08, 2017
|
||
(151)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>21</td>
|
||
<td>
|
||
|
||
ILLUMINA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss3022235374">ss3022235374</a>
|
||
|
||
</td>
|
||
<td>Nov 08, 2017
|
||
(151)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>22</td>
|
||
<td>
|
||
|
||
ILLUMINA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss3652705990">ss3652705990</a>
|
||
|
||
</td>
|
||
<td>Oct 12, 2018
|
||
(152)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>23</td>
|
||
<td>
|
||
|
||
ILLUMINA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss3652705991">ss3652705991</a>
|
||
|
||
</td>
|
||
<td>Oct 12, 2018
|
||
(152)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>24</td>
|
||
<td>
|
||
|
||
EGCUT_WGS
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss3660161315">ss3660161315</a>
|
||
|
||
</td>
|
||
<td>Jul 13, 2019
|
||
(153)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>25</td>
|
||
<td>
|
||
|
||
EVA_DECODE
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss3709143763">ss3709143763</a>
|
||
|
||
</td>
|
||
<td>Jul 13, 2019
|
||
(153)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>26</td>
|
||
<td>
|
||
|
||
ILLUMINA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss3726011844">ss3726011844</a>
|
||
|
||
</td>
|
||
<td>Jul 13, 2019
|
||
(153)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>27</td>
|
||
<td>
|
||
|
||
ACPOP
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss3729851927">ss3729851927</a>
|
||
|
||
</td>
|
||
<td>Jul 13, 2019
|
||
(153)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>28</td>
|
||
<td>
|
||
|
||
PAGE_CC
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss3771028261">ss3771028261</a>
|
||
|
||
</td>
|
||
<td>Jul 13, 2019
|
||
(153)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>29</td>
|
||
<td>
|
||
|
||
KHV_HUMAN_GENOMES
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss3803122224">ss3803122224</a>
|
||
|
||
</td>
|
||
<td>Jul 13, 2019
|
||
(153)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>30</td>
|
||
<td>
|
||
|
||
EVA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss3823905097">ss3823905097</a>
|
||
|
||
</td>
|
||
<td>Apr 25, 2020
|
||
(154)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>31</td>
|
||
<td>
|
||
|
||
EVA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss3986236068">ss3986236068</a>
|
||
|
||
</td>
|
||
<td>Apr 26, 2021
|
||
(155)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>32</td>
|
||
<td>
|
||
|
||
TOMMO_GENOMICS
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss6023035425">ss6023035425</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>33</td>
|
||
<td>
|
||
|
||
EVA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss6322179793">ss6322179793</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>34</td>
|
||
<td>
|
||
|
||
YEGNASUBRAMANIAN_LAB
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss6336492328">ss6336492328</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>35</td>
|
||
<td>
|
||
|
||
GNOMAD
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss6417493578">ss6417493578</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>36</td>
|
||
<td>
|
||
|
||
GNOMAD
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss6587367688">ss6587367688</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>37</td>
|
||
<td>
|
||
|
||
TOMMO_GENOMICS
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss8158936615">ss8158936615</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>38</td>
|
||
<td>
|
||
|
||
EVA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss8236995880">ss8236995880</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>39</td>
|
||
<td>
|
||
|
||
EVA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss8237639319">ss8237639319</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>40</td>
|
||
<td>
|
||
|
||
1000G_HIGH_COVERAGE
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss8253931336">ss8253931336</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>41</td>
|
||
<td>
|
||
|
||
TRAN_CS_UWATERLOO
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss8314406821">ss8314406821</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>42</td>
|
||
<td>
|
||
|
||
HUGCELL_USP
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss8453338520">ss8453338520</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>43</td>
|
||
<td>
|
||
|
||
1000G_HIGH_COVERAGE
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss8532215185">ss8532215185</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>44</td>
|
||
<td>
|
||
|
||
SANFORD_IMAGENETICS
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss8624517312">ss8624517312</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>45</td>
|
||
<td>
|
||
|
||
SANFORD_IMAGENETICS
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss8632051066">ss8632051066</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>46</td>
|
||
<td>
|
||
|
||
TOMMO_GENOMICS
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss8690525433">ss8690525433</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>47</td>
|
||
<td>
|
||
|
||
EVA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss8848580818">ss8848580818</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>48</td>
|
||
<td>
|
||
|
||
EVA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss8960338564">ss8960338564</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>49</td>
|
||
<td>
|
||
|
||
EVA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/projects/SNP/snp_ss.cgi?subsnp_id=ss8981423840">ss8981423840</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>50</td>
|
||
<td>
|
||
|
||
1000Genomes
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.11 - 46414944
|
||
|
||
</td>
|
||
<td>Oct 12, 2018
|
||
(152)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>51</td>
|
||
<td>
|
||
|
||
1000Genomes_30X
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.12 - 46373453
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>52</td>
|
||
<td>
|
||
|
||
The Avon Longitudinal Study of Parents and Children
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.11 - 46414944
|
||
|
||
</td>
|
||
<td>Oct 12, 2018
|
||
(152)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>53</td>
|
||
<td>
|
||
|
||
Genetic variation in the Estonian population
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.11 - 46414944
|
||
|
||
</td>
|
||
<td>Oct 12, 2018
|
||
(152)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>54</td>
|
||
<td>
|
||
|
||
ExAC
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.11 - 46414944
|
||
|
||
</td>
|
||
<td>Oct 12, 2018
|
||
(152)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>55</td>
|
||
<td>
|
||
|
||
The Danish reference pan genome
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.11 - 46414944
|
||
|
||
</td>
|
||
<td>Apr 25, 2020
|
||
(154)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>56</td>
|
||
<td>
|
||
|
||
gnomAD v4 - Exomes
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.12 - 46373453
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>57</td>
|
||
<td>
|
||
|
||
gnomAD v4 - Genomes
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.12 - 46373453
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>58</td>
|
||
<td>
|
||
|
||
GO Exome Sequencing Project
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.11 - 46414944
|
||
|
||
</td>
|
||
<td>Oct 12, 2018
|
||
(152)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>59</td>
|
||
<td>
|
||
|
||
Northern Sweden
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.11 - 46414944
|
||
|
||
</td>
|
||
<td>Jul 13, 2019
|
||
(153)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>60</td>
|
||
<td>
|
||
|
||
The PAGE Study
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.12 - 46373453
|
||
|
||
</td>
|
||
<td>Jul 13, 2019
|
||
(153)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>61</td>
|
||
<td>
|
||
|
||
38KJPN
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.12 - 46373453
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>62</td>
|
||
<td>
|
||
|
||
UK 10K study - Twins
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.11 - 46414944
|
||
|
||
</td>
|
||
<td>Oct 12, 2018
|
||
(152)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>63</td>
|
||
<td>
|
||
|
||
A Vietnamese Genetic Variation Database
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.11 - 46414944
|
||
|
||
</td>
|
||
<td>Jul 13, 2019
|
||
(153)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>64</td>
|
||
<td>
|
||
|
||
ALFA
|
||
|
||
</td>
|
||
<td>
|
||
|
||
NC_000003.12 - 46373453
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>65</td>
|
||
<td>
|
||
|
||
ClinVar
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/clinvar/RCV000008663.5/">RCV000008663.5</a>
|
||
|
||
</td>
|
||
<td>Apr 26, 2021
|
||
(155)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>66</td>
|
||
<td>
|
||
|
||
ClinVar
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/clinvar/RCV000008664.4/">RCV000008664.4</a>
|
||
|
||
</td>
|
||
<td>Apr 26, 2021
|
||
(155)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>67</td>
|
||
<td>
|
||
|
||
ClinVar
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/clinvar/RCV000008665.6/">RCV000008665.6</a>
|
||
|
||
</td>
|
||
<td>Apr 26, 2021
|
||
(155)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>68</td>
|
||
<td>
|
||
|
||
ClinVar
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/clinvar/RCV000008666.5/">RCV000008666.5</a>
|
||
|
||
</td>
|
||
<td>Apr 26, 2021
|
||
(155)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>69</td>
|
||
<td>
|
||
|
||
ClinVar
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/clinvar/RCV000950102.2/">RCV000950102.2</a>
|
||
|
||
</td>
|
||
<td>Apr 26, 2021
|
||
(155)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr >
|
||
<td>70</td>
|
||
<td>
|
||
|
||
ClinVar
|
||
|
||
</td>
|
||
<td>
|
||
|
||
<a target="_blank" data-section="Submissions"
|
||
data-ga-action="Click-on" data-ga-label="Submission_ID_link"
|
||
ref="section=Submissions&action=Click-on&label=Submission_ID_link"
|
||
href="/clinvar/RCV003974808.1/">RCV003974808.1</a>
|
||
|
||
</td>
|
||
<td>Nov 02, 2024
|
||
(157)
|
||
</td>
|
||
</tr>
|
||
|
||
</tbody>
|
||
</table>
|
||
|
||
</div>
|
||
|
||
|
||
</div>
|
||
|
||
<div id="history" class="js-tabcontent">
|
||
<a data-width="640px" href="#history_tp"
|
||
ref="section=History&action=Click-on-Tooltip&label=history_tp"
|
||
data-section="History" data-ga-action="Click-on-Tooltip" data-ga-label="history_tp"
|
||
class="fa fa-question-circle align-right ncbiPopper">
|
||
<span class="usa-sr-only">Help</span>
|
||
</a>
|
||
<p id="history_tp">
|
||
History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).</p>
|
||
|
||
|
||
<div id="updt_hist">
|
||
|
||
|
||
<table id="up_hist_datatable" class="stripe">
|
||
<thead>
|
||
<tr>
|
||
<th>Associated ID</th>
|
||
<th>History Updated (Build)</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
|
||
<tr>
|
||
<td><a target="_blank" data-section="History" data-ga-action="Click-on"
|
||
data-ga-label="Associated_ID_link"
|
||
ref="section=History&action=Click-on&label=Associated_ID_link"
|
||
href="rs4646963">rs4646963</a>
|
||
</td>
|
||
<td>Apr 07, 2003
|
||
(113)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" data-section="History" data-ga-action="Click-on"
|
||
data-ga-label="Associated_ID_link"
|
||
ref="section=History&action=Click-on&label=Associated_ID_link"
|
||
href="rs56030631">rs56030631</a>
|
||
</td>
|
||
<td>Dec 02, 2009
|
||
(131)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" data-section="History" data-ga-action="Click-on"
|
||
data-ga-label="Associated_ID_link"
|
||
ref="section=History&action=Click-on&label=Associated_ID_link"
|
||
href="rs62627090">rs62627090</a>
|
||
</td>
|
||
<td>May 26, 2008
|
||
(130)
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" data-section="History" data-ga-action="Click-on"
|
||
data-ga-label="Associated_ID_link"
|
||
ref="section=History&action=Click-on&label=Associated_ID_link"
|
||
href="rs562091107">rs562091107</a>
|
||
</td>
|
||
<td>Feb 27, 2017
|
||
(150)
|
||
</td>
|
||
</tr>
|
||
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
|
||
|
||
|
||
<div id="obs_present">
|
||
<span>Added to this RefSNP Cluster:</span>
|
||
|
||
|
||
<table id="obs_present_table" class="observation_table stripe">
|
||
<thead>
|
||
<tr>
|
||
<th>Submission IDs</th>
|
||
<th>Observation <a href="/variation/notation/">SPDI</a></th>
|
||
<th>Canonical <a href="/variation/notation/">SPDI</a></th>
|
||
<th>Source RSIDs</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
|
||
<tr>
|
||
<td>
|
||
|
||
ss1588016654
|
||
|
||
</td>
|
||
<td>
|
||
|
||
|
||
<a data-width="640px" href="#history_obs_present_table_observation_1_tp"
|
||
ref="section=History&action=Click-on-Popper&label=history_obs_present_table_observation_1_tp"
|
||
data-section="History" data-ga-action="Click-on-Popper"
|
||
data-ga-label="history_obs_present_table_observation_tp">
|
||
NC_000003.10:46389947:ACAGTCAGTATC…
|
||
</a>
|
||
<p id="history_obs_present_table_observation_1_tp" class="break_values">NC_000003.10:46389947:ACAGTCAGTATCAATTCTGGAAGAATTTCCAG:</p>
|
||
|
||
|
||
</td>
|
||
<td>
|
||
|
||
|
||
<a data-width="640px" href="#history_obs_present_table_allele_obs_1_tp"
|
||
ref="section=History&action=Click-on-Popper&label=history_obs_present_table_allele_obs_1_tp"
|
||
data-section="History" data-ga-action="Click-on-Popper"
|
||
data-ga-label="history_obs_present_table_allele_obs_tp">
|
||
NC_000003.12:46373452:ACAGTCAGTATC…
|
||
</a>
|
||
<p id="history_obs_present_table_allele_obs_1_tp" class="break_values">NC_000003.12:46373452:ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA:ACA</p>
|
||
|
||
|
||
</td>
|
||
<td>
|
||
|
||
|
||
(self)
|
||
|
||
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td>
|
||
|
||
ss2094812410
|
||
|
||
</td>
|
||
<td>
|
||
|
||
|
||
<a data-width="640px" href="#history_obs_present_table_observation_2_tp"
|
||
ref="section=History&action=Click-on-Popper&label=history_obs_present_table_observation_2_tp"
|
||
data-section="History" data-ga-action="Click-on-Popper"
|
||
data-ga-label="history_obs_present_table_observation_tp">
|
||
NC_000003.10:46389950:GTCAGTATCAAT…
|
||
</a>
|
||
<p id="history_obs_present_table_observation_2_tp" class="break_values">NC_000003.10:46389950:GTCAGTATCAATTCTGGAAGAATTTCCAGACA:</p>
|
||
|
||
|
||
</td>
|
||
<td>
|
||
|
||
|
||
<a data-width="640px" href="#history_obs_present_table_allele_obs_2_tp"
|
||
ref="section=History&action=Click-on-Popper&label=history_obs_present_table_allele_obs_2_tp"
|
||
data-section="History" data-ga-action="Click-on-Popper"
|
||
data-ga-label="history_obs_present_table_allele_obs_tp">
|
||
NC_000003.12:46373452:ACAGTCAGTATC…
|
||
</a>
|
||
<p id="history_obs_present_table_allele_obs_2_tp" class="break_values">NC_000003.12:46373452:ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA:ACA</p>
|
||
|
||
|
||
</td>
|
||
<td>
|
||
|
||
|
||
(self)
|
||
|
||
|
||
</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td>
|
||
|
||
15005406,
|
||
|
||
8344538,
|
||
|
||
5899563,
|
||
|
||
6888193,
|
||
|
||
70563,
|
||
|
||
363440,
|
||
|
||
3136792,
|
||
|
||
8344538,
|
||
|
||
1816325,
|
||
|
||
ss1370291708,
|
||
|
||
ss1578018880,
|
||
|
||
ss1703610048,
|
||
|
||
ss1703610076,
|
||
|
||
ss1711720988,
|
||
|
||
ss1958559336,
|
||
|
||
ss2136299196,
|
||
|
||
ss2746990371,
|
||
|
||
ss2792417192,
|
||
|
||
ss2992240509,
|
||
|
||
ss3022235374,
|
||
|
||
ss3652705990,
|
||
|
||
ss3660161315,
|
||
|
||
ss3729851927,
|
||
|
||
ss3823905097,
|
||
|
||
ss3986236068,
|
||
|
||
ss6322179793,
|
||
|
||
ss6336492328,
|
||
|
||
ss8158936615,
|
||
|
||
ss8632051066,
|
||
|
||
ss8960338564,
|
||
|
||
ss8981423840
|
||
|
||
</td>
|
||
<td>
|
||
|
||
|
||
<a data-width="640px" href="#history_obs_present_table_observation_3_tp"
|
||
ref="section=History&action=Click-on-Popper&label=history_obs_present_table_observation_3_tp"
|
||
data-section="History" data-ga-action="Click-on-Popper"
|
||
data-ga-label="history_obs_present_table_observation_tp">
|
||
NC_000003.11:46414943:ACAGTCAGTATC…
|
||
</a>
|
||
<p id="history_obs_present_table_observation_3_tp" class="break_values">NC_000003.11:46414943:ACAGTCAGTATCAATTCTGGAAGAATTTCCAG:</p>
|
||
|
||
|
||
</td>
|
||
<td>
|
||
|
||
|
||
<a data-width="640px" href="#history_obs_present_table_allele_obs_3_tp"
|
||
ref="section=History&action=Click-on-Popper&label=history_obs_present_table_allele_obs_3_tp"
|
||
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19741120,
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RCV000008663.5,
|
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RCV000008664.4,
|
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RCV000008665.6,
|
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RCV000008666.5,
|
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RCV000950102.2,
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RCV003974808.1,
|
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4975927154
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<a data-width="640px" href="#history_obs_present_table_observation_7_tp"
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NC_000003.12:46373455:GTCAGTATCAAT…
|
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<a data-width="640px" href="#history_obs_present_table_allele_obs_7_tp"
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<a data-width="640px" href="#history_obs_present_table_observation_8_tp"
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NT_022517.18:46354946:GTCAGTATCAAT…
|
||
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|
||
<p id="history_obs_present_table_observation_8_tp" class="break_values">NT_022517.18:46354946:GTCAGTATCAATTCTGGAAGAATTTCCAGACA:</p>
|
||
|
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|
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|
||
<td>
|
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|
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<a data-width="640px" href="#history_obs_present_table_allele_obs_8_tp"
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|
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<p id="history_obs_present_table_allele_obs_8_tp" class="break_values">NC_000003.12:46373452:ACAGTCAGTATCAATTCTGGAAGAATTTCCAGACA:ACA</p>
|
||
|
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</td>
|
||
<td>
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||
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||
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||
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|
||
|
||
</tbody>
|
||
</table>
|
||
|
||
|
||
</div>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
</div>
|
||
<div id="publications" class="js-tabcontent">
|
||
<a data-width="640px" href="#publications_tp"
|
||
ref="section=Publications&action=Click-on-Tooltip&label=publications_tp"
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data-ga-label="publications_tp" class="fa fa-question-circle align-right ncbiPopper">
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<span class="usa-sr-only">Help</span>
|
||
</a>
|
||
<p id="publications_tp">
|
||
Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.</p>
|
||
|
||
|
||
<div class="sect_heading">
|
||
108
|
||
citations for rs333
|
||
</div>
|
||
<div id="publication">
|
||
<table id="publication_datatable" class="stripe">
|
||
<thead>
|
||
<tr>
|
||
<th>PMID</th>
|
||
<th class="fir_col">Title</th>
|
||
<th>Author</th>
|
||
<th>Year</th>
|
||
<th>Journal</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/8751444"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">8751444</a>
|
||
</td>
|
||
<td class="fir_col">Resistance to HIV-1 infection in caucasian individuals bearing mutant alleles of the CCR-5 chemokine receptor gene.</td>
|
||
<td>Samson M et al.</td>
|
||
<td>1996</td>
|
||
<td>Nature</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/8756719"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">8756719</a>
|
||
</td>
|
||
<td class="fir_col">Homozygous defect in HIV-1 coreceptor accounts for resistance of some multiply-exposed individuals to HIV-1 infection.</td>
|
||
<td>Liu R et al.</td>
|
||
<td>1996</td>
|
||
<td>Cell</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/9055842"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">9055842</a>
|
||
</td>
|
||
<td class="fir_col">HIV-1 infection in an individual homozygous for the CCR5 deletion allele.</td>
|
||
<td>Biti R et al.</td>
|
||
<td>1997</td>
|
||
<td>Nature medicine</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/9132277"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">9132277</a>
|
||
</td>
|
||
<td class="fir_col">Inherited resistance to HIV-1 conferred by an inactivating mutation in CC chemokine receptor 5: studies in populations with contrasting clinical phenotypes, defined racial background, and quantified risk.</td>
|
||
<td>Zimmerman PA et al.</td>
|
||
<td>1997</td>
|
||
<td>Molecular medicine (Cambridge, Mass.)</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/9140404"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">9140404</a>
|
||
</td>
|
||
<td class="fir_col">Global distribution of the CCR5 gene 32-basepair deletion.</td>
|
||
<td>Martinson JJ et al.</td>
|
||
<td>1997</td>
|
||
<td>Nature genetics</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/9207783"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">9207783</a>
|
||
</td>
|
||
<td class="fir_col">The extent of genetic variation in the CCR5 gene.</td>
|
||
<td>Ansari-Lari MA et al.</td>
|
||
<td>1997</td>
|
||
<td>Nature genetics</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/9466996"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">9466996</a>
|
||
</td>
|
||
<td class="fir_col">The deltaccr5 mutation conferring protection against HIV-1 in Caucasian populations has a single and recent origin in Northeastern Europe.</td>
|
||
<td>Libert F et al.</td>
|
||
<td>1998</td>
|
||
<td>Human molecular genetics</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/9511755"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">9511755</a>
|
||
</td>
|
||
<td class="fir_col">First report of a healthy Indian heterozygous for delta 32 mutant of HIV-1 co-receptor-CCR5 gene.</td>
|
||
<td>Husain S et al.</td>
|
||
<td>1998</td>
|
||
<td>Gene</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/9585595"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">9585595</a>
|
||
</td>
|
||
<td class="fir_col">Dating the origin of the CCR5-Delta32 AIDS-resistance allele by the coalescence of haplotypes.</td>
|
||
<td>Stephens JC et al.</td>
|
||
<td>1998</td>
|
||
<td>American journal of human genetics</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/9600249"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">9600249</a>
|
||
</td>
|
||
<td class="fir_col">Mutational analysis of the CCR5 and CXCR4 genes (HIV-1 co-receptors) in resistance to HIV-1 infection and AIDS development among intravenous drug users.</td>
|
||
<td>Alvarez V et al.</td>
|
||
<td>1998</td>
|
||
<td>Human genetics</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/9768627"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">9768627</a>
|
||
</td>
|
||
<td class="fir_col">Distribution of the CCR5 gene 32-bp deletion in Europe.</td>
|
||
<td>Lucotte G et al.</td>
|
||
<td>1998</td>
|
||
<td>Journal of acquired immune deficiency syndromes and human retrovirology </td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/10520641"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">10520641</a>
|
||
</td>
|
||
<td class="fir_col">Association of CCR5 delta32 with reduced risk of asthma.</td>
|
||
<td>Hall IP et al.</td>
|
||
<td>1999</td>
|
||
<td>Lancet (London, England)</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/10615909"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">10615909</a>
|
||
</td>
|
||
<td class="fir_col">Prevalence of CCR5delta32 in allergic diseases.</td>
|
||
<td>Szalai C et al.</td>
|
||
<td>2000</td>
|
||
<td>Lancet (London, England)</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/10803840"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">10803840</a>
|
||
</td>
|
||
<td class="fir_col">CC-chemokine receptor 5 polymorphism and age of onset in familial multiple sclerosis. Multiple Sclerosis Genetics Group.</td>
|
||
<td>Barcellos LF et al.</td>
|
||
<td>2000</td>
|
||
<td>Immunogenetics</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/11081537"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">11081537</a>
|
||
</td>
|
||
<td class="fir_col">Delta 32 deletion of CCR5 gene and association with asthma or atopy.</td>
|
||
<td>Mitchell TJ et al.</td>
|
||
<td>2000</td>
|
||
<td>Lancet (London, England)</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/11403804"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">11403804</a>
|
||
</td>
|
||
<td class="fir_col">Chemokine receptor polymorphism in transplantation immunology: no longer just important in AIDS.</td>
|
||
<td>Strieter RM et al.</td>
|
||
<td>2001</td>
|
||
<td>Lancet (London, England)</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/11403814"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">11403814</a>
|
||
</td>
|
||
<td class="fir_col">CC chemokine receptor 5 and renal-transplant survival.</td>
|
||
<td>Fischereder M et al.</td>
|
||
<td>2001</td>
|
||
<td>Lancet (London, England)</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/11517319"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">11517319</a>
|
||
</td>
|
||
<td class="fir_col">The coreceptor mutation CCR5Delta32 influences the dynamics of HIV epidemics and is selected for by HIV.</td>
|
||
<td>Sullivan AD et al.</td>
|
||
<td>2001</td>
|
||
<td>Proceedings of the National Academy of Sciences of the United States of America</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/11781692"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">11781692</a>
|
||
</td>
|
||
<td class="fir_col">Absence of the HIV-1 protective Delta ccr5 allele in most ethnic populations of India.</td>
|
||
<td>Majumder PP et al.</td>
|
||
<td>2001</td>
|
||
<td>European journal of human genetics </td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/12874407"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">12874407</a>
|
||
</td>
|
||
<td class="fir_col">A mutated CCR5 gene may have favorable prognostic implications in MS.</td>
|
||
<td>Kantor R et al.</td>
|
||
<td>2003</td>
|
||
<td>Neurology</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/15726497"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">15726497</a>
|
||
</td>
|
||
<td class="fir_col">Gene-environment interaction effects on the development of immune responses in the 1st year of life.</td>
|
||
<td>Hoffjan S et al.</td>
|
||
<td>2005</td>
|
||
<td>American journal of human genetics</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/15744032"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">15744032</a>
|
||
</td>
|
||
<td class="fir_col">Reappraisal of the historical selective pressures for the CCR5-Delta32 mutation.</td>
|
||
<td>Duncan SR et al.</td>
|
||
<td>2005</td>
|
||
<td>Journal of medical genetics</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/15863470"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">15863470</a>
|
||
</td>
|
||
<td class="fir_col">The CCR5-delta32 mutation: impact on disease outcome in individuals with hepatitis C infection from a single source.</td>
|
||
<td>Goulding C et al.</td>
|
||
<td>2005</td>
|
||
<td>Gut</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/16216086"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">16216086</a>
|
||
</td>
|
||
<td class="fir_col">The geographic spread of the CCR5 Delta32 HIV-resistance allele.</td>
|
||
<td>Novembre J et al.</td>
|
||
<td>2005</td>
|
||
<td>PLoS biology</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/16248677"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">16248677</a>
|
||
</td>
|
||
<td class="fir_col">The case for selection at CCR5-Delta32.</td>
|
||
<td>Sabeti PC et al.</td>
|
||
<td>2005</td>
|
||
<td>PLoS biology</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/16418398"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">16418398</a>
|
||
</td>
|
||
<td class="fir_col">CCR5 deficiency increases risk of symptomatic West Nile virus infection.</td>
|
||
<td>Glass WG et al.</td>
|
||
<td>2006</td>
|
||
<td>The Journal of experimental medicine</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/17327408"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">17327408</a>
|
||
</td>
|
||
<td class="fir_col">Prognostic significance of host immune gene polymorphisms in follicular lymphoma survival.</td>
|
||
<td>Cerhan JR et al.</td>
|
||
<td>2007</td>
|
||
<td>Blood</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/17355643"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">17355643</a>
|
||
</td>
|
||
<td class="fir_col">Frequencies of single nucleotide polymorphisms in genes regulating inflammatory responses in a community-based population.</td>
|
||
<td>Huang HY et al.</td>
|
||
<td>2007</td>
|
||
<td>BMC genetics</td>
|
||
</tr>
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||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/17672867"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">17672867</a>
|
||
</td>
|
||
<td class="fir_col">Polymorphisms in chemokine receptor genes and susceptibility to Kawasaki disease.</td>
|
||
<td>Breunis WB et al.</td>
|
||
<td>2007</td>
|
||
<td>Clinical and experimental immunology</td>
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</tr>
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||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/18633131"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">18633131</a>
|
||
</td>
|
||
<td class="fir_col">Host immune gene polymorphisms in combination with clinical and demographic factors predict late survival in diffuse large B-cell lymphoma patients in the pre-rituximab era.</td>
|
||
<td>Habermann TM et al.</td>
|
||
<td>2008</td>
|
||
<td>Blood</td>
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</tr>
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||
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<tr>
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||
<td><a target="_blank" href="/pubmed/18805939"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">18805939</a>
|
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</td>
|
||
<td class="fir_col">Functional genetic polymorphisms and female reproductive disorders: part II--endometriosis.</td>
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||
<td>Tempfer CB et al.</td>
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||
<td>2009</td>
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<td>Human reproduction update</td>
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<tr>
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||
<td><a target="_blank" href="/pubmed/19017985"
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||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">19017985</a>
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||
</td>
|
||
<td class="fir_col">Interaction between RANTES promoter variant and CCR5Delta32 favors recovery from hepatitis B.</td>
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||
<td>Thio CL et al.</td>
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||
<td>2008</td>
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||
<td>Journal of immunology (Baltimore, Md. </td>
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</tr>
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<tr>
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||
<td><a target="_blank" href="/pubmed/19066394"
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||
ref="section=Publications&action=Click-on&label=PMID_link"
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||
data-section="Publications" data-ga-action="Click-on"
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||
data-ga-label="PMID_link">19066394</a>
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</td>
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<td class="fir_col">Organochlorine exposure, immune gene variation, and risk of non-Hodgkin lymphoma.</td>
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||
<td>Colt JS et al.</td>
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||
<td>2009</td>
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<td>Blood</td>
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<tr>
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||
<td><a target="_blank" href="/pubmed/19073967"
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||
ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">19073967</a>
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</td>
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<td class="fir_col">Shared and distinct genetic variants in type 1 diabetes and celiac disease.</td>
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<td>Smyth DJ et al.</td>
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||
<td>2008</td>
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<td>The New England journal of medicine</td>
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<tr>
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||
<td><a target="_blank" href="/pubmed/19131662"
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">19131662</a>
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</td>
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<td class="fir_col">A meta-analysis of candidate gene polymorphisms and ischemic stroke in 6 study populations: association of lymphotoxin-alpha in nonhypertensive patients.</td>
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<td>Wang X et al.</td>
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<td>2009</td>
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<td>Stroke</td>
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<tr>
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||
<td><a target="_blank" href="/pubmed/19225544"
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">19225544</a>
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</td>
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<td class="fir_col">Variation in the lymphotoxin-alpha/tumor necrosis factor locus modifies risk of erythema nodosum in sarcoidosis.</td>
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<td>McDougal KE et al.</td>
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<td>2009</td>
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<td>The Journal of investigative dermatology</td>
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<tr>
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<td><a target="_blank" href="/pubmed/19263529"
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">19263529</a>
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</td>
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<td class="fir_col">Genetic risk factors in recurrent venous thromboembolism: A multilocus, population-based, prospective approach.</td>
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<td>Zee RY et al.</td>
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<td>2009</td>
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<td>Clinica chimica acta; international journal of clinical chemistry</td>
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<tr>
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<td><a target="_blank" href="/pubmed/19330901"
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">19330901</a>
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</td>
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<td class="fir_col">Association of 77 polymorphisms in 52 candidate genes with blood pressure progression and incident hypertension: the Women's Genome Health Study.</td>
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<td>Conen D et al.</td>
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<td>2009</td>
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<td>Journal of hypertension</td>
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<td><a target="_blank" href="/pubmed/19559392"
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">19559392</a>
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</td>
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<td class="fir_col">A candidate gene association study of 77 polymorphisms in migraine.</td>
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<td>Schürks M et al.</td>
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<td>2009</td>
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<td>The journal of pain</td>
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<td><a target="_blank" href="/pubmed/20038229"
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">20038229</a>
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<td class="fir_col">Chemokine polymorphisms and lymphoma: a pooled analysis.</td>
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<td>Bracci PM et al.</td>
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<td>2010</td>
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<td>Leukemia & lymphoma</td>
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<td><a target="_blank" href="/pubmed/20041166"
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">20041166</a>
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<td class="fir_col">Common genetic variation and the control of HIV-1 in humans.</td>
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<td>Fellay J et al.</td>
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<td>PLoS genetics</td>
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<td><a target="_blank" href="/pubmed/20068218"
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">20068218</a>
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</td>
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<td class="fir_col">Donor and recipient chemokine receptor CCR5 genotype is associated with survival after bone marrow transplantation.</td>
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<td>McDermott DH et al.</td>
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<td>2010</td>
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<td>Blood</td>
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<td><a target="_blank" href="/pubmed/20149939"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">20149939</a>
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<td class="fir_col">Host genes associated with HIV/AIDS: advances in gene discovery.</td>
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<td><a target="_blank" href="/pubmed/20205591"
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-ga-label="PMID_link">20205591</a>
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<td class="fir_col">Host determinants of HIV-1 control in African Americans.</td>
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<td>Pelak K et al.</td>
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<td>The Journal of infectious diseases</td>
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<td><a target="_blank" href="/pubmed/20206716"
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data-ga-label="PMID_link">20206716</a>
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<td class="fir_col">Genetic variation within the gene encoding the HIV-1 CCR5 coreceptor in two South African populations.</td>
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<td>Picton AC et al.</td>
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<td>2010</td>
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<td>Infection, genetics and evolution </td>
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<td><a target="_blank" href="/pubmed/20531015"
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">20531015</a>
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<td class="fir_col">Effect of host genetics on incidence of HIV neuroretinal disorder in patients with AIDS.</td>
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<td>Journal of acquired immune deficiency syndromes (1999)</td>
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">20552027</a>
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<td class="fir_col">Host and viral genetic correlates of clinical definitions of HIV-1 disease progression.</td>
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-ga-label="PMID_link">20617924</a>
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<td class="fir_col">Effect of host genetics on the development of cytomegalovirus retinitis in patients with AIDS.</td>
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<td>The Journal of infectious diseases</td>
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<td class="fir_col">Synthetic associations in the context of genome-wide association scan signals.</td>
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<td>Human molecular genetics</td>
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|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/20854658"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">20854658</a>
|
||
</td>
|
||
<td class="fir_col">Overlapping genetic susceptibility variants between three autoimmune disorders: rheumatoid arthritis, type 1 diabetes and coeliac disease.</td>
|
||
<td>Eyre S et al.</td>
|
||
<td>2010</td>
|
||
<td>Arthritis research & therapy</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/20978399"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">20978399</a>
|
||
</td>
|
||
<td class="fir_col">Mendelian randomization: potential use of genetics to enable causal inferences regarding HIV-associated biomarkers and outcomes.</td>
|
||
<td>He W et al.</td>
|
||
<td>2010</td>
|
||
<td>Current opinion in HIV and AIDS</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/21090563"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">21090563</a>
|
||
</td>
|
||
<td class="fir_col">Blockade of cytotoxic T-lymphocyte antigen-4 by ipilimumab results in dysregulation of gastrointestinal immunity in patients with advanced melanoma.</td>
|
||
<td>Berman D et al.</td>
|
||
<td>2010</td>
|
||
<td>Cancer immunity</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/21091093"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">21091093</a>
|
||
</td>
|
||
<td class="fir_col">Polymorphisms in chemokine and receptor genes and gastric cancer risk and survival in a high risk Polish population.</td>
|
||
<td>Gawron AJ et al.</td>
|
||
<td>2011</td>
|
||
<td>Scandinavian journal of gastroenterology</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/21396623"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">21396623</a>
|
||
</td>
|
||
<td class="fir_col">Association of host genetic risk factors with the course of cytomegalovirus retinitis in patients infected with human immunodeficiency virus.</td>
|
||
<td>Sezgin E et al.</td>
|
||
<td>2011</td>
|
||
<td>American journal of ophthalmology</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/21429204"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">21429204</a>
|
||
</td>
|
||
<td class="fir_col">Association of chemokine receptor gene (CCR2-CCR5) haplotypes with acquisition and control of HIV-1 infection in Zambians.</td>
|
||
<td>Malhotra R et al.</td>
|
||
<td>2011</td>
|
||
<td>Retrovirology</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/21673041"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">21673041</a>
|
||
</td>
|
||
<td class="fir_col">Chemokine (C-C motif) receptor 5 -2459 genotype in patients receiving highly active antiretroviral therapy: race-specific influence on virologic success.</td>
|
||
<td>Mehlotra RK et al.</td>
|
||
<td>2011</td>
|
||
<td>The Journal of infectious diseases</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/21708280"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">21708280</a>
|
||
</td>
|
||
<td class="fir_col">Candidate gene studies in gallbladder cancer: a systematic review and meta-analysis.</td>
|
||
<td>Srivastava K et al.</td>
|
||
<td>2011</td>
|
||
<td>Mutation research</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/21854194"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">21854194</a>
|
||
</td>
|
||
<td class="fir_col">Distribution of polymorphisms in cytochrome P450 2B6, histocompatibility complex P5, chemokine coreceptor 5, and interleukin 28B genes in inhabitants from the central area of Argentina.</td>
|
||
<td>Galván CA et al.</td>
|
||
<td>2012</td>
|
||
<td>Genetic testing and molecular biomarkers</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/21881118"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">21881118</a>
|
||
</td>
|
||
<td class="fir_col">Genetic variants and susceptibility to neurological complications following West Nile virus infection.</td>
|
||
<td>Loeb M et al.</td>
|
||
<td>2011</td>
|
||
<td>The Journal of infectious diseases</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/21919968"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">21919968</a>
|
||
</td>
|
||
<td class="fir_col">Validation of genetic variants associated with early acute rejection in kidney allograft transplantation.</td>
|
||
<td>Oetting WS et al.</td>
|
||
<td>2012</td>
|
||
<td>Clinical transplantation</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/21980439"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">21980439</a>
|
||
</td>
|
||
<td class="fir_col">A systems genetics approach provides a bridge from discovered genetic variants to biological pathways in rheumatoid arthritis.</td>
|
||
<td>Nakaoka H et al.</td>
|
||
<td>2011</td>
|
||
<td>PloS one</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/22046140"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">22046140</a>
|
||
</td>
|
||
<td class="fir_col">Role of exonic variation in chemokine receptor genes on AIDS: CCRL2 F167Y association with pneumocystis pneumonia.</td>
|
||
<td>An P et al.</td>
|
||
<td>2011</td>
|
||
<td>PLoS genetics</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/22123319"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">22123319</a>
|
||
</td>
|
||
<td class="fir_col">A prospective phase II trial exploring the association between tumor microenvironment biomarkers and clinical activity of ipilimumab in advanced melanoma.</td>
|
||
<td>Hamid O et al.</td>
|
||
<td>2011</td>
|
||
<td>Journal of translational medicine</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/22194275"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">22194275</a>
|
||
</td>
|
||
<td class="fir_col">Histological and genetic studies in patients with bicuspid aortic valve and ascending aorta complications.</td>
|
||
<td>Pisano C et al.</td>
|
||
<td>2012</td>
|
||
<td>Interactive cardiovascular and thoracic surgery</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/22384103"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">22384103</a>
|
||
</td>
|
||
<td class="fir_col">Low-replicating viruses and strong anti-viral immune response associated with prolonged disease control in a superinfected HIV-1 LTNP elite controller.</td>
|
||
<td>Pernas M et al.</td>
|
||
<td>2012</td>
|
||
<td>PloS one</td>
|
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</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/22474614"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">22474614</a>
|
||
</td>
|
||
<td class="fir_col">Host genes important to HIV replication and evolution.</td>
|
||
<td>Telenti A et al.</td>
|
||
<td>2012</td>
|
||
<td>Cold Spring Harbor perspectives in medicine</td>
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||
</tr>
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||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/22524430"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">22524430</a>
|
||
</td>
|
||
<td class="fir_col">Genetics of longevity. data from the studies on Sicilian centenarians.</td>
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||
<td>Balistreri CR et al.</td>
|
||
<td>2012</td>
|
||
<td>Immunity & ageing </td>
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</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/22807925"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">22807925</a>
|
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</td>
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<td class="fir_col">Touch of chemokines.</td>
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<td>Blanchet X et al.</td>
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<td>2012</td>
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<td>Frontiers in immunology</td>
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</tr>
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||
|
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<tr>
|
||
<td><a target="_blank" href="/pubmed/22927710"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">22927710</a>
|
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</td>
|
||
<td class="fir_col">Genetic markers of cardiovascular disease in rheumatoid arthritis.</td>
|
||
<td>Rodríguez-Rodríguez L et al.</td>
|
||
<td>2012</td>
|
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<td>Mediators of inflammation</td>
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</tr>
|
||
|
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<tr>
|
||
<td><a target="_blank" href="/pubmed/23107763"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
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data-ga-label="PMID_link">23107763</a>
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</td>
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<td class="fir_col">Host genetic risk factors for community-acquired pneumonia.</td>
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<td>Salnikova LE et al.</td>
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<td>2013</td>
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<td>Gene</td>
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</tr>
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<tr>
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||
<td><a target="_blank" href="/pubmed/23632061"
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||
ref="section=Publications&action=Click-on&label=PMID_link"
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||
data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">23632061</a>
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</td>
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<td class="fir_col">CCR2 and CCR5 genes polymorphisms in benign prostatic hyperplasia and prostate cancer.</td>
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<td>Zambra FM et al.</td>
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<td>2013</td>
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<td>Human immunology</td>
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<tr>
|
||
<td><a target="_blank" href="/pubmed/24078580"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">24078580</a>
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</td>
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<td class="fir_col">[Association of chemokines and their receptors genes polymorphisms with risk of myocardial infarction].</td>
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<td>Xu X et al.</td>
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<td>2013</td>
|
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<td>Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics</td>
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</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/24281113"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">24281113</a>
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</td>
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<td class="fir_col">Inflammatory genetic markers of prostate cancer risk.</td>
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<td>Tindall EA et al.</td>
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<td>2010</td>
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<td>Cancers</td>
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</tr>
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<tr>
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||
<td><a target="_blank" href="/pubmed/24750723"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
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||
data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">24750723</a>
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</td>
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<td class="fir_col">Association of chemokine receptor gene variants with HIV-1 genotype predicted tropism.</td>
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<td>Parczewski M et al.</td>
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<td>2014</td>
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<td>HIV medicine</td>
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<tr>
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||
<td><a target="_blank" href="/pubmed/25383745"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
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||
data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">25383745</a>
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</td>
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<td class="fir_col">HIV-infection, atherosclerosis and the inflammatory pathway: candidate gene study in a Spanish HIV-infected population.</td>
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<td>Ibáñez L et al.</td>
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<td>2014</td>
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<td>PloS one</td>
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</tr>
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<tr>
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||
<td><a target="_blank" href="/pubmed/25500253"
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">25500253</a>
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</td>
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<td class="fir_col">Chemokine receptor V Δ32 deletion in multiple sclerosis patients in Csongrád County in Hungary and the North-Bácska region in Serbia.</td>
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<td>Török N et al.</td>
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<td>2015</td>
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<td>Human immunology</td>
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<tr>
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||
<td><a target="_blank" href="/pubmed/26071874"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
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||
data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">26071874</a>
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||
</td>
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<td class="fir_col">CCR5Δ32 (rs333) polymorphism is associated with the susceptibility to systemic lupus erythematosus in female Brazilian patients.</td>
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<td>Baltus TH et al.</td>
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<td>2016</td>
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<td>Rheumatology international</td>
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<td><a target="_blank" href="/pubmed/26223981"
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||
ref="section=Publications&action=Click-on&label=PMID_link"
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||
data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">26223981</a>
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</td>
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<td class="fir_col">The CCR5Δ32 (rs333) polymorphism is not a predisposing factor for severe pandemic influenza in the Brazilian admixed population.</td>
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<td>Maestri A et al.</td>
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<td>2015</td>
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<td>BMC research notes</td>
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<td><a target="_blank" href="/pubmed/26342156"
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||
ref="section=Publications&action=Click-on&label=PMID_link"
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||
data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">26342156</a>
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</td>
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<td class="fir_col">Germline determinants of clinical outcome of cutaneous melanoma.</td>
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<td>Vogelsang M et al.</td>
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<td>2016</td>
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<td>Pigment cell & melanoma research</td>
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<td><a target="_blank" href="/pubmed/26599761"
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ref="section=Publications&action=Click-on&label=PMID_link"
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||
data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">26599761</a>
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</td>
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<td class="fir_col">Genetic Susceptibility to Cardiac and Digestive Clinical Forms of Chronic Chagas Disease: Involvement of the CCR5 59029 A/G Polymorphism.</td>
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<td>de Oliveira AP et al.</td>
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<td>2015</td>
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<td>PloS one</td>
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<td><a target="_blank" href="/pubmed/26765343"
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ref="section=Publications&action=Click-on&label=PMID_link"
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||
data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">26765343</a>
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<td class="fir_col">Privacy-preserving genomic testing in the clinic: a model using HIV treatment.</td>
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<td>McLaren PJ et al.</td>
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<td>2016</td>
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<td>Genetics in medicine </td>
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<td><a target="_blank" href="/pubmed/26982176"
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">26982176</a>
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</td>
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<td class="fir_col">CCR2 and CCR5 genes polymorphisms in women with cervical lesions from Pernambuco, Northeast Region of Brazil: a case-control study.</td>
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<td>Santos EU et al.</td>
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<td>2016</td>
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<td>Memorias do Instituto Oswaldo Cruz</td>
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<tr>
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<td><a target="_blank" href="/pubmed/27427275"
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||
ref="section=Publications&action=Click-on&label=PMID_link"
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||
data-section="Publications" data-ga-action="Click-on"
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data-ga-label="PMID_link">27427275</a>
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</td>
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<td class="fir_col">Association of germline genetic variants in RFC, IL15 and VDR genes with minimal residual disease in pediatric B-cell precursor ALL.</td>
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<td>Dawidowska M et al.</td>
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<td>2016</td>
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<td>Scientific reports</td>
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<td><a target="_blank" href="/pubmed/27894748"
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||
ref="section=Publications&action=Click-on&label=PMID_link"
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data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">27894748</a>
|
||
</td>
|
||
<td class="fir_col">CCR5-Δ32 gene polymorphism is related to celiac disease and autoimmune thyroiditis coincidence in patients with type 1 diabetes.</td>
|
||
<td>Słomiński B et al.</td>
|
||
<td>2017</td>
|
||
<td>Journal of diabetes and its complications</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/28327790"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">28327790</a>
|
||
</td>
|
||
<td class="fir_col">Association of NR1I2 gene polymorphisms and time of progression to AIDS.</td>
|
||
<td>Medeiros RM et al.</td>
|
||
<td>2017</td>
|
||
<td>Memorias do Instituto Oswaldo Cruz</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/28501927"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">28501927</a>
|
||
</td>
|
||
<td class="fir_col">Cytokine gene polymorphism associations with congenital cytomegalovirus infection and sensorineural hearing loss.</td>
|
||
<td>Kasztelewicz B et al.</td>
|
||
<td>2017</td>
|
||
<td>European journal of clinical microbiology & infectious diseases </td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/28969941"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">28969941</a>
|
||
</td>
|
||
<td class="fir_col">CCR5Δ32 (rs333) polymorphism is associated with decreased risk of chronic and aggressive periodontitis: A case-control analysis based in disease resistance and susceptibility phenotypes.</td>
|
||
<td>Cavalla F et al.</td>
|
||
<td>2018</td>
|
||
<td>Cytokine</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/29182645"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">29182645</a>
|
||
</td>
|
||
<td class="fir_col">HLA and non-HLA genes and familial predisposition to autoimmune diseases in families with a child affected by type 1 diabetes.</td>
|
||
<td>Parkkola A et al.</td>
|
||
<td>2017</td>
|
||
<td>PloS one</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/29239247"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">29239247</a>
|
||
</td>
|
||
<td class="fir_col">Correlations between polymorphisms in the uridine diphosphate-glucuronosyltransferase 1A and C-C motif chemokine receptor 5 genes and infection with the hepatitis B virus in three ethnic groups in China.</td>
|
||
<td>Zhang C et al.</td>
|
||
<td>2018</td>
|
||
<td>The Journal of international medical research</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/29369549"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">29369549</a>
|
||
</td>
|
||
<td class="fir_col">[Association of polymorphic markers of chemokine genes, their receptors, and CD14 gene with coronary atherosclerosis].</td>
|
||
<td>Nasibullin TR et al.</td>
|
||
<td>2016</td>
|
||
<td>Genetika</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/29729320"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">29729320</a>
|
||
</td>
|
||
<td class="fir_col">CCR5Δ32 - A piece of protection in the inflammatory puzzle of multiple sclerosis susceptibility.</td>
|
||
<td>Troncoso LL et al.</td>
|
||
<td>2018</td>
|
||
<td>Human immunology</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/30389547"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">30389547</a>
|
||
</td>
|
||
<td class="fir_col">Human CCR5Δ32 (rs333) polymorphism has no influence on severity and mortality of influenza A(H1N1)pdm09 infection in Brazilian patients from the post pandemic period.</td>
|
||
<td>Matos AR et al.</td>
|
||
<td>2019</td>
|
||
<td>Infection, genetics and evolution </td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/31030250"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">31030250</a>
|
||
</td>
|
||
<td class="fir_col">Implication of HMOX1 and CCR5 genotypes on clinical phenotype of Egyptian patients with sickle cell anemia.</td>
|
||
<td>Bakr S et al.</td>
|
||
<td>2019</td>
|
||
<td>Annals of hematology</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/31148855"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">31148855</a>
|
||
</td>
|
||
<td class="fir_col">Evaluation of HCP5 and Chemokine C Receptor type 5 Gene Polymorphisms in Indian Psoriatic Patients.</td>
|
||
<td>Rajesh D et al.</td>
|
||
<td>2019</td>
|
||
<td>Indian journal of dermatology</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/31183980"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">31183980</a>
|
||
</td>
|
||
<td class="fir_col">CCR5 genetic variants and epidemiological determinants for HPV infection and cervical premalignant lesions.</td>
|
||
<td>Mangieri LFL et al.</td>
|
||
<td>2019</td>
|
||
<td>International journal of immunogenetics</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/31396258"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">31396258</a>
|
||
</td>
|
||
<td class="fir_col">Host Genetics of Cytomegalovirus Pathogenesis.</td>
|
||
<td>Sezgin E et al.</td>
|
||
<td>2019</td>
|
||
<td>Frontiers in genetics</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/31479868"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">31479868</a>
|
||
</td>
|
||
<td class="fir_col">Association of single nucleotide polymorphisms in TNFA and CCR5 genes with Japanese Encephalitis: A study from an endemic region of North India.</td>
|
||
<td>Deval H et al.</td>
|
||
<td>2019</td>
|
||
<td>Journal of neuroimmunology</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/32145532"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">32145532</a>
|
||
</td>
|
||
<td class="fir_col">CCR5 and CXCL12 allelic variants: Possible association with childhood neuroblastoma susceptibility?</td>
|
||
<td>Vieira-Filho DRM et al.</td>
|
||
<td>2020</td>
|
||
<td>Journal of neuroimmunology</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/32214033"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">32214033</a>
|
||
</td>
|
||
<td class="fir_col">The Role of MECP2 and CCR5 Polymorphisms on the Development and Course of Systemic Lupus Erythematosus.</td>
|
||
<td>Rzeszotarska E et al.</td>
|
||
<td>2020</td>
|
||
<td>Biomolecules</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/33166788"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
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data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">33166788</a>
|
||
</td>
|
||
<td class="fir_col">High circulating SDF-1and MCP-1 levels and genetic variations in CXCL12, CCL2 and CCR5: Prognostic signature of immune recovery status in treated HIV-positive patients.</td>
|
||
<td>Yeregui E et al.</td>
|
||
<td>2020</td>
|
||
<td>EBioMedicine</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/34178806"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
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data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">34178806</a>
|
||
</td>
|
||
<td class="fir_col">Evaluating the Association between CCR5delta32 Polymorphism (rs333) and the Risk of Breast Cancer in a Cohort of Iranian Population.</td>
|
||
<td>Tajbakhsh A et al.</td>
|
||
<td>2021</td>
|
||
<td>Iranian journal of public health</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/35301180"
|
||
ref="section=Publications&action=Click-on&label=PMID_link"
|
||
data-section="Publications" data-ga-action="Click-on"
|
||
data-ga-label="PMID_link">35301180</a>
|
||
</td>
|
||
<td class="fir_col">A genome-wide association study of outcome from traumatic brain injury.</td>
|
||
<td>Kals M et al.</td>
|
||
<td>2022</td>
|
||
<td>EBioMedicine</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/35393538"
|
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ref="section=Publications&action=Click-on&label=PMID_link"
|
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data-section="Publications" data-ga-action="Click-on"
|
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data-ga-label="PMID_link">35393538</a>
|
||
</td>
|
||
<td class="fir_col">Abstracts from the 54(th) European Society of Human Genetics (ESHG) Conference: e-Posters.</td>
|
||
<td></td>
|
||
<td>2022</td>
|
||
<td>European journal of human genetics </td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/35476033"
|
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ref="section=Publications&action=Click-on&label=PMID_link"
|
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data-section="Publications" data-ga-action="Click-on"
|
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data-ga-label="PMID_link">35476033</a>
|
||
</td>
|
||
<td class="fir_col">A Preventive Role of RANTES Genetic Variation against Undifferentiated Schizophrenia.</td>
|
||
<td>Saoud H et al.</td>
|
||
<td>2022</td>
|
||
<td>Immunological investigations</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/35793369"
|
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data-ga-label="PMID_link">35793369</a>
|
||
</td>
|
||
<td class="fir_col">Genetic polymorphisms associated with susceptibility to COVID-19 disease and severity: A systematic review and meta-analysis.</td>
|
||
<td>Dieter C et al.</td>
|
||
<td>2022</td>
|
||
<td>PloS one</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/35987511"
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data-ga-label="PMID_link">35987511</a>
|
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</td>
|
||
<td class="fir_col">Systematic review and meta-analysis of human genetic variants contributing to COVID-19 susceptibility and severity.</td>
|
||
<td>Gupta K et al.</td>
|
||
<td>2022</td>
|
||
<td>Gene</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/36012436"
|
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-ga-label="PMID_link">36012436</a>
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</td>
|
||
<td class="fir_col">Allelic Variations in the Human Genes TMPRSS2 and CCR5, and the Resistance to Viral Infection by SARS-CoV-2.</td>
|
||
<td>Vitello GA et al.</td>
|
||
<td>2022</td>
|
||
<td>International journal of molecular sciences</td>
|
||
</tr>
|
||
|
||
<tr>
|
||
<td><a target="_blank" href="/pubmed/37629534"
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ref="section=Publications&action=Click-on&label=PMID_link"
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data-ga-label="PMID_link">37629534</a>
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</td>
|
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<td class="fir_col">Narrowing the Relationship between Human CCR5 Gene Polymorphisms and Chagas Disease: Systematic Review and Meta-Analysis.</td>
|
||
<td>Ferreira JM et al.</td>
|
||
<td>2023</td>
|
||
<td>Life (Basel, Switzerland)</td>
|
||
</tr>
|
||
|
||
</tbody>
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</table>
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</div>
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<a ref="section=Publications&action=Click-on&label=View_All_link" target="_blank"
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<p id="flanks_tp">The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.</p>
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<select id="flank_context">
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<option value="option1"
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selected="selected"
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seq_acc_ver="NC_000003.12" position="46373453:46373487"
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assmacc="GCF_000001405.40" ref_allele="A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA"
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seq_acc_ver="NC_000003.11" position="46414944:46414978"
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assmacc="GCF_000001405.25" ref_allele="A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA"
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</option>
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<option value="option3"
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seq_acc_ver="NG_012637.1" position="8312:8346"
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assmacc="" ref_allele="A(CAGT)<sub>2</sub>ATCAATTCTGGAAGAATTTCCAGACA"
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NG_012637.1
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|
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).<br/>
|
||
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.<br/>
|
||
Visit <a class="external-link" href="/tools/sviewer/" target="_blank">Sequence Viewer</a> for help with navigating inside the display and modifying the selection of displayed data tracks.</p>
|
||
|
||
</div>
|
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</h3>
|
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<div id="sequence">
|
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|
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|
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|
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|
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data-svparams="id=NC_000003.12&assm_context=GCF_000001405.40&v=46373386.0:46373520.0&mk=46373453:46373487|rs333!&theme=SNP_ref"
|
||
data-assmacc="GCF_000001405.40" data-rsid="333">
|
||
|
||
GRCh38.p14 ( NC_000003.12 )
|
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|
||
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|
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|
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<option value="option2"
|
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|
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data-svparams="id=NC_000003.11&assm_context=GCF_000001405.25&v=46414877.0:46415011.0&mk=46414944:46414978|rs333!&theme=SNP_ref"
|
||
data-assmacc="GCF_000001405.25" data-rsid="333">
|
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|
||
GRCh37.p13 ( NC_000003.11 )
|
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|
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</option>
|
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|
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<option value="option3"
|
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|
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data-svparams="id=NG_012637.1&assm_context=&v=8245.0:8379.0&mk=8312:8346|rs333!&theme=SNP_ref"
|
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data-assmacc="" data-rsid="333">
|
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NG_012637.1
|
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|
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|
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|
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<script src="/snp/static/nwds/js/header.js" type="text/javascript"> </script>
|
||
<script src="/snp/static/nwds/js/ncbiclearbutton.js" type="text/javascript"> </script>
|
||
<script src="/snp/static/nwds/js/override-uswds.js" type="text/javascript"> </script>
|
||
|
||
|
||
|
||
|
||
|
||
<div>Software version is: 2.0.1.post834+74d9d5e</div>
|
||
|
||
</body>
|
||
</html> |