99 lines
6.6 KiB
Text
99 lines
6.6 KiB
Text
#URL https://www.ncbi.nlm.nih.gov/snp/rs2295769/download/frequency
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#NCBI Reference SNP (rs) Report ALPHA rs2295769
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#Current Build 156
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#Released October 13, 2022
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#Organism Homo sapiens
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#Position chr6:2955568 (GRCh38.p14)
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#Alleles T>C
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#Variation Type SNV (Single Nucleotide Variation)
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#Publications 2 citations
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#
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#Frequency Data Table
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#################
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#Study Population Group Samplesize Ref Allele Alt Allele BioProject ID BioSample ID
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Allele Frequency Aggregator Total Global 377938 T=0.707306 C=0.292694 PRJNA507278 SAMN10492705
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Allele Frequency Aggregator European Sub 322840 T=0.697274 C=0.302726 SAMN10492695
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Allele Frequency Aggregator Other Sub 22496 T=0.70590 C=0.29410 SAMN11605645
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Allele Frequency Aggregator African Sub 11710 T=0.91836 C=0.08164 SAMN10492703
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Allele Frequency Aggregator Latin American 2 Sub 7222 T=0.7809 C=0.2191 SAMN10492700
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Allele Frequency Aggregator Asian Sub 6962 T=0.7284 C=0.2716 SAMN10492704
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Allele Frequency Aggregator South Asian Sub 5220 T=0.7073 C=0.2927 SAMN10492702
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Allele Frequency Aggregator Latin American 1 Sub 1488 T=0.7883 C=0.2117 SAMN10492699
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TopMed Global Study-wide 264690 T=0.779958 C=0.220042 PRJNA400167
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gnomAD - Exomes Global Study-wide 251472 T=0.734265 C=0.265735 PRJNA398795 SAMN07488253
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gnomAD - Exomes European Sub 135396 T=0.711749 C=0.288251 SAMN10181265
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gnomAD - Exomes Asian Sub 49008 T=0.70766 C=0.29234
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gnomAD - Exomes American Sub 34592 T=0.78778 C=0.21222 SAMN07488255
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gnomAD - Exomes African Sub 16256 T=0.93658 C=0.06342 SAMN07488254
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gnomAD - Exomes Ashkenazi Jewish Sub 10080 T=0.67242 C=0.32758 SAMN07488252
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gnomAD - Exomes Other Sub 6140 T=0.7075 C=0.2925 SAMN07488248
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gnomAD - Genomes Global Study-wide 140132 T=0.778031 C=0.221969 PRJNA398795 SAMN07488253
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gnomAD - Genomes European Sub 75886 T=0.70978 C=0.29022 SAMN10181265
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gnomAD - Genomes African Sub 41996 T=0.92780 C=0.07220 SAMN07488254
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gnomAD - Genomes American Sub 13650 T=0.73099 C=0.26901 SAMN07488255
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gnomAD - Genomes Ashkenazi Jewish Sub 3322 T=0.6707 C=0.3293 SAMN07488252
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gnomAD - Genomes East Asian Sub 3134 T=0.7419 C=0.2581 SAMN07488251
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gnomAD - Genomes Other Sub 2144 T=0.7789 C=0.2211 SAMN07488248
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ExAC Global Study-wide 121382 T=0.735546 C=0.264454 PRJEB8661 SAMN07490465
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ExAC Europe Sub 73344 T=0.70749 C=0.29251
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ExAC Asian Sub 25150 T=0.70350 C=0.29650
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ExAC American Sub 11578 T=0.80204 C=0.19796
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ExAC African Sub 10404 T=0.93627 C=0.06373
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ExAC Other Sub 906 T=0.742 C=0.258 SAMN07486028
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The PAGE Study Global Study-wide 78698 T=0.83025 C=0.16975 PRJNA168052 SAMN10868975
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The PAGE Study AfricanAmerican Sub 32514 T=0.92114 C=0.07886 SAMN10868721
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The PAGE Study Mexican Sub 10810 T=0.79315 C=0.20685 SAMN10868735
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The PAGE Study Asian Sub 8316 T=0.7233 C=0.2767 SAMN10868722
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The PAGE Study PuertoRican Sub 7918 T=0.7647 C=0.2353 SAMN10868968
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The PAGE Study NativeHawaiian Sub 4534 T=0.7922 C=0.2078 SAMN10868777
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The PAGE Study Cuban Sub 4230 T=0.7485 C=0.2515 SAMN10868733
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The PAGE Study Dominican Sub 3828 T=0.8101 C=0.1899 SAMN10868734
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The PAGE Study CentralAmerican Sub 2450 T=0.7686 C=0.2314 SAMN10868729
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The PAGE Study SouthAmerican Sub 1982 T=0.7381 C=0.2619 SAMN10868969
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The PAGE Study NativeAmerican Sub 1260 T=0.7563 C=0.2437 SAMN10868739
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The PAGE Study SouthAsian Sub 856 T=0.686 C=0.314 SAMN10868970
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14KJPN JAPANESE Study-wide 28258 T=0.74319 C=0.25681 PRJNA678214 SAMN16789458
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8.3KJPN JAPANESE Study-wide 16760 T=0.74284 C=0.25716 PRJNA678214 SAMN16789458
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GO Exome Sequencing Project Global Study-wide 13006 T=0.77972 C=0.22028 PRJNA192955
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GO Exome Sequencing Project European American Sub 8600 T=0.7007 C=0.2993
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GO Exome Sequencing Project African American Sub 4406 T=0.9340 C=0.0660
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1000Genomes_30x Global Study-wide 6404 T=0.7892 C=0.2108 PRJEB31736 SAMN07490465
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1000Genomes_30x African Sub 1786 T=0.9698 C=0.0302 SAMN07486022
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1000Genomes_30x Europe Sub 1266 T=0.6943 C=0.3057 SAMN07488239
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1000Genomes_30x South Asian Sub 1202 T=0.7097 C=0.2903 SAMN07486027
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1000Genomes_30x East Asian Sub 1170 T=0.7231 C=0.2769 SAMN07486024
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1000Genomes_30x American Sub 980 T=0.759 C=0.241 SAMN07488242
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1000Genomes Global Study-wide 5008 T=0.7871 C=0.2129 PRJEB6930 SAMN07490465
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1000Genomes African Sub 1322 T=0.9705 C=0.0295 SAMN07486022
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1000Genomes East Asian Sub 1008 T=0.7272 C=0.2728 SAMN07486024
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1000Genomes Europe Sub 1006 T=0.7008 C=0.2992 SAMN07488239
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1000Genomes South Asian Sub 978 T=0.714 C=0.286 SAMN07486027
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1000Genomes American Sub 694 T=0.754 C=0.246 SAMN07488242
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Genetic variation in the Estonian population Estonian Study-wide 4480 T=0.7002 C=0.2998 PRJNA489787
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The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 T=0.6985 C=0.3015 PRJEB7217
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UK 10K study - Twins TWIN COHORT Study-wide 3708 T=0.6820 C=0.3180 PRJEB7218
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KOREAN population from KRGDB KOREAN Study-wide 2930 T=0.6983 C=0.3017 PRJNA589833
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HGDP-CEPH-db Supplement 1 Global Study-wide 2082 T=0.7560 C=0.2440 PRJEB6463
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HGDP-CEPH-db Supplement 1 Est_Asia Sub 470 T=0.696 C=0.304 SAMN13169023
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HGDP-CEPH-db Supplement 1 Central_South_Asia Sub 414 T=0.766 C=0.234 SAMN13169022
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HGDP-CEPH-db Supplement 1 Middle_Est Sub 348 T=0.730 C=0.270 SAMN13169025
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HGDP-CEPH-db Supplement 1 Europe Sub 320 T=0.672 C=0.328 SAMN13169024
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HGDP-CEPH-db Supplement 1 Africa Sub 242 T=0.975 C=0.025 SAMN13169020
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HGDP-CEPH-db Supplement 1 America Sub 216 T=0.917 C=0.083 SAMN13169021
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HGDP-CEPH-db Supplement 1 Oceania Sub 72 T=0.38 C=0.62 SAMN13169026
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HapMap Global Study-wide 1890 T=0.8095 C=0.1905 PRJNA60817 SAMN10820145
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HapMap American Sub 768 T=0.750 C=0.250 SAMN10821182
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HapMap African Sub 692 T=0.941 C=0.059 SAMN10821181
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HapMap Asian Sub 254 T=0.728 C=0.272 SAMN10821184
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HapMap Europe Sub 176 T=0.670 C=0.330 SAMN10821183
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Korean Genome Project KOREAN Study-wide 1832 T=0.7020 C=0.2980 PRJNA609628
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Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 T=0.714 C=0.286 PRJEB5829 SAMN13000132
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A Vietnamese Genetic Variation Database Global Study-wide 612 T=0.786 C=0.214 PRJNA515199 SAMN10744005
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Northern Sweden ACPOP Study-wide 600 T=0.705 C=0.295 PPRJNA503394 SAMN10359154
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Medical Genome Project healthy controls from Spanish population Spanish controls Study-wide 534 T=0.712 C=0.288 PRJEB8705 SAMN13001620
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FINRISK Finnish from FINRISK project Study-wide 304 T=0.770 C=0.230 PRJEB7895 SAMN13002954
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Qatari Global Study-wide 216 T=0.593 C=0.407 PRJNA288297 SAMN13019808
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SGDP_PRJ Global Study-wide 208 T=0.380 C=0.620 PRJNA586841
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Ancient Sardinia genome-wide 1240k capture data generation and analysis Global Study-wide 64 T=0.69 C=0.31 PRJEB36033 SAMN15458807
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Siberian Global Study-wide 42 T=0.40 C=0.60 PRJNA267856 SAMN13113809
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The Danish reference pan genome Danish Study-wide 40 T=0.72 C=0.28 PRJEB7725 SAMN13003120
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