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<h1>PhysalisDB</h1>
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<h2>Introduction</h2>
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<p>
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<b><i>Physalis peruviana</i></b> commonly known as <i>Cape gooseberry</i> is a member of the
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<i>Solanaceae</i>
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family that has an increasing popularity due to its nutritional and medicinal values. A broad range of
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genomic
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tools is available for other <i>Solanaceae</i>, including tomato and potato. However, limited genomic
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resources
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are currently available for <i>Cape gooseberry</i>.
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</p>
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<div class="table">
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<img src="/research/physalis/static/main/images/Physalis_peruviana.jpg" alt="Physalis peruviana"
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width="600px"/>
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</div>
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</div>
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<div class="table_cell" style="padding-left: 5px;text-align: justify;">
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We present the first comprehensive analysis of the <b><i>Physalis peruviana</i></b> leaf, root and
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stem
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transcriptomes, which provide valuable resources for development of genetic tools in the
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species.
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Assembled transcripts with gene models could serve as potential candidates for marker discovery with
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a variety of applications including: functional diversity, conservation and improvement to increase
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productivity and fruit quality. <i>P. peruviana</i> was estimated to be phylogenetically branched
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out before the divergence of five other <i>Solanaceae</i> family members, <i>S. lycopersicum</i>,
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<i>S. tuberosum</i>, <i>Capsicum spp</i>, <i>S. melongena</i> and <i>Petunia spp</i>.
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</div>
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</div>
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</div>
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<h2>
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BioProject: <a href="/bioproject/?term=67621"
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target="_blank"><i>Physalis peruviana</i></a></h2>
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ID: 67621
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<br><br>
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||
<h3>Physalis peruviana Colombia variety transcriptome sequencing project</h3>
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<br>
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||
<div class="FrameGrid">
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||
<table class="FrameGrid" cellspacing="0" cellpadding="0">
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<tr>
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||
<th class="social">Resource Name</th>
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||
<th class="social">Number<br/>of Links</th>
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||
</tr>
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<tr>
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<td colspan="2" class="DataGrp"><b>Sequence data</b></td>
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</tr>
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<tr>
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<td><span class="smallIndent">Nucleotide (total)</span></td>
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<td class="alignRight"><a href="/sites/nuccore?term=67621[BioProject]"
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class="RegularLink">33874</a>
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</td>
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||
</tr>
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||
<tr>
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||
<td><span class="LeftIndent2">TSA</span></td>
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<td class="alignRight"><a
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||
href="/nuccore?term=67621[BioProject]+AND+tsa+master[prop]"
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class="RegularLink">1</a>
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||
</td>
|
||
</tr>
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<tr>
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||
<td><span class="LeftIndent2">Transcripts</span></td>
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||
<td class="alignRight"><a href="/sites/nuccore?term=67621[BioProject]"
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||
class="RegularLink">33873</a>
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||
</td>
|
||
</tr>
|
||
<tr>
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||
<td><span class="smallIndent">SRA Experiments</span></td>
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||
<td class="alignRight"><a
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||
href="/sra?linkname=bioproject_sra_all&from_uid=67621"
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||
class="RegularLink">11</a></td>
|
||
</tr>
|
||
<tr>
|
||
<td colspan="2" class="DataGrp"><b>Publications</b></td>
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||
</tr>
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||
<tr>
|
||
<td><span class="smallIndent">PubMed</span></td>
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||
<td class="alignRight"><a
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||
href="/bioproject?Db=pubmed&DbFrom=bioproject&Cmd=Link&LinkName=bioproject_pubmed&LinkReadableName=PubMed&ordinalpos=1&IdsFromResult=67621"
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||
class="RegularLink">2</a></td>
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||
</tr>
|
||
<tr>
|
||
<td><span class="smallIndent">PMC</span></td>
|
||
<td class="alignRight"><a
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||
href="/bioproject?Db=pmc&DbFrom=bioproject&Cmd=Link&LinkName=bioproject_pmc&LinkReadableName=Full%20text%20in%20PMC&ordinalpos=1&IdsFromResult=67621"
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||
class="RegularLink">2</a></td>
|
||
</tr>
|
||
<tr>
|
||
<td colspan="2" class="DataGrp"><b>Other datasets</b></td>
|
||
</tr>
|
||
<tr>
|
||
<td><span class="smallIndent">BioSample</span></td>
|
||
<td class="alignRight"><a
|
||
href="/bioproject?Db=biosample&DbFrom=bioproject&Cmd=Link&LinkName=bioproject_biosample&LinkReadableName=BioSample&ordinalpos=1&IdsFromResult=67621"
|
||
class="RegularLink">10</a></td>
|
||
</tr>
|
||
</table>
|
||
</div>
|
||
|
||
<h2>Papers</h2>
|
||
<div class="paper_list">
|
||
<ol>
|
||
<li>
|
||
Vera Alvarez R., Medeiros Vidal N, et al.
|
||
<a href="https://academic.oup.com/database/article/doi/10.1093/database/bax008/3737827"target="_blank">
|
||
Workflow and web application for annotating NCBI BioProject transcriptome data.
|
||
</a><i>Database</i>, Volume 2017, 1 January 2017, bax008
|
||
</li>
|
||
<li>
|
||
Enciso-Rodríguez FE, González C, Rodríguez EA, et al. <a
|
||
href="/pmc/articles/PMC3701084/" target="_blank">Identification of
|
||
Immunity
|
||
Related Genes to Study the
|
||
<i>Physalis peruviana</i> – <i>Fusarium oxysporum Pathosystem</i>.</a> Jordan IK, ed. PLoS
|
||
ONE.
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||
2013;8(7):e68500.
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||
doi:10.1371/journal.pone.0068500.
|
||
</li>
|
||
<li>
|
||
Garzón-Martínez GA, Zhu ZI, Landsman D, Barrero LS, Mariño-Ramírez L. <a
|
||
href="/pmc/articles/PMC3488962/" target="_blank">The <i>Physalis
|
||
peruviana</i> leaf
|
||
transcriptome: assembly, annotation and gene model prediction</a>. BMC Genomics.
|
||
2012;13:151.
|
||
doi:10.1186/1471-2164-13-151.
|
||
</li>
|
||
<li>
|
||
Simbaqueba J, Sánchez P, Sanchez E, et al. <a
|
||
href="/pmc/articles/PMC3198794/"
|
||
target="_blank">Development and Characterization of
|
||
Microsatellite Markers for
|
||
the Cape Gooseberry <i>Physalis peruviana</i>.</a> Jordan IK, ed. PLoS ONE.
|
||
2011;6(10):e26719.
|
||
doi:10.1371/journal.pone.0026719.
|
||
</li>
|
||
</ol>
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</div>
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<br>
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