172 lines
8.3 KiB
HTML
172 lines
8.3 KiB
HTML
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
|
|
<!-- $Id: index.html 46629 2021-08-10 15:04:59Z lotovv $ -->
|
|
|
|
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
|
|
<head>
|
|
<title>NCBI Tree Viewer example</title>
|
|
<meta http-equiv="X-UA-Compatible" content="IE=edge">
|
|
<link rel="stylesheet" type="text/css" href="css/ncbi_templates.css"/>
|
|
<link rel="stylesheet" type="text/css" href="css/style.css" media="screen, projection, print"/>
|
|
<link rel="stylesheet" type="text/css" href="css/tv_standalone.css"/>
|
|
<script type="text/javascript" src="js/treeviewer.js"></script>
|
|
|
|
|
|
|
|
|
|
</head>
|
|
|
|
<body>
|
|
<div id="ncbiheader">
|
|
<h1><a title="NCBI Home Page" href="https://www.ncbi.nlm.nih.gov">NCBI</a></h1>
|
|
|
|
<ul class="hidden_for_print">
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/"
|
|
title="NCBI Home Page">Home</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/sites/entrez/"
|
|
title="PubMed: Biomedical Abstracts Database">PubMed</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/Genbank/"
|
|
title="GenBank: Repository of public sequence data">GenBank</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/BLAST/"
|
|
title="BLAST: Basic Local Alignment Search Tool">BLAST</a></li>
|
|
</ul>
|
|
|
|
|
|
<div id="app_name">
|
|
<h1 id="app_name_h1" OnMouseOver="this.style.cursor='pointer';" OnMouseOut="this.style.cursor='default';" onclick="location.href='index.html'"> Tree Viewer</h1>
|
|
<h1 id="app_ver_h1" OnMouseOver="this.style.cursor='pointer';" OnMouseOut="this.style.cursor='default';" onclick="location.href='//www.ncbi.nlm.nih.gov/tools/treeviewer/releasenotes/'">1.16.0 </h1>
|
|
<a id="treeviewer-help" title="Tree Viewer Help" href="#" onClick="TreeView.showHelp();">Help</a>
|
|
</div>
|
|
</div>
|
|
<noscript>
|
|
<h1>JavaScript is required.</h1>
|
|
</noscript>
|
|
|
|
<div id="app-frontpage">
|
|
<h1>NCBI's Tree Viewer</h1>
|
|
|
|
<h2>Sample Links:</h2>
|
|
<dl>
|
|
<dt>
|
|
<a href="tv.html?appname=ncbi_tviewer&url=https://ftp.ncbi.nlm.nih.gov/toolbox/gbench/samples/treeviewer/tree_txt.asn&renderer=circular&featnames=*&setmidpointroot=true&treename=tree_txt.asn">tree_txt.asn file shown as Circular Tree</a>
|
|
</dt>
|
|
<dd>
|
|
This link provides a look at tree_txt.asn file shown as Circular Tree.
|
|
</dd>
|
|
|
|
<dt>
|
|
<a href="tv.html?appname=ncbi_tviewer&url=https://ftp.ncbi.nlm.nih.gov/toolbox/gbench/samples/treeviewer/tree_txt.asn&renderer=slanted&featnames=*&setmidpointroot=true&treename=tree_txt.asn">tree_txt.asn file shown as Slanted Cladogram</a>
|
|
</dt>
|
|
<dd>
|
|
This link provides a look at tree_txt.asn file shown as Slanted Cladogram.
|
|
</dd>
|
|
<dt>
|
|
<a href="tv.html?appname=ncbi_tviewer&url=https://ftp.ncbi.nlm.nih.gov/toolbox/gbench/samples/treeviewer/carbohydrate_kinase_FGGY_midpoint.asn&renderer=rect&sort=distance&featnames=*&treename=carbohydrate_kinase_FGGY_midpoint.asn">carbohydrate_kinase_FGGY_midpoint.asn file shown as Rectangle Cladogram sorted by distance</a>
|
|
</dt>
|
|
<dd>
|
|
This link provides a look at carbohydrate_kinase_FGGY_midpoint.asn file shown as Rectangle Cladogram sorted by distance.
|
|
</dd>
|
|
|
|
<dt>
|
|
<a href="tv.html?appname=ncbi_tviewer&url=https://ftp.ncbi.nlm.nih.gov/toolbox/gbench/samples/treeviewer/genometree167.asn&renderer=circular&sort=distance&featnames=*&collapsetoviewport=true&treename=genometree167.asn">genometree167.asn shown as Circular Tree</a>
|
|
</dt>
|
|
<dd>
|
|
This link provides a look at genometree167.asn file shown as Circular Tree showing usage of node parameters
|
|
</dd>
|
|
|
|
<dt>
|
|
<a href="tv.html?appname=ncbi_tviewer&labelformat=$(seq-id)|$(organism)&url=https://ftp.ncbi.nlm.nih.gov/toolbox/gbench/samples/treeviewer/recA_nj_nw.asn&renderer=rect&ifmt=asnt&treename=recA_nj_nw.asn&fontface=Lucida&fontsize=16">recA_nj_nw.asn file shown as Rectangle Cladogram</a>
|
|
</dt>
|
|
<dd>
|
|
This link provides a look at recA_nj_nw.asn file shown as Rectangle Cladogram with custom label and changed font
|
|
</dd>
|
|
|
|
<dt>
|
|
<a href="tv.html?appname=ncbi_tviewer&url=https://ftp.ncbi.nlm.nih.gov/toolbox/gbench/samples/treeviewer/sample_tree.asn&renderer=radial&setmidpointroot=true&treename=sample_tree.asn">sample_tree.asn file shown as Radial Tree</a>
|
|
</dt>
|
|
<dd>
|
|
This link provides a look at sample_tree.asn file shown as Radial Tree.
|
|
</dd>
|
|
|
|
<dt>
|
|
<a href="tv.html?appname=ncbi_tviewer&url=https://ftp.ncbi.nlm.nih.gov/toolbox/gbench/samples/treeviewer/kmer_9219.asn&renderer=rect&treename=kmer_9219.asn">kmer_9219_tree.asn file shown as Rectangle Cladogram</a>
|
|
</dt>
|
|
<dd>
|
|
This link provides a look at kmer_9219_tree.asn file shown as Rectangle Cladogram.
|
|
</dd>
|
|
|
|
|
|
<dt>
|
|
<a href="tv.html?appname=ncbi_tviewer&url=https://ftp.ncbi.nlm.nih.gov/toolbox/gbench/samples/treeviewer/kmer.asn&renderer=rect&vertzoom=true&treename=kmer.asn">kmer.asn file shown as Rectangle Cladogram with vertical only zoom</a>
|
|
</dt>
|
|
<dd>
|
|
This link provides a look at kmer.asn file shown as Rectangle Cladogram.
|
|
</dd>
|
|
|
|
|
|
|
|
<dt>
|
|
<a href="tv.html?appname=ncbi_tviewer&url_reload=https://ftp.ncbi.nlm.nih.gov/toolbox/gbench/samples/primates.asn&renderer=radial&use_distance=false">primates.asn file from ftp site shown as Radial Tree</a>
|
|
</dt>
|
|
<dd>
|
|
This link provides a look at primates.asn file from ftp site shown as Radial Tree.
|
|
</dd>
|
|
<dt>
|
|
<a href="tv.html?appname=ncbi_tviewer&url=https://ftp.ncbi.nlm.nih.gov/toolbox/gbench/samples/NewickTree.nwk&renderer=rect&use_distance=false">NewickTree.nwk in Newick format file from ftp site shown as Rectangle Cladogram</a>
|
|
</dt>
|
|
<dd>
|
|
This link provides a look at NewickTree.nwk in Newick format file from ftp site shown as Rectangle Cladogram.
|
|
</dd>
|
|
|
|
<p>To see your own tree, <input type="button" id="mainshow-btn" background-image = "images/upload.png" background-repeat = no-repeat background-position = left padding-left=16px
|
|
value="Upload" onclick="location.href='tv.html?appname=ncbi_tviewer&renderer=radial&openuploaddialog'"/> your data</p>
|
|
|
|
</dl>
|
|
|
|
|
|
<p>You can also <a href="tvapp.html">embed</a> Tree Viewer on your own page.</p>
|
|
<p>Demo of TV <a href="event_demo_dynamic_loader.html">signals handling</a></p>
|
|
<p>Demo of TV <a href="tvdemo_selection.html">selection handling</a></p>
|
|
<p>Demo of TV <a href="tvdemo_query_api.html">macro API</a></p>
|
|
<p>Demo of TV <a href="tvdemo_collapse_to_fit.html">collapse to viewport</a></p>
|
|
|
|
|
|
|
|
|
|
<p>Demo of <a href="../sviewer/TV_SV_demo.html">TV and Sequence Viewer</a> on same page </p>
|
|
|
|
<!--
|
|
<h2>Compatible browsers</h2>
|
|
<p>MS Windows: Microsoft Internet Explorer 7, Firefox 2, Firefox 3, Opera 9.5</p>
|
|
<p>Mac OS X: Firefox 2, Firefox 3, Safari 3, Camino 1.5</p>
|
|
<p>Linux: Firefox 2, Firefox 3</p>
|
|
-->
|
|
</div>
|
|
|
|
|
|
|
|
<!-- NCBI Footer -->
|
|
<div id="ncbifooter" class="hidden_for_print">
|
|
<div id="footer-contents-right">
|
|
<a class="nih_img_link" title="NIH" href="https://www.nih.gov">NIH</a>
|
|
<a class="nlm_img_link" title="NLM" href="https://www.nlm.nih.gov">NLM</a>
|
|
<a class="dhhs_img_link" title="DHHS" href="https://www.dhhs.gov">DHHS</a>
|
|
<a class="usagov_img_link" title="USA.gov" href="https://www.usa.gov">USA.gov</a>
|
|
</div>
|
|
|
|
<div id="footer-contents-left">
|
|
<a href="https://www.ncbi.nlm.nih.gov/About/glance/contact_info.html">Contact</a> |
|
|
<a href="https://www.ncbi.nlm.nih.gov/About/disclaimer.html">Copyright</a> |
|
|
<a href="https://www.ncbi.nlm.nih.gov/About/disclaimer.html#disclaimer">Disclaimer</a> |
|
|
<a href="https://www.nlm.nih.gov/privacy.html">Privacy</a> |
|
|
<a href="https://www.ncbi.nlm.nih.gov/About/accessibility.html">Accessibility</a>
|
|
<p class="address">National Center for Biotechnology Information, US National Library of Medicine <br />
|
|
8600 Rockville Pike, Rockville, MD USA 20894</p>
|
|
</div>
|
|
</div>
|
|
<!-- NCBI Footer Ends -->
|
|
|
|
|
|
|
|
</body>
|
|
</html>
|
|
|