109 lines
6 KiB
HTML
109 lines
6 KiB
HTML
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<title>NCBI Sequence Viewer 3.50.0 Remote VCFtabix and plain VCF files Demo</title>
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<li><a href="." target="_self">NCBI Sequence Viewer Home</a></li>
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<h1>Remote VCFtabix and plain VCF files Demo</h1>
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<h2>Introduction</h2>
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<p/>
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The example demonstrates visualization of remote (HTTP-based) VCFtabix and plain VCF files in NCBI Sequence Viewer.<br>
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<p/>
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<p/>
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<h3>Remote VCFtabix file example</h3>
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<p/>
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</p>
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Homo sapiens: chromosome 22, assembly GRCh37.p13 (<a href="https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.25">https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.25</a>)<br>
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VCFtabix file is hosted at https://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/VCF/common_all_20180423.vcf.gz
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</p>
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<div id="SViewer0" class="SeqViewerApp" data-autoload><a href="?embedded=full&appname=rvcftabixdemo&id=NC_000022.10&tracks=[key:sequence_track][key:dbvar_track,name:Example0,display_name:(R)%20VCFtabix track common_all_20180423.vcf.gz,dbname:vcfTabix,category:Remote%20Data,annots:https\://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/VCF/common_all_20180423.vcf.gz,Rendering:Expandable,sort_by:,HistThreshold:0,rmt_mapped_id:22]&assm_context=GCF_000001405.25&v=33121080:33121179"></a>
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</div>
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<p/>
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<p/>
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<h3>Remote plain VCF file example</h3>
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<p/>
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</p>
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Severe acute respiratory syndrome coronavirus 2 isolate Wuhan-Hu-1, complete genome (<a href=https://www.ncbi.nlm.nih.gov/assembly/GCF_009858895.2>https://www.ncbi.nlm.nih.gov/assembly/GCF_009858895.2</a>)<br>
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plain VCF file is hosted at https://sra-pub-sars-cov2.s3.amazonaws.com/vcf/ERR4157963/ERR4157963.ref.snpeff.vcf
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</p>
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<div id="SViewer1" class="SeqViewerApp" data-autoload><a href="?embedded=full&appname=vcfplaindemo&id=NC_045512.2&tracks=[key:sequence_track][key:dbvar_track,name:ERR4157963.vcf,display_name:(R)%20ERR4157963.vcf,id:R99XjQAAA14CF,dbname:vcf,annots:https\://sra-pub-sars-cov2.s3.amazonaws.com/vcf/ERR4157963/ERR4157963.ref.snpeff.vcf,Rendering:Expandable,sort_by:,HistThreshold:0,shown:true,order:8]&assm_context=GCF_009858895.2"></a>
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