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<h1>My Bibliography</h1>
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<h2 id="bibname"><a href="./">David Landsman, PhD's Bibliography</a></h2>
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<span id="total-count">165 citations,</span> Sort by
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pmid="26607897"
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>
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<label for="cit398758">select</label>
|
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<div class="ncbi-docsum">
|
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<span class="authors">
|
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Gamez RM, Rodríguez F, Bernal JF, Agarwala R, Landsman D, Mariño-Ramírez L.
|
||
</span><a href="/pubmed/26607897/">
|
||
Genome Sequence of the Banana Plant Growth-Promoting Rhizobacterium Bacillus amyloliquefaciens BS006.
|
||
</a><span class="source">Genome Announc</span>.
|
||
|
||
|
||
<span class="pubdate">2015 Nov 25;</span><span class="volume">3</span><span class="issue">(6)</span><span>. </span><span class="doi">doi: 10.1128/genomeA.01391-15. </span><span class="pmid">PubMed PMID:
|
||
26607897</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC4661316</span><span>. </span>
|
||
</div>
|
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</div>
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</div>
|
||
|
||
|
||
|
||
|
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|
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<div class="citation">
|
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<div class="align-left">
|
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<input id="cit398798" type="checkbox" name="cit398798" value="398798" class="citation-check"
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pmid="26494672"
|
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>
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<label for="cit398798">select</label>
|
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</div>
|
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<div class="ncbi-docsum">
|
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<span class="authors">
|
||
Donado-Godoy P, Bernal JF, Rodríguez F, Gomez Y, Agarwala R, Landsman D, Mariño-Ramírez L.
|
||
</span><a href="/pubmed/26494672/">
|
||
Genome Sequences of Multidrug-Resistant Salmonella enterica Serovar Paratyphi B (dT+) and Heidelberg Strains from the Colombian Poultry Chain.
|
||
</a><span class="source">Genome Announc</span>.
|
||
|
||
|
||
<span class="pubdate">2015 Oct 22;</span><span class="volume">3</span><span class="issue">(5)</span><span>. </span><span class="doi">doi: 10.1128/genomeA.01265-15. </span><span class="pmid">PubMed PMID:
|
||
26494672</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC4616196</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
|
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||
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|
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<div class="citation">
|
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<div class="align-left">
|
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<input id="cit398833" type="checkbox" name="cit398833" value="398833" class="citation-check"
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pmid="26156321"
|
||
|
||
>
|
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<label for="cit398833">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Deng T, Zhu ZI, Zhang S, Postnikov Y, Huang D, Horsch M, Furusawa T, Beckers J, Rozman J, Klingenspor M, Amarie O, Graw J, Rathkolb B, Wolf E, Adler T, Busch DH, Gailus-Durner V, Fuchs H, Hrabě de Angelis M, van der Velde A, Tessarollo L, Ovcherenko I, Landsman D, Bustin M.
|
||
</span><a href="/pubmed/26156321/">
|
||
Functional compensation among HMGN variants modulates the DNase I hypersensitive sites at enhancers.
|
||
</a><span class="source">Genome Res</span>.
|
||
|
||
|
||
<span class="pubdate">2015 Sep;</span><span class="volume">25</span><span class="issue">(9)</span><span class="pages">:1295-308</span><span>. </span><span class="doi">doi: 10.1101/gr.192229.115. </span><span class="pubstatus">Epub 2015 Jul 8. </span><span class="pmid">PubMed PMID:
|
||
26156321</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC4561489</span><span>. </span>
|
||
</div>
|
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</div>
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</div>
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|
||
Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJ, Craik DJ, Finn RD, Gloriam D, Haft DH, Henrissat B, Holliday GL, Isberg V, Kaas Q, Landsman D, Lenfant N, Manning G, Nagano N, Srinivasan N, O'Donovan C, Pruitt KD, Sowdhamini R, Rawlings ND, Saier MH Jr, Sharman JL, Spedding M, Tsirigos KD, Vastermark A, Vriend G.
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Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.
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<span class="pubdate">2015;</span><span class="volume">2015</span><span class="pages">:bav063</span><span>. </span><span class="doi">doi: 10.1093/database/bav063. </span><span class="pubstatus">eCollection 2015. </span><span class="pmid">PubMed PMID:
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|
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<div class="citation-wrap">
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pmid="25820941"
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>
|
||
<label for="cit398757">select</label>
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</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
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Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N, O'Donovan C, Pruitt KD, Rawlings ND, Saier M, Sowdhamini R, Spedding M, Srinivasan N, Vriend G, Babbitt PC, Bateman A.
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</span><a href="/pubmed/25820941/">
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<span class="pubdate">2015 Jun;</span><span class="volume">83</span><span class="issue">(6)</span><span class="pages">:1005-13</span><span>. </span><span class="doi">doi: 10.1002/prot.24803. </span><span class="pubstatus">Epub 2015 Apr 22. </span><span class="pmid">PubMed PMID:
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25820941</span><span class="pmcid">; PubMed Central PMCID:
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</div>
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|
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|
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<div class="citation-wrap">
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<input id="cit398842" type="checkbox" name="cit398842" value="398842" class="citation-check"
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pmid="25731851"
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>
|
||
<label for="cit398842">select</label>
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</div>
|
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<div class="ncbi-docsum">
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||
<span class="authors">
|
||
Shaytan AK, Landsman D, Panchenko AR.
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</span><a href="/pubmed/25731851/">
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Nucleosome adaptability conferred by sequence and structural variations in histone H2A-H2B dimers.
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<span class="pubdate">2015 Jun;</span><span class="volume">32</span><span class="pages">:48-57</span><span>. </span><span class="doi">doi: 10.1016/j.sbi.2015.02.004. </span><span class="pubstatus">Epub 2015 Feb 27. </span><span class="pubtype">Review. </span><span class="pmid">PubMed PMID:
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25731851</span><span class="pmcid">; PubMed Central PMCID:
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PMC4512853</span><span>. </span>
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<div class="citation-wrap">
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<div class="citation">
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<div class="align-left">
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<input id="cit398738" type="checkbox" name="cit398738" value="398738" class="citation-check"
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|
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pmid="25294922"
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>
|
||
<label for="cit398738">select</label>
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</div>
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<div class="ncbi-docsum">
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||
<span class="authors">
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||
Yu YK, Capra JA, Stojmirović A, Landsman D, Altschul SF.
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</span><a href="/pubmed/25294922/">
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Log-odds sequence logos.
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<span class="pubdate">2015 Feb 1;</span><span class="volume">31</span><span class="issue">(3)</span><span class="pages">:324-31</span><span>. </span><span class="doi">doi: 10.1093/bioinformatics/btu634. </span><span class="pubstatus">Epub 2014 Oct 6. </span><span class="pmid">PubMed PMID:
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25294922</span><span class="pmcid">; PubMed Central PMCID:
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<div class="citation-wrap">
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<div class="citation">
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pmid="25368384"
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>
|
||
<label for="cit398777">select</label>
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</div>
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<div class="ncbi-docsum">
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||
<span class="authors">
|
||
Paul E, Zhu ZI, Landsman D, Morse RH.
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Genome-wide association of mediator and RNA polymerase II in wild-type and mediator mutant yeast.
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<span class="pubdate">2015 Jan;</span><span class="volume">35</span><span class="issue">(1)</span><span class="pages">:331-42</span><span>. </span><span class="doi">doi: 10.1128/MCB.00991-14. </span><span class="pubstatus">Epub 2014 Nov 3. </span><span class="pmid">PubMed PMID:
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25368384</span><span class="pmcid">; PubMed Central PMCID:
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PMC4295389</span><span>. </span>
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<div class="citation-wrap">
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<div class="citation">
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<input id="cit398795" type="checkbox" name="cit398795" value="398795" class="citation-check"
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pmid="25398906"
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>
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||
<label for="cit398795">select</label>
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||
</div>
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<div class="ncbi-docsum">
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<span class="authors"></span><a href="/pubmed/25398906/">
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25398906</span><span class="pmcid">; PubMed Central PMCID:
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PMC4383943</span><span>. </span>
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pmid="24259429"
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>
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||
<label for="cit398709">select</label>
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</div>
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||
<div class="ncbi-docsum">
|
||
<span class="authors"></span><a href="/pubmed/24259429/">
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Database resources of the National Center for Biotechnology Information.
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</a><span class="source">Nucleic Acids Res</span>.
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24259429</span><span class="pmcid">; PubMed Central PMCID:
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<div class="citation-wrap">
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pmid="23775126"
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>
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<label for="cit398845">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Deng T, Zhu ZI, Zhang S, Leng F, Cherukuri S, Hansen L, Mariño-Ramírez L, Meshorer E, Landsman D, Bustin M.
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</span><a href="/pubmed/23775126/">
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HMGN1 modulates nucleosome occupancy and DNase I hypersensitivity at the CpG island promoters of embryonic stem cells.
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<span class="pubdate">2013 Aug;</span><span class="volume">33</span><span class="issue">(16)</span><span class="pages">:3377-89</span><span>. </span><span class="doi">doi: 10.1128/MCB.00435-13. </span><span class="pubstatus">Epub 2013 Jun 17. </span><span class="pmid">PubMed PMID:
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23775126</span><span class="pmcid">; PubMed Central PMCID:
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<input id="cit398781" type="checkbox" name="cit398781" value="398781" class="citation-check"
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pmid="23844210"
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<label for="cit398781">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Enciso-Rodríguez FE, González C, Rodríguez EA, López CE, Landsman D, Barrero LS, Mariño-Ramírez L.
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</span><a href="/pubmed/23844210/">
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Identification of immunity related genes to study the Physalis peruviana--Fusarium oxysporum pathosystem.
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<span class="pubdate">2013;</span><span class="volume">8</span><span class="issue">(7)</span><span class="pages">:e68500</span><span>. </span><span class="doi">doi: 10.1371/journal.pone.0068500. </span><span class="pubstatus">Print 2013. </span><span class="pmid">PubMed PMID:
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23844210</span><span class="pmcid">; PubMed Central PMCID:
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PMC3701084</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit398756" type="checkbox" name="cit398756" value="398756" class="citation-check"
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pmid="23696635"
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<label for="cit398756">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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||
Luo J, Nijveen H, Attwood T, Judge D, Pongor S, Landsman D, Bishop M.
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23696635</span><span>. </span>
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<div class="citation-wrap">
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<div class="citation">
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<input id="cit398704" type="checkbox" name="cit398704" value="398704" class="citation-check"
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pmid="23193264"
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>
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<label for="cit398704">select</label>
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||
</div>
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||
<div class="ncbi-docsum">
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||
<span class="authors"></span><a href="/pubmed/23193264/">
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||
Database resources of the National Center for Biotechnology Information.
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</a><span class="source">Nucleic Acids Res</span>.
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<span class="pubdate">2013 Jan;</span><span class="volume">41</span><span class="issue">(Database issue)</span><span class="pages">:D8-D20</span><span>. </span><span class="doi">doi: 10.1093/nar/gks1189. </span><span class="pubstatus">Epub 2012 Nov 27. </span><span class="pmid">PubMed PMID:
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23193264</span><span class="pmcid">; PubMed Central PMCID:
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PMC3531099</span><span>. </span>
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<div class="citation-wrap">
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pmid="23031689"
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>
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||
<label for="cit398807">select</label>
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</div>
|
||
<div class="ncbi-docsum">
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||
<span class="authors">
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Novoa-Aponte L, León-Torres A, Patiño-Ruiz M, Cuesta-Bernal J, Salazar LM, Landsman D, Mariño-Ramírez L, Soto CY.
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</span><a href="/pubmed/23031689/">
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In silico identification and characterization of the ion transport specificity for P-type ATPases in the Mycobacterium tuberculosis complex.
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<span class="pubdate">2012 Oct 3;</span><span class="volume">12</span><span class="pages">:25</span><span>. </span><span class="doi">doi: 10.1186/1472-6807-12-25. </span><span class="pmid">PubMed PMID:
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23031689</span><span class="pmcid">; PubMed Central PMCID:
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PMC3573892</span><span>. </span>
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<div class="citation-wrap">
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<div class="citation">
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||
<input id="cit398809" type="checkbox" name="cit398809" value="398809" class="citation-check"
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pmid="22692006"
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>
|
||
<label for="cit398809">select</label>
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</div>
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||
<div class="ncbi-docsum">
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||
<span class="authors">
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||
Hansen L, Mariño-Ramírez L, Landsman D.
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</span><a href="/pubmed/22692006/">
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Differences in local genomic context of bound and unbound motifs.
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<span class="pubdate">2012 Sep 10;</span><span class="volume">506</span><span class="issue">(1)</span><span class="pages">:125-34</span><span>. </span><span class="doi">doi: 10.1016/j.gene.2012.06.005. </span><span class="pubstatus">Epub 2012 Jun 10. </span><span class="pmid">PubMed PMID:
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22692006</span><span class="pmcid">; PubMed Central PMCID:
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PMC3412921</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit398788" type="checkbox" name="cit398788" value="398788" class="citation-check"
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pmid="22650316"
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>
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||
<label for="cit398788">select</label>
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</div>
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||
<div class="ncbi-docsum">
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||
<span class="authors">
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Talbert PB, Ahmad K, Almouzni G, Ausió J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-López JM, Gorovsky MA, Hake SB, Hamkalo BA, Holec S, Jacobsen SE, Kamieniarz K, Khochbin S, Ladurner AG, Landsman D, Latham JA, Loppin B, Malik HS, Marzluff WF, Pehrson JR, Postberg J, Schneider R, Singh MB, Smith MM, Thompson E, Torres-Padilla ME, Tremethick DJ, Turner BM, Waterborg JH, Wollmann H, Yelagandula R, Zhu B, Henikoff S.
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A unified phylogeny-based nomenclature for histone variants.
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<span class="pubdate">2012 Jun 21;</span><span class="volume">5</span><span class="pages">:7</span><span>. </span><span class="doi">doi: 10.1186/1756-8935-5-7. </span><span class="pmid">PubMed PMID:
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22650316</span><span class="pmcid">; PubMed Central PMCID:
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PMC3380720</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit398829" type="checkbox" name="cit398829" value="398829" class="citation-check"
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pmid="22533342"
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>
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<label for="cit398829">select</label>
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</div>
|
||
<div class="ncbi-docsum">
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||
<span class="authors">
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||
Garzón-Martínez GA, Zhu ZI, Landsman D, Barrero LS, Mariño-Ramírez L.
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The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction.
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<span class="pubdate">2012 Apr 25;</span><span class="volume">13</span><span class="pages">:151</span><span>. </span><span class="doi">doi: 10.1186/1471-2164-13-151. </span><span class="pmid">PubMed PMID:
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22533342</span><span class="pmcid">; PubMed Central PMCID:
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PMC3488962</span><span>. </span>
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<div class="citation-wrap">
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|
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pmid="22140104"
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>
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<label for="cit398801">select</label>
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</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Federhen S, Feolo M, Fingerman IM, Geer LY, Helmberg W, Kapustin Y, Krasnov S, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Karsch-Mizrachi I, Ostell J, Panchenko A, Phan L, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, Wilbur WJ, Yaschenko E, Ye J.
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||
Database resources of the National Center for Biotechnology Information.
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</a><span class="source">Nucleic Acids Res</span>.
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<span class="pubdate">2012 Jan;</span><span class="volume">40</span><span class="issue">(Database issue)</span><span class="pages">:D13-25</span><span>. </span><span class="doi">doi: 10.1093/nar/gkr1184. </span><span class="pubstatus">Epub 2011 Dec 2. </span><span class="pmid">PubMed PMID:
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pmid="22242140"
|
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>
|
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<label for="cit398725">select</label>
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</div>
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<div class="ncbi-docsum">
|
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<span class="authors">
|
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Hansen L, Kim NK, Mariño-Ramírez L, Landsman D.
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|
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Analysis of biological features associated with meiotic recombination hot and cold spots in Saccharomyces cerevisiae.
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<span class="pubdate">2011;</span><span class="volume">6</span><span class="issue">(12)</span><span class="pages">:e29711</span><span>. </span><span class="doi">doi: 10.1371/journal.pone.0029711. </span><span class="pubstatus">Epub 2011 Dec 29. </span><span class="pmid">PubMed PMID:
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22242140</span><span class="pmcid">; PubMed Central PMCID:
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PMC3248464</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit398819" type="checkbox" name="cit398819" value="398819" class="citation-check"
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pmid="22046119"
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>
|
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<label for="cit398819">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
|
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Via A, De Las Rivas J, Attwood TK, Landsman D, Brazas MD, Leunissen JA, Tramontano A, Schneider MV.
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</span><a href="/pubmed/22046119/">
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Ten simple rules for developing a short bioinformatics training course.
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<span class="pubdate">2011 Oct;</span><span class="volume">7</span><span class="issue">(10)</span><span class="pages">:e1002245</span><span>. </span><span class="doi">doi: 10.1371/journal.pcbi.1002245. </span><span class="pubstatus">Epub 2011 Oct 27. </span><span class="pmid">PubMed PMID:
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22046119</span><span class="pmcid">; PubMed Central PMCID:
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PMC3203054</span><span>. </span>
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|
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<div class="citation-wrap">
|
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<div class="citation">
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<div class="align-left">
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<input id="cit398800" type="checkbox" name="cit398800" value="398800" class="citation-check"
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pmid="22025671"
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>
|
||
<label for="cit398800">select</label>
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</div>
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<div class="ncbi-docsum">
|
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<span class="authors">
|
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Mariño-Ramírez L, Levine KM, Morales M, Zhang S, Moreland RT, Baxevanis AD, Landsman D.
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</span><a href="/pubmed/22025671/">
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The Histone Database: an integrated resource for histones and histone fold-containing proteins.
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<span class="pubdate">2011;</span><span class="volume">2011</span><span class="pages">:bar048</span><span>. </span><span class="doi">doi: 10.1093/database/bar048. </span><span class="pubstatus">Print 2011. </span><span class="pmid">PubMed PMID:
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22025671</span><span class="pmcid">; PubMed Central PMCID:
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PMC3199919</span><span>. </span>
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</div>
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<div class="citation-wrap">
|
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<div class="citation">
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<div class="align-left">
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pmid="21952541"
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>
|
||
<label for="cit398760">select</label>
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||
</div>
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<div class="ncbi-docsum">
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||
<span class="authors">
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González-Pérez M, Murcia MI, Landsman D, Jordan IK, Mariño-Ramírez L.
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</span><a href="/pubmed/21952541/">
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Genome sequence of the Mycobacterium colombiense type strain, CECT 3035.
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<span class="pubdate">2011 Oct;</span><span class="volume">193</span><span class="issue">(20)</span><span class="pages">:5866-7</span><span>. </span><span class="doi">doi: 10.1128/JB.05928-11. </span><span class="pmid">PubMed PMID:
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21952541</span><span class="pmcid">; PubMed Central PMCID:
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PMC3187203</span><span>. </span>
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<div class="citation-wrap">
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<div class="citation">
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<div class="align-left">
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<input id="cit398836" type="checkbox" name="cit398836" value="398836" class="citation-check"
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||
pmid="21278158"
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>
|
||
<label for="cit398836">select</label>
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</div>
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||
<div class="ncbi-docsum">
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||
<span class="authors">
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||
Rochman M, Taher L, Kurahashi T, Cherukuri S, Uversky VN, Landsman D, Ovcharenko I, Bustin M.
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Effects of HMGN variants on the cellular transcription profile.
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<span class="pubdate">2011 May;</span><span class="volume">39</span><span class="issue">(10)</span><span class="pages">:4076-87</span><span>. </span><span class="doi">doi: 10.1093/nar/gkq1343. </span><span class="pubstatus">Epub 2011 Jan 28. </span><span class="pmid">PubMed PMID:
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21278158</span><span class="pmcid">; PubMed Central PMCID:
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PMC3105402</span><span>. </span>
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<div class="citation-wrap">
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||
<input id="cit398711" type="checkbox" name="cit398711" value="398711" class="citation-check"
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pmid="21205783"
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>
|
||
<label for="cit398711">select</label>
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</div>
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||
<div class="ncbi-docsum">
|
||
<span class="authors">
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Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Karsch Mizrachi I, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C.
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Towards BioDBcore: a community-defined information specification for biological databases.
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21205783</span><span class="pmcid">; PubMed Central PMCID:
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PMC3017395</span><span>. </span>
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<div class="citation-wrap">
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<div class="citation">
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<div class="align-left">
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||
<input id="cit398713" type="checkbox" name="cit398713" value="398713" class="citation-check"
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pmid="21097890"
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>
|
||
<label for="cit398713">select</label>
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</div>
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<div class="ncbi-docsum">
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||
<span class="authors">
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||
Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Federhen S, Feolo M, Fingerman IM, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Mizrachi I, Ostell J, Panchenko A, Phan L, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, Wilbur WJ, Yaschenko E, Ye J.
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Database resources of the National Center for Biotechnology Information.
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21097890</span><span class="pmcid">; PubMed Central PMCID:
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PMC3013733</span><span>. </span>
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<div class="citation-wrap">
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<div class="citation">
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<input id="cit398735" type="checkbox" name="cit398735" value="398735" class="citation-check"
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pmid="21097465"
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>
|
||
<label for="cit398735">select</label>
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||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Mizrachi IK, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C.
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||
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Towards BioDBcore: a community-defined information specification for biological databases.
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</a><span class="source">Nucleic Acids Res</span>.
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||
<span class="pubdate">2011 Jan;</span><span class="volume">39</span><span class="issue">(Database issue)</span><span class="pages">:D7-10</span><span>. </span><span class="doi">doi: 10.1093/nar/gkq1173. </span><span class="pubstatus">Epub 2010 Nov 18. </span><span class="pmid">PubMed PMID:
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21097465</span><span class="pmcid">; PubMed Central PMCID:
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PMC3013734</span><span>. </span>
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<div class="citation-wrap">
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pmid="20047965"
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<label for="cit398708">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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||
Hansen L, Mariño-Ramírez L, Landsman D.
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</span><a href="/pubmed/20047965/">
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Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome.
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<span class="pubdate">2010 Apr;</span><span class="volume">38</span><span class="issue">(6)</span><span class="pages">:1772-9</span><span>. </span><span class="doi">doi: 10.1093/nar/gkp1195. </span><span class="pubstatus">Epub 2010 Jan 4. </span><span class="pmid">PubMed PMID:
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20047965</span><span class="pmcid">; PubMed Central PMCID:
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PMC2847247</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit398731" type="checkbox" name="cit398731" value="398731" class="citation-check"
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pmid="19910364"
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>
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<label for="cit398731">select</label>
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</div>
|
||
<div class="ncbi-docsum">
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||
<span class="authors">
|
||
Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Federhen S, Feolo M, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Mizrachi I, Ostell J, Panchenko A, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, John Wilbur W, Yaschenko E, Ye J.
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</span><a href="/pubmed/19910364/">
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Database resources of the National Center for Biotechnology Information.
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</a><span class="source">Nucleic Acids Res</span>.
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<span class="pubdate">2010 Jan;</span><span class="volume">38</span><span class="issue">(Database issue)</span><span class="pages">:D5-16</span><span>. </span><span class="doi">doi: 10.1093/nar/gkp967. </span><span class="pubstatus">Epub 2009 Nov 12. </span><span class="pmid">PubMed PMID:
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19910364</span><span class="pmcid">; PubMed Central PMCID:
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PMC2808881</span><span>. </span>
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<input id="cit398787" type="checkbox" name="cit398787" value="398787" class="citation-check"
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pmid="19393174"
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>
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<label for="cit398787">select</label>
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</div>
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||
<div class="ncbi-docsum">
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<span class="authors">
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||
Huda A, Mariño-Ramírez L, Landsman D, Jordan IK.
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Repetitive DNA elements, nucleosome binding and human gene expression.
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<span class="pubdate">2009 May 1;</span><span class="volume">436</span><span class="issue">(1-2)</span><span class="pages">:12-22</span><span>. </span><span class="doi">doi: 10.1016/j.gene.2009.01.013. </span><span class="pubstatus">Epub 2009 Feb 5. </span><span class="pmid">PubMed PMID:
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19393174</span><span class="pmcid">; PubMed Central PMCID:
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PMC2921533</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit398715" type="checkbox" name="cit398715" value="398715" class="citation-check"
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pmid="20157475"
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>
|
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<label for="cit398715">select</label>
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</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
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||
Landsman D, Gentleman R, Kelso J, Francis Ouellette BF.
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</span><a href="/pubmed/20157475/">
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DATABASE: A new forum for biological databases and curation.
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20157475</span><span class="pmcid">; PubMed Central PMCID:
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PMC2790300</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit398747" type="checkbox" name="cit398747" value="398747" class="citation-check"
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pmid="18940862"
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>
|
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<label for="cit398747">select</label>
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</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Sayers EW, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, Federhen S, Feolo M, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Madden TL, Maglott DR, Miller V, Mizrachi I, Ostell J, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Yaschenko E, Ye J.
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Database resources of the National Center for Biotechnology Information.
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</a><span class="source">Nucleic Acids Res</span>.
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<span class="pubdate">2009 Jan;</span><span class="volume">37</span><span class="issue">(Database issue)</span><span class="pages">:D5-15</span><span>. </span><span class="doi">doi: 10.1093/nar/gkn741. </span><span class="pubstatus">Epub 2008 Oct 21. </span><span class="pmid">PubMed PMID:
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18940862</span><span class="pmcid">; PubMed Central PMCID:
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PMC2686545</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit398752" type="checkbox" name="cit398752" value="398752" class="citation-check"
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pmid="19378149"
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>
|
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<label for="cit398752">select</label>
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</div>
|
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<div class="ncbi-docsum">
|
||
<span class="authors">
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||
Mariño-Ramírez L, Tharakaraman K, Spouge JL, Landsman D.
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</span><a href="/pubmed/19378149/">
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Promoter analysis: gene regulatory motif identification with A-GLAM.
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<span class="pubdate">2009;</span><span class="volume">537</span><span class="pages">:263-76</span><span>. </span><span class="doi">doi: 10.1007/978-1-59745-251-9_13. </span><span class="pmid">PubMed PMID:
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19378149</span><span class="pmcid">; PubMed Central PMCID:
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||
PMC2702474</span><span>. </span>
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||
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|
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|
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<div class="citation-wrap">
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<div class="citation">
|
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|
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<input id="cit398825" type="checkbox" name="cit398825" value="398825" class="citation-check"
|
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pmid="19381547"
|
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|
||
>
|
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<label for="cit398825">select</label>
|
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</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Mariño-Ramírez L, Tharakaraman K, Bodenreider O, Spouge J, Landsman D.
|
||
</span><a href="/pubmed/19381547/">
|
||
Identification of cis-regulatory elements in gene co-expression networks using A-GLAM.
|
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</a><span class="source">Methods Mol Biol</span>.
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|
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|
||
<span class="pubdate">2009;</span><span class="volume">541</span><span class="pages">:1-22</span><span>. </span><span class="doi">doi: 10.1007/978-1-59745-243-4_1. </span><span class="pubtype">Review. </span><span class="pmid">PubMed PMID:
|
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19381547</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC2719765</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
|
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|
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|
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|
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|
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|
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<div class="citation-wrap">
|
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<div class="citation">
|
||
<div class="align-left">
|
||
<input id="cit398835" type="checkbox" name="cit398835" value="398835" class="citation-check"
|
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|
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pmid="18974838"
|
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|
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>
|
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<label for="cit398835">select</label>
|
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</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Ogurtsov AY, Mariño-Ramírez L, Johnson GR, Landsman D, Shabalina SA, Spiridonov NA.
|
||
</span><a href="/pubmed/18974838/">
|
||
Expression patterns of protein kinases correlate with gene architecture and evolutionary rates.
|
||
</a><span class="source">PLoS One</span>.
|
||
|
||
|
||
<span class="pubdate">2008;</span><span class="volume">3</span><span class="issue">(10)</span><span class="pages">:e3599</span><span>. </span><span class="doi">doi: 10.1371/journal.pone.0003599. </span><span class="pubstatus">Epub 2008 Oct 31. </span><span class="pmid">PubMed PMID:
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||
18974838</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC2572838</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
|
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|
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|
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|
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|
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|
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|
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<div class="citation-wrap">
|
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<div class="citation">
|
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<div class="align-left">
|
||
<input id="cit398785" type="checkbox" name="cit398785" value="398785" class="citation-check"
|
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|
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pmid="18485226"
|
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|
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>
|
||
<label for="cit398785">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Polavarapu N, Mariño-Ramírez L, Landsman D, McDonald JF, Jordan IK.
|
||
</span><a href="/pubmed/18485226/">
|
||
Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA.
|
||
</a><span class="source">BMC Genomics</span>.
|
||
|
||
|
||
<span class="pubdate">2008 May 17;</span><span class="volume">9</span><span class="pages">:226</span><span>. </span><span class="doi">doi: 10.1186/1471-2164-9-226. </span><span class="pmid">PubMed PMID:
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18485226</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC2397414</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
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|
||
|
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|
||
|
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|
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|
||
<div class="citation-wrap">
|
||
<div class="citation">
|
||
<div class="align-left">
|
||
<input id="cit398724" type="checkbox" name="cit398724" value="398724" class="citation-check"
|
||
|
||
pmid="18367472"
|
||
|
||
>
|
||
<label for="cit398724">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Tharakaraman K, Bodenreider O, Landsman D, Spouge JL, Mariño-Ramírez L.
|
||
</span><a href="/pubmed/18367472/">
|
||
The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site.
|
||
</a><span class="source">Nucleic Acids Res</span>.
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||
|
||
|
||
<span class="pubdate">2008 May;</span><span class="volume">36</span><span class="issue">(8)</span><span class="pages">:2777-86</span><span>. </span><span class="doi">doi: 10.1093/nar/gkn137. </span><span class="pubstatus">Epub 2008 Mar 26. </span><span class="pmid">PubMed PMID:
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18367472</span><span class="pmcid">; PubMed Central PMCID:
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||
PMC2377430</span><span>. </span>
|
||
</div>
|
||
</div>
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||
</div>
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|
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|
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|
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|
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|
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|
||
<div class="citation-wrap">
|
||
<div class="citation">
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||
<div class="align-left">
|
||
<input id="cit398786" type="checkbox" name="cit398786" value="398786" class="citation-check"
|
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|
||
pmid="18045790"
|
||
|
||
>
|
||
<label for="cit398786">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Edgar R, Federhen S, Feolo M, Geer LY, Helmberg W, Kapustin Y, Khovayko O, Landsman D, Lipman DJ, Madden TL, Maglott DR, Miller V, Ostell J, Pruitt KD, Schuler GD, Shumway M, Sequeira E, Sherry ST, Sirotkin K, Souvorov A, Starchenko G, Tatusov RL, Tatusova TA, Wagner L, Yaschenko E.
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||
</span><a href="/pubmed/18045790/">
|
||
Database resources of the National Center for Biotechnology Information.
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||
</a><span class="source">Nucleic Acids Res</span>.
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||
|
||
|
||
<span class="pubdate">2008 Jan;</span><span class="volume">36</span><span class="issue">(Database issue)</span><span class="pages">:D13-21</span><span>. </span><span class="doi">doi: 10.1093/nar/gkm1000. </span><span class="pubstatus">Epub 2007 Nov 27. </span><span class="pmid">PubMed PMID:
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||
18045790</span><span class="pmcid">; PubMed Central PMCID:
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||
PMC2238880</span><span>. </span>
|
||
</div>
|
||
</div>
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</div>
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|
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|
||
<div class="citation-wrap">
|
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<div class="citation">
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||
<div class="align-left">
|
||
<input id="cit398755" type="checkbox" name="cit398755" value="398755" class="citation-check"
|
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|
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pmid="17213805"
|
||
|
||
>
|
||
<label for="cit398755">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Riz I, Akimov SS, Eaker SS, Baxter KK, Lee HJ, Mariño-Ramírez L, Landsman D, Hawley TS, Hawley RG.
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||
</span><a href="/pubmed/17213805/">
|
||
TLX1/HOX11-induced hematopoietic differentiation blockade.
|
||
</a><span class="source">Oncogene</span>.
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||
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||
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||
<span class="pubdate">2007 Jun 14;</span><span class="volume">26</span><span class="issue">(28)</span><span class="pages">:4115-23</span><span>. </span><span class="doi">doi: 10.1038/sj.onc.1210185. </span><span class="pubstatus">Epub 2007 Jan 8. </span><span class="pmid">PubMed PMID:
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||
17213805</span><span class="pmcid">; PubMed Central PMCID:
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||
PMC1955382</span><span>. </span>
|
||
</div>
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||
</div>
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</div>
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|
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<div class="citation-wrap">
|
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<div class="citation">
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||
<div class="align-left">
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||
<input id="cit398792" type="checkbox" name="cit398792" value="398792" class="citation-check"
|
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|
||
pmid="17170002"
|
||
|
||
>
|
||
<label for="cit398792">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, Federhen S, Geer LY, Kapustin Y, Khovayko O, Landsman D, Lipman DJ, Madden TL, Maglott DR, Ostell J, Miller V, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Sirotkin K, Souvorov A, Starchenko G, Tatusov RL, Tatusova TA, Wagner L, Yaschenko E.
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||
</span><a href="/pubmed/17170002/">
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||
Database resources of the National Center for Biotechnology Information.
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||
</a><span class="source">Nucleic Acids Res</span>.
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||
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||
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||
<span class="pubdate">2007 Jan;</span><span class="volume">35</span><span class="issue">(Database issue)</span><span class="pages">:D5-12</span><span>. </span><span class="doi">doi: 10.1093/nar/gkl1031. </span><span class="pubstatus">Epub 2006 Dec 14. </span><span class="pmid">PubMed PMID:
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||
17170002</span><span class="pmcid">; PubMed Central PMCID:
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||
PMC1781113</span><span>. </span>
|
||
</div>
|
||
</div>
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||
</div>
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|
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|
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<div class="citation-wrap">
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<div class="citation">
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<div class="align-left">
|
||
<input id="cit398844" type="checkbox" name="cit398844" value="398844" class="citation-check"
|
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pmid="16961919"
|
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>
|
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<label for="cit398844">select</label>
|
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</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Tharakaraman K, Mariño-Ramírez L, Sheetlin SL, Landsman D, Spouge JL.
|
||
</span><a href="/pubmed/16961919/">
|
||
Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements.
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||
</a><span class="source">BMC Bioinformatics</span>.
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||
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||
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||
<span class="pubdate">2006 Sep 8;</span><span class="volume">7</span><span class="pages">:408</span><span>. </span><span class="doi">doi: 10.1186/1471-2105-7-408. </span><span class="pmid">PubMed PMID:
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16961919</span><span class="pmcid">; PubMed Central PMCID:
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||
PMC1599759</span><span>. </span>
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||
</div>
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||
</div>
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</div>
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<div class="citation-wrap">
|
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<div class="citation">
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<div class="align-left">
|
||
<input id="cit398837" type="checkbox" name="cit398837" value="398837" class="citation-check"
|
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pmid="16345076"
|
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>
|
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<label for="cit398837">select</label>
|
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</div>
|
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<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Mariño-Ramírez L, Hsu B, Baxevanis AD, Landsman D.
|
||
</span><a href="/pubmed/16345076/">
|
||
The Histone Database: a comprehensive resource for histones and histone fold-containing proteins.
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||
</a><span class="source">Proteins</span>.
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||
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||
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||
<span class="pubdate">2006 Mar 1;</span><span class="volume">62</span><span class="issue">(4)</span><span class="pages">:838-42</span><span>. </span><span class="doi">doi: 10.1002/prot.20814. </span><span class="pmid">PubMed PMID:
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16345076</span><span class="pmcid">; PubMed Central PMCID:
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||
PMC1800941</span><span>. </span>
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||
</div>
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||
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<div class="citation-wrap">
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<div class="citation">
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<div class="align-left">
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||
<input id="cit398766" type="checkbox" name="cit398766" value="398766" class="citation-check"
|
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pmid="17184543"
|
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>
|
||
<label for="cit398766">select</label>
|
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</div>
|
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<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Mariño-Ramírez L, Jordan IK, Landsman D.
|
||
</span><a href="/pubmed/17184543/">
|
||
Multiple independent evolutionary solutions to core histone gene regulation.
|
||
</a><span class="source">Genome Biol</span>.
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||
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||
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||
<span class="pubdate">2006;</span><span class="volume">7</span><span class="issue">(12)</span><span class="pages">:R122</span><span>. </span><span class="doi">doi: 10.1186/gb-2006-7-12-r122. </span><span class="pmid">PubMed PMID:
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17184543</span><span class="pmcid">; PubMed Central PMCID:
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||
PMC1794435</span><span>. </span>
|
||
</div>
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</div>
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</div>
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<div class="citation-wrap">
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<div class="citation">
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|
||
<input id="cit398818" type="checkbox" name="cit398818" value="398818" class="citation-check"
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pmid="16199888"
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>
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<label for="cit398818">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Eriksson PR, Mendiratta G, McLaughlin NB, Wolfsberg TG, Mariño-Ramírez L, Pompa TA, Jainerin M, Landsman D, Shen CH, Clark DJ.
|
||
</span><a href="/pubmed/16199888/">
|
||
Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements.
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||
</a><span class="source">Mol Cell Biol</span>.
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||
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||
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||
<span class="pubdate">2005 Oct;</span><span class="volume">25</span><span class="issue">(20)</span><span class="pages">:9127-37</span><span>. </span><span class="doi">doi: 10.1128/MCB.25.20.9127-9137.2005. </span><span class="pmid">PubMed PMID:
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16199888</span><span class="pmcid">; PubMed Central PMCID:
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PMC1265784</span><span>. </span>
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||
</div>
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<div class="citation-wrap">
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<div class="citation">
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<div class="align-left">
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<input id="cit398824" type="checkbox" name="cit398824" value="398824" class="citation-check"
|
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pmid="16209651"
|
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>
|
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<label for="cit398824">select</label>
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</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Mariño-Ramírez L, Kann MG, Shoemaker BA, Landsman D.
|
||
</span><a href="/pubmed/16209651/">
|
||
Histone structure and nucleosome stability.
|
||
</a><span class="source">Expert Rev Proteomics</span>.
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||
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||
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||
<span class="pubdate">2005 Oct;</span><span class="volume">2</span><span class="issue">(5)</span><span class="pages">:719-29</span><span>. </span><span class="doi">doi: 10.1586/14789450.2.5.719. </span><span class="pubtype">Review. </span><span class="pmid">PubMed PMID:
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16209651</span><span class="pmcid">; PubMed Central PMCID:
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PMC1831843</span><span>. </span>
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||
</div>
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||
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<div class="citation-wrap">
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||
<input id="cit398736" type="checkbox" name="cit398736" value="398736" class="citation-check"
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pmid="15961489"
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>
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<label for="cit398736">select</label>
|
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</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Tharakaraman K, Mariño-Ramírez L, Sheetlin S, Landsman D, Spouge JL.
|
||
</span><a href="/pubmed/15961489/">
|
||
Alignments anchored on genomic landmarks can aid in the identification of regulatory elements.
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||
</a><span class="source">Bioinformatics</span>.
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||
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||
|
||
<span class="pubdate">2005 Jun;</span><span class="volume">21 Suppl 1</span><span class="issue">(Suppl 1)</span><span class="pages">:i440-8</span><span>. </span><span class="doi">doi: 10.1093/bioinformatics/bti1028. </span><span class="pmid">PubMed PMID:
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15961489</span><span class="pmcid">; PubMed Central PMCID:
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||
PMC1317086</span><span>. </span>
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||
</div>
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<div class="citation-wrap">
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<input id="cit398733" type="checkbox" name="cit398733" value="398733" class="citation-check"
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pmid="16093685"
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>
|
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<label for="cit398733">select</label>
|
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</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Mariño-Ramírez L, Lewis KC, Landsman D, Jordan IK.
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||
</span><a href="/pubmed/16093685/">
|
||
Transposable elements donate lineage-specific regulatory sequences to host genomes.
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||
</a><span class="source">Cytogenet Genome Res</span>.
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||
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||
<span class="pubdate">2005;</span><span class="volume">110</span><span class="issue">(1-4)</span><span class="pages">:333-41</span><span>. </span><span class="doi">doi: 10.1159/000084965. </span><span class="pubtype">Review. </span><span class="pmid">PubMed PMID:
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16093685</span><span class="pmcid">; PubMed Central PMCID:
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||
PMC1803082</span><span>. </span>
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||
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<div class="citation-wrap">
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<input id="cit398770" type="checkbox" name="cit398770" value="398770" class="citation-check"
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pmid="15235610"
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<label for="cit398770">select</label>
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</div>
|
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<div class="ncbi-docsum">
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<span class="authors">
|
||
Roh TY, Ngau WC, Cui K, Landsman D, Zhao K.
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||
</span><a href="/pubmed/15235610/">
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||
High-resolution genome-wide mapping of histone modifications.
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||
</a><span class="source">Nat Biotechnol</span>.
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||
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||
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||
<span class="pubdate">2004 Aug;</span><span class="volume">22</span><span class="issue">(8)</span><span class="pages">:1013-6</span><span>. </span><span class="doi">doi: 10.1038/nbt990. </span><span class="pubstatus">Epub 2004 Jul 4. </span><span class="pmid">PubMed PMID:
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||
15235610</span><span>. </span>
|
||
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<div class="citation-wrap">
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<input id="cit398764" type="checkbox" name="cit398764" value="398764" class="citation-check"
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pmid="14963262"
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>
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<label for="cit398764">select</label>
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</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Mariño-Ramírez L, Spouge JL, Kanga GC, Landsman D.
|
||
</span><a href="/pubmed/14963262/">
|
||
Statistical analysis of over-represented words in human promoter sequences.
|
||
</a><span class="source">Nucleic Acids Res</span>.
|
||
|
||
|
||
<span class="pubdate">2004;</span><span class="volume">32</span><span class="issue">(3)</span><span class="pages">:949-58</span><span>. </span><span class="doi">doi: 10.1093/nar/gkh246. </span><span class="pubstatus">Print 2004. </span><span class="pmid">PubMed PMID:
|
||
14963262</span><span class="pmcid">; PubMed Central PMCID:
|
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PMC373387</span><span>. </span>
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Sullivan SA, Landsman D.
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</span><a href="/pubmed/14870656/">
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Mining core histone sequences from public protein databases.
|
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</a><span class="source">Methods Enzymol</span>.
|
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|
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|
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<span class="pubdate">2004;</span><span class="volume">375</span><span class="pages">:3-20</span><span>. </span><span class="doi">doi: 10.1016/s0076-6879(03)75001-0. </span><span class="pmid">PubMed PMID:
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