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<h1>My Bibliography</h1>
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<h2 id="bibname"><a href="./">David Landsman, PhD's Bibliography</a></h2>
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<span id="total-count">165 citations,</span> Sort by
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<div class="citation">
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<div class="align-left">
|
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<input id="cit80394495" type="checkbox" name="cit80394495" value="80394495" class="citation-check"
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pmid="39494517"
|
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|
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>
|
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<label for="cit80394495">select</label>
|
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</div>
|
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<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Galperin MY, Vera Alvarez R, Karamycheva S, Makarova KS, Wolf YI, Landsman D, Koonin EV.
|
||
</span><a href="/pubmed/39494517/">
|
||
COG database update 2024.
|
||
</a><span class="source">Nucleic Acids Res</span>.
|
||
|
||
|
||
<span class="pubdate">2025 Jan 6;</span><span class="volume">53</span><span class="issue">(D1)</span><span class="pages">:D356-D363</span><span>. </span><span class="doi">doi: 10.1093/nar/gkae983. </span><span class="pmid">PubMed PMID:
|
||
39494517</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC11701660</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
|
||
|
||
|
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<div class="citation-wrap">
|
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<div class="citation">
|
||
<div class="align-left">
|
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<input id="cit80394590" type="checkbox" name="cit80394590" value="80394590" class="citation-check"
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|
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pmid="39121853"
|
||
|
||
>
|
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<label for="cit80394590">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Zhou BR, Feng H, Huang F, Zhu I, Portillo-Ledesma S, Shi D, Zaret KS, Schlick T, Landsman D, Wang Q, Bai Y.
|
||
</span><a href="/pubmed/39121853/">
|
||
Structural insights into the cooperative nucleosome recognition and chromatin opening by FOXA1 and GATA4.
|
||
</a><span class="source">Mol Cell</span>.
|
||
|
||
|
||
<span class="pubdate">2024 Aug 22;</span><span class="volume">84</span><span class="issue">(16)</span><span class="pages">:3061-3079.e10</span><span>. </span><span class="doi">doi: 10.1016/j.molcel.2024.07.016. </span><span class="pubstatus">Epub 2024 Aug 8. </span><span class="pmid">PubMed PMID:
|
||
39121853</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC11344660</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<div class="citation-wrap">
|
||
<div class="citation">
|
||
<div class="align-left">
|
||
<input id="cit72790024" type="checkbox" name="cit72790024" value="72790024" class="citation-check"
|
||
|
||
pmid="38293962"
|
||
|
||
>
|
||
<label for="cit72790024">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Peng Y, Song W, Teif VB, Ovcharenko I, Landsman D, Panchenko AR.
|
||
</span><a href="/pubmed/38293962/">
|
||
Detection of new pioneer transcription factors as cell-type-specific nucleosome binders.
|
||
</a><span class="source">Elife</span>.
|
||
|
||
|
||
<span class="pubdate">2024 Jan 31;</span><span class="volume">12</span><span>. </span><span class="doi">doi: 10.7554/eLife.88936. </span><span class="pmid">PubMed PMID:
|
||
38293962</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC10945518</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<div class="citation-wrap">
|
||
<div class="citation">
|
||
<div class="align-left">
|
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<input id="cit72357222" type="checkbox" name="cit72357222" value="72357222" class="citation-check"
|
||
|
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pmid="38191464"
|
||
|
||
>
|
||
<label for="cit72357222">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Alvarez RV, Landsman D.
|
||
</span><a href="/pubmed/38191464/">
|
||
GTax: improving de novo transcriptome assembly by removing foreign RNA contamination.
|
||
</a><span class="source">Genome Biol</span>.
|
||
|
||
|
||
<span class="pubdate">2024 Jan 8;</span><span class="volume">25</span><span class="issue">(1)</span><span class="pages">:12</span><span>. </span><span class="doi">doi: 10.1186/s13059-023-03141-2. </span><span class="pmid">PubMed PMID:
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38191464</span><span class="pmcid">; PubMed Central PMCID:
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PMC10773103</span><span>. </span>
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</div>
|
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</div>
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<div class="citation-wrap">
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<div class="citation">
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pmid="37425841"
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>
|
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<label for="cit67893425">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Peng Y, Song W, Teif VB, Ovcharenko I, Landsman D, Panchenko AR.
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Detection of new pioneer transcription factors as cell-type specific nucleosome binders.
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<span class="pubdate">2023 Nov 23;</span><span>. </span><span class="doi">doi: 10.1101/2023.05.10.540098. </span><span class="pmid">PubMed PMID:
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37425841</span><span class="pmcid">; PubMed Central PMCID:
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PMC10327179</span><span>. </span>
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<div class="citation-wrap">
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<div class="citation">
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<div class="align-left">
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pmid="37884340"
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>
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<label for="cit69957262">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Zhu I, Landsman D.
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</span><a href="/pubmed/37884340/">
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Clustered and diverse transcription factor binding underlies cell type specificity of enhancers for housekeeping genes.
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</a><span class="source">Genome Res</span>.
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<span class="pubdate">2023 Oct;</span><span class="volume">33</span><span class="issue">(10)</span><span class="pages">:1662-1672</span><span>. </span><span class="doi">doi: 10.1101/gr.278130.123. </span><span class="pubstatus">Epub 2023 Oct 26. </span><span class="pmid">PubMed PMID:
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37884340</span><span class="pmcid">; PubMed Central PMCID:
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PMC10691539</span><span>. </span>
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<div class="citation-wrap">
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<div class="citation">
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<div class="align-left">
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pmid="36180920"
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>
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<label for="cit62594323">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Seal RL, Denny P, Bruford EA, Gribkova AK, Landsman D, Marzluff WF, McAndrews M, Panchenko AR, Shaytan AK, Talbert PB.
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</span><a href="/pubmed/36180920/">
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A standardized nomenclature for mammalian histone genes.
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<span class="pubdate">2022 Oct 1;</span><span class="volume">15</span><span class="issue">(1)</span><span class="pages">:34</span><span>. </span><span class="doi">doi: 10.1186/s13072-022-00467-2. </span><span class="pubtype">Review. </span><span class="pmid">PubMed PMID:
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36180920</span><span class="pmcid">; PubMed Central PMCID:
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PMC9526256</span><span>. </span>
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<div class="citation-wrap">
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<div class="citation">
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<div class="align-left">
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<input id="cit60573513" type="checkbox" name="cit60573513" value="60573513" class="citation-check"
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pmid="35761366"
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>
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<label for="cit60573513">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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He B, Zhu I, Postnikov Y, Furusawa T, Jenkins L, Nanduri R, Bustin M, Landsman D.
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</span><a href="/pubmed/35761366/">
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Multiple epigenetic factors co-localize with HMGN proteins in A-compartment chromatin.
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<span class="pubdate">2022 Jun 27;</span><span class="volume">15</span><span class="issue">(1)</span><span class="pages">:23</span><span>. </span><span class="doi">doi: 10.1186/s13072-022-00457-4. </span><span class="pmid">PubMed PMID:
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35761366</span><span class="pmcid">; PubMed Central PMCID:
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PMC9235084</span><span>. </span>
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</div>
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<div class="citation-wrap">
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<div class="citation">
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<div class="align-left">
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<input id="cit58407724" type="checkbox" name="cit58407724" value="58407724" class="citation-check"
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pmid="35166834"
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>
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<label for="cit58407724">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Li S, Peng Y, Landsman D, Panchenko AR.
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DNA methylation cues in nucleosome geometry, stability and unwrapping.
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<span class="pubdate">2022 Feb 28;</span><span class="volume">50</span><span class="issue">(4)</span><span class="pages">:1864-1874</span><span>. </span><span class="doi">doi: 10.1093/nar/gkac097. </span><span class="pmid">PubMed PMID:
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35166834</span><span class="pmcid">; PubMed Central PMCID:
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PMC8881801</span><span>. </span>
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<div class="citation-wrap">
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<div class="citation">
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<div class="align-left">
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<input id="cit57666271" type="checkbox" name="cit57666271" value="57666271" class="citation-check"
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pmid="34785526"
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>
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<label for="cit57666271">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Sarkar D, Zhu ZI, Knoll ER, Paul E, Landsman D, Morse RH.
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Mediator dynamics during heat shock in budding yeast.
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<span class="pubdate">2022 Jan;</span><span class="volume">32</span><span class="issue">(1)</span><span class="pages">:111-123</span><span>. </span><span class="doi">doi: 10.1101/gr.275750.121. </span><span class="pubstatus">Epub 2021 Nov 16. </span><span class="pmid">PubMed PMID:
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34785526</span><span class="pmcid">; PubMed Central PMCID:
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PMC8744673</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit56626981" type="checkbox" name="cit56626981" value="56626981" class="citation-check"
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<label for="cit56626981">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Peng Y, Li S, Onufriev A, Landsman D, Panchenko AR.
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Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails.
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<span class="pubdate">2021 Sep 6;</span><span class="volume">12</span><span class="issue">(1)</span><span class="pages">:5280</span><span>. </span><span class="doi">doi: 10.1038/s41467-021-25568-6. </span><span class="pmid">PubMed PMID:
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34489435</span><span class="pmcid">; PubMed Central PMCID:
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PMC8421395</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit53636420" type="checkbox" name="cit53636420" value="53636420" class="citation-check"
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pmid="33872375"
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<label for="cit53636420">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Zhu I, Song W, Ovcharenko I, Landsman D.
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A model of active transcription hubs that unifies the roles of active promoters and enhancers.
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<span class="pubdate">2021 May 7;</span><span class="volume">49</span><span class="issue">(8)</span><span class="pages">:4493-4505</span><span>. </span><span class="doi">doi: 10.1093/nar/gkab235. </span><span class="pmid">PubMed PMID:
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33872375</span><span class="pmcid">; PubMed Central PMCID:
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PMC8096258</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit51329394" type="checkbox" name="cit51329394" value="51329394" class="citation-check"
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pmid="33279866"
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<label for="cit51329394">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Peng Y, Li S, Landsman D, Panchenko AR.
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</span><a href="/pubmed/33279866/">
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Histone tails as signaling antennas of chromatin.
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</a><span class="source">Curr Opin Struct Biol</span>.
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<span class="pubdate">2021 Apr;</span><span class="volume">67</span><span class="pages">:153-160</span><span>. </span><span class="doi">doi: 10.1016/j.sbi.2020.10.018. </span><span class="pubstatus">Epub 2020 Dec 3. </span><span class="pubtype">Review. </span><span class="pmid">PubMed PMID:
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33279866</span><span class="pmcid">; PubMed Central PMCID:
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PMC8096652</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit50294321" type="checkbox" name="cit50294321" value="50294321" class="citation-check"
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pmid="33098859"
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<label for="cit50294321">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Peng Y, Markov Y, Goncearenco A, Landsman D, Panchenko AR.
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</span><a href="/pubmed/33098859/">
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Human Histone Interaction Networks: An Old Concept, New Trends.
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<span class="pubdate">2021 Mar 19;</span><span class="volume">433</span><span class="issue">(6)</span><span class="pages">:166684</span><span>. </span><span class="doi">doi: 10.1016/j.jmb.2020.10.018. </span><span class="pubstatus">Epub 2020 Oct 22. </span><span class="pmid">PubMed PMID:
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33098859</span><span class="pmcid">; PubMed Central PMCID:
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PMC7987645</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit52223823" type="checkbox" name="cit52223823" value="52223823" class="citation-check"
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Alvarez RV, Mariño-Ramírez L, Landsman D.
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Transcriptome annotation in the cloud: complexity, best practices, and cost.
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33511996</span><span class="pmcid">; PubMed Central PMCID:
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PMC7845158</span><span>. </span>
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pmid="33167031"
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<label for="cit50336805">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Galperin MY, Wolf YI, Makarova KS, Vera Alvarez R, Landsman D, Koonin EV.
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33167031</span><span class="pmcid">; PubMed Central PMCID:
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PMC7778934</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit51568097" type="checkbox" name="cit51568097" value="51568097" class="citation-check"
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pmid="33410471"
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<label for="cit51568097">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Vera Alvarez R, Pongor L, Mariño-Ramírez L, Landsman D.
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<span class="pubdate">2021 Jan 7;</span><span class="volume">10</span><span class="issue">(1)</span><span>. </span><span class="doi">doi: 10.1093/gigascience/giaa141. </span><span class="pmid">PubMed PMID:
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33410471</span><span class="pmcid">; PubMed Central PMCID:
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PMC7788391</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit51329393" type="checkbox" name="cit51329393" value="51329393" class="citation-check"
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pmid="33299912"
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<label for="cit51329393">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Peng Y, Markov Y, Goncearenco A, Landsman D, Panchenko AR.
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</span><a href="/pubmed/33299912/">
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Data sets on human histone interaction networks.
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33299912</span><span class="pmcid">; PubMed Central PMCID:
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PMC7701981</span><span>. </span>
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<div class="citation-wrap">
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<input id="cit46176929" type="checkbox" name="cit46176929" value="46176929" class="citation-check"
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pmid="32182349"
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</div>
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||
<div class="ncbi-docsum">
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<span class="authors">
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Knoll ER, Zhu ZI, Sarkar D, Landsman D, Morse RH.
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</span><a href="/pubmed/32182349/">
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Kin28 depletion increases association of TFIID subunits Taf1 and Taf4 with promoters in Saccharomyces cerevisiae.
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<span class="pubdate">2020 May 7;</span><span class="volume">48</span><span class="issue">(8)</span><span class="pages">:4244-4255</span><span>. </span><span class="doi">doi: 10.1093/nar/gkaa165. </span><span class="pmid">PubMed PMID:
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32182349</span><span class="pmcid">; PubMed Central PMCID:
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PMC7192586</span><span>. </span>
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<input id="cit47142674" type="checkbox" name="cit47142674" value="47142674" class="citation-check"
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pmid="32321568"
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</div>
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<div class="ncbi-docsum">
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||
<span class="authors">
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Pongor LS, Gross JM, Vera Alvarez R, Murai J, Jang SM, Zhang H, Redon C, Fu H, Huang SY, Thakur B, Baris A, Marino-Ramirez L, Landsman D, Aladjem MI, Pommier Y.
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</span><a href="/pubmed/32321568/">
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BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks.
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<span class="pubdate">2020 Apr 22;</span><span class="volume">13</span><span class="issue">(1)</span><span class="pages">:21</span><span>. </span><span class="doi">doi: 10.1186/s13072-020-00343-x. </span><span class="pmid">PubMed PMID:
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32321568</span><span class="pmcid">; PubMed Central PMCID:
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|
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pmid="30379987"
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>
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<label for="cit398846">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Vera Alvarez R, Pongor LS, Mariño-Ramírez L, Landsman D.
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</span><a href="/pubmed/30379987/">
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TPMCalculator: one-step software to quantify mRNA abundance of genomic features.
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<span class="pubdate">2019 Jun 1;</span><span class="volume">35</span><span class="issue">(11)</span><span class="pages">:1960-1962</span><span>. </span><span class="doi">doi: 10.1093/bioinformatics/bty896. </span><span class="pmid">PubMed PMID:
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30379987</span><span class="pmcid">; PubMed Central PMCID:
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pmid="30991239"
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>
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<label for="cit7313306">select</label>
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<div class="ncbi-docsum">
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<span class="authors">
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Kale S, Goncearenco A, Markov Y, Landsman D, Panchenko AR.
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</span><a href="/pubmed/30991239/">
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Molecular recognition of nucleosomes by binding partners.
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<span class="pubdate">2019 Jun;</span><span class="volume">56</span><span class="pages">:164-170</span><span>. </span><span class="doi">doi: 10.1016/j.sbi.2019.03.010. </span><span class="pubstatus">Epub 2019 Apr 13. </span><span class="pubtype">Review. </span><span class="pmid">PubMed PMID:
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30991239</span><span class="pmcid">; PubMed Central PMCID:
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pmid="31088352"
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>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Gamez RM, Rodríguez F, Vidal NM, Ramirez S, Vera Alvarez R, Landsman D, Mariño-Ramírez L.
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</span><a href="/pubmed/31088352/">
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Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006.
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<span class="pubdate">2019 May 14;</span><span class="volume">20</span><span class="issue">(1)</span><span class="pages">:378</span><span>. </span><span class="doi">doi: 10.1186/s12864-019-5763-5. </span><span class="pmid">PubMed PMID:
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31088352</span><span class="pmcid">; PubMed Central PMCID:
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PMC6518610</span><span>. </span>
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pmid="30540252"
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<label for="cit398720">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Knoll ER, Zhu ZI, Sarkar D, Landsman D, Morse RH.
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Role of the pre-initiation complex in Mediator recruitment and dynamics.
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pmid="30532006"
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<label for="cit398748">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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He B, Deng T, Zhu I, Furusawa T, Zhang S, Tang W, Postnikov Y, Ambs S, Li CC, Livak F, Landsman D, Bustin M.
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<span class="pubdate">2018 Dec 7;</span><span class="volume">9</span><span class="issue">(1)</span><span class="pages">:5240</span><span>. </span><span class="doi">doi: 10.1038/s41467-018-07687-9. </span><span class="pmid">PubMed PMID:
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pmid="30341436"
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<label for="cit398705">select</label>
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</div>
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<div class="ncbi-docsum">
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Shaytan AK, Xiao H, Armeev GA, Gaykalova DA, Komarova GA, Wu C, Studitsky VM, Landsman D, Panchenko AR.
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pmid="30012561"
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Ciftci-Yilmaz S, Au WC, Mishra PK, Eisenstatt JR, Chang J, Dawson AR, Zhu I, Rahman M, Bilke S, Costanzo M, Baryshnikova A, Myers CL, Meltzer PS, Landsman D, Baker RE, Boone C, Basrai MA.
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A Genome-Wide Screen Reveals a Role for the HIR Histone Chaperone Complex in Preventing Mislocalization of Budding Yeast CENP-A.
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30012561</span><span class="pmcid">; PubMed Central PMCID:
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pmid="29844108"
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<label for="cit398740">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Deng T, Zhu ZI, Zhang S, Leng F, Cherukuri S, Hansen L, Mariño-Ramírez L, Meshorer E, Landsman D, Bustin M.
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Correction for Deng et al., "HMGN1 Modulates Nucleosome Occupancy and DNase I Hypersensitivity at the CpG Island Promoters of Embryonic Stem Cells".
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29844108</span><span class="pmcid">; PubMed Central PMCID:
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</div>
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<div class="ncbi-docsum">
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pmid="29462141"
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Salinero AC, Knoll ER, Zhu ZI, Landsman D, Curcio MJ, Morse RH.
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The Mediator co-activator complex regulates Ty1 retromobility by controlling the balance between Ty1i and Ty1 promoters.
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<span class="pubdate">2018 Feb;</span><span class="volume">14</span><span class="issue">(2)</span><span class="pages">:e1007232</span><span>. </span><span class="doi">doi: 10.1371/journal.pgen.1007232. </span><span class="pubstatus">eCollection 2018 Feb. </span><span class="pmid">PubMed PMID:
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Alvarez RV, Li S, Landsman D, Ovcharenko I.
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28968739</span><span class="pmcid">; PubMed Central PMCID:
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pmid="29140470"
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<label for="cit398830">select</label>
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</div>
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<div class="ncbi-docsum">
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Database resources of the National Center for Biotechnology Information.
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<label for="cit398726">select</label>
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Xiao H, Wang F, Wisniewski J, Shaytan AK, Ghirlando R, FitzGerald PC, Huang Y, Wei D, Li S, Landsman D, Panchenko AR, Wu C.
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Molecular basis of CENP-C association with the CENP-A nucleosome at yeast centromeres.
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</div>
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<div class="ncbi-docsum">
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<span class="authors">
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Shaytan AK, Xiao H, Armeev GA, Wu C, Landsman D, Panchenko AR.
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Hydroxyl-radical footprinting combined with molecular modeling identifies unique features of DNA conformation and nucleosome positioning.
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<div class="ncbi-docsum">
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<span class="authors">
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Li S, Alvarez RV, Sharan R, Landsman D, Ovcharenko I.
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Quantifying deleterious effects of regulatory variants.
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PMC5389506</span><span>. </span>
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|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
El Kennani S, Adrait A, Shaytan AK, Khochbin S, Bruley C, Panchenko AR, Landsman D, Pflieger D, Govin J.
|
||
</span><a href="/pubmed/28096900/">
|
||
MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones.
|
||
</a><span class="source">Epigenetics Chromatin</span>.
|
||
|
||
|
||
<span class="pubdate">2017;</span><span class="volume">10</span><span class="pages">:2</span><span>. </span><span class="doi">doi: 10.1186/s13072-016-0109-x. </span><span class="pubstatus">eCollection 2017. </span><span class="pmid">PubMed PMID:
|
||
28096900</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC5223428</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
|
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|
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|
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|
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|
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|
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<div class="citation-wrap">
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<input id="cit398728" type="checkbox" name="cit398728" value="398728" class="citation-check"
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pmid="27899561"
|
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|
||
>
|
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<label for="cit398728">select</label>
|
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</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors"></span><a href="/pubmed/27899561/">
|
||
Database Resources of the National Center for Biotechnology Information.
|
||
</a><span class="source">Nucleic Acids Res</span>.
|
||
|
||
|
||
<span class="pubdate">2017 Jan 4;</span><span class="volume">45</span><span class="issue">(D1)</span><span class="pages">:D12-D17</span><span>. </span><span class="doi">doi: 10.1093/nar/gkw1071. </span><span class="pubstatus">Epub 2016 Nov 28. </span><span class="pmid">PubMed PMID:
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27899561</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC5210554</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
|
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|
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<div class="citation-wrap">
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<input id="cit398742" type="checkbox" name="cit398742" value="398742" class="citation-check"
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pmid="28605765"
|
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<label for="cit398742">select</label>
|
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</div>
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<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Vera Alvarez R, Medeiros Vidal N, Garzón-Martínez GA, Barrero LS, Landsman D, Mariño-Ramírez L.
|
||
</span><a href="/pubmed/28605765/">
|
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Workflow and web application for annotating NCBI BioProject transcriptome data.
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</a><span class="source">Database (Oxford)</span>.
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|
||
|
||
<span class="pubdate">2017 Jan 1;</span><span class="volume">2017</span><span>. </span><span class="doi">doi: 10.1093/database/bax008. </span><span class="pmid">PubMed PMID:
|
||
28605765</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC5467576</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
|
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|
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|
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|
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|
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|
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|
||
<div class="citation-wrap">
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<div class="citation">
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<div class="align-left">
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<input id="cit398841" type="checkbox" name="cit398841" value="398841" class="citation-check"
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pmid="27871221"
|
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>
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<label for="cit398841">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Acevedo-Luna N, Mariño-Ramírez L, Halbert A, Hansen U, Landsman D, Spouge JL.
|
||
</span><a href="/pubmed/27871221/">
|
||
Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules.
|
||
</a><span class="source">BMC Bioinformatics</span>.
|
||
|
||
|
||
<span class="pubdate">2016 Nov 21;</span><span class="volume">17</span><span class="issue">(1)</span><span class="pages">:479</span><span>. </span><span class="doi">doi: 10.1186/s12859-016-1354-5. </span><span class="pmid">PubMed PMID:
|
||
27871221</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC5117513</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
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|
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|
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|
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|
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|
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<div class="citation-wrap">
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<div class="citation">
|
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<div class="align-left">
|
||
<input id="cit398734" type="checkbox" name="cit398734" value="398734" class="citation-check"
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pmid="27112571"
|
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>
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<label for="cit398734">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Zhang S, Zhu I, Deng T, Furusawa T, Rochman M, Vacchio MS, Bosselut R, Yamane A, Casellas R, Landsman D, Bustin M.
|
||
</span><a href="/pubmed/27112571/">
|
||
HMGN proteins modulate chromatin regulatory sites and gene expression during activation of naïve B cells.
|
||
</a><span class="source">Nucleic Acids Res</span>.
|
||
|
||
|
||
<span class="pubdate">2016 Sep 6;</span><span class="volume">44</span><span class="issue">(15)</span><span class="pages">:7144-58</span><span>. </span><span class="doi">doi: 10.1093/nar/gkw323. </span><span class="pubstatus">Epub 2016 Apr 25. </span><span class="pmid">PubMed PMID:
|
||
27112571</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC5009722</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
|
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|
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|
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|
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|
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|
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<div class="citation-wrap">
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|
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<div class="align-left">
|
||
<input id="cit398768" type="checkbox" name="cit398768" value="398768" class="citation-check"
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pmid="27366785"
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>
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<label for="cit398768">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Duplat-Bermúdez L, Ruiz-Medrano R, Landsman D, Mariño-Ramírez L, Xoconostle-Cázares B.
|
||
</span><a href="/pubmed/27366785/">
|
||
Dataset of Arabidopsis plants that overexpress FT driven by a meristem-specific KNAT1 promoter.
|
||
</a><span class="source">Data Brief</span>.
|
||
|
||
|
||
<span class="pubdate">2016 Sep;</span><span class="volume">8</span><span class="pages">:520-8</span><span>. </span><span class="doi">doi: 10.1016/j.dib.2016.06.002. </span><span class="pubstatus">eCollection 2016 Sep. </span><span class="pmid">PubMed PMID:
|
||
27366785</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC4919726</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
|
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|
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|
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|
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<div class="citation-wrap">
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|
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|
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<input id="cit398761" type="checkbox" name="cit398761" value="398761" class="citation-check"
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pmid="27154816"
|
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>
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<label for="cit398761">select</label>
|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Duplat-Bermúdez L, Ruiz-Medrano R, Landsman D, Mariño-Ramírez L, Xoconostle-Cázares B.
|
||
</span><a href="/pubmed/27154816/">
|
||
Transcriptomic analysis of Arabidopsis overexpressing flowering locus T driven by a meristem-specific promoter that induces early flowering.
|
||
</a><span class="source">Gene</span>.
|
||
|
||
|
||
<span class="pubdate">2016 Aug 10;</span><span class="volume">587</span><span class="issue">(2)</span><span class="pages">:120-31</span><span>. </span><span class="doi">doi: 10.1016/j.gene.2016.04.060. </span><span class="pubstatus">Epub 2016 May 3. </span><span class="pmid">PubMed PMID:
|
||
27154816</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC4911706</span><span>. </span>
|
||
</div>
|
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</div>
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</div>
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<input id="cit398771" type="checkbox" name="cit398771" value="398771" class="citation-check"
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|
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||
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|
||
</div>
|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Shaytan AK, Armeev GA, Goncearenco A, Zhurkin VB, Landsman D, Panchenko AR.
|
||
</span><a href="/pubmed/27222871/">
|
||
Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles.
|
||
</a><span class="source">Data Brief</span>.
|
||
|
||
|
||
<span class="pubdate">2016 Jun;</span><span class="volume">7</span><span class="pages">:1678-81</span><span>. </span><span class="doi">doi: 10.1016/j.dib.2016.04.073. </span><span class="pubstatus">eCollection 2016 Jun. </span><span class="pmid">PubMed PMID:
|
||
27222871</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC4872717</span><span>. </span>
|
||
</div>
|
||
</div>
|
||
</div>
|
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|
||
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|
||
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|
||
<input id="cit398827" type="checkbox" name="cit398827" value="398827" class="citation-check"
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|
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|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Gamez RM, Rodríguez F, Ramírez S, Gómez Y, Agarwala R, Landsman D, Mariño-Ramírez L.
|
||
</span><a href="/pubmed/27151797/">
|
||
Genome Sequence of the Banana Plant Growth-Promoting Rhizobacterium Pseudomonas fluorescens PS006.
|
||
</a><span class="source">Genome Announc</span>.
|
||
|
||
|
||
<span class="pubdate">2016 May 5;</span><span class="volume">4</span><span class="issue">(3)</span><span>. </span><span class="doi">doi: 10.1128/genomeA.00329-16. </span><span class="pmid">PubMed PMID:
|
||
27151797</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC4859179</span><span>. </span>
|
||
</div>
|
||
</div>
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||
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|
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<input id="cit398716" type="checkbox" name="cit398716" value="398716" class="citation-check"
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<div class="ncbi-docsum">
|
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<span class="authors">
|
||
Draizen EJ, Shaytan AK, Mariño-Ramírez L, Talbert PB, Landsman D, Panchenko AR.
|
||
</span><a href="/pubmed/26989147/">
|
||
HistoneDB 2.0: a histone database with variants--an integrated resource to explore histones and their variants.
|
||
</a><span class="source">Database (Oxford)</span>.
|
||
|
||
|
||
<span class="pubdate">2016;</span><span class="volume">2016</span><span>. </span><span class="doi">doi: 10.1093/database/baw014. </span><span class="pubstatus">Print 2016. </span><span class="pmid">PubMed PMID:
|
||
26989147</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC4795928</span><span>. </span>
|
||
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<div class="ncbi-docsum">
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<span class="authors">
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Bernal JF, Donado-Godoy P, Valencia MF, León M, Gómez Y, Rodríguez F, Agarwala R, Landsman D, Mariño-Ramírez L.
|
||
</span><a href="/pubmed/26988048/">
|
||
Whole-Genome Sequences of Two Campylobacter coli Isolates from the Antimicrobial Resistance Monitoring Program in Colombia.
|
||
</a><span class="source">Genome Announc</span>.
|
||
|
||
|
||
<span class="pubdate">2016 Mar 17;</span><span class="volume">4</span><span class="issue">(2)</span><span>. </span><span class="doi">doi: 10.1128/genomeA.00131-16. </span><span class="pmid">PubMed PMID:
|
||
26988048</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC4796127</span><span>. </span>
|
||
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<div class="ncbi-docsum">
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<span class="authors">
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Bernal JF, Donado-Godoy P, Arévalo A, Duarte C, Realpe ME, Díaz PL, Gómez Y, Rodríguez F, Agarwala R, Landsman D, Mariño-Ramírez L.
|
||
</span><a href="/pubmed/26988047/">
|
||
Whole-Genome Sequence of Multidrug-Resistant Campylobacter coli Strain COL B1-266, Isolated from the Colombian Poultry Chain.
|
||
</a><span class="source">Genome Announc</span>.
|
||
|
||
|
||
<span class="pubdate">2016 Mar 17;</span><span class="volume">4</span><span class="issue">(2)</span><span>. </span><span class="doi">doi: 10.1128/genomeA.00130-16. </span><span class="pmid">PubMed PMID:
|
||
26988047</span><span class="pmcid">; PubMed Central PMCID:
|
||
PMC4796126</span><span>. </span>
|
||
</div>
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pmid="26699921"
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<label for="cit398822">select</label>
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|
||
<div class="ncbi-docsum">
|
||
<span class="authors">
|
||
Shaytan AK, Armeev GA, Goncearenco A, Zhurkin VB, Landsman D, Panchenko AR.
|
||
</span><a href="/pubmed/26699921/">
|
||
Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions.
|
||
</a><span class="source">J Mol Biol</span>.
|
||
|
||
|
||
<span class="pubdate">2016 Jan 16;</span><span class="volume">428</span><span class="issue">(1)</span><span class="pages">:221-237</span><span>. </span><span class="doi">doi: 10.1016/j.jmb.2015.12.004. </span><span class="pubstatus">Epub 2015 Dec 14. </span><span class="pmid">PubMed PMID:
|
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26699921</span><span class="pmcid">; PubMed Central PMCID:
|
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PMC4738025</span><span>. </span>
|
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<span class="authors"></span><a href="/pubmed/26615191/">
|
||
Database resources of the National Center for Biotechnology Information.
|
||
</a><span class="source">Nucleic Acids Res</span>.
|
||
|
||
|
||
<span class="pubdate">2016 Jan 4;</span><span class="volume">44</span><span class="issue">(D1)</span><span class="pages">:D7-19</span><span>. </span><span class="doi">doi: 10.1093/nar/gkv1290. </span><span class="pubstatus">Epub 2015 Nov 28. </span><span class="pmid">PubMed PMID:
|
||
26615191</span><span class="pmcid">; PubMed Central PMCID:
|
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PMC4702911</span><span>. </span>
|
||
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<div class="ncbi-docsum">
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<span class="authors">
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Garzón-Martínez GA, Osorio-Guarín JA, Delgadillo-Durán P, Mayorga F, Enciso-Rodríguez FE, Landsman D, Mariño-Ramírez L, Barrero LS.
|
||
</span><a href="/pubmed/26550601/">
|
||
Genetic diversity and population structure in Physalis peruviana and related taxa based on InDels and SNPs derived from COSII and IRG markers.
|
||
</a><span class="source">Plant Gene</span>.
|
||
|
||
|
||
<span class="pubdate">2015 Dec 1;</span><span class="volume">4</span><span class="pages">:29-37</span><span>. </span><span class="doi">doi: 10.1016/j.plgene.2015.09.003. </span><span class="pmid">PubMed PMID:
|
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26550601</span><span class="pmcid">; PubMed Central PMCID:
|
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PMC4630809</span><span>. </span>
|
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</div>
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