257 lines
18 KiB
Text
257 lines
18 KiB
Text
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<!DOCTYPE html>
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<title>Zebrafish genome issues - Genome Reference Consortium</title>
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<script>
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var taxid = "7955",
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chromosomes = {'GRCz11': {'1': {'name': '1', 'length': 59578282, 'genbank': 'CM002885.2', 'refseq': 'NC_007112.7', 'canonical': 'NC_007112.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '2': {'name': '2', 'length': 59640629, 'genbank': 'CM002886.2', 'refseq': 'NC_007113.7', 'canonical': 'NC_007113.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '3': {'name': '3', 'length': 62628489, 'genbank': 'CM002887.2', 'refseq': 'NC_007114.7', 'canonical': 'NC_007114.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '4': {'name': '4', 'length': 78093715, 'genbank': 'CM002888.2', 'refseq': 'NC_007115.7', 'canonical': 'NC_007115.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '5': {'name': '5', 'length': 72500376, 'genbank': 'CM002889.2', 'refseq': 'NC_007116.7', 'canonical': 'NC_007116.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '6': {'name': '6', 'length': 60270059, 'genbank': 'CM002890.2', 'refseq': 'NC_007117.7', 'canonical': 'NC_007117.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '7': {'name': '7', 'length': 74282399, 'genbank': 'CM002891.2', 'refseq': 'NC_007118.7', 'canonical': 'NC_007118.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '8': {'name': '8', 'length': 54304671, 'genbank': 'CM002892.2', 'refseq': 'NC_007119.7', 'canonical': 'NC_007119.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '9': {'name': '9', 'length': 56459846, 'genbank': 'CM002893.2', 'refseq': 'NC_007120.7', 'canonical': 'NC_007120.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '10': {'name': '10', 'length': 45420867, 'genbank': 'CM002894.2', 'refseq': 'NC_007121.7', 'canonical': 'NC_007121.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '11': {'name': '11', 'length': 45484837, 'genbank': 'CM002895.2', 'refseq': 'NC_007122.7', 'canonical': 'NC_007122.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '12': {'name': '12', 'length': 49182954, 'genbank': 'CM002896.2', 'refseq': 'NC_007123.7', 'canonical': 'NC_007123.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '13': {'name': '13', 'length': 52186027, 'genbank': 'CM002897.2', 'refseq': 'NC_007124.7', 'canonical': 'NC_007124.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '14': {'name': '14', 'length': 52660232, 'genbank': 'CM002898.2', 'refseq': 'NC_007125.7', 'canonical': 'NC_007125.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '15': {'name': '15', 'length': 48040578, 'genbank': 'CM002899.2', 'refseq': 'NC_007126.7', 'canonical': 'NC_007126.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '16': {'name': '16', 'length': 55266484, 'genbank': 'CM002900.2', 'refseq': 'NC_007127.7', 'canonical': 'NC_007127.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '17': {'name': '17', 'length': 53461100, 'genbank': 'CM002901.2', 'refseq': 'NC_007128.7', 'canonical': 'NC_007128.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '18': {'name': '18', 'length': 51023478, 'genbank': 'CM002902.2', 'refseq': 'NC_007129.7', 'canonical': 'NC_007129.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '19': {'name': '19', 'length': 48449771, 'genbank': 'CM002903.2', 'refseq': 'NC_007130.7', 'canonical': 'NC_007130.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '20': {'name': '20', 'length': 55201332, 'genbank': 'CM002904.2', 'refseq': 'NC_007131.7', 'canonical': 'NC_007131.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '21': {'name': '21', 'length': 45934066, 'genbank': 'CM002905.2', 'refseq': 'NC_007132.7', 'canonical': 'NC_007132.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '22': {'name': '22', 'length': 39133080, 'genbank': 'CM002906.2', 'refseq': 'NC_007133.7', 'canonical': 'NC_007133.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '23': {'name': '23', 'length': 46223584, 'genbank': 'CM002907.2', 'refseq': 'NC_007134.7', 'canonical': 'NC_007134.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '24': {'name': '24', 'length': 42172926, 'genbank': 'CM002908.2', 'refseq': 'NC_007135.7', 'canonical': 'NC_007135.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '25': {'name': '25', 'length': 37502051, 'genbank': 'CM002909.2', 'refseq': 'NC_007136.7', 'canonical': 'NC_007136.7', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}}, 'GRCz10': {'1': {'name': '1', 'length': 58871917, 'genbank': 'CM002885.1', 'refseq': 'NC_007112.6', 'canonical': 'NC_007112.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '2': {'name': '2', 'length': 59543403, 'genbank': 'CM002886.1', 'refseq': 'NC_007113.6', 'canonical': 'NC_007113.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '3': {'name': '3', 'length': 62385949, 'genbank': 'CM002887.1', 'refseq': 'NC_007114.6', 'canonical': 'NC_007114.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '4': {'name': '4', 'length': 76625712, 'genbank': 'CM002888.1', 'refseq': 'NC_007115.6', 'canonical': 'NC_007115.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '5': {'name': '5', 'length': 71715914, 'genbank': 'CM002889.1', 'refseq': 'NC_007116.6', 'canonical': 'NC_007116.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '6': {'name': '6', 'length': 60272633, 'genbank': 'CM002890.1', 'refseq': 'NC_007117.6', 'canonical': 'NC_007117.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '7': {'name': '7', 'length': 74082188, 'genbank': 'CM002891.1', 'refseq': 'NC_007118.6', 'canonical': 'NC_007118.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '8': {'name': '8', 'length': 54191831, 'genbank': 'CM002892.1', 'refseq': 'NC_007119.6', 'canonical': 'NC_007119.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '9': {'name': '9', 'length': 56892771, 'genbank': 'CM002893.1', 'refseq': 'NC_007120.6', 'canonical': 'NC_007120.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '10': {'name': '10', 'length': 45574255, 'genbank': 'CM002894.1', 'refseq': 'NC_007121.6', 'canonical': 'NC_007121.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '11': {'name': '11', 'length': 45107271, 'genbank': 'CM002895.1', 'refseq': 'NC_007122.6', 'canonical': 'NC_007122.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '12': {'name': '12', 'length': 49229541, 'genbank': 'CM002896.1', 'refseq': 'NC_007123.6', 'canonical': 'NC_007123.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '13': {'name': '13', 'length': 51780250, 'genbank': 'CM002897.1', 'refseq': 'NC_007124.6', 'canonical': 'NC_007124.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '14': {'name': '14', 'length': 51944548, 'genbank': 'CM002898.1', 'refseq': 'NC_007125.6', 'canonical': 'NC_007125.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '15': {'name': '15', 'length': 47771147, 'genbank': 'CM002899.1', 'refseq': 'NC_007126.6', 'canonical': 'NC_007126.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '16': {'name': '16', 'length': 55381981, 'genbank': 'CM002900.1', 'refseq': 'NC_007127.6', 'canonical': 'NC_007127.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '17': {'name': '17', 'length': 53345113, 'genbank': 'CM002901.1', 'refseq': 'NC_007128.6', 'canonical': 'NC_007128.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '18': {'name': '18', 'length': 51008593, 'genbank': 'CM002902.1', 'refseq': 'NC_007129.6', 'canonical': 'NC_007129.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '19': {'name': '19', 'length': 48790377, 'genbank': 'CM002903.1', 'refseq': 'NC_007130.6', 'canonical': 'NC_007130.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '20': {'name': '20', 'length': 55370968, 'genbank': 'CM002904.1', 'refseq': 'NC_007131.6', 'canonical': 'NC_007131.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '21': {'name': '21', 'length': 45895719, 'genbank': 'CM002905.1', 'refseq': 'NC_007132.6', 'canonical': 'NC_007132.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '22': {'name': '22', 'length': 39226288, 'genbank': 'CM002906.1', 'refseq': 'NC_007133.6', 'canonical': 'NC_007133.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '23': {'name': '23', 'length': 46272358, 'genbank': 'CM002907.1', 'refseq': 'NC_007134.6', 'canonical': 'NC_007134.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '24': {'name': '24', 'length': 42251103, 'genbank': 'CM002908.1', 'refseq': 'NC_007135.6', 'canonical': 'NC_007135.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}, '25': {'name': '25', 'length': 36898761, 'genbank': 'CM002909.1', 'refseq': 'NC_007136.6', 'canonical': 'NC_007136.6', 'canonical_db_name': 'RefSeq', 'type': 'chromosome'}}},
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assemblies = [{'name': 'GRCz11', 'type': 'Major', 'gb_acc': 'GCA_000002035.4', 'rs_acc': 'GCF_000002035.6', 'accessions': {'genBank': 'GCA_000002035.4', 'refSeq': 'GCF_000002035.6'}, 'release_date': '2017-05-09', 'pretty_release_date': 'May 9, 2017', 'release_notes': 'GRCz11 is the second update to the zebrafish genome assembly released by the GRC. In this release for the first time alternate loci scaffolds (ALT_REF_LOCI) are included. More than 400 genome issues were resolved.', 'group': '3', 'ftp_path': 'GCA/000/002/035/GCA_000002035.4_GRCz11'}, {'name': 'GRCz10', 'type': 'Major', 'gb_acc': 'GCA_000002035.3', 'rs_acc': 'GCF_000002035.5', 'accessions': {'genBank': 'GCA_000002035.3', 'refSeq': 'GCF_000002035.5'}, 'release_date': '2014-09-12', 'pretty_release_date': 'September 12, 2014', 'release_notes': 'GRCz10 is the first update to the zebrafish genome assembly released by the GRC. All chromosomes and scaffolds have been assigned new accessions. More than 4000 genome issues were resolved.', 'group': '3', 'ftp_path': 'GCA/000/002/035/GCA_000002035.3_GRCz10'}], // Assemblies that have issue mappings for this organism
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asmAcc = "",
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asmName = "GRCz11",
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organism = {'taxid': '7955', 'common_name': 'Zebrafish', 'common_name_lowercase': 'zebrafish', 'scientific_name': 'Danio rerio'},
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uncuratedChromosomes = [];
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<h1>Zebrafish Genome Issues</h1>
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<option>GRCz11</option>
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<option>GRCz10</option>
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<li class="gene-example">Gene: <a href="?q=meis2a">meis2a</a>, <a href="?q=zgc:112271">zgc:112271</a></li>
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<li class="location-example">Location: <a href="?q=chr1:15000000-9000000">chr1:1,500,000-9,000,000</a></li>
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<li class="clone-accession-example">Clone accession: <a href="?q=CU467629.3">CU467629.3</a></li>
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</div> --!>
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<th id="issue-id-column-header">Issue ID</th>
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<th id="type-column-header">Type</th>
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<!-- <th id="region-column-header">Region</th> -->
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<!-- <th id="resolution-column-header">Resolution</th> -->
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<!-- <th id="affects-column-header">Affects version</th> -->
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<th id="fix-column-header" >Fix version</th>
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<th id="summary-column-header">Summary</th>
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if (typeof issues == "undefined") {
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<li><a target="_blank" href="http://www.wellcome.ac.uk">Wellcome Sanger Institute</a></li>
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<li><a target="_blank" href="https://www.hhs.gov">HHS</a></li>
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<li><a target="_blank" href="https://www.nih.gov">NIH</a></li>
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<li><a target="_blank" href="https://www.nih.gov/web-policies-notices">Accessibility</a></li>
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<li class="last"><a target="_blank" href="https://www.hhs.gov/vulnerability-disclosure-policy/index.html">HHS Vulnerability Disclosure</a></li>
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</ul>
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